BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1333
(79 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WK5|A Chain A, Structural Features Of Native Human Thymidine
Phosphorylase And In Complex With 5-Iodouracil
pdb|2WK5|B Chain B, Structural Features Of Native Human Thymidine
Phosphorylase And In Complex With 5-Iodouracil
pdb|2WK5|C Chain C, Structural Features Of Native Human Thymidine
Phosphorylase And In Complex With 5-Iodouracil
pdb|2WK5|D Chain D, Structural Features Of Native Human Thymidine
Phosphorylase And In Complex With 5-Iodouracil
pdb|2WK6|A Chain A, Structural Features Of Native Human Thymidine
Phosphorylase And In Complex With 5-Iodouracil
pdb|2WK6|B Chain B, Structural Features Of Native Human Thymidine
Phosphorylase And In Complex With 5-Iodouracil
Length = 482
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 49/68 (72%), Gaps = 4/68 (5%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEG---IVVDKHSTGGVGDKVSIPLVP 69
AMLMA+ + G+ EET LT+++ SG+ L W PE +VDKHSTGGVGDKVS+ L P
Sbjct: 73 AMLMAIRLRGMDLEETSVLTQALAQSGQQLEW-PEAWRQQLVDKHSTGGVGDKVSLVLAP 131
Query: 70 ALAACGLK 77
ALAACG K
Sbjct: 132 ALAACGCK 139
>pdb|2J0F|A Chain A, Structural Basis For Non-Competitive Product Inhibition In
Human Thymidine Phosphorylase: Implication For Drug
Design
pdb|2J0F|B Chain B, Structural Basis For Non-Competitive Product Inhibition In
Human Thymidine Phosphorylase: Implication For Drug
Design
pdb|2J0F|C Chain C, Structural Basis For Non-Competitive Product Inhibition In
Human Thymidine Phosphorylase: Implication For Drug
Design
pdb|2J0F|D Chain D, Structural Basis For Non-Competitive Product Inhibition In
Human Thymidine Phosphorylase: Implication For Drug
Design
Length = 482
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 49/68 (72%), Gaps = 4/68 (5%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEG---IVVDKHSTGGVGDKVSIPLVP 69
AMLMA+ + G+ EET LT+++ SG+ L W PE +VDKHSTGGVGDKVS+ L P
Sbjct: 73 AMLMAIRLRGMDLEETSVLTQALAQSGQQLEW-PEAWRQQLVDKHSTGGVGDKVSLVLAP 131
Query: 70 ALAACGLK 77
ALAACG K
Sbjct: 132 ALAACGCK 139
>pdb|1UOU|A Chain A, Crystal Structure Of Human Thymidine Phosphorylase In
Complex With A Small Molecule Inhibitor
Length = 474
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 49/68 (72%), Gaps = 4/68 (5%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEG---IVVDKHSTGGVGDKVSIPLVP 69
AMLMA+ + G+ EET LT+++ SG+ L W PE +VDKHSTGGVGDKVS+ L P
Sbjct: 67 AMLMAIRLRGMDLEETSVLTQALAQSGQQLEW-PEAWRQQLVDKHSTGGVGDKVSLVLAP 125
Query: 70 ALAACGLK 77
ALAACG K
Sbjct: 126 ALAACGCK 133
>pdb|1BRW|B Chain B, The Crystal Structure Of Pyrimidine Nucleoside
Phosphorylase In A Closed Conformation
pdb|1BRW|A Chain A, The Crystal Structure Of Pyrimidine Nucleoside
Phosphorylase In A Closed Conformation
Length = 433
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGP-EGIVVDKHSTGGVGDKVSIPLVPAL 71
A+ MA++ G+T EET ALT +MV SGE L G+ VDKHSTGGVGD ++ L P +
Sbjct: 40 ALAMAIYFRGMTEEETAALTMAMVQSGEMLDLSSIRGVKVDKHSTGGVGDTTTLVLGPLV 99
Query: 72 AACGL 76
A+ G+
Sbjct: 100 ASVGV 104
>pdb|1AZY|A Chain A, Structural And Theoretical Studies Suggest Domain Movement
Produces An Active Conformation Of Thymidine
Phosphorylase
pdb|1AZY|B Chain B, Structural And Theoretical Studies Suggest Domain Movement
Produces An Active Conformation Of Thymidine
Phosphorylase
pdb|1OTP|A Chain A, Structural And Theoretical Studies Suggest Domain Movement
Produces An Active Conformation Of Thymidine
Phosphorylase
pdb|1TPT|A Chain A, Three-Dimensional Structure Of Thymidine Phosphorylase
From Escherichia Coli At 2.8 Angstroms Resolution
pdb|2TPT|A Chain A, Structural And Theoretical Studies Suggest Domain Movement
Produces An Active Conformation Of Thymidine
Phosphorylase
Length = 440
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGP---EGIVVDKHSTGGVGDKVSIPLVP 69
A+ M +F + +T E ++LT +M DSG L W G +VDKHSTGGVGD S+ L P
Sbjct: 41 ALAMTIFFHDMTMPERVSLTMAMRDSGTVLDWKSLHLNGPIVDKHSTGGVGDVTSLMLGP 100
Query: 70 ALAACG 75
+AACG
Sbjct: 101 MVAACG 106
>pdb|2DSJ|A Chain A, Crystal Structure Of Project Id Tt0128 From Thermus
Thermophilus Hb8
pdb|2DSJ|B Chain B, Crystal Structure Of Project Id Tt0128 From Thermus
Thermophilus Hb8
Length = 423
Score = 60.8 bits (146), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/63 (53%), Positives = 42/63 (66%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGVGDKVSIPLVPALA 72
A LMA F+ GL EET+ LT++M SG+ L VDKHS+GGVGDKVS+ + P LA
Sbjct: 40 AWLMAAFLRGLDPEETLWLTETMARSGKVLDLSGLPHPVDKHSSGGVGDKVSLVVGPILA 99
Query: 73 ACG 75
A G
Sbjct: 100 ASG 102
>pdb|3H5Q|A Chain A, Crystal Structure Of A Putative Pyrimidine-Nucleoside
Phosphorylase From Staphylococcus Aureus
Length = 436
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGP-EGIVVDKHSTGGVGDKVSIPLVPAL 71
++ A++ ++E +ALT + V+SG+ + +G+ VDKHSTGGVGD ++ L P +
Sbjct: 43 SLAXAIYFQDXNDDERVALTXAXVNSGDXIDLSDIKGVKVDKHSTGGVGDTTTLVLAPLV 102
Query: 72 AA 73
