Query psy1333
Match_columns 79
No_of_seqs 144 out of 1073
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 16:43:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1333.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1333hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02644 Y_phosphoryl pyrimid 100.0 1.5E-29 3.3E-34 194.5 8.3 79 1-79 26-105 (405)
2 TIGR02643 T_phosphoryl thymidi 100.0 1E-28 2.2E-33 191.5 8.2 79 1-79 28-109 (437)
3 PRK05820 deoA thymidine phosph 100.0 1E-28 2.2E-33 191.6 7.9 79 1-79 29-110 (440)
4 COG0547 TrpD Anthranilate phos 99.9 7.6E-28 1.7E-32 181.8 7.8 78 1-79 29-109 (338)
5 PRK06078 pyrimidine-nucleoside 99.9 1.4E-27 3.1E-32 185.0 8.4 79 1-79 28-107 (434)
6 PRK04350 thymidine phosphoryla 99.9 7.5E-27 1.6E-31 183.1 8.2 78 1-79 106-184 (490)
7 PRK07394 hypothetical protein; 99.9 1.3E-26 2.8E-31 174.5 7.6 79 1-79 34-116 (342)
8 TIGR01245 trpD anthranilate ph 99.9 2.7E-26 5.9E-31 171.4 7.5 79 1-79 22-103 (330)
9 TIGR03327 AMP_phos AMP phospho 99.9 5.8E-26 1.3E-30 178.4 8.5 78 1-79 112-190 (500)
10 PRK08136 glycosyl transferase 99.9 5.3E-26 1.1E-30 170.2 7.5 79 1-79 32-113 (317)
11 PRK09522 bifunctional glutamin 99.9 5.5E-26 1.2E-30 178.9 7.5 78 1-79 225-305 (531)
12 TIGR02645 ARCH_P_rylase putati 99.9 1.1E-25 2.4E-30 176.6 8.5 78 1-79 111-189 (493)
13 PLN02641 anthranilate phosphor 99.9 1.3E-25 2.7E-30 169.5 7.3 76 1-79 29-107 (343)
14 PRK14607 bifunctional glutamin 99.9 1.7E-25 3.6E-30 175.6 8.1 78 1-79 220-300 (534)
15 PRK00188 trpD anthranilate pho 99.9 4.2E-25 9.1E-30 165.4 7.0 77 1-79 28-107 (339)
16 COG0213 DeoA Thymidine phospho 99.9 1.5E-24 3.4E-29 167.6 7.5 79 1-79 29-108 (435)
17 PRK09071 hypothetical protein; 99.9 9E-24 2E-28 158.3 7.1 76 1-79 33-110 (323)
18 PF02885 Glycos_trans_3N: Glyc 99.6 1.5E-15 3.2E-20 90.7 3.7 40 1-40 27-66 (66)
19 PF00591 Glycos_transf_3: Glyc 99.2 2.2E-12 4.8E-17 92.7 1.3 31 49-79 2-35 (252)
20 KOG1438|consensus 99.0 8.3E-10 1.8E-14 83.6 6.3 70 10-79 52-136 (373)
21 PF02885 Glycos_trans_3N: Glyc 82.0 3.3 7.1E-05 24.1 3.8 39 4-42 13-51 (66)
22 PHA00438 hypothetical protein 68.9 6.7 0.00015 24.7 2.8 32 6-37 49-80 (81)
23 PF13822 ACC_epsilon: Acyl-CoA 64.9 7.8 0.00017 22.7 2.5 19 2-20 7-25 (62)
24 PF04695 Pex14_N: Peroxisomal 64.2 12 0.00026 24.8 3.6 31 5-41 20-50 (136)
25 PF12646 DUF3783: Domain of un 60.1 12 0.00026 21.4 2.6 24 20-43 6-29 (58)
26 PRK15442 beta-lactamase TEM; P 57.3 51 0.0011 24.4 6.2 59 4-62 175-240 (284)
27 PF04282 DUF438: Family of unk 56.3 39 0.00085 20.5 4.5 21 21-41 27-47 (71)
28 PF02787 CPSase_L_D3: Carbamoy 54.1 18 0.00038 23.8 3.0 27 6-33 8-34 (123)
