BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1333
(79 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6UET3|TYPH_SINMW Thymidine phosphorylase OS=Sinorhizobium medicae (strain WSM419)
GN=deoA PE=3 SV=1
Length = 438
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEGI-VVDKHSTGGVGDKVSIPLVPAL 71
A MA++ +G++ +E +ALT +M DSGETL WG G VVDKHSTGGVGD VS+ L P +
Sbjct: 42 AFAMAVWFSGMSRDECVALTLAMRDSGETLDWGEFGRPVVDKHSTGGVGDNVSLMLAPIV 101
Query: 72 AACG 75
AACG
Sbjct: 102 AACG 105
>sp|Q99N42|TYPH_MOUSE Thymidine phosphorylase OS=Mus musculus GN=Tymp PE=2 SV=1
Length = 471
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 50/68 (73%), Gaps = 4/68 (5%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEG---IVVDKHSTGGVGDKVSIPLVP 69
AMLMA+ + G+ EET LT+++ +SG+ L W P+ +VDKHSTGGVGDKVS+ L P
Sbjct: 59 AMLMAIRLQGMNLEETSVLTRALAESGQQLEW-PKAWHQQLVDKHSTGGVGDKVSLVLAP 117
Query: 70 ALAACGLK 77
ALAACG K
Sbjct: 118 ALAACGCK 125
>sp|P19971|TYPH_HUMAN Thymidine phosphorylase OS=Homo sapiens GN=TYMP PE=1 SV=2
Length = 482
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 49/68 (72%), Gaps = 4/68 (5%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEG---IVVDKHSTGGVGDKVSIPLVP 69
AMLMA+ + G+ EET LT+++ SG+ L W PE +VDKHSTGGVGDKVS+ L P
Sbjct: 73 AMLMAIRLRGMDLEETSVLTQALAQSGQQLEW-PEAWRQQLVDKHSTGGVGDKVSLVLAP 131
Query: 70 ALAACGLK 77
ALAACG K
Sbjct: 132 ALAACGCK 139
>sp|Q483R6|TYPH_COLP3 Thymidine phosphorylase OS=Colwellia psychrerythraea (strain 34H /
ATCC BAA-681) GN=deoA PE=3 SV=1
Length = 438
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSW-GPEGIVVDKHSTGGVGDKVSIPLVPAL 71
AM MA+F G++ +E + TK+M+ SGE LSW G +G +VDKHSTGGVGDKVS L +
Sbjct: 46 AMAMAIFQQGMSIDERVNFTKAMMRSGEVLSWEGFDGPIVDKHSTGGVGDKVSFMLAAIV 105
Query: 72 AACG 75
AACG
Sbjct: 106 AACG 109
>sp|Q5FVR2|TYPH_RAT Thymidine phosphorylase OS=Rattus norvegicus GN=Tymp PE=2 SV=1
Length = 476
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 50/68 (73%), Gaps = 4/68 (5%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEG---IVVDKHSTGGVGDKVSIPLVP 69
AMLMA+ + G+ EET LT+++ +SG+ L W P+ +VDKHSTGGVGDKVS+ L P
Sbjct: 66 AMLMAIRLQGMDLEETSVLTQALAESGQQLEW-PKAWHQQLVDKHSTGGVGDKVSLVLAP 124
Query: 70 ALAACGLK 77
ALAACG K
Sbjct: 125 ALAACGCK 132
>sp|P47717|TYPH_MYCPI Thymidine phosphorylase OS=Mycoplasma pirum GN=deoA PE=3 SV=1
Length = 419
Score = 70.1 bits (170), Expect = 3e-12, Method: Composition-based stats.