AA
Sbjct: 103 AA 104
>pdb|4ALX|A Chain A, Crystal Structure Of Ls-Achbp Complexed With The Potent
Nachr Antagonist Dhbe
pdb|4ALX|B Chain B, Crystal Structure Of Ls-Achbp Complexed With The Potent
Nachr Antagonist Dhbe
pdb|4ALX|C Chain C, Crystal Structure Of Ls-Achbp Complexed With The Potent
Nachr Antagonist Dhbe
pdb|4ALX|D Chain D, Crystal Structure Of Ls-Achbp Complexed With The Potent
Nachr Antagonist Dhbe
pdb|4ALX|E Chain E, Crystal Structure Of Ls-Achbp Complexed With The Potent
Nachr Antagonist Dhbe
pdb|4ALX|F Chain F, Crystal Structure Of Ls-Achbp Complexed With The Potent
Nachr Antagonist Dhbe
pdb|4ALX|G Chain G, Crystal Structure Of Ls-Achbp Complexed With The Potent
Nachr Antagonist Dhbe
pdb|4ALX|H Chain H, Crystal Structure Of Ls-Achbp Complexed With The Potent
Nachr Antagonist Dhbe
pdb|4ALX|I Chain I, Crystal Structure Of Ls-Achbp Complexed With The Potent
Nachr Antagonist Dhbe
pdb|4ALX|J Chain J, Crystal Structure Of Ls-Achbp Complexed With The Potent
Nachr Antagonist Dhbe
Length = 229
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 14/58 (24%)
Query: 20 INGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGVGDKVSIPL----VPALAA 73
+N +TNE + + S TL+W HS D+VS+P+ VP LAA
Sbjct: 60 VNEITNEVDVVFWQQTTWSDRTLAWN------SSHS----PDQVSVPISSLWVPDLAA 107
>pdb|1I9B|A Chain A, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1I9B|B Chain B, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1I9B|C Chain C, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1I9B|D Chain D, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1I9B|E Chain E, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
Length = 217
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 14/58 (24%)
Query: 20 INGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGVGDKVSIPL----VPALAA 73
+N +TNE + + S TL+W HS D+VS+P+ VP LAA
Sbjct: 48 VNEITNEVDVVFWQQTTWSDRTLAWN------SSHS----PDQVSVPISSLWVPDLAA 95
>pdb|1UW6|A Chain A, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|B Chain B, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|C Chain C, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|D Chain D, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|E Chain E, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|F Chain F, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|G Chain G, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|H Chain H, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|I Chain I, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|J Chain J, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|K Chain K, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|L Chain L, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|M Chain M, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|N Chain N, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|O Chain O, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|P Chain P, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|Q Chain Q, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|R Chain R, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|S Chain S, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|T Chain T, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
Length = 211
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 14/58 (24%)
Query: 20 INGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGVGDKVSIPL----VPALAA 73
+N +TNE + + S TL+W HS D+VS+P+ VP LAA
Sbjct: 42 VNEITNEVDVVFWQQTTWSDRTLAWN------SSHS----PDQVSVPISSLWVPDLAA 89
>pdb|1UX2|A Chain A, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1UX2|B Chain B, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1UX2|C Chain C, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1UX2|D Chain D, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1UX2|E Chain E, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1UX2|F Chain F, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1UX2|G Chain G, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1UX2|H Chain H, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1UX2|I Chain I, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1UX2|J Chain J, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
Length = 212
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 14/58 (24%)
Query: 20 INGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGVGDKVSIPL----VPALAA 73
+N +TNE + + S TL+W HS D+VS+P+ VP LAA
Sbjct: 43 VNEITNEVDVVFWQQTTWSDRTLAWN------SSHS----PDQVSVPISSLWVPDLAA 90
>pdb|1UV6|A Chain A, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Carbamylcholine
pdb|1UV6|B Chain B, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Carbamylcholine
pdb|1UV6|C Chain C, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Carbamylcholine
pdb|1UV6|D Chain D, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Carbamylcholine
pdb|1UV6|E Chain E, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Carbamylcholine