29 PHA02519 plasmid partition pro 54.0 21 0.00047 27.5 3.9 56 22-78 81-138 (387)
30 TIGR00778 ahpD_dom alkylhydrop 51.0 37 0.0008 17.9 4.0 27 7-33 21-47 (50)
31 PF15056 NRN1: Neuritin protei 49.9 10 0.00022 24.3 1.3 33 23-57 52-84 (89)
32 PF01466 Skp1: Skp1 family, di 48.8 32 0.0007 20.4 3.4 22 10-31 33-54 (78)
33 TIGR03879 near_KaiC_dom probab 48.0 39 0.00085 20.6 3.6 28 4-31 14-41 (73)
34 PF13720 Acetyltransf_11: Udp 48.0 33 0.00071 20.9 3.3 23 15-37 20-42 (83)
35 cd07313 terB_like_2 tellurium 46.7 64 0.0014 19.4 4.9 37 2-38 12-49 (104)
36 PRK13236 nitrogenase reductase 46.5 13 0.00029 27.2 1.6 29 50-78 8-37 (296)
37 cd02117 NifH_like This family 43.7 15 0.00033 25.1 1.5 27 52-78 4-31 (212)
38 TIGR03882 cyclo_dehyd_2 bacter 43.2 1.1E+02 0.0024 21.2 6.3 70 2-78 39-132 (193)
39 PRK13232 nifH nitrogenase redu 42.7 16 0.00035 26.0 1.5 26 53-78 6-32 (273)
40 PRK14487 cbb3-type cytochrome 41.6 1.4E+02 0.003 21.9 6.5 57 3-71 143-201 (217)
41 PRK13705 plasmid-partitioning 40.2 46 0.00099 25.6 3.7 56 22-78 81-138 (388)
42 PF13833 EF-hand_8: EF-hand do 39.6 37 0.0008 18.0 2.4 33 3-35 2-34 (54)
43 cd02037 MRP-like MRP (Multiple 39.4 19 0.00041 23.6 1.4 26 53-78 5-31 (169)
44 PF08069 Ribosomal_S13_N: Ribo 38.0 25 0.00053 20.9 1.6 25 5-29 27-51 (60)
45 PF02374 ArsA_ATPase: Anion-tr 37.8 14 0.00031 27.5 0.6 26 53-78 6-32 (305)
46 PF06384 ICAT: Beta-catenin-in 37.7 79 0.0017 19.7 3.9 28 9-36 17-46 (78)
47 PRK03975 tfx putative transcri 37.6 62 0.0014 21.9 3.7 28 2-31 3-30 (141)
48 TIGR01913 bet_lambda phage rec 36.6 41 0.00089 23.8 2.8 23 3-25 28-50 (188)
49 KOG1720|consensus 36.4 45 0.00097 24.6 3.0 28 10-39 164-191 (225)
50 PRK06078 pyrimidine-nucleoside 36.0 83 0.0018 25.2 4.7 40 4-43 14-53 (434)
51 PF11829 DUF3349: Protein of u 36.0 66 0.0014 20.6 3.4 34 7-41 21-54 (96)
52 PRK13230 nitrogenase reductase 35.9 22 0.00047 25.4 1.3 28 51-78 4-32 (279)
53 TIGR02644 Y_phosphoryl pyrimid 35.8 84 0.0018 24.9 4.7 40 4-43 12-51 (405)
54 PF02384 N6_Mtase: N-6 DNA Met 35.6 25 0.00055 25.4 1.6 29 24-58 30-59 (311)
55 PF13627 LPAM_2: Prokaryotic l 35.2 32 0.00069 16.8 1.5 13 65-77 6-18 (24)
56 PF04255 DUF433: Protein of un 35.0 51 0.0011 18.5 2.6 14 17-30 26-39 (56)
57 PRK09071 hypothetical protein; 34.8 99 0.0022 23.4 4.8 36 6-41 21-56 (323)
58 TIGR01245 trpD anthranilate ph 34.2 1.3E+02 0.0027 22.7 5.2 17 7-23 45-61 (330)
59 PRK07394 hypothetical protein; 33.7 81 0.0018 24.1 4.2 28 51-78 115-142 (342)
60 PRK14607 bifunctional glutamin 32.6 95 0.002 25.0 4.5 35 6-40 208-242 (534)
