RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13328
(68 letters)
>gnl|CDD|227429 COG5098, COG5098, Chromosome condensation complex Condensin,
subunit D2 [Chromatin structure and dynamics / Cell
division and chromosome partitioning].
Length = 1128
Score = 27.3 bits (60), Expect = 0.58
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 34 KNHENVSLVLGYLEEFDFRVRWSAVKLLTGLLL 66
+ HE + LV L++ VR +A+KL + LL+
Sbjct: 383 RRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415
>gnl|CDD|214928 smart00944, Pro-kuma_activ, Pro-kumamolisin, activation domain.
This domain is found at the N-terminus of peptidases
belonging to MEROPS peptidase family S53 (sedolisin,
clan SB). The domain adopts a ferredoxin-like fold,
with an alpha+beta sandwich. Cleavage of the domain
results in activation of the peptidase.
Length = 136
Score = 25.7 bits (57), Expect = 1.5
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 26 EQFTEIFIKNHENVSLVLGYLEEFDFRV 53
E+F +F + +V+ VL +LE V
Sbjct: 48 EEFASLFGPSPADVNAVLAWLESHGLTV 75
>gnl|CDD|202276 pfam02541, Ppx-GppA, Ppx/GppA phosphatase family. This family
consists of the N-terminal region of exopolyphosphatase
(Ppx) EC:3.6.1.11 and guanosine pentaphosphate
phospho-hydrolase (GppA) EC:3.6.1.40.
Length = 285
Score = 25.8 bits (57), Expect = 1.7
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 4 RTKDGSTTKLPEGAIHREISVGEQFTEIFIKNH-ENVSLV 42
ST +L E AI R IS ++F EI EN+ V
Sbjct: 23 AEGLNSTGRLNEEAIERTISALKEFAEILQGFGVENIRAV 62
>gnl|CDD|163642 cd07399, MPP_YvnB, Bacillus subtilis YvnB and related proteins,
metallophosphatase domain. YvnB (BSU35040) is an
uncharacterized Bacillus subtilis protein with a
metallophosphatase domain. This family includes
bacterial and eukaryotic proteins similar to YvnB. YvnB
belongs to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 214
Score = 25.0 bits (55), Expect = 3.2
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 9 STTKLPEGAIHREISVGEQFTEIFIKNHENVSLVLG 44
++ +++ G+Q + +K ++NV +VL
Sbjct: 120 DDSRPDSIDYDSDVNDGQQIWDKLVKKNDNVFMVLS 155
>gnl|CDD|233724 TIGR02095, glgA, glycogen/starch synthase, ADP-glucose type. This
family consists of glycogen (or starch) synthases that
use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose
(EC 2.4.1.11) as in animals, as the glucose donor. This
enzyme is found in bacteria and plants. Whether the name
given is glycogen synthase or starch synthase depends on
context, and therefore on substrate [Energy metabolism,
Biosynthesis and degradation of polysaccharides].
Length = 473
Score = 24.9 bits (55), Expect = 3.7
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 26 EQFTEIFIKNHENVSLVLGYLEEF 49
E E+ + NV +++GY E
Sbjct: 335 EALRELAERYPGNVRVIIGYDEAL 358
>gnl|CDD|222566 pfam14134, DUF4301, Domain of unknown function (DUF4301). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 505 and 516 amino
acids in length.
Length = 513
Score = 24.4 bits (54), Expect = 5.1
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Query: 31 IFIKNHENVSLVLGYLEEFDFRVRWSAVKLLTGLLL 66
+FIKN +NV EE V + KLL G L+
Sbjct: 286 VFIKNIDNVV-PDRLKEE---TVLYK--KLLAGKLV 315
>gnl|CDD|220468 pfam09913, DUF2142, Predicted membrane protein (DUF2142). This
domain, found in various hypothetical prokaryotic
proteins, has no known function.
Length = 390
Score = 24.2 bits (53), Expect = 6.9
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 39 VSLVLGYLEEFDFRVRWSAVKLLTGLLL 66
++L+L E R + LL +LL
Sbjct: 180 IALLLRLDESKKITRRLLILLLLASVLL 207
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 23.8 bits (52), Expect = 9.6
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 9/35 (25%)
Query: 42 VLGYLEEFDF---RVRWSAVKLLTG-----LLLNR 68
VLGYL++F F R + VK L+G LLL R
Sbjct: 420 VLGYLQDFLFHPKRAM-TPVKALSGGERNRLLLAR 453
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.407
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,436,289
Number of extensions: 254750
Number of successful extensions: 196
Number of sequences better than 10.0: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 8
Length of query: 68
Length of database: 10,937,602
Length adjustment: 39
Effective length of query: 29
Effective length of database: 9,207,796
Effective search space: 267026084
Effective search space used: 267026084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)