pdb|1UV6|F Chain F, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Carbamylcholine
pdb|1UV6|G Chain G, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Carbamylcholine
pdb|1UV6|H Chain H, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Carbamylcholine
pdb|1UV6|I Chain I, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Carbamylcholine
pdb|1UV6|J Chain J, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Carbamylcholine
pdb|1YI5|A Chain A, Crystal Structure Of The A-Cobratoxin-Achbp Complex
pdb|1YI5|B Chain B, Crystal Structure Of The A-Cobratoxin-Achbp Complex
pdb|1YI5|C Chain C, Crystal Structure Of The A-Cobratoxin-Achbp Complex
pdb|1YI5|D Chain D, Crystal Structure Of The A-Cobratoxin-Achbp Complex
pdb|1YI5|E Chain E, Crystal Structure Of The A-Cobratoxin-Achbp Complex
pdb|3U8J|B Chain B, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3531
(1-(Pyridin-3-Yl)-1,4- Diazepane)
pdb|3U8J|A Chain A, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3531
(1-(Pyridin-3-Yl)-1,4- Diazepane)
pdb|3U8J|C Chain C, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3531
(1-(Pyridin-3-Yl)-1,4- Diazepane)
pdb|3U8J|D Chain D, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3531
(1-(Pyridin-3-Yl)-1,4- Diazepane)
pdb|3U8J|E Chain E, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3531
(1-(Pyridin-3-Yl)-1,4- Diazepane)
pdb|3U8J|F Chain F, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3531
(1-(Pyridin-3-Yl)-1,4- Diazepane)
pdb|3U8J|G Chain G, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3531
(1-(Pyridin-3-Yl)-1,4- Diazepane)
pdb|3U8J|J Chain J, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3531
(1-(Pyridin-3-Yl)-1,4- Diazepane)
pdb|3U8J|I Chain I, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3531
(1-(Pyridin-3-Yl)-1,4- Diazepane)
pdb|3U8J|H Chain H, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3531
(1-(Pyridin-3-Yl)-1,4- Diazepane)
pdb|3U8K|A Chain A, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|B Chain B, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|C Chain C, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|D Chain D, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|E Chain E, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|F Chain F, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|G Chain G, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|H Chain H, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|I Chain I, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|J Chain J, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|K Chain K, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|L Chain L, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|M Chain M, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|N Chain N, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|O Chain O, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|P Chain P, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|Q Chain Q, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|R Chain R, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|S Chain S, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|T Chain T, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8L|A Chain A, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3570
(1-(5-Phenylpyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8L|B Chain B, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3570
(1-(5-Phenylpyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8L|C Chain C, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3570
(1-(5-Phenylpyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8L|D Chain D, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3570
(1-(5-Phenylpyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8L|E Chain E, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3570
(1-(5-Phenylpyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8L|F Chain F, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3570
(1-(5-Phenylpyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8L|G Chain G, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3570
(1-(5-Phenylpyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8L|H Chain H, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3570
(1-(5-Phenylpyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8L|I Chain I, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3570
(1-(5-Phenylpyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8L|J Chain J, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3570
