Query psy13328
Match_columns 68
No_of_seqs 74 out of 76
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 16:41:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13328.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13328hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3grl_A General vesicular trans 99.6 6.5E-16 2.2E-20 124.1 4.6 55 14-68 99-153 (651)
2 3ltm_A Alpha-REP4; protein eng 83.0 1.3 4.3E-05 27.6 3.4 27 37-63 50-76 (211)
3 1upk_A MO25 protein; transfera 82.8 2.7 9.4E-05 31.7 5.7 49 19-68 61-109 (341)
4 3ltj_A Alpharep-4; protein eng 75.0 2.5 8.7E-05 25.9 2.9 28 37-64 45-72 (201)
5 3ltm_A Alpha-REP4; protein eng 74.3 3.6 0.00012 25.4 3.5 25 38-62 113-137 (211)
6 1te4_A Conserved protein MTH18 74.1 2.7 9.2E-05 24.8 2.8 27 37-63 73-99 (131)
7 3ltj_A Alpharep-4; protein eng 73.7 3.8 0.00013 25.1 3.5 29 35-63 74-102 (201)
8 2f31_A Diaphanous protein homo 70.9 5.3 0.00018 27.0 4.0 37 30-66 89-125 (233)
9 4hxt_A De novo protein OR329; 68.2 9.2 0.00031 23.5 4.4 33 35-67 210-242 (252)
10 4db6_A Armadillo repeat protei 65.8 9.8 0.00034 23.1 4.1 33 35-67 136-168 (210)
11 4db6_A Armadillo repeat protei 65.0 8.9 0.0003 23.3 3.8 33 35-67 178-210 (210)
12 1oyz_A Hypothetical protein YI 64.5 7.2 0.00025 25.2 3.5 28 36-63 22-49 (280)
13 4db8_A Armadillo-repeat protei 62.5 12 0.00042 23.3 4.2 34 33-66 134-167 (252)
14 1te4_A Conserved protein MTH18 61.8 2.9 0.0001 24.7 1.1 30 34-63 101-130 (131)
15 4db8_A Armadillo-repeat protei 59.8 6.2 0.00021 24.7 2.4 33 35-67 220-252 (252)
16 4hxt_A De novo protein OR329; 58.9 14 0.00049 22.6 4.0 31 36-66 127-157 (252)
17 2jdq_A Importin alpha-1 subuni 57.4 15 0.00053 24.6 4.2 30 37-66 64-94 (450)
18 1oyz_A Hypothetical protein YI 54.3 11 0.00038 24.2 3.0 23 39-61 161-183 (280)
19 1xm9_A Plakophilin 1; armadill 52.5 21 0.00071 25.6 4.5 37 31-67 325-361 (457)
20 3eg5_B Protein diaphanous homo 50.3 20 0.00067 26.3 4.1 38 29-66 154-191 (383)
21 2bnx_A Diaphanous protein homo 49.8 21 0.00071 26.1 4.2 37 30-66 93-129 (386)
22 2jdq_A Importin alpha-1 subuni 49.0 19 0.00066 24.1 3.6 32 35-66 359-390 (450)
23 1xqr_A HSPBP1 protein; armadil 48.8 20 0.00069 25.0 3.8 34 34-67 206-239 (296)
24 2x19_B Importin-13; nuclear tr 48.5 30 0.001 26.4 4.9 43 25-67 45-88 (963)
25 1w63_A Adapter-related protein 48.0 18 0.00061 27.2 3.7 29 38-66 351-379 (618)
26 1xqr_A HSPBP1 protein; armadil 42.3 33 0.0011 23.9 4.1 35 31-66 162-196 (296)
27 1ibr_B P95, importin beta-1 su 42.1 45 0.0015 22.3 4.6 32 35-66 33-66 (462)
28 1ibr_B P95, importin beta-1 su 42.0 29 0.001 23.2 3.6 31 36-66 407-437 (462)
29 3ul1_B Importin subunit alpha- 40.7 36 0.0012 24.6 4.2 34 33-66 397-430 (510)
30 4b8j_A Importin subunit alpha- 40.4 29 0.001 24.4 3.6 32 36-67 370-401 (528)
31 4b8j_A Importin subunit alpha- 40.1 39 0.0013 23.8 4.2 32 35-66 412-443 (528)
32 1pi1_A MOB1A; mitotic EXIT net 39.9 23 0.00078 24.2 2.9 31 18-48 16-46 (185)
33 3tpo_A Importin subunit alpha- 39.6 39 0.0013 24.4 4.2 34 33-66 416-449 (529)
34 3m1i_C Exportin-1; heat repeat 38.9 41 0.0014 26.6 4.5 43 25-67 36-79 (1049)
35 2krx_A ASL3597 protein; struct 37.6 2.3 7.9E-05 27.2 -2.3 47 14-60 16-84 (94)
36 3nmw_A APC variant protein; AR 37.5 42 0.0014 23.9 4.1 36 33-68 301-336 (354)
37 1wa5_B Importin alpha subunit; 37.3 30 0.001 24.5 3.3 32 35-66 381-412 (530)
38 3ul1_B Importin subunit alpha- 37.2 36 0.0012 24.6 3.7 32 35-66 356-387 (510)
39 3im4_C Dual specificity A kina 36.2 14 0.0005 20.9 1.2 27 15-41 8-34 (45)
40 2hjn_A MPS1 binder 1, maintena 36.2 27 0.00092 25.0 2.9 31 18-48 69-99 (236)
41 3ibv_A Exportin-T; karyopherin 35.5 59 0.002 26.4 5.1 45 22-66 25-72 (980)
42 2vgl_B AP-2 complex subunit be 35.4 63 0.0022 23.8 4.9 43 24-66 141-189 (591)
43 1upk_A MO25 protein; transfera 34.9 23 0.00078 26.7 2.5 28 41-68 213-240 (341)
44 1b3u_A Protein (protein phosph 34.8 30 0.001 24.0 2.9 27 39-65 244-270 (588)
45 1wa5_B Importin alpha subunit; 34.5 48 0.0017 23.5 4.0 32 35-66 426-457 (530)
46 3dpl_C Cullin-5; ubiquitin, NE 33.9 63 0.0021 23.5 4.6 48 21-68 6-68 (382)
47 2qk2_A LP04448P; mini spindles 33.7 46 0.0016 21.1 3.5 26 40-65 136-161 (242)
48 3iby_A Ferrous iron transport 32.6 25 0.00087 23.6 2.2 12 51-62 198-209 (256)
49 1jdh_A Beta-catenin; beta-cate 32.3 44 0.0015 23.0 3.4 32 35-66 99-130 (529)
50 2x1g_F Cadmus; transport prote 32.3 38 0.0013 26.1 3.3 43 25-67 27-70 (971)
51 3gjx_A Exportin-1; transport, 31.5 26 0.00087 29.4 2.4 43 25-67 48-91 (1073)
52 1jdh_A Beta-catenin; beta-cate 31.4 49 0.0017 22.8 3.5 31 36-66 16-46 (529)
53 2vgl_A Adaptor protein complex 30.8 35 0.0012 25.9 2.9 30 37-66 368-398 (621)
54 3tpo_A Importin subunit alpha- 30.2 55 0.0019 23.6 3.7 33 34-66 374-406 (529)
55 1vf6_C Maguk P55 subfamily mem 30.0 16 0.00054 22.5 0.7 21 33-53 33-53 (72)
56 1b3u_A Protein (protein phosph 29.9 54 0.0018 22.7 3.5 29 38-66 165-193 (588)
57 3nmz_A APC variant protein; pr 29.7 58 0.002 24.3 3.9 36 33-68 417-452 (458)
58 3now_A UNC-45 protein, SD10334 28.3 72 0.0025 26.0 4.5 39 29-67 700-738 (810)
59 3zyq_A Hepatocyte growth facto 27.8 1.4E+02 0.0048 20.1 5.9 52 16-67 20-75 (226)
60 3arc_F Cytochrome B559 subunit 27.8 23 0.0008 19.9 1.1 14 48-61 12-25 (44)
61 4hat_C Exportin-1; heat repeat 27.4 59 0.002 26.7 3.8 44 24-67 35-79 (1023)
62 3dad_A FH1/FH2 domain-containi 26.0 89 0.0031 23.4 4.3 39 27-66 151-189 (339)
63 4fdd_A Transportin-1; heat rep 25.8 88 0.003 23.7 4.3 32 35-66 627-658 (852)
64 2z6h_A Catenin beta-1, beta-ca 24.9 80 0.0027 23.2 3.8 31 36-66 97-127 (644)
65 3b2a_A TON_1937, putative unch 24.7 75 0.0026 23.5 3.6 30 39-68 152-181 (265)