Identities = 37/78 (47%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
Query: 1 MVTQSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSWGPE--GIVVDKHSTGG 58
+V +S + A+LMA++ NGL + E LTK+M+DSG+ + PE I++DKHSTGG
Sbjct: 28 LVNKSIPDYQISALLMAIWFNGLDDNELYFLTKAMIDSGKIYKFHPEYKKILIDKHSTGG 87
Query: 59 VGDKVSIPLVPALAACGL 76
+GDKVSI L P L + L
Sbjct: 88 IGDKVSIALRPILVSFDL 105
>sp|Q92T50|TYPH_RHIME Thymidine phosphorylase OS=Rhizobium meliloti (strain 1021) GN=deoA
PE=3 SV=1
Length = 440
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEGI-VVDKHSTGGVGDKVSIPLVPAL 71
A MA++ +G+ +E +ALT +M DSGETL W +VDKHSTGGVGD VS+ L P +
Sbjct: 42 AFAMAVWFSGMNRDECVALTLAMRDSGETLDWSDLARPIVDKHSTGGVGDNVSLMLAPIV 101
Query: 72 AACG 75
AACG
Sbjct: 102 AACG 105
>sp|A1S475|TYPH_SHEAM Thymidine phosphorylase OS=Shewanella amazonensis (strain ATCC
BAA-1098 / SB2B) GN=deoA PE=3 SV=1
Length = 443
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 46/66 (69%), Gaps = 3/66 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSW---GPEGIVVDKHSTGGVGDKVSIPLVP 69
A+ MA++ N +T +E IALT +M DSG L+W G G V+DKHSTGGVGD +S+ L P
Sbjct: 41 ALGMAVYFNDMTMDERIALTTAMRDSGTVLNWDSLGLNGPVIDKHSTGGVGDVISLMLGP 100
Query: 70 ALAACG 75
AACG
Sbjct: 101 MAAACG 106
>sp|C3MBH0|TYPH_RHISN Thymidine phosphorylase OS=Rhizobium sp. (strain NGR234) GN=deoA
PE=3 SV=1
Length = 438
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEGI-VVDKHSTGGVGDKVSIPLVPAL 71
A MA + +G+ +E +ALT +M DSG+ L W G +VDKHSTGGVGD VS+ L P +
Sbjct: 42 AFAMATWFSGMNRDECVALTLAMRDSGDILDWSEFGRPIVDKHSTGGVGDNVSLMLAPIV 101
Query: 72 AACG 75
AACG
Sbjct: 102 AACG 105
>sp|Q5QXT8|TYPH_IDILO Thymidine phosphorylase OS=Idiomarina loihiensis (strain ATCC
BAA-735 / DSM 15497 / L2-TR) GN=deoA PE=3 SV=1
Length = 446
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 46/66 (69%), Gaps = 3/66 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGPE---GIVVDKHSTGGVGDKVSIPLVP 69
A+ MA++ G++ +E ALT +M DSG+ L W + G V+DKHSTGGVGD VS+ L P
Sbjct: 41 ALAMAIYFRGMSAQEKTALTVAMRDSGDVLDWRQDNLNGPVLDKHSTGGVGDVVSLMLGP 100
Query: 70 ALAACG 75
+AACG
Sbjct: 101 IVAACG 106
>sp|B1KC83|TYPH_BURCC Thymidine phosphorylase OS=Burkholderia cenocepacia (strain MC0-3)
GN=deoA PE=3 SV=1
Length = 438
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 3/66 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSW---GPEGIVVDKHSTGGVGDKVSIPLVP 69
A MA++ N L+ +E +ALT + DSG+ L W G G V+DKHSTGGVGD VS+ L P
Sbjct: 41 AFAMAVYFNDLSTDERVALTLAQRDSGDVLDWRALGLGGPVIDKHSTGGVGDVVSLMLGP 100
Query: 70 ALAACG 75
+AACG
Sbjct: 101 MVAACG 106
>sp|B4EPB7|TYPH_BURCJ Thymidine phosphorylase OS=Burkholderia cepacia (strain J2315 / LMG
16656) GN=deoA PE=3 SV=1