(1-(5-Phenylpyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|A Chain A, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|B Chain B, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|C Chain C, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|D Chain D, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|E Chain E, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|F Chain F, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|G Chain G, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|H Chain H, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|I Chain I, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|J Chain J, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|K Chain K, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|L Chain L, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|M Chain M, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|N Chain N, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|O Chain O, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|P Chain P, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|Q Chain Q, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|R Chain R, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|S Chain S, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|T Chain T, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8N|A Chain A, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|B Chain B, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|C Chain C, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|D Chain D, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|E Chain E, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|F Chain F, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|G Chain G, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|H Chain H, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|I Chain I, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|J Chain J, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|K Chain K, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|L Chain L, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|M Chain M, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|N Chain N, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|O Chain O, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|P Chain P, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|Q Chain Q, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|R Chain R, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|S Chain S, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|T Chain T, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3ZDG|A Chain A, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|B Chain B, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|C Chain C, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|D Chain D, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|E Chain E, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|F Chain F, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|G Chain G, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|H Chain H, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|I Chain I, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|J Chain J, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|K Chain K, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|L Chain L, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|M Chain M, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|N Chain N, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|O Chain O, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|P Chain P, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|Q Chain Q, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|R Chain R, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|S Chain S, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|T Chain T, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDH|A Chain A, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue N,n-dimethyl-4-(1-methyl-1h-
Imidazol-2-yloxy)butan-2-amine
pdb|3ZDH|B Chain B, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue N,n-dimethyl-4-(1-methyl-1h-
Imidazol-2-yloxy)butan-2-amine
pdb|3ZDH|C Chain C, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue N,n-dimethyl-4-(1-methyl-1h-
Imidazol-2-yloxy)butan-2-amine
pdb|3ZDH|D Chain D, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue N,n-dimethyl-4-(1-methyl-1h-
Imidazol-2-yloxy)butan-2-amine
pdb|3ZDH|E Chain E, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue N,n-dimethyl-4-(1-methyl-1h-
Imidazol-2-yloxy)butan-2-amine
pdb|3ZDH|F Chain F, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue N,n-dimethyl-4-(1-methyl-1h-
Imidazol-2-yloxy)butan-2-amine
pdb|3ZDH|G Chain G, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue N,n-dimethyl-4-(1-methyl-1h-
Imidazol-2-yloxy)butan-2-amine
pdb|3ZDH|H Chain H, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue N,n-dimethyl-4-(1-methyl-1h-
Imidazol-2-yloxy)butan-2-amine
pdb|3ZDH|I Chain I, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue N,n-dimethyl-4-(1-methyl-1h-
Imidazol-2-yloxy)butan-2-amine
pdb|3ZDH|J Chain J, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue N,n-dimethyl-4-(1-methyl-1h-