66 2z6g_A B-catenin; FULL-length, 24.3 67 0.0023 24.8 3.5 31 36-66 149-179 (780)
67 2z6g_A B-catenin; FULL-length, 23.9 1E+02 0.0035 23.9 4.4 35 33-67 630-664 (780)
68 2xsd_C POU domain, class 3, tr 23.5 28 0.00096 22.7 1.1 40 19-59 10-60 (164)
69 3l9t_A Putative uncharacterize 23.3 1E+02 0.0035 22.0 4.0 36 25-60 125-162 (240)
70 1qgr_A Protein (importin beta 22.8 78 0.0027 23.3 3.4 29 38-66 409-437 (876)
71 4fdd_A Transportin-1; heat rep 22.7 1.1E+02 0.0039 23.0 4.4 43 25-67 33-78 (852)
72 3now_A UNC-45 protein, SD10334 22.5 1E+02 0.0035 25.1 4.3 36 31-66 659-694 (810)
73 3a6p_A Exportin-5; exportin-5, 22.3 1.3E+02 0.0043 24.9 4.9 43 25-67 33-77 (1204)
74 2z6h_A Catenin beta-1, beta-ca 21.9 85 0.0029 23.1 3.5 32 35-66 12-43 (644)
75 2db0_A 253AA long hypothetical 21.5 96 0.0033 22.8 3.7 44 25-68 17-63 (253)
76 1b79_A DNAB helicase; hexamer, 20.9 1.2E+02 0.0039 18.5 3.5 39 19-57 18-56 (119)
77 3k53_A Ferrous iron transport 20.8 59 0.002 21.4 2.3 11 51-61 201-211 (271)
78 1x5b_A Signal transducing adap 20.7 1.8E+02 0.0061 18.8 6.1 50 18-67 29-82 (163)
79 2bpt_A Importin beta-1 subunit 20.6 1E+02 0.0034 22.6 3.6 31 36-66 38-70 (861)
No 1
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.59 E-value=6.5e-16 Score=124.08 Aligned_cols=55 Identities=56% Similarity=0.889 Sum_probs=45.4
Q ss_pred CCCCCCcchhHHHHHHHHHhhccchHHHHHhhhhccchhHHHhHHHHHHHHhhcC
Q psy13328 14 PEGAIHREISVGEQFTEIFIKNHENVSLVLGYLEEFDFRVRWSAVKLLTGLLLNR 68 (68)
Q Consensus 14 ~e~s~~~~deig~~ftE~f~k~~eNItLLL~lLee~DF~VR~~avqLLTaLL~nR 68 (68)
.++++++++|+|.||||+|+|+++||++|+++|++.|||||+||||||++|+.+|
T Consensus 99 ~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r 153 (651)
T 3grl_A 99 EENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQL 153 (651)
T ss_dssp ---------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHS
T ss_pred cccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcC
Confidence 4567889999999999999999999999999999999999999999999999887
No 2
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=83.04 E-value=1.3 Score=27.58 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=14.1
Q ss_pred chHHHHHhhhhccchhHHHhHHHHHHH
Q psy13328 37 ENVSLVLGYLEEFDFRVRWSAVKLLTG 63 (68)
Q Consensus 37 eNItLLL~lLee~DF~VR~~avqLLTa 63 (68)
+-+..|+.+|...|-.||..|++.|..
T Consensus 50 ~~~~~L~~~l~~~~~~vr~~a~~aL~~ 76 (211)
T 3ltm_A 50 RAVEPLIKALKDEDAWVRRAAADALGQ 76 (211)
T ss_dssp GGHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 445555555555555555555555443
No 3
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=82.76 E-value=2.7 Score=31.72 Aligned_cols=49 Identities=12% Similarity=0.215 Sum_probs=41.3
Q ss_pred CcchhHHHHHHHHHhhccchHHHHHhhhhccchhHHHhHHHHHHHHhhcC
Q psy13328 19 HREISVGEQFTEIFIKNHENVSLVLGYLEEFDFRVRWSAVKLLTGLLLNR 68 (68)
Q Consensus 19 ~~~deig~~ftE~f~k~~eNItLLL~lLee~DF~VR~~avqLLTaLL~nR 68 (68)
+...|...|+|.++.+. +-+.+|+..|...||=.|-.+.++.++|++.+
T Consensus 61 ep~~e~~~qL~~ei~~~-dll~~Li~~l~~L~fE~RKd~~~if~~llr~~ 109 (341)
T 1upk_A 61 EPQTEAVAQLAQELYNS-GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQ 109 (341)
T ss_dssp --CHHHHHHHHHHHHHH-SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHh-CHHHHHHHhcccCCchhhccHHHHHHHHHhcc
Confidence 34456788999998766 88889999999999999999999999999753
No 4
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=75.03 E-value=2.5 Score=25.95 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=19.7
Q ss_pred chHHHHHhhhhccchhHHHhHHHHHHHH
Q psy13328 37 ENVSLVLGYLEEFDFRVRWSAVKLLTGL 64 (68)
Q Consensus 37 eNItLLL~lLee~DF~VR~~avqLLTaL 64 (68)
+-+..|+.+|...|-.||..|++.|..+
T Consensus 45 ~~~~~L~~~l~~~~~~vr~~a~~~L~~~ 72 (201)
T 3ltj_A 45 RAVEPLIKALKDEDAWVRRAAADALGQI 72 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 3567777777777777777777776554
No 5
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=74.33 E-value=3.6 Score=25.45 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=11.3
Q ss_pred hHHHHHhhhhccchhHHHhHHHHHH
Q psy13328 38 NVSLVLGYLEEFDFRVRWSAVKLLT 62 (68)
Q Consensus 38 NItLLL~lLee~DF~VR~~avqLLT 62 (68)
.+..|+.+|+..|..||..|++.|.
T Consensus 113 ~~~~L~~~l~d~~~~vr~~a~~aL~ 137 (211)
T 3ltm_A 113 AVEPLIKALKDEDWFVRIAAAFALG 137 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 6
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=74.15 E-value=2.7 Score=24.84 Aligned_cols=27 Identities=26% Similarity=0.175 Sum_probs=16.1
Q ss_pred chHHHHHhhhhccchhHHHhHHHHHHH
Q psy13328 37 ENVSLVLGYLEEFDFRVRWSAVKLLTG 63 (68)
Q Consensus 37 eNItLLL~lLee~DF~VR~~avqLLTa 63 (68)
+-+..|+.+|+..|..||..|+.-|..
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~ 99 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQ 99 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 345566666666666666666655543
No 7
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=73.70 E-value=3.8 Score=25.12 Aligned_cols=29 Identities=28% Similarity=0.189 Sum_probs=17.5
Q ss_pred ccchHHHHHhhhhccchhHHHhHHHHHHH
Q psy13328 35 NHENVSLVLGYLEEFDFRVRWSAVKLLTG 63 (68)
Q Consensus 35 ~~eNItLLL~lLee~DF~VR~~avqLLTa 63 (68)
.++.+..|+.+|...|-.||..|++.|..
T Consensus 74 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 74 DERAVEPLIKALKDEDGWVRQSAAVALGQ 102 (201)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44556666666666666666666665544
No 8
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=70.94 E-value=5.3 Score=26.96 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=33.1
Q ss_pred HHHhhccchHHHHHhhhhccchhHHHhHHHHHHHHhh
Q psy13328 30 EIFIKNHENVSLVLGYLEEFDFRVRWSAVKLLTGLLL 66 (68)
Q Consensus 30 E~f~k~~eNItLLL~lLee~DF~VR~~avqLLTaLL~ 66 (68)
+.++..++-|..|...|+.....+|--+++||+++..