Length = 438
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 45/66 (68%), Gaps = 3/66 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGP---EGIVVDKHSTGGVGDKVSIPLVP 69
A MA++ N L+ +E +ALT + DSG+ L W +G V+DKHSTGGVGD VS+ L P
Sbjct: 41 AFAMAVYFNDLSTDERVALTLAQRDSGDVLDWRALDLDGPVIDKHSTGGVGDVVSLMLGP 100
Query: 70 ALAACG 75
+AACG
Sbjct: 101 MVAACG 106
>sp|P47297|TYPH_MYCGE Thymidine phosphorylase OS=Mycoplasma genitalium (strain ATCC 33530
/ G-37 / NCTC 10195) GN=deoA PE=3 SV=1
Length = 421
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/65 (52%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEG-IVVDKHSTGGVGDKVSIPLVPAL 71
A LMA++ G+ E LTK+MVD+GE + + G I VDKHSTGG+GDKVS+ LVP L
Sbjct: 40 AFLMAIWFKGMNPNELFLLTKAMVDTGEIIKFNHHGKISVDKHSTGGIGDKVSLALVPIL 99
Query: 72 AACGL 76
+ G
Sbjct: 100 TSLGF 104
>sp|A9KZ79|TYPH_SHEB9 Thymidine phosphorylase OS=Shewanella baltica (strain OS195)
GN=deoA PE=3 SV=1
Length = 443
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 3/66 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSW---GPEGIVVDKHSTGGVGDKVSIPLVP 69
A+ MA++ N + +E IALT +M DSG L+W G G V+DKHSTGGVGD +S+ L P
Sbjct: 41 ALGMAVYFNDMNMDERIALTTAMRDSGTVLNWQSLGLNGPVIDKHSTGGVGDVISLMLGP 100
Query: 70 ALAACG 75
AACG
Sbjct: 101 MAAACG 106
>sp|A0KU08|TYPH_SHESA Thymidine phosphorylase OS=Shewanella sp. (strain ANA-3) GN=deoA
PE=3 SV=1
Length = 443
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 3/66 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSW---GPEGIVVDKHSTGGVGDKVSIPLVP 69
A+ MA++ N + +E IALT +M DSG L+W G G V+DKHSTGGVGD +S+ L P
Sbjct: 41 ALGMAVYFNDMNMDERIALTTAMRDSGTVLNWQSLGLNGPVIDKHSTGGVGDVISLMLGP 100
Query: 70 ALAACG 75
AACG
Sbjct: 101 MAAACG 106
>sp|Q0HLE9|TYPH_SHESM Thymidine phosphorylase OS=Shewanella sp. (strain MR-4) GN=deoA
PE=3 SV=1
Length = 443
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 3/66 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSW---GPEGIVVDKHSTGGVGDKVSIPLVP 69
A+ MA++ N + +E IALT +M DSG L+W G G V+DKHSTGGVGD +S+ L P
Sbjct: 41 ALGMAVYFNDMNMDERIALTTAMRDSGTVLNWQSLGLNGPVIDKHSTGGVGDVISLMLGP 100
Query: 70 ALAACG 75
AACG
Sbjct: 101 MAAACG 106
>sp|Q2NW05|TYPH_SODGM Thymidine phosphorylase OS=Sodalis glossinidius (strain morsitans)
GN=deoA PE=3 SV=1
Length = 443
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEGI---VVDKHSTGGVGDKVSIPLVP 69
A+ M +F + + +E +ALT +M DSG TL W E + VVDKHSTGGVGD S+ L P
Sbjct: 41 ALAMTIFFHDMDLQERVALTLAMRDSGHTLDWRREALGGPVVDKHSTGGVGDVTSLMLGP 100
Query: 70 ALAACG 75
+AACG
Sbjct: 101 MIAACG 106
>sp|A6WRB7|TYPH_SHEB8 Thymidine phosphorylase OS=Shewanella baltica (strain OS185)
GN=deoA PE=3 SV=1
Length = 443