Imidazol-2-yloxy)butan-2-amine
Length = 210
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 14/58 (24%)
Query: 20 INGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGVGDKVSIPL----VPALAA 73
+N +TNE + + S TL+W HS D+VS+P+ VP LAA
Sbjct: 41 VNEITNEVDVVFWQQTTWSDRTLAWN------SSHS----PDQVSVPISSLWVPDLAA 88
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
Length = 492
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 7 TNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEGI-----VVD---KHSTGG 58
T+++P+A ++A F G+T + + + +GE L G +G V D + + GG
Sbjct: 252 TSHLPKARVVACFCEGMTVRGLLMAMRRLGLAGEFLLLGSDGWADRYDVTDGYQREAVGG 311
Query: 59 VGDKVSIPLV 68
+ K+ P V
Sbjct: 312 ITIKLQSPDV 321
>pdb|2ZJU|A Chain A, Crystal Structure Of Lymnaea Stagnalis Acetylcholine
Binding Protein (Ls-Achbp) Complexed With Imidacloprid
pdb|2ZJU|B Chain B, Crystal Structure Of Lymnaea Stagnalis Acetylcholine
Binding Protein (Ls-Achbp) Complexed With Imidacloprid
pdb|2ZJU|C Chain C, Crystal Structure Of Lymnaea Stagnalis Acetylcholine
Binding Protein (Ls-Achbp) Complexed With Imidacloprid
pdb|2ZJU|D Chain D, Crystal Structure Of Lymnaea Stagnalis Acetylcholine
Binding Protein (Ls-Achbp) Complexed With Imidacloprid
pdb|2ZJU|E Chain E, Crystal Structure Of Lymnaea Stagnalis Acetylcholine
Binding Protein (Ls-Achbp) Complexed With Imidacloprid
pdb|2ZJV|A Chain A, Crystal Structure Of Lymnaea Stagnalis Acetylcholine
Binding Protein (Ls-Achbp) Complexed With Clothianidin
pdb|2ZJV|B Chain B, Crystal Structure Of Lymnaea Stagnalis Acetylcholine
Binding Protein (Ls-Achbp) Complexed With Clothianidin
pdb|2ZJV|C Chain C, Crystal Structure Of Lymnaea Stagnalis Acetylcholine
Binding Protein (Ls-Achbp) Complexed With Clothianidin
pdb|2ZJV|D Chain D, Crystal Structure Of Lymnaea Stagnalis Acetylcholine
Binding Protein (Ls-Achbp) Complexed With Clothianidin
pdb|2ZJV|E Chain E, Crystal Structure Of Lymnaea Stagnalis Acetylcholine
Binding Protein (Ls-Achbp) Complexed With Clothianidin
Length = 214
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 14/58 (24%)
Query: 20 INGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGVGDKVSIPL----VPALAA 73
+N +TNE + + S TL+W HS D+VS+P+ VP LAA
Sbjct: 45 VNEITNEVDVVFWQQTTWSDRTLAWD------SSHS----PDQVSVPISSLWVPDLAA 92
>pdb|2VQ0|A Chain A, Capsid Structure Of Sesbania Mosaic Virus Coat Protein
Deletion Mutant Rcp(Delta 48 To 59)
pdb|2VQ0|B Chain B, Capsid Structure Of Sesbania Mosaic Virus Coat Protein
Deletion Mutant Rcp(Delta 48 To 59)
pdb|2VQ0|C Chain C, Capsid Structure Of Sesbania Mosaic Virus Coat Protein
Deletion Mutant Rcp(Delta 48 To 59)
Length = 256
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 19 FINGLTNEETIALTKSMVDSGET-LSWGPEGIVVDKHSTGGVGDKVSIPLVPA 70
FING +T + +D + W P D + GV ++ PLVPA
Sbjct: 166 FINGTRCSDTSTAISTTLDVSKLGKKWYPYKTSADYATAVGVDVNIATPLVPA 218
>pdb|1X33|A Chain A, T=3 Recombinant Capsid Of Semv Cp
pdb|1X33|B Chain B, T=3 Recombinant Capsid Of Semv Cp
pdb|1X33|C Chain C, T=3 Recombinant Capsid Of Semv Cp
Length = 268
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 19 FINGLTNEETIALTKSMVDSGET-LSWGPEGIVVDKHSTGGVGDKVSIPLVPA 70
FING +T + +D + W P D + GV ++ PLVPA
Sbjct: 178 FINGTRCSDTSTAISTTLDVSKLGKKWYPYKTSADYATAVGVDVNIATPLVPA 230
>pdb|1X35|A Chain A, Recombinant T3 Capsid Of A Site Specific Mutant Of Semv Cp
pdb|1X35|B Chain B, Recombinant T3 Capsid Of A Site Specific Mutant Of Semv Cp
pdb|1X35|C Chain C, Recombinant T3 Capsid Of A Site Specific Mutant Of Semv Cp
Length = 268
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 19 FINGLTNEETIALTKSMVDSGET-LSWGPEGIVVDKHSTGGVGDKVSIPLVPA 70
FING +T + +D + W P D + GV ++ PLVPA
Sbjct: 178 FINGTRCSDTSTAISTTLDVSKLGKKWYPYKTSADYATAVGVDVNIATPLVPA 230
>pdb|1X36|A Chain A, T1 Capsid Of An Amino-Terminal Deletion Mutant Of Semv Cp
Length = 237
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 19 FINGLTNEETIALTKSMVD-SGETLSWGPEGIVVDKHSTGGVGDKVSIPLVPA 70
FING +T + +D S W P D + GV ++ PLVPA
Sbjct: 147 FINGTRCSDTSTAISTTLDVSKLGKKWYPYKTSADYATAVGVDVNIATPLVPA 199
>pdb|1VB4|A Chain A, T1 Capsid Structure Of Sesbania Mosaic Virus Coat Protein
Deletion Mutant Cp-N(Delta)36
Length = 232
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 19 FINGLTNEET-IALTKSMVDSGETLSWGPEGIVVDKHSTGGVGDKVSIPLVPA 70
FING +T A++ ++ S W P D + GV ++ PLVPA
Sbjct: 142 FINGTRCSDTSTAISTTLDVSKLGKKWYPYKTSADYATAVGVDVNIATPLVPA 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,277,694
Number of Sequences: 62578
Number of extensions: 74878
Number of successful extensions: 202
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 188
Number of HSP's gapped (non-prelim): 25
length of query: 79
length of database: 14,973,337
effective HSP length: 48
effective length of query: 31
effective length of database: 11,969,593
effective search space: 371057383
effective search space used: 371057383
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)