T Consensus 89 ~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~ 125 (233)
T 2f31_A 89 KTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCI 125 (233)
T ss_dssp HHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 4567888999999999999999999999999999864
No 9
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=68.20 E-value=9.2 Score=23.45 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=29.1
Q ss_pred ccchHHHHHhhhhccchhHHHhHHHHHHHHhhc
Q psy13328 35 NHENVSLVLGYLEEFDFRVRWSAVKLLTGLLLN 67 (68)
Q Consensus 35 ~~eNItLLL~lLee~DF~VR~~avqLLTaLL~n 67 (68)
+.+-|..|+.++...|..||..|+..|..|..+
T Consensus 210 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 210 DAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 456789999999999999999999999998754
No 10
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=65.82 E-value=9.8 Score=23.14 Aligned_cols=33 Identities=9% Similarity=0.083 Sum_probs=29.1
Q ss_pred ccchHHHHHhhhhccchhHHHhHHHHHHHHhhc
Q psy13328 35 NHENVSLVLGYLEEFDFRVRWSAVKLLTGLLLN 67 (68)
Q Consensus 35 ~~eNItLLL~lLee~DF~VR~~avqLLTaLL~n 67 (68)
+.+-|..|+.+|...+..||..|+..|..|..+
T Consensus 136 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 136 DAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 456789999999999999999999999998754
No 11
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=65.00 E-value=8.9 Score=23.35 Aligned_cols=33 Identities=9% Similarity=-0.002 Sum_probs=28.2
Q ss_pred ccchHHHHHhhhhccchhHHHhHHHHHHHHhhc
Q psy13328 35 NHENVSLVLGYLEEFDFRVRWSAVKLLTGLLLN 67 (68)
Q Consensus 35 ~~eNItLLL~lLee~DF~VR~~avqLLTaLL~n 67 (68)
+.+-|..|+.+|...+..||..|...|..|.++
T Consensus 178 ~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 178 EAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 346788999999999999999999999988653
No 12
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=64.50 E-value=7.2 Score=25.15 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=15.9
Q ss_pred cchHHHHHhhhhccchhHHHhHHHHHHH
Q psy13328 36 HENVSLVLGYLEEFDFRVRWSAVKLLTG 63 (68)
Q Consensus 36 ~eNItLLL~lLee~DF~VR~~avqLLTa 63 (68)
+..|..|+.+|...|..||+.|++.|..
T Consensus 22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~ 49 (280)
T 1oyz_A 22 KLNDDELFRLLDDHNSLKRISSARVLQL 49 (280)
T ss_dssp TSCHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHc
Confidence 3455566666666666666665555543
No 13
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=62.46 E-value=12 Score=23.27 Aligned_cols=34 Identities=9% Similarity=0.087 Sum_probs=29.6
Q ss_pred hhccchHHHHHhhhhccchhHHHhHHHHHHHHhh
Q psy13328 33 IKNHENVSLVLGYLEEFDFRVRWSAVKLLTGLLL 66 (68)
Q Consensus 33 ~k~~eNItLLL~lLee~DF~VR~~avqLLTaLL~ 66 (68)
+.+.+-|..|+.+|...+..||..|+..|..|..
T Consensus 134 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 167 (252)
T 4db8_A 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 3455678999999999999999999999999875
No 14
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=61.83 E-value=2.9 Score=24.67 Aligned_cols=30 Identities=17% Similarity=-0.087 Sum_probs=25.0
Q ss_pred hccchHHHHHhhhhccchhHHHhHHHHHHH
Q psy13328 34 KNHENVSLVLGYLEEFDFRVRWSAVKLLTG 63 (68)
Q Consensus 34 k~~eNItLLL~lLee~DF~VR~~avqLLTa 63 (68)
..++-+..|+.+|.+.|..||..|++-|..
T Consensus 101 ~~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 101 GGERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp CSHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 456678899999999999999999887643
No 15
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=59.79 E-value=6.2 Score=24.68 Aligned_cols=33 Identities=9% Similarity=-0.002 Sum_probs=27.7
Q ss_pred ccchHHHHHhhhhccchhHHHhHHHHHHHHhhc
Q psy13328 35 NHENVSLVLGYLEEFDFRVRWSAVKLLTGLLLN 67 (68)
Q Consensus 35 ~~eNItLLL~lLee~DF~VR~~avqLLTaLL~n 67 (68)
+.+-|..|+.+|...+..||..|...|..|.++
T Consensus 220 ~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~~ 252 (252)
T 4db8_A 220 EAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252 (252)
T ss_dssp HTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC--
T ss_pred HCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Confidence 456788899999999999999999999988654
No 16
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=58.94 E-value=14 Score=22.57 Aligned_cols=31 Identities=19% Similarity=0.228 Sum_probs=28.0
Q ss_pred cchHHHHHhhhhccchhHHHhHHHHHHHHhh
Q psy13328 36 HENVSLVLGYLEEFDFRVRWSAVKLLTGLLL 66 (68)
Q Consensus 36 ~eNItLLL~lLee~DF~VR~~avqLLTaLL~ 66 (68)
.+-|..|+.+|...+-.+|..|+..|..|..
T Consensus 127 ~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 127 AGGVEVLVKLLTSTDSEVQKEAARALANIAS 157 (252)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999999875
No 17
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=57.43 E-value=15 Score=24.63 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=26.8
Q ss_pred chHHHHHhhhhcc-chhHHHhHHHHHHHHhh
Q psy13328 37 ENVSLVLGYLEEF-DFRVRWSAVKLLTGLLL 66 (68)
Q Consensus 37 eNItLLL~lLee~-DF~VR~~avqLLTaLL~ 66 (68)
+-|..|+.+|... +..||..|.+.|+.|..
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~ 94 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIAS 94 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhc
Confidence 6688999999888 89999999999999875
No 18
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=54.35 E-value=11 Score=24.21 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=9.7
Q ss_pred HHHHHhhhhccchhHHHhHHHHH
Q psy13328 39 VSLVLGYLEEFDFRVRWSAVKLL 61 (68)
Q Consensus 39 ItLLL~lLee~DF~VR~~avqLL 61 (68)
+..|+.+|...|..||..|++-|
T Consensus 161 ~~~L~~~l~d~~~~vr~~a~~aL 183 (280)
T 1oyz_A 161 IPLLINLLKDPNGDVRNWAAFAI 183 (280)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH
Confidence 34444444444444444444433
No 19
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=52.50 E-value=21 Score=25.59 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=31.4
Q ss_pred HHhhccchHHHHHhhhhccchhHHHhHHHHHHHHhhc
Q psy13328 31 IFIKNHENVSLVLGYLEEFDFRVRWSAVKLLTGLLLN 67 (68)
Q Consensus 31 ~f~k~~eNItLLL~lLee~DF~VR~~avqLLTaLL~n 67 (68)
..+.+..=|+.|..+|...|+.||..|..+|+.|..+
T Consensus 325 ~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 325 LIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp HHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence 3455667789999999999999999999999998653
No 20
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=50.33 E-value=20 Score=26.30 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=33.6
Q ss_pred HHHHhhccchHHHHHhhhhccchhHHHhHHHHHHHHhh
Q psy13328 29 TEIFIKNHENVSLVLGYLEEFDFRVRWSAVKLLTGLLL 66 (68)
Q Consensus 29 tE~f~k~~eNItLLL~lLee~DF~VR~~avqLLTaLL~ 66 (68)
.+.++..++.|..|..+|....-.+|-.|++||++++.
T Consensus 154 ~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~ 191 (383)
T 3eg5_B 154 IKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCI 191 (383)
T ss_dssp HHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHh
Confidence 35577899999999999999999999999999999864
No 21
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=49.82 E-value=21 Score=26.13 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=32.9
Q ss_pred HHHhhccchHHHHHhhhhccchhHHHhHHHHHHHHhh
Q psy13328 30 EIFIKNHENVSLVLGYLEEFDFRVRWSAVKLLTGLLL 66 (68)
Q Consensus 30 E~f~k~~eNItLLL~lLee~DF~VR~~avqLLTaLL~ 66 (68)
+.++..+.-|..+...|......+|--+++||++++.
T Consensus 93 ~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~ 129 (386)
T 2bnx_A 93 KTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCI 129 (386)
T ss_dssp HHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHc
Confidence 4567888999999999999999999999999999864
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=49.02 E-value=19 Score=24.14 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=27.8
Q ss_pred ccchHHHHHhhhhccchhHHHhHHHHHHHHhh
Q psy13328 35 NHENVSLVLGYLEEFDFRVRWSAVKLLTGLLL 66 (68)
Q Consensus 35 ~~eNItLLL~lLee~DF~VR~~avqLLTaLL~ 66 (68)
...-|..|+.+|...|..||..|+..|..|+.
T Consensus 359 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 359 ELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp HHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 34678889999999999999999999988874
No 23
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=48.84 E-value=20 Score=24.99 Aligned_cols=34 Identities=9% Similarity=0.014 Sum_probs=29.8
Q ss_pred hccchHHHHHhhhhccchhHHHhHHHHHHHHhhc
Q psy13328 34 KNHENVSLVLGYLEEFDFRVRWSAVKLLTGLLLN 67 (68)
Q Consensus 34 k~~eNItLLL~lLee~DF~VR~~avqLLTaLL~n 67 (68)
.+.+-|..|..+|...|..||-+|+..|.+|++.