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 3/66 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSW---GPEGIVVDKHSTGGVGDKVSIPLVP 69
A+ MA++ N + +E IALT +M DSG L+W G G V+DKHSTGGVGD +S+ L P
Sbjct: 41 ALGMAVYFNDMNMDERIALTTAMRDSGTVLNWQSLGLNGPVIDKHSTGGVGDVISLMLGP 100
Query: 70 ALAACG 75
AACG
Sbjct: 101 MAAACG 106
>sp|Q0HXQ3|TYPH_SHESR Thymidine phosphorylase OS=Shewanella sp. (strain MR-7) GN=deoA
PE=3 SV=1
Length = 443
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 3/66 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSW---GPEGIVVDKHSTGGVGDKVSIPLVP 69
A+ MA++ N + +E IALT +M DSG L+W G G V+DKHSTGGVGD +S+ L P
Sbjct: 41 ALGMAVYFNDMNMDERIALTTAMRDSGTVLNWQSLGLNGPVIDKHSTGGVGDVISLMLGP 100
Query: 70 ALAACG 75
AACG
Sbjct: 101 MAAACG 106
>sp|B8E6P5|TYPH_SHEB2 Thymidine phosphorylase OS=Shewanella baltica (strain OS223)
GN=deoA PE=3 SV=1
Length = 443
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 3/66 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSW---GPEGIVVDKHSTGGVGDKVSIPLVP 69
A+ MA++ N + +E IALT +M DSG L+W G G V+DKHSTGGVGD +S+ L P
Sbjct: 41 ALGMAVYFNDMNMDERIALTTAMRDSGTVLNWQSLGLNGPVIDKHSTGGVGDVISLMLGP 100
Query: 70 ALAACG 75
AACG
Sbjct: 101 MAAACG 106
>sp|A1RH88|TYPH_SHESW Thymidine phosphorylase OS=Shewanella sp. (strain W3-18-1) GN=deoA
PE=3 SV=1
Length = 443
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSW---GPEGIVVDKHSTGGVGDKVSIPLVP 69
A MA++ N + +E IALT +M DSG L+W G G V+DKHSTGGVGD +S+ L P
Sbjct: 41 AFGMAVYFNDMNMDERIALTTAMRDSGTVLNWQSLGLNGPVIDKHSTGGVGDVISLMLGP 100
Query: 70 ALAACG 75
AACG
Sbjct: 101 MAAACG 106
>sp|A4Y9A7|TYPH_SHEPC Thymidine phosphorylase OS=Shewanella putrefaciens (strain CN-32 /
ATCC BAA-453) GN=deoA PE=3 SV=1
Length = 443
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSW---GPEGIVVDKHSTGGVGDKVSIPLVP 69
A MA++ N + +E IALT +M DSG L+W G G V+DKHSTGGVGD +S+ L P
Sbjct: 41 AFGMAVYFNDMNMDERIALTTAMRDSGTVLNWQSLGLNGPVIDKHSTGGVGDVISLMLGP 100
Query: 70 ALAACG 75
AACG
Sbjct: 101 MAAACG 106
>sp|A8FYQ8|TYPH_SHESH Thymidine phosphorylase OS=Shewanella sediminis (strain HAW-EB3)
GN=deoA PE=3 SV=1
Length = 443
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 45/66 (68%), Gaps = 3/66 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGP---EGIVVDKHSTGGVGDKVSIPLVP 69
A+ MA++ N + +E IALT SM DSG L+W +G ++DKHSTGGVGD +S+ L P
Sbjct: 41 ALGMAVYFNDMNMDERIALTTSMRDSGTVLNWKSLDLDGPIIDKHSTGGVGDVISLMLGP 100
Query: 70 ALAACG 75
AACG
Sbjct: 101 MAAACG 106
>sp|P75052|TYPH_MYCPN Thymidine phosphorylase OS=Mycoplasma pneumoniae (strain ATCC 29342
/ M129) GN=deoA PE=1 SV=1
Length = 421
Score = 65.5 bits (158), Expect = 9e-11, Method: Composition-based stats.
