BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13328
         (68 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P41541|USO1_BOVIN General vesicular transport factor p115 OS=Bos taurus GN=USO1 PE=1
           SV=1
          Length = 961

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/42 (71%), Positives = 33/42 (78%)

Query: 24  VGEQFTEIFIKNHENVSLVLGYLEEFDFRVRWSAVKLLTGLL 65
           +G QFTEIFIK  ENV+L+L  LEEFDF VRW  VKLLT LL
Sbjct: 109 LGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLL 150


>sp|O60763|USO1_HUMAN General vesicular transport factor p115 OS=Homo sapiens GN=USO1
           PE=1 SV=2
          Length = 962

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/42 (71%), Positives = 33/42 (78%)

Query: 24  VGEQFTEIFIKNHENVSLVLGYLEEFDFRVRWSAVKLLTGLL 65
           +G QFTEIFIK  ENV+L+L  LEEFDF VRW  VKLLT LL
Sbjct: 109 LGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLL 150


>sp|Q9Z1Z0|USO1_MOUSE General vesicular transport factor p115 OS=Mus musculus GN=Uso1
           PE=1 SV=2
          Length = 959

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 33/42 (78%)

Query: 24  VGEQFTEIFIKNHENVSLVLGYLEEFDFRVRWSAVKLLTGLL 65
           +G QFTEIFIK  ENV+L+L  LEEFDF VRW  V+LLT LL
Sbjct: 109 LGSQFTEIFIKQPENVTLLLSLLEEFDFHVRWPGVRLLTSLL 150


>sp|P41542|USO1_RAT General vesicular transport factor p115 OS=Rattus norvegicus
           GN=Uso1 PE=1 SV=1
          Length = 959

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 33/42 (78%)

Query: 24  VGEQFTEIFIKNHENVSLVLGYLEEFDFRVRWSAVKLLTGLL 65
           +G QFTEIFIK  ENV+L+L  LEEFDF VRW  V+LLT LL
Sbjct: 109 LGSQFTEIFIKQPENVTLLLSLLEEFDFHVRWPGVRLLTSLL 150


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.137    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,957,994
Number of Sequences: 539616
Number of extensions: 792125
Number of successful extensions: 1621
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1615
Number of HSP's gapped (non-prelim): 6
length of query: 68
length of database: 191,569,459
effective HSP length: 40
effective length of query: 28
effective length of database: 169,984,819
effective search space: 4759574932
effective search space used: 4759574932
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)