T Consensus 206 v~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 206 CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 4567788899999999999999999999998764
No 24
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=48.53 E-value=30 Score=26.45 Aligned_cols=43 Identities=5% Similarity=-0.027 Sum_probs=33.8
Q ss_pred HHHHHHHHhhccchHHHHHhhhh-ccchhHHHhHHHHHHHHhhc
Q psy13328 25 GEQFTEIFIKNHENVSLVLGYLE-EFDFRVRWSAVKLLTGLLLN 67 (68)
Q Consensus 25 g~~ftE~f~k~~eNItLLL~lLe-e~DF~VR~~avqLLTaLL~n 67 (68)
|...=+.|-+.|+....++.+|. ..+-.||+.|.++|...++.
T Consensus 45 A~~~L~~~~~~p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~ 88 (963)
T 2x19_B 45 AQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQYFGASALHIKISR 88 (963)
T ss_dssp HHHHHHHHHHSTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Confidence 34444567777999999999985 46889999999999987753
No 25
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=48.04 E-value=18 Score=27.16 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=24.4
Q ss_pred hHHHHHhhhhccchhHHHhHHHHHHHHhh
Q psy13328 38 NVSLVLGYLEEFDFRVRWSAVKLLTGLLL 66 (68)
Q Consensus 38 NItLLL~lLee~DF~VR~~avqLLTaLL~ 66 (68)
....++.+|...|-+||..|+.+|..|.+
T Consensus 351 ~~~~i~~~l~d~d~~Ir~~alelL~~l~~ 379 (618)
T 1w63_A 351 HRSTIVDCLKDLDVSIKRRAMELSFALVN 379 (618)
T ss_dssp GHHHHHHGGGSSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHcc
Confidence 44578888899999999999999988765
No 26
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=42.28 E-value=33 Score=23.85 Aligned_cols=35 Identities=17% Similarity=0.346 Sum_probs=29.6
Q ss_pred HHhhccchHHHHHhhhhccchhHHHhHHHHHHHHhh
Q psy13328 31 IFIKNHENVSLVLGYLEEFDFRVRWSAVKLLTGLLL 66 (68)
Q Consensus 31 ~f~k~~eNItLLL~lLee~DF~VR~~avqLLTaLL~ 66 (68)
.|++ .+-|..|+.+|...|+.||..|.-+|+.|..
T Consensus 162 ~~~~-~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~ 196 (296)
T 1xqr_A 162 QFLR-LDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV 196 (296)
T ss_dssp HHHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 4444 4568899999999999999999999999875
No 27
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=42.11 E-value=45 Score=22.26 Aligned_cols=32 Identities=13% Similarity=-0.123 Sum_probs=26.3
Q ss_pred ccchHHHHHhhhhcc--chhHHHhHHHHHHHHhh
Q psy13328 35 NHENVSLVLGYLEEF--DFRVRWSAVKLLTGLLL 66 (68)
Q Consensus 35 ~~eNItLLL~lLee~--DF~VR~~avqLLTaLL~ 66 (68)
.++.+..|+.+|... +..||..|..+|..++.
T Consensus 33 ~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~ 66 (462)
T 1ibr_B 33 LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLT 66 (462)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcc
Confidence 477788888888664 78999999999998864
No 28
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=42.03 E-value=29 Score=23.19 Aligned_cols=31 Identities=10% Similarity=0.062 Sum_probs=25.9
Q ss_pred cchHHHHHhhhhccchhHHHhHHHHHHHHhh
Q psy13328 36 HENVSLVLGYLEEFDFRVRWSAVKLLTGLLL 66 (68)
Q Consensus 36 ~eNItLLL~lLee~DF~VR~~avqLLTaLL~ 66 (68)
+.-+..|+.+|...+..||..|...|..+..
T Consensus 407 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3456778899999999999999999988764
No 29
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=40.67 E-value=36 Score=24.56 Aligned_cols=34 Identities=6% Similarity=0.146 Sum_probs=29.9
Q ss_pred hhccchHHHHHhhhhccchhHHHhHHHHHHHHhh
Q psy13328 33 IKNHENVSLVLGYLEEFDFRVRWSAVKLLTGLLL 66 (68)
Q Consensus 33 ~k~~eNItLLL~lLee~DF~VR~~avqLLTaLL~ 66 (68)
+.+.+-|..|+++|+..|-.++..++..|..|+.
T Consensus 397 L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 397 LVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 430 (510)
T ss_dssp HHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4456778999999999999999999999998874
No 30
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=40.40 E-value=29 Score=24.45 Aligned_cols=32 Identities=9% Similarity=0.151 Sum_probs=27.8
Q ss_pred cchHHHHHhhhhccchhHHHhHHHHHHHHhhc
Q psy13328 36 HENVSLVLGYLEEFDFRVRWSAVKLLTGLLLN 67 (68)
Q Consensus 36 ~eNItLLL~lLee~DF~VR~~avqLLTaLL~n 67 (68)
.+-|+.|+.+|...|+.||..|+..|..|..+
T Consensus 370 ~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 370 AGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 45678899999999999999999999988753
No 31
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=40.05 E-value=39 Score=23.78 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=28.6
Q ss_pred ccchHHHHHhhhhccchhHHHhHHHHHHHHhh
Q psy13328 35 NHENVSLVLGYLEEFDFRVRWSAVKLLTGLLL 66 (68)
Q Consensus 35 ~~eNItLLL~lLee~DF~VR~~avqLLTaLL~ 66 (68)
+..-|..|+.+|...|-.||..++..|..|+.
T Consensus 412 ~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 412 SEGCIKPLCDLLICPDIRIVTVCLEGLENILK 443 (528)
T ss_dssp HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999875
No 32
>1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo sapiens} SCOP: a.29.7.1 PDB: 1r3b_A
Probab=39.87 E-value=23 Score=24.21 Aligned_cols=31 Identities=10% Similarity=0.201 Sum_probs=25.8
Q ss_pred CCcchhHHHHHHHHHhhccchHHHHHhhhhc
Q psy13328 18 IHREISVGEQFTEIFIKNHENVSLVLGYLEE 48 (68)
Q Consensus 18 ~~~~deig~~ftE~f~k~~eNItLLL~lLee 48 (68)
++++.|.++|+|+....=-.+|.+|.+.+.+
T Consensus 16 lP~g~d~~eWla~~~~df~~~in~ly~~i~e 46 (185)
T 1pi1_A 16 LPEGEDLNEWIAVNTVDFFNQINMLYGTITE 46 (185)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHTGG
T ss_pred CcCCCchhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 4667899999999888877888888888765
No 33
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=39.63 E-value=39 Score=24.40 Aligned_cols=34 Identities=6% Similarity=0.146 Sum_probs=29.7
Q ss_pred hhccchHHHHHhhhhccchhHHHhHHHHHHHHhh
Q psy13328 33 IKNHENVSLVLGYLEEFDFRVRWSAVKLLTGLLL 66 (68)
Q Consensus 33 ~k~~eNItLLL~lLee~DF~VR~~avqLLTaLL~ 66 (68)
+.+.+-|..|+++|...|-.++..++.-|..|+.
T Consensus 416 l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 416 LVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4456778999999999999999999999999874
No 34
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=38.91 E-value=41 Score=26.60 Aligned_cols=43 Identities=14% Similarity=0.195 Sum_probs=34.6
Q ss_pred HHHHHHHHhhccchHHHHHhhhh-ccchhHHHhHHHHHHHHhhc
Q psy13328 25 GEQFTEIFIKNHENVSLVLGYLE-EFDFRVRWSAVKLLTGLLLN 67 (68)
Q Consensus 25 g~~ftE~f~k~~eNItLLL~lLe-e~DF~VR~~avqLLTaLL~n 67 (68)
|++.=+.|-+.|+....++.+|. ..+-+||..|.++|...++.