Identities = 33/62 (53%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEG-IVVDKHSTGGVGDKVSIPLVPAL 71
A LMA++ G+ ++E LTK+MV SGE+L + + VDKHSTGG+GDKVSI L+P L
Sbjct: 40 AFLMAVWFQGMNSKELFCLTKAMVKSGESLHFNHHSKLSVDKHSTGGIGDKVSIALIPIL 99
Query: 72 AA 73
A
Sbjct: 100 TA 101
>sp|B8CKI5|TYPH_SHEPW Thymidine phosphorylase OS=Shewanella piezotolerans (strain WP3 /
JCM 13877) GN=deoA PE=3 SV=1
Length = 443
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGP---EGIVVDKHSTGGVGDKVSIPLVP 69
A+ MA++ N + +E IALT SM DSG L W G ++DKHSTGGVGD +S+ L P
Sbjct: 41 ALGMAVYFNDMNMDERIALTTSMRDSGTVLDWKSLDLNGPIIDKHSTGGVGDVISLMLGP 100
Query: 70 ALAACG 75
AACG
Sbjct: 101 MAAACG 106
>sp|Q12QG2|TYPH_SHEDO Thymidine phosphorylase OS=Shewanella denitrificans (strain OS217 /
ATCC BAA-1090 / DSM 15013) GN=deoA PE=3 SV=1
Length = 443
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 47/76 (61%), Gaps = 7/76 (9%)
Query: 7 TNNVPRAML----MAMFINGLTNEETIALTKSMVDSGETLSW---GPEGIVVDKHSTGGV 59
TN+V + MA++ N + +E IALT M DSG L+W G G V+DKHSTGGV
Sbjct: 31 TNSVSEGQIAAFGMAVYFNDMNMDERIALTIGMRDSGTVLNWDSLGLNGPVIDKHSTGGV 90
Query: 60 GDKVSIPLVPALAACG 75
GD +S+ L P AACG
Sbjct: 91 GDVISLMLGPMAAACG 106
>sp|B1KRP7|TYPH_SHEWM Thymidine phosphorylase OS=Shewanella woodyi (strain ATCC 51908 /
MS32) GN=deoA PE=3 SV=1
Length = 443
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGP---EGIVVDKHSTGGVGDKVSIPLVP 69
A+ MA++ N + +E IALT SM DSG L W G ++DKHSTGGVGD +S+ L P
Sbjct: 41 ALGMAVYFNDMNMDERIALTTSMRDSGTVLDWQSLDLNGPIIDKHSTGGVGDVISLMLGP 100
Query: 70 ALAACG 75
AACG
Sbjct: 101 MAAACG 106
>sp|Q6LUH3|TYPH_PHOPR Thymidine phosphorylase OS=Photobacterium profundum GN=deoA PE=3
SV=2
Length = 443
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGP---EGIVVDKHSTGGVGDKVSIPLVP 69
A MA++ N +T +E +ALT +M DSG + W +G +VDKHSTGGVGD S+ L P
Sbjct: 41 AFAMAIYFNDMTMDERVALTCAMRDSGMVIDWSHMNFDGPIVDKHSTGGVGDVTSLMLGP 100
Query: 70 ALAACG 75
+AACG
Sbjct: 101 MVAACG 106
>sp|A3QGT2|TYPH_SHELP Thymidine phosphorylase OS=Shewanella loihica (strain ATCC BAA-1088
/ PV-4) GN=deoA PE=3 SV=1
Length = 443
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%), Gaps = 3/66 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSW---GPEGIVVDKHSTGGVGDKVSIPLVP 69
A+ MA++ + +E IALT +M DSG L+W G +G ++DKHSTGGVGD +S+ L P
Sbjct: 41 ALGMAVYFKDMNMDERIALTTAMRDSGTVLNWKNLGLDGPIIDKHSTGGVGDVISLMLGP 100
Query: 70 ALAACG 75
AACG
Sbjct: 101 MAAACG 106
>sp|Q8EHK3|TYPH_SHEON Thymidine phosphorylase OS=Shewanella oneidensis (strain MR-1)
GN=deoA PE=3 SV=1
Length = 443
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGP---EGIVVDKHSTGGVGDKVSIPLVP 69
A+ MA++ N + +E IALT +M DSG L+W G V+DKHSTGGVGD +S+ L P
Sbjct: 41 ALGMAVYFNDMNMDERIALTTAMRDSGTVLNWQSLNLNGPVIDKHSTGGVGDVISLMLGP 100
Query: 70 ALAACG 75
AACG
Sbjct: 101 MAAACG 106
>sp|A3D7J3|TYPH_SHEB5 Thymidine phosphorylase OS=Shewanella baltica (strain OS155 / ATCC
