RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13327
         (154 letters)



>d1d6za2 d.17.2.1 (A:91-185) Copper amine oxidase, domains 1 and 2
           {Escherichia coli [TaxId: 562]}
          Length = 95

 Score = 26.0 bits (57), Expect = 1.1
 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 18/57 (31%)

Query: 72  TETINTVAEIIRSNHENQEH--FANVY----------------APSDPPRQAIVVLL 110
            + I    EI++++ + + +  F  +                  P D PR+A V++L
Sbjct: 11  ADEIKQAVEIVKASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKADVIML 67


>d1t56a2 a.121.1.1 (A:95-214) Ethr repressor {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 120

 Score = 24.0 bits (52), Expect = 7.0
 Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 6/47 (12%)

Query: 70  ILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQ 116
            + + I   A +I +  +         AP   P   +   L  M  +
Sbjct: 47  FMQKWIAYTAAVIDAERDRG------AAPRTLPAHELATALNLMNER 87


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0620    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 509,443
Number of extensions: 19396
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 3
Length of query: 154
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 76
Effective length of database: 1,336,656
Effective search space: 101585856
Effective search space used: 101585856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.9 bits)