T Consensus 36 Ae~~L~~~~~~p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~ 79 (1049)
T 3m1i_C 36 AQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITR 79 (1049)
T ss_dssp HHHHHHHHHHSTTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh
Confidence 44444677888999999999985 46899999999999988764
No 35
>2krx_A ASL3597 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Nostoc SP}
Probab=37.57 E-value=2.3 Score=27.21 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=30.8
Q ss_pred CCCCCCc---chhHHHHHHHHHhhcc-chHHHHHhhh-----------h-------ccchhHHHhHHHH
Q psy13328 14 PEGAIHR---EISVGEQFTEIFIKNH-ENVSLVLGYL-----------E-------EFDFRVRWSAVKL 60 (68)
Q Consensus 14 ~e~s~~~---~deig~~ftE~f~k~~-eNItLLL~lL-----------e-------e~DF~VR~~avqL 60 (68)
|++.+++ ..|+=.|+.+.+.+.| ++.+.=|.-+ + .+++||-||||+|
T Consensus 16 Ep~~~EqfLT~~Ell~~Lk~~L~~~~~~~LP~dL~~~~s~~~qaq~Lldt~CELei~pG~~lQWYaVRL 84 (94)
T 2krx_A 16 ETNQPEQFLTTIELLEKLKGELEKISFSDLPLELQKLDSLPAQAQHLIDTSCELDVGAGKYLQWYAVRL 84 (94)
T ss_dssp ESSSCSEEECHHHHHHHHHHHHHHSCTTTSCHHHHHCCCHHHHHHHHHHHCCCEEEETTEEEEEEECCC
T ss_pred cCCCCcccCCHHHHHHHHHHHHHhCccccCCHHHHhCCCHHHHHHHHHHheeeeeeCCCCEEEEEEEEE
Confidence 4455543 4899999999999998 6665533222 2 2566777777764
No 36
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=37.49 E-value=42 Score=23.88 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=31.3
Q ss_pred hhccchHHHHHhhhhccchhHHHhHHHHHHHHhhcC
Q psy13328 33 IKNHENVSLVLGYLEEFDFRVRWSAVKLLTGLLLNR 68 (68)
Q Consensus 33 ~k~~eNItLLL~lLee~DF~VR~~avqLLTaLL~nR 68 (68)
+.+..=|..|..+|...+..+|..|...|..|+.++
T Consensus 301 i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 301 LWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 345677899999999999999999999999998764
No 37
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=37.33 E-value=30 Score=24.53 Aligned_cols=32 Identities=9% Similarity=0.141 Sum_probs=28.0
Q ss_pred ccchHHHHHhhhhccchhHHHhHHHHHHHHhh
Q psy13328 35 NHENVSLVLGYLEEFDFRVRWSAVKLLTGLLL 66 (68)
Q Consensus 35 ~~eNItLLL~lLee~DF~VR~~avqLLTaLL~ 66 (68)
+..-|..|+.+|...++.||..|+..|..|..
T Consensus 381 ~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~ 412 (530)
T 1wa5_B 381 DANLIPPLVKLLEVAEYKTKKEACWAISNASS 412 (530)
T ss_dssp HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 35678899999999999999999999998865
No 38
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=37.23 E-value=36 Score=24.60 Aligned_cols=32 Identities=28% Similarity=0.384 Sum_probs=27.7
Q ss_pred ccchHHHHHhhhhccchhHHHhHHHHHHHHhh
Q psy13328 35 NHENVSLVLGYLEEFDFRVRWSAVKLLTGLLL 66 (68)
Q Consensus 35 ~~eNItLLL~lLee~DF~VR~~avqLLTaLL~ 66 (68)
+.+-|..|+.+|...|+.||..|...|.+|..
T Consensus 356 ~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 356 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 387 (510)
T ss_dssp HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 44567889999999999999999999988865
No 39
>3im4_C Dual specificity A kinase-anchoring protein 2; four-helix bundle, acetylation, CAMP, CAMP-binding, disulfide bond, nucleotide-binding; 2.29A {Homo sapiens} PDB: 3tmh_D
Probab=36.21 E-value=14 Score=20.88 Aligned_cols=27 Identities=0% Similarity=0.019 Sum_probs=20.4
Q ss_pred CCCCCcchhHHHHHHHHHhhccchHHH
Q psy13328 15 EGAIHREISVGEQFTEIFIKNHENVSL 41 (68)
Q Consensus 15 e~s~~~~deig~~ftE~f~k~~eNItL 41 (68)
-++.++.+|+|=+.|+|.+++--+++.
T Consensus 8 ~~~D~aqEEMAWqIA~MIV~DV~~~t~ 34 (45)
T 3im4_C 8 GNTDEAQEELAWKIAKMIVSDVMQQAQ 34 (45)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355677899999999999998776664
No 40
>2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1; homodimer, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=36.18 E-value=27 Score=24.96 Aligned_cols=31 Identities=13% Similarity=0.217 Sum_probs=25.2
Q ss_pred CCcchhHHHHHHHHHhhccchHHHHHhhhhc
Q psy13328 18 IHREISVGEQFTEIFIKNHENVSLVLGYLEE 48 (68)
Q Consensus 18 ~~~~deig~~ftE~f~k~~eNItLLL~lLee 48 (68)
.+...|+++|+|+..+.=-.+|.++.+.+.+
T Consensus 69 lP~g~D~neWlA~h~~dFfn~in~lyg~ise 99 (236)
T 2hjn_A 69 LPRGEDENEWLAVHCVDFYNQINMLYGSITE 99 (236)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CcCCCchhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 4667899999998877777788888888765
No 41
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=35.54 E-value=59 Score=26.41 Aligned_cols=45 Identities=9% Similarity=0.041 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHhhccchHHHHHhhhhcc---chhHHHhHHHHHHHHhh
Q psy13328 22 ISVGEQFTEIFIKNHENVSLVLGYLEEF---DFRVRWSAVKLLTGLLL 66 (68)
Q Consensus 22 deig~~ftE~f~k~~eNItLLL~lLee~---DF~VR~~avqLLTaLL~ 66 (68)
-.-+..+-+.|-+.++-....+.+|... +..||+.|.|+|...++
T Consensus 25 r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~ 72 (980)
T 3ibv_A 25 KQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR 72 (980)
T ss_dssp HHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 3457778888999999999999999764 79999999999987653
No 42
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=35.36 E-value=63 Score=23.83 Aligned_cols=43 Identities=12% Similarity=0.013 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhccc------hHHHHHhhhhccchhHHHhHHHHHHHHhh
Q psy13328 24 VGEQFTEIFIKNHE------NVSLVLGYLEEFDFRVRWSAVKLLTGLLL 66 (68)
Q Consensus 24 ig~~ftE~f~k~~e------NItLLL~lLee~DF~VR~~avqLLTaLL~ 66 (68)
.+.-++.++-+.++ -+..|..+|.+.|-.||..|+..|..+..
T Consensus 141 A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 141 AAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISE 189 (591)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 34445555554444 45788889999999999999999988754
No 43
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=34.94 E-value=23 Score=26.70 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=23.5
Q ss_pred HHHhhhhccchhHHHhHHHHHHHHhhcC
Q psy13328 41 LVLGYLEEFDFRVRWSAVKLLTGLLLNR 68 (68)
Q Consensus 41 LLL~lLee~DF~VR~~avqLLTaLL~nR 68 (68)
..-.||+...+-.|+-|+|||.-||..|
T Consensus 213 ~y~~Ll~S~NYVTkRQSlKLLgelLldr 240 (341)
T 1upk_A 213 EYEKLLHSENYVTKRQSLKLLGELLLDR 240 (341)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHhcCCcchhHHHHHHHHHHHHhCc
Confidence 3445788889999999999999999775
No 44
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=34.84 E-value=30 Score=23.98 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=16.9
Q ss_pred HHHHHhhhhccchhHHHhHHHHHHHHh
Q psy13328 39 VSLVLGYLEEFDFRVRWSAVKLLTGLL 65 (68)
Q Consensus 39 ItLLL~lLee~DF~VR~~avqLLTaLL 65 (68)
++.+..+++..+..||..|++.|..+.
T Consensus 244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~ 270 (588)
T 1b3u_A 244 MPTLRQAAEDKSWRVRYMVADKFTELQ 270 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 445555666666777777776666554
No 45
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=34.52 E-value=48 Score=23.47 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=28.4
Q ss_pred ccchHHHHHhhhhccchhHHHhHHHHHHHHhh
Q psy13328 35 NHENVSLVLGYLEEFDFRVRWSAVKLLTGLLL 66 (68)
Q Consensus 35 ~~eNItLLL~lLee~DF~VR~~avqLLTaLL~ 66 (68)
..+-|..|+.+|+..|-.||..++..|..|+.