BAA-1091) GN=deoA PE=3 SV=1
Length = 443
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGP---EGIVVDKHSTGGVGDKVSIPLVP 69
A+ MA++ N + +E IALT +M DSG L+W G V+DKHSTGGVGD +S+ L P
Sbjct: 41 ALGMAVYFNDMNMDERIALTTAMRDSGTVLNWQSLELNGPVIDKHSTGGVGDVISLMLGP 100
Query: 70 ALAACG 75
AACG
Sbjct: 101 MAAACG 106
>sp|Q7NRT0|TYPH_CHRVO Thymidine phosphorylase OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 /
NCTC 9757) GN=deoA PE=3 SV=1
Length = 441
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGP---EGIVVDKHSTGGVGDKVSIPLVP 69
A+ MA++ NG+ EE + L +M DSG + W G +VDKHSTGGVGD VS+ L P
Sbjct: 41 ALAMAIYFNGMELEENVHLALAMRDSGRRMHWKDLNLPGPIVDKHSTGGVGDVVSLMLGP 100
Query: 70 ALAACG 75
+AACG
Sbjct: 101 MVAACG 106
>sp|Q98GV5|TYPH_RHILO Thymidine phosphorylase OS=Rhizobium loti (strain MAFF303099)
GN=deoA PE=3 SV=1
Length = 439
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 21 NGLTNEETIALTKSMVDSGETLSWGP-EGIVVDKHSTGGVGDKVSIPLVPALAACG 75
NG+ +E +ALT +M DSG+ L W G V DKHSTGGVGD VS+ L P +AACG
Sbjct: 48 NGMNRDEAVALTLAMRDSGDVLDWSDLPGPVTDKHSTGGVGDNVSLMLAPIVAACG 103
>sp|Q8UJ08|TYPH_AGRT5 Thymidine phosphorylase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=deoA PE=3 SV=1
Length = 438
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 21 NGLTNEETIALTKSMVDSGETLSWGPEGI-VVDKHSTGGVGDKVSIPLVPALAACGL 76
G+ +E +ALT +M DSG+ LSW G V DKHSTGGVGD VS+ L P +AACGL
Sbjct: 50 RGMNRDEMVALTLAMRDSGDVLSWRDIGRPVADKHSTGGVGDNVSLMLAPIVAACGL 106
>sp|A8H727|TYPH_SHEPA Thymidine phosphorylase OS=Shewanella pealeana (strain ATCC 700345
/ ANG-SQ1) GN=deoA PE=3 SV=1
Length = 443
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGP---EGIVVDKHSTGGVGDKVSIPLVP 69
A+ MA++ N + +E IALT +M DSG L+W G ++DKHSTGGVGD +S+ L P
Sbjct: 41 ALGMAVYFNDMNMDERIALTTAMRDSGTVLNWQSLDLNGPIIDKHSTGGVGDVISLMLGP 100
Query: 70 ALAACG 75
AACG
Sbjct: 101 MAAACG 106
>sp|A0KPE3|TYPH_AERHH Thymidine phosphorylase OS=Aeromonas hydrophila subsp. hydrophila
(strain ATCC 7966 / NCIB 9240) GN=deoA PE=3 SV=1
Length = 443
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 46/69 (66%), Gaps = 9/69 (13%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSW------GPEGIVVDKHSTGGVGDKVSIP 66
A+ MA++ +T +E +ALT +M DSG L+W GP +VDKHSTGGVGD VS+
Sbjct: 41 ALAMAVYFKDMTMDERVALTCAMRDSGMVLTWDHLNLGGP---IVDKHSTGGVGDVVSLM 97
Query: 67 LVPALAACG 75
L P +AACG
Sbjct: 98 LGPMVAACG 106
>sp|A4SRU3|TYPH_AERS4 Thymidine phosphorylase OS=Aeromonas salmonicida (strain A449)
GN=deoA PE=3 SV=1
Length = 443
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 46/69 (66%), Gaps = 9/69 (13%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSW------GPEGIVVDKHSTGGVGDKVSIP 66
A+ MA++ +T +E +ALT +M DSG L+W GP +VDKHSTGGVGD VS+
Sbjct: 41 ALAMAVYFKDMTMDERVALTCAMRDSGMVLNWEHLNLGGP---IVDKHSTGGVGDVVSLM 97
Query: 67 LVPALAACG 75
L P +AACG
Sbjct: 98 LGPMVAACG 106
