RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13328
         (68 letters)



>3grl_A General vesicular transport factor P115; vesicle transport,
           membrane trafficking, membrane tethering, fusion, snare,
           RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB:
           3gq2_A 2w3c_A
          Length = 651

 Score = 55.9 bits (134), Expect = 3e-11
 Identities = 31/57 (54%), Positives = 38/57 (66%)

Query: 12  KLPEGAIHREISVGEQFTEIFIKNHENVSLVLGYLEEFDFRVRWSAVKLLTGLLLNR 68
           ++ E +  +   +G QFTEIFIK  ENV+L+L  LEEFDF VRW  VKLLT LL   
Sbjct: 97  EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQL 153


>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
          structural genomics; 2.20A {Pyrococcus horikoshii}
          Length = 253

 Score = 28.9 bits (64), Expect = 0.095
 Identities = 9/54 (16%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 14 PEGAIHREISVGEQFTEIFIK---NHENVSLVLGYLEEFDFRVRWSAVKLLTGL 64
           E  I   ++ GE   +I I    +   +  ++  L++  + V  +A+ ++  +
Sbjct: 6  EEFDIREALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVI 59



 Score = 24.3 bits (52), Expect = 3.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 39  VSLVLGYLEEFDFRVRWSAVKLLTGL 64
           +  ++  L + D  VR SAV+ L  L
Sbjct: 183 LPRIINLLHDGDEIVRASAVEALVHL 208


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0627    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,031,166
Number of extensions: 46346
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 4
Length of query: 68
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 30
Effective length of database: 5,640,795
Effective search space: 169223850
Effective search space used: 169223850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)