T Consensus 426 ~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 426 SQGCIKPLCDLLEIADNRIIEVTLDALENILK 457 (530)
T ss_dssp HTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999998875
No 46
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=33.90 E-value=63 Score=23.51 Aligned_cols=48 Identities=17% Similarity=0.296 Sum_probs=37.2
Q ss_pred chhHHHHHHHHHhhcc---------------chHHHHHhhhhccchhHHHhHHHHHHHHhhcC
Q psy13328 21 EISVGEQFTEIFIKNH---------------ENVSLVLGYLEEFDFRVRWSAVKLLTGLLLNR 68 (68)
Q Consensus 21 ~deig~~ftE~f~k~~---------------eNItLLL~lLee~DF~VR~~avqLLTaLL~nR 68 (68)
+.|+=..++|..+|+. ++|..|+.+++.-|-+..+|.-.|-.-||.++
T Consensus 6 ~~E~la~y~D~~lkk~~~~k~~~~~e~e~~L~~v~~lf~~l~~KDvF~~~Y~~~LakRLL~~~ 68 (382)
T 3dpl_C 6 CPEELANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRRLILDI 68 (382)
T ss_dssp SHHHHHHHHHHHHBSSHHHHTSCHHHHHHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCC
Confidence 3466777888888764 56888999999999999998887777777653
No 47
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=33.74 E-value=46 Score=21.12 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=13.8
Q ss_pred HHHHhhhhccchhHHHhHHHHHHHHh
Q psy13328 40 SLVLGYLEEFDFRVRWSAVKLLTGLL 65 (68)
Q Consensus 40 tLLL~lLee~DF~VR~~avqLLTaLL 65 (68)
..++..|......||..++.+|..++
T Consensus 136 ~~l~~~l~~~~~~vr~~~l~~l~~~l 161 (242)
T 2qk2_A 136 ESIVESLSNKNPSVKSETALFIARAL 161 (242)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 33444455555556666666555543
No 48
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=32.62 E-value=25 Score=23.57 Aligned_cols=12 Identities=8% Similarity=-0.050 Sum_probs=10.5
Q ss_pred hhHHHhHHHHHH
Q psy13328 51 FRVRWSAVKLLT 62 (68)
Q Consensus 51 F~VR~~avqLLT 62 (68)
+..||.|+|||-
T Consensus 198 ~~~r~~a~~~le 209 (256)
T 3iby_A 198 SFAYYFSRRLAE 209 (256)
T ss_dssp HHHHHHHHHHHH
T ss_pred cChhHHHHHHHC
Confidence 688999999984
No 49
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=32.34 E-value=44 Score=22.99 Aligned_cols=32 Identities=22% Similarity=0.211 Sum_probs=28.4
Q ss_pred ccchHHHHHhhhhccchhHHHhHHHHHHHHhh
Q psy13328 35 NHENVSLVLGYLEEFDFRVRWSAVKLLTGLLL 66 (68)
Q Consensus 35 ~~eNItLLL~lLee~DF~VR~~avqLLTaLL~ 66 (68)
+.+-|..|+.+|...|-.+|..|+..|..|..
T Consensus 99 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 130 (529)
T 1jdh_A 99 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 130 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 34788999999999999999999999999865
No 50
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=32.27 E-value=38 Score=26.10 Aligned_cols=43 Identities=7% Similarity=0.028 Sum_probs=33.9
Q ss_pred HHHHHHHHhhccchHHHHHhhhh-ccchhHHHhHHHHHHHHhhc
Q psy13328 25 GEQFTEIFIKNHENVSLVLGYLE-EFDFRVRWSAVKLLTGLLLN 67 (68)
Q Consensus 25 g~~ftE~f~k~~eNItLLL~lLe-e~DF~VR~~avqLLTaLL~n 67 (68)
|..+=+.|-+.|+....++.+|. ..+..||..|.++|...++.
T Consensus 27 A~~~L~~~~~~p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~ 70 (971)
T 2x1g_F 27 THEWLTDAEASPQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMK 70 (971)
T ss_dssp -CHHHHHTTTSTHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 44455667788998889999985 46899999999999987753
No 51
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=31.50 E-value=26 Score=29.37 Aligned_cols=43 Identities=9% Similarity=0.175 Sum_probs=32.6
Q ss_pred HHHHHHHHhhccchHHHHHhhhhc-cchhHHHhHHHHHHHHhhc
Q psy13328 25 GEQFTEIFIKNHENVSLVLGYLEE-FDFRVRWSAVKLLTGLLLN 67 (68)
Q Consensus 25 g~~ftE~f~k~~eNItLLL~lLee-~DF~VR~~avqLLTaLL~n 67 (68)
|..+-+.|-+.|+-...++.+|.. .+-+||+.|+++|...++.
T Consensus 48 A~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~ 91 (1073)
T 3gjx_A 48 AQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKT 91 (1073)
T ss_dssp HHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence 445556667788899999999865 4889999999999988764
No 52
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=31.44 E-value=49 Score=22.76 Aligned_cols=31 Identities=16% Similarity=0.062 Sum_probs=26.3
Q ss_pred cchHHHHHhhhhccchhHHHhHHHHHHHHhh
Q psy13328 36 HENVSLVLGYLEEFDFRVRWSAVKLLTGLLL 66 (68)
Q Consensus 36 ~eNItLLL~lLee~DF~VR~~avqLLTaLL~ 66 (68)
..-|..|..+|...|-.||..|++.|..|..
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~ 46 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSK 46 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHc
Confidence 4568889999999999999999999988864
No 53
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=30.77 E-value=35 Score=25.92 Aligned_cols=30 Identities=33% Similarity=0.369 Sum_probs=24.4
Q ss_pred chHHHHHhhhh-ccchhHHHhHHHHHHHHhh
Q psy13328 37 ENVSLVLGYLE-EFDFRVRWSAVKLLTGLLL 66 (68)
Q Consensus 37 eNItLLL~lLe-e~DF~VR~~avqLLTaLL~ 66 (68)
.+...++.+|. ..|-+||.-|+.+|..|.+
T Consensus 368 ~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~ 398 (621)
T 2vgl_A 368 THIETVINALKTERDVSVRQRAVDLLYAMCD 398 (621)
T ss_dssp TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhccCCCHhHHHHHHHHHHHHcC
Confidence 35566777888 9999999999999988754
No 54
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=30.20 E-value=55 Score=23.60 Aligned_cols=33 Identities=27% Similarity=0.364 Sum_probs=28.2
Q ss_pred hccchHHHHHhhhhccchhHHHhHHHHHHHHhh
Q psy13328 34 KNHENVSLVLGYLEEFDFRVRWSAVKLLTGLLL 66 (68)
Q Consensus 34 k~~eNItLLL~lLee~DF~VR~~avqLLTaLL~ 66 (68)
.+.+-|..|+.+|...++.||..|...|..|..
T Consensus 374 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 374 VNHGLVPFLVGVLSKADFKTQKAAAWAITNYTS 406 (529)
T ss_dssp HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 345668889999999999999999999988864
No 55
>1vf6_C Maguk P55 subfamily member 5; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Mus musculus} SCOP: a.194.1.1
Probab=29.96 E-value=16 Score=22.49 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=18.8
Q ss_pred hhccchHHHHHhhhhccchhH
Q psy13328 33 IKNHENVSLVLGYLEEFDFRV 53 (68)
Q Consensus 33 ~k~~eNItLLL~lLee~DF~V 53 (68)
.|.|+-|.+|+.|+...||.-
T Consensus 33 sQSQeDi~lllqL~~~~DFQ~ 53 (72)
T 1vf6_C 33 SQSQEDISLLLQLVQNRDFQN 53 (72)
T ss_dssp HHHHHHHHHHHHHHHCHHHHH
T ss_pred hhhHHHHHHHHHHHhhHHHHH
Confidence 577899999999999999974
No 56
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=29.92 E-value=54 Score=22.70 Aligned_cols=29 Identities=14% Similarity=-0.068 Sum_probs=20.3
Q ss_pred hHHHHHhhhhccchhHHHhHHHHHHHHhh
Q psy13328 38 NVSLVLGYLEEFDFRVRWSAVKLLTGLLL 66 (68)
Q Consensus 38 NItLLL~lLee~DF~VR~~avqLLTaLL~ 66 (68)
=+..+..++...+..||..|++.|..+..