>sp|B0TQ90|TYPH_SHEHH Thymidine phosphorylase OS=Shewanella halifaxensis (strain HAW-EB4)
GN=deoA PE=3 SV=1
Length = 443
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGP---EGIVVDKHSTGGVGDKVSIPLVP 69
A MA++ N + +E IALT +M DSG L W G ++DKHSTGGVGD +S+ L P
Sbjct: 41 AFGMAVYFNDMNMDERIALTTAMRDSGTVLDWKSLDLNGPIIDKHSTGGVGDVISLMLGP 100
Query: 70 ALAACG 75
AACG
Sbjct: 101 MAAACG 106
>sp|B6ENG4|TYPH_ALISL Thymidine phosphorylase OS=Aliivibrio salmonicida (strain LFI1238)
GN=deoA PE=3 SV=1
Length = 443
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGP---EGIVVDKHSTGGVGDKVSIPLVP 69
A MA++ N +T E IALT +M DSG + W +G +VDKHSTGGVGD S+ L P
Sbjct: 41 AFAMAVYFNEMTMPERIALTCAMRDSGMVIDWSHMNFDGPIVDKHSTGGVGDVTSLMLGP 100
Query: 70 ALAACG 75
+AACG
Sbjct: 101 MVAACG 106
>sp|Q5E7J6|TYPH_VIBF1 Thymidine phosphorylase OS=Vibrio fischeri (strain ATCC 700601 /
ES114) GN=deoA PE=3 SV=1
Length = 443
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGP---EGIVVDKHSTGGVGDKVSIPLVP 69
A MA++ N +T E IALT +M DSG + W +G +VDKHSTGGVGD S+ L P
Sbjct: 41 AFAMAVYFNEMTMPERIALTCAMRDSGMVIDWSHMNFDGPIVDKHSTGGVGDVTSLMLGP 100
Query: 70 ALAACG 75
+AACG
Sbjct: 101 MVAACG 106
>sp|B5FA99|TYPH_VIBFM Thymidine phosphorylase OS=Vibrio fischeri (strain MJ11) GN=deoA
PE=3 SV=1
Length = 443
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGP---EGIVVDKHSTGGVGDKVSIPLVP 69
A MA++ N +T E IALT +M DSG + W +G +VDKHSTGGVGD S+ L P
Sbjct: 41 AFAMAVYFNEMTMPERIALTCAMRDSGMVIDWSHMNFDGPIVDKHSTGGVGDVTSLMLGP 100
Query: 70 ALAACG 75
+AACG
Sbjct: 101 MVAACG 106
>sp|Q39PA6|TYPH_BURS3 Thymidine phosphorylase OS=Burkholderia sp. (strain 383) GN=deoA
PE=3 SV=1
Length = 438
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 45/66 (68%), Gaps = 3/66 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGP---EGIVVDKHSTGGVGDKVSIPLVP 69
A MA++ N L+ +E +ALT + DSG+ L W +G V+DKHSTGGVGD VS+ L P
Sbjct: 41 AFAMAVYFNDLSTDERVALTLAQRDSGDVLDWHALELDGPVIDKHSTGGVGDVVSLMLGP 100
Query: 70 ALAACG 75
+AACG
Sbjct: 101 MVAACG 106
>sp|P77836|PDP_GEOSE Pyrimidine-nucleoside phosphorylase OS=Geobacillus
stearothermophilus GN=pdp PE=1 SV=1
Length = 433
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGP-EGIVVDKHSTGGVGDKVSIPLVPAL 71
A+ MA+F G+ EET LT +MV SG+T+ EGI VDKHSTGGVGD ++ L P +
Sbjct: 40 ALAMAIFFRGMNEEETAELTMAMVHSGDTIDLSRIEGIKVDKHSTGGVGDTTTLVLGPLV 99
Query: 72 AACGL 76
A+ G+
Sbjct: 100 ASVGV 104
>sp|Q9KPL8|TYPH_VIBCH Thymidine phosphorylase OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=deoA PE=3 SV=2
Length = 448
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGP---EGIVVDKHSTGGVGDKVSIPLVP 69
A MA+F +T E IALT +M DSG + W +G +VDKHSTGGVGD S+ L P
Sbjct: 47 AFAMAIFFREMTMPERIALTCAMRDSGMVIDWSHMNFDGPIVDKHSTGGVGDVTSLMLGP 106
Query: 70 ALAACG 75
+AACG
Sbjct: 107 MVAACG 112
>sp|Q086F9|TYPH_SHEFN Thymidine phosphorylase OS=Shewanella frigidimarina (strain NCIMB
400) GN=deoA PE=3 SV=1
Length = 443