T Consensus 165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~ 193 (588)
T 1b3u_A 165 LRQYFRNLCSDDTPMVRRAAASKLGEFAK 193 (588)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 34555666677788888888887777653
No 57
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=29.70 E-value=58 Score=24.29 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=31.2
Q ss_pred hhccchHHHHHhhhhccchhHHHhHHHHHHHHhhcC
Q psy13328 33 IKNHENVSLVLGYLEEFDFRVRWSAVKLLTGLLLNR 68 (68)
Q Consensus 33 ~k~~eNItLLL~lLee~DF~VR~~avqLLTaLL~nR 68 (68)
+-+..-|..|..+|...+..+|-.|..-|..|+.++
T Consensus 417 i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 417 LWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 344567899999999999999999999999999864
No 58
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=28.32 E-value=72 Score=26.02 Aligned_cols=39 Identities=5% Similarity=0.089 Sum_probs=33.1
Q ss_pred HHHHhhccchHHHHHhhhhccchhHHHhHHHHHHHHhhc
Q psy13328 29 TEIFIKNHENVSLVLGYLEEFDFRVRWSAVKLLTGLLLN 67 (68)
Q Consensus 29 tE~f~k~~eNItLLL~lLee~DF~VR~~avqLLTaLL~n 67 (68)
...+++++.-|..|..+|...|+.+|..|+-.|.+|+++
T Consensus 700 ~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 700 CEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp HHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 344555578899999999999999999999999998753
No 59
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=27.84 E-value=1.4e+02 Score=20.09 Aligned_cols=52 Identities=8% Similarity=0.106 Sum_probs=37.5
Q ss_pred CCCCcchhHHHHHHHHHhhccchHHHHH----hhhhccchhHHHhHHHHHHHHhhc
Q psy13328 16 GAIHREISVGEQFTEIFIKNHENVSLVL----GYLEEFDFRVRWSAVKLLTGLLLN 67 (68)
Q Consensus 16 ~s~~~~deig~~ftE~f~k~~eNItLLL----~lLee~DF~VR~~avqLLTaLL~n 67 (68)
..++.+-.+-..++|+.-+.+++-.-.+ .-|...+-.|-+.|+.||-++..|
T Consensus 20 ~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkN 75 (226)
T 3zyq_A 20 LLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKN 75 (226)
T ss_dssp TCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 3445556677788999877766654444 444568889999999999888765
No 60
>3arc_F Cytochrome B559 subunit beta; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_F* 3a0b_F* 3a0h_F* 1w5c_F* 3kzi_F* 3bz1_F* 1s5l_F* 2axt_F* 3bz2_F* 3prq_F* 3prr_F*
Probab=27.81 E-value=23 Score=19.90 Aligned_cols=14 Identities=50% Similarity=0.641 Sum_probs=10.6
Q ss_pred ccchhHHHhHHHHH
Q psy13328 48 EFDFRVRWSAVKLL 61 (68)
Q Consensus 48 e~DF~VR~~avqLL 61 (68)
-+=|-|||.||--|
T Consensus 12 yPIfTvRWlAvH~l 25 (44)
T 3arc_F 12 YPIFTVRWVAVHTL 25 (44)
T ss_dssp CCSSCHHHHHHHHH
T ss_pred cceeeeehhhhhcc
Confidence 35688999988655
No 61
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=27.36 E-value=59 Score=26.69 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhccchHHHHHhhhhc-cchhHHHhHHHHHHHHhhc
Q psy13328 24 VGEQFTEIFIKNHENVSLVLGYLEE-FDFRVRWSAVKLLTGLLLN 67 (68)
Q Consensus 24 ig~~ftE~f~k~~eNItLLL~lLee-~DF~VR~~avqLLTaLL~n 67 (68)
-|..+-+.|-+.++-...++.+|.. .+-.||+.|.++|...++.
T Consensus 35 ~A~~~L~~~q~sp~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~ 79 (1023)
T 4hat_C 35 QAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITR 79 (1023)
T ss_dssp HHHHHHHHHHHCTTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence 3556667888899999999999964 5789999999999887653
No 62
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=26.02 E-value=89 Score=23.38 Aligned_cols=39 Identities=15% Similarity=0.211 Sum_probs=30.9
Q ss_pred HHHHHHhhccchHHHHHhhhhccchhHHHhHHHHHHHHhh
Q psy13328 27 QFTEIFIKNHENVSLVLGYLEEFDFRVRWSAVKLLTGLLL 66 (68)
Q Consensus 27 ~ftE~f~k~~eNItLLL~lLee~DF~VR~~avqLLTaLL~ 66 (68)
.||.+||.+.. ++.|+...++-+=-.--|+++-|..|..
T Consensus 151 ~Fa~EFI~~~G-L~~Li~vi~~~~gN~q~Y~L~AL~~LM~ 189 (339)
T 3dad_A 151 DLVPEFVHSEG-LSCLIRVGAAADHNYQSYILRALGQLML 189 (339)
T ss_dssp THHHHHHHTTH-HHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcc-HHHHHHHHHhcChHHHHHHHHHHHHHHh
Confidence 57889998877 8999999988877777777777766653
No 63
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=25.84 E-value=88 Score=23.66 Aligned_cols=32 Identities=22% Similarity=0.201 Sum_probs=27.6
Q ss_pred ccchHHHHHhhhhccchhHHHhHHHHHHHHhh
Q psy13328 35 NHENVSLVLGYLEEFDFRVRWSAVKLLTGLLL 66 (68)
Q Consensus 35 ~~eNItLLL~lLee~DF~VR~~avqLLTaLL~ 66 (68)
.+.-+.+++.++......||-.|..+|..+.+
T Consensus 627 ~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~ 658 (852)
T 4fdd_A 627 RSNILTLMYQCMQDKMPEVRQSSFALLGDLTK 658 (852)
T ss_dssp TCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Confidence 36778899999988889999999999998764
No 64
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=24.88 E-value=80 Score=23.24 Aligned_cols=31 Identities=23% Similarity=0.209 Sum_probs=27.8
Q ss_pred cchHHHHHhhhhccchhHHHhHHHHHHHHhh
Q psy13328 36 HENVSLVLGYLEEFDFRVRWSAVKLLTGLLL 66 (68)
Q Consensus 36 ~eNItLLL~lLee~DF~VR~~avqLLTaLL~ 66 (68)
..-|..|+.+|...|-.||..|+..|..|..
T Consensus 97 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~ 127 (644)
T 2z6h_A 97 SGGIPALVKMLGSPVDSVLFYAITTLHNLLL 127 (644)
T ss_dssp TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999875
No 65
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=24.72 E-value=75 Score=23.47 Aligned_cols=30 Identities=10% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHhhhhccchhHHHhHHHHHHHHhhcC
Q psy13328 39 VSLVLGYLEEFDFRVRWSAVKLLTGLLLNR 68 (68)
Q Consensus 39 ItLLL~lLee~DF~VR~~avqLLTaLL~nR 68 (68)
+..+.+++..+|-+|--.|+.+||.+.+..
T Consensus 152 ~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 152 RTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhhccc
No 66
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=24.32 E-value=67 Score=24.85 Aligned_cols=31 Identities=16% Similarity=0.062 Sum_probs=26.8
Q ss_pred cchHHHHHhhhhccchhHHHhHHHHHHHHhh
Q psy13328 36 HENVSLVLGYLEEFDFRVRWSAVKLLTGLLL 66 (68)
Q Consensus 36 ~eNItLLL~lLee~DF~VR~~avqLLTaLL~ 66 (68)
..-|..|+.+|...|-.||..|++.|..|..
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~ 179 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSK 179 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhC
Confidence 5668899999998899999999999988764
No 67
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=23.91 E-value=1e+02 Score=23.87 Aligned_cols=35 Identities=14% Similarity=0.037 Sum_probs=29.8
Q ss_pred hhccchHHHHHhhhhccchhHHHhHHHHHHHHhhc
Q psy13328 33 IKNHENVSLVLGYLEEFDFRVRWSAVKLLTGLLLN 67 (68)
Q Consensus 33 ~k~~eNItLLL~lLee~DF~VR~~avqLLTaLL~n 67 (68)
+.+.+-|..|..++...+-.||.+|...|..|..+
T Consensus 630 i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~ 664 (780)
T 2z6g_A 630 IEAEGATAPLTELLHSRNEGVATYAAAVLFRMSED 664 (780)
T ss_dssp HHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 44556688999999999999999999999888764
No 68
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=23.52 E-value=28 Score=22.74 Aligned_cols=40 Identities=30% Similarity=0.441 Sum_probs=29.0
Q ss_pred CcchhHHHHHHHHHhhc-------cchHHHHHhhhhccchh----HHHhHHH
Q psy13328 19 HREISVGEQFTEIFIKN-------HENVSLVLGYLEEFDFR----VRWSAVK 59 (68)
Q Consensus 19 ~~~deig~~ftE~f~k~-------~eNItLLL~lLee~DF~----VR~~avq 59 (68)
...+|| ++||..|.++ |.+|.+.|+.|.-.+|. .|.-+++
T Consensus 10 ~~~~~l-~~fa~~fk~~ri~lg~tQ~~vg~alg~l~g~~~Sqtti~rFE~l~ 60 (164)
T 2xsd_C 10 PSSDDL-EQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ 60 (164)
T ss_dssp CCHHHH-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTC
T ss_pred cchhHH-HHHHHHHHHHHhhcCCcccccccccccccCCCcCcchhhhhhccC
Confidence 344666 8999999874 67888999998887776 4554433
No 69
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=23.29 E-value=1e+02 Score=22.04 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=23.1
Q ss_pred HHHHHHHHh-hccc-hHHHHHhhhhccchhHHHhHHHH
Q psy13328 25 GEQFTEIFI-KNHE-NVSLVLGYLEEFDFRVRWSAVKL 60 (68)
Q Consensus 25 g~~ftE~f~-k~~e-NItLLL~lLee~DF~VR~~avqL 60 (68)
+..|.+... ..++ -+..+...+...++.||+.|+--
T Consensus 125 A~a~~~~~~~~~pe~~l~~~~~W~~d~n~~VRR~Ase~ 162 (240)
T 3l9t_A 125 AKAFDEFCKKIEYKKALPIIDEWLKSSNLHTRRAATEG 162 (240)
T ss_dssp HHHHHHHHHHHCTTTTHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 334444443 4555 35677778888888888877643
No 70
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=22.75 E-value=78 Score=23.26 Aligned_cols=29 Identities=10% Similarity=0.071 Sum_probs=24.7
Q ss_pred hHHHHHhhhhccchhHHHhHHHHHHHHhh
Q psy13328 38 NVSLVLGYLEEFDFRVRWSAVKLLTGLLL 66 (68)
Q Consensus 38 NItLLL~lLee~DF~VR~~avqLLTaLL~ 66 (68)
-+..|+.+|......||..|...|..+..