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSW---GPEGIVVDKHSTGGVGDKVSIPLVP 69
A MA++ + +E IALT +M DSG L+W G G ++DKHSTGGVGD +S+ L P
Sbjct: 41 AFGMAVYFKDMNMDERIALTIAMRDSGTVLNWDSLGLNGPIIDKHSTGGVGDVISLMLGP 100
Query: 70 ALAACG 75
AACG
Sbjct: 101 MAAACG 106
>sp|Q87M23|TYPH_VIBPA Thymidine phosphorylase OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=deoA PE=3 SV=1
Length = 442
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 43/69 (62%), Gaps = 9/69 (13%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSW------GPEGIVVDKHSTGGVGDKVSIP 66
A M +F N +T +E IALT +M DSG + W GP +VDKHSTGGVGD S+
Sbjct: 41 AFAMTIFFNEMTMDERIALTCAMRDSGMVIDWSHMNFGGP---IVDKHSTGGVGDVTSLM 97
Query: 67 LVPALAACG 75
L P +AACG
Sbjct: 98 LGPMVAACG 106
>sp|Q5HM85|PDP_STAEQ Pyrimidine-nucleoside phosphorylase OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=pdp PE=3 SV=1
Length = 433
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGP-EGIVVDKHSTGGVGDKVSIPLVPAL 71
++ MA+F + +EE ALT SMV+SGE + GI VDKHSTGGVGD ++ L P +
Sbjct: 40 SLAMAIFFQDMNDEERAALTMSMVNSGEKIDLSDINGIKVDKHSTGGVGDTTTLVLAPLV 99
Query: 72 AACGL 76
AA G+
Sbjct: 100 AAVGV 104
>sp|Q8CNH8|PDP_STAES Pyrimidine-nucleoside phosphorylase OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=pdp PE=3 SV=1
Length = 433
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGP-EGIVVDKHSTGGVGDKVSIPLVPAL 71
++ MA+F + +EE ALT SMV+SGE + GI VDKHSTGGVGD ++ L P +
Sbjct: 40 SLAMAIFFQDMNDEERAALTMSMVNSGEKIDLSDINGIKVDKHSTGGVGDTTTLVLAPLV 99
Query: 72 AACGL 76
AA G+
Sbjct: 100 AAVGV 104
>sp|A0KCQ9|TYPH_BURCH Thymidine phosphorylase OS=Burkholderia cenocepacia (strain HI2424)
GN=deoA PE=3 SV=1
Length = 438
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGP---EGIVVDKHSTGGVGDKVSIPLVP 69
A MA++ N L+ +E +ALT + DSG+ L W G V+DKHSTGGVGD VS+ L P
Sbjct: 41 AFAMAVYFNDLSTDERVALTLAQRDSGDVLDWRALDLGGPVIDKHSTGGVGDVVSLMLGP 100
Query: 70 ALAACG 75
+AACG
Sbjct: 101 MVAACG 106
>sp|Q1BV59|TYPH_BURCA Thymidine phosphorylase OS=Burkholderia cenocepacia (strain AU
1054) GN=deoA PE=3 SV=1
Length = 438
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGP---EGIVVDKHSTGGVGDKVSIPLVP 69
A MA++ N L+ +E +ALT + DSG+ L W G V+DKHSTGGVGD VS+ L P
Sbjct: 41 AFAMAVYFNDLSTDERVALTLAQRDSGDVLDWRALDLGGPVIDKHSTGGVGDVVSLMLGP 100
Query: 70 ALAACG 75
+AACG
Sbjct: 101 MVAACG 106
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,905,274
Number of Sequences: 539616
Number of extensions: 981700
Number of successful extensions: 2302
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1958
Number of HSP's gapped (non-prelim): 198
length of query: 79
length of database: 191,569,459
effective HSP length: 50
effective length of query: 29
effective length of database: 164,588,659
effective search space: 4773071111
effective search space used: 4773071111
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)