T Consensus 409 ~l~~l~~~l~d~~~~vr~~a~~~l~~~~~ 437 (876)
T 1qgr_A 409 AMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (876)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 46778888899999999999999988764
No 71
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=22.69 E-value=1.1e+02 Score=23.02 Aligned_cols=43 Identities=14% Similarity=-0.061 Sum_probs=31.4
Q ss_pred HHHHHHHHhhccchHHHHHhhhh---ccchhHHHhHHHHHHHHhhc
Q psy13328 25 GEQFTEIFIKNHENVSLVLGYLE---EFDFRVRWSAVKLLTGLLLN 67 (68)
Q Consensus 25 g~~ftE~f~k~~eNItLLL~lLe---e~DF~VR~~avqLLTaLL~n 67 (68)
|++.=+.+-+.|+....|+.++. ..+-.||..|..+|-..++.
T Consensus 33 Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~ 78 (852)
T 4fdd_A 33 VQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKA 78 (852)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHH
Confidence 33333456667777777788775 67899999999998877653
No 72
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=22.54 E-value=1e+02 Score=25.14 Aligned_cols=36 Identities=17% Similarity=0.116 Sum_probs=30.9
Q ss_pred HHhhccchHHHHHhhhhccchhHHHhHHHHHHHHhh
Q psy13328 31 IFIKNHENVSLVLGYLEEFDFRVRWSAVKLLTGLLL 66 (68)
Q Consensus 31 ~f~k~~eNItLLL~lLee~DF~VR~~avqLLTaLL~ 66 (68)
.|....+-+..|+.||+..|+-+|..|...|.+|..
T Consensus 659 ~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 659 MFEGNNDRVKFLALLCEDEDEETATACAGALAIITS 694 (810)
T ss_dssp HHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Confidence 344446789999999999999999999999999875
No 73
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=22.30 E-value=1.3e+02 Score=24.86 Aligned_cols=43 Identities=16% Similarity=0.017 Sum_probs=31.0
Q ss_pred HHHHHHHHhhccchHHHHHhhh--hccchhHHHhHHHHHHHHhhc
Q psy13328 25 GEQFTEIFIKNHENVSLVLGYL--EEFDFRVRWSAVKLLTGLLLN 67 (68)
Q Consensus 25 g~~ftE~f~k~~eNItLLL~lL--ee~DF~VR~~avqLLTaLL~n 67 (68)
|..+=+.|-+.++....+...| ...+-+||..|.++|...++.
T Consensus 33 Ae~~L~~~~~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~ 77 (1204)
T 3a6p_A 33 ALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKF 77 (1204)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 5555567777776655555544 467899999999999987754
No 74
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=21.92 E-value=85 Score=23.08 Aligned_cols=32 Identities=16% Similarity=0.057 Sum_probs=27.5
Q ss_pred ccchHHHHHhhhhccchhHHHhHHHHHHHHhh
Q psy13328 35 NHENVSLVLGYLEEFDFRVRWSAVKLLTGLLL 66 (68)
Q Consensus 35 ~~eNItLLL~lLee~DF~VR~~avqLLTaLL~ 66 (68)
...-|..|..+|...|-.||..|++.|..|..
T Consensus 12 ~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~ 43 (644)
T 2z6h_A 12 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK 43 (644)
T ss_dssp CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHT
T ss_pred hhchHHHHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence 34568999999998899999999999998865
No 75
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=21.54 E-value=96 Score=22.81 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=34.8
Q ss_pred HHHHHHHHhh---ccchHHHHHhhhhccchhHHHhHHHHHHHHhhcC
Q psy13328 25 GEQFTEIFIK---NHENVSLVLGYLEEFDFRVRWSAVKLLTGLLLNR 68 (68)
Q Consensus 25 g~~ftE~f~k---~~eNItLLL~lLee~DF~VR~~avqLLTaLL~nR 68 (68)
|+++-++.++ +.+.+--|+.+||.-=+-||-+|+.+++++...+
T Consensus 17 ge~~~eii~~a~~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~ 63 (253)
T 2db0_A 17 GEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTR 63 (253)
T ss_dssp TCSHHHHHHHHHHCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHh
Confidence 4555566555 5577888999999999999999999999987643
No 76
>1b79_A DNAB helicase; hexamer, DNA replication, hydrolase; 2.30A {Escherichia coli} SCOP: a.81.1.1 PDB: 1jwe_A
Probab=20.90 E-value=1.2e+02 Score=18.48 Aligned_cols=39 Identities=15% Similarity=0.054 Sum_probs=25.8
Q ss_pred CcchhHHHHHHHHHhhccchHHHHHhhhhccchhHHHhH
Q psy13328 19 HREISVGEQFTEIFIKNHENVSLVLGYLEEFDFRVRWSA 57 (68)
Q Consensus 19 ~~~deig~~ftE~f~k~~eNItLLL~lLee~DF~VR~~a 57 (68)
+.+.|.-..+-=-.+.+++-+..+.+.|...|||...+.
T Consensus 18 P~~~eAEqaVLGalL~d~~~~~~v~~~L~~edFy~~~H~ 56 (119)
T 1b79_A 18 PHSIEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPHR 56 (119)
T ss_dssp CCHHHHHHHHHHHHHHCGGGHHHHHTTCCGGGSSSHHHH
T ss_pred CCcHHHHHHHHHHHHcChHHHHHHHhhCCHHHCCcHHHH
Confidence 344443333333344578899999999999999986553
No 77
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=20.81 E-value=59 Score=21.38 Aligned_cols=11 Identities=55% Similarity=1.195 Sum_probs=9.3
Q ss_pred hhHHHhHHHHH
Q psy13328 51 FRVRWSAVKLL 61 (68)
Q Consensus 51 F~VR~~avqLL 61 (68)
+..||.|+|+|
T Consensus 201 ~~~~~~a~~~l 211 (271)
T 3k53_A 201 YPIRWLALKLL 211 (271)
T ss_dssp SCHHHHHHHHH
T ss_pred cChhHHHHHHH
Confidence 67899999986
No 78
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=20.73 E-value=1.8e+02 Score=18.76 Aligned_cols=50 Identities=14% Similarity=0.034 Sum_probs=36.0
Q ss_pred CCcchhHHHHHHHHHhhccchHHHHHhhh----hccchhHHHhHHHHHHHHhhc
Q psy13328 18 IHREISVGEQFTEIFIKNHENVSLVLGYL----EEFDFRVRWSAVKLLTGLLLN 67 (68)
Q Consensus 18 ~~~~deig~~ftE~f~k~~eNItLLL~lL----ee~DF~VR~~avqLLTaLL~n 67 (68)
.+.+-.+-..++|+.-..+++....+..| ...+-+|.+.|+.||-++..|
T Consensus 29 ~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkN 82 (163)
T 1x5b_A 29 TTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVAN 82 (163)
T ss_dssp SSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34444555678888877776665555554 557889999999999888765
No 79
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=20.60 E-value=1e+02 Score=22.61 Aligned_cols=31 Identities=19% Similarity=0.054 Sum_probs=25.4
Q ss_pred cchHHHHHhhhhc--cchhHHHhHHHHHHHHhh
Q psy13328 36 HENVSLVLGYLEE--FDFRVRWSAVKLLTGLLL 66 (68)
Q Consensus 36 ~eNItLLL~lLee--~DF~VR~~avqLLTaLL~ 66 (68)
++.+..|+.+|.. .+..||..|.++|...+.
T Consensus 38 ~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~ 70 (861)
T 2bpt_A 38 LQFAGLSSQVLIDENTKLEGRILAALTLKNELV 70 (861)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHhhcc
Confidence 7788888888854 589999999999987653
Done!