61 PRK13235 nifH nitrogenase redu 32.5 20 0.00043 25.5 0.7 26 53-78 6-32 (274)
62 PRK04350 thymidine phosphoryla 31.9 1E+02 0.0023 25.1 4.7 40 4-43 92-131 (490)
63 KOG2629|consensus 31.7 84 0.0018 24.2 3.9 31 5-41 19-49 (300)
64 TIGR01994 SUF_scaf_2 SUF syste 31.5 1.3E+02 0.0028 19.7 4.5 29 8-36 63-91 (137)
65 PF14193 DUF4315: Domain of un 31.2 1.3E+02 0.0029 18.6 4.4 36 8-43 33-68 (83)
66 PF13350 Y_phosphatase3: Tyros 31.2 32 0.00069 22.8 1.4 43 25-77 110-152 (164)
67 TIGR03018 pepcterm_TyrKin exop 31.1 1E+02 0.0022 21.0 4.1 56 23-78 10-68 (207)
68 CHL00072 chlL photochlorophyll 31.0 28 0.00061 25.5 1.3 26 53-78 5-31 (290)
69 cd07311 terB_like_1 tellurium 30.2 1.5E+02 0.0032 20.1 4.7 31 8-38 20-55 (150)
70 cd01983 Fer4_NifH The Fer4_Nif 30.0 33 0.00072 19.1 1.2 26 53-78 4-30 (99)
71 PF03695 UPF0149: Uncharacteri 29.9 1.3E+02 0.0028 19.7 4.2 35 10-44 3-39 (177)
72 KOG1232|consensus 29.9 51 0.0011 26.8 2.6 36 24-64 399-439 (511)
73 cd02032 Bchl_like This family 29.8 34 0.00073 24.2 1.4 26 53-78 5-31 (267)
74 cd02036 MinD Bacterial cell di 28.9 32 0.0007 22.1 1.2 25 54-78 6-31 (179)
75 COG0003 ArsA Predicted ATPase 28.8 29 0.00063 26.4 1.0 26 53-78 7-33 (322)
76 COG0169 AroE Shikimate 5-dehyd 28.7 81 0.0018 23.6 3.4 43 28-76 108-150 (283)
77 TIGR03327 AMP_phos AMP phospho 28.4 1.6E+02 0.0034 24.1 5.2 40 4-43 98-137 (500)
78 PLN02641 anthranilate phosphor 28.0 1.3E+02 0.0029 23.0 4.5 36 5-41 16-51 (343)
79 TIGR00632 vsr DNA mismatch end 27.9 1.8E+02 0.004 19.1 5.2 39 4-44 2-40 (117)
80 PRK08136 glycosyl transferase 27.9 1.5E+02 0.0033 22.5 4.7 37 5-42 19-56 (317)
81 cd02930 DCR_FMN 2,4-dienoyl-Co 27.8 47 0.001 25.0 2.0 37 21-58 125-161 (353)
82 PF13798 PCYCGC: Protein of un 27.8 1.6E+02 0.0034 20.6 4.5 30 10-39 119-148 (158)
83 cd07944 DRE_TIM_HOA_like 4-hyd 27.7 1.3E+02 0.0028 21.9 4.2 42 3-44 223-265 (266)
84 COG1041 Predicted DNA modifica 27.7 36 0.00079 26.5 1.4 26 31-59 185-211 (347)
85 PRK13869 plasmid-partitioning 27.6 1.3E+02 0.0029 23.2 4.5 56 23-78 87-153 (405)
86 cd02040 NifH NifH gene encodes 27.5 37 0.00079 23.7 1.3 26 53-78 6-32 (270)
87 PF07485 DUF1529: Domain of Un 27.5 56 0.0012 21.7 2.1 21 23-43 65-85 (123)
88 cd00550 ArsA_ATPase Oxyanion-t 27.4 39 0.00085 24.1 1.5 26 53-78 5-31 (254)
89 TIGR02175 PorC_KorC 2-oxoacid: 27.3 27 0.00059 23.6 0.6 26 53-78 6-32 (177)
90 PF14493 HTH_40: Helix-turn-he 26.7 52 0.0011 19.9 1.7 14 17-30 8-21 (91)
91 PRK05820 deoA thymidine phosph 26.6 1.5E+02 0.0032 23.8 4.6 40 4-43 15-54 (440)
92 TIGR02016 BchX chlorophyllide 26.4 41 0.00088 24.8 1.4 26 53-78 5-31 (296)
93 PF06627 DUF1153: Protein of u 26.4 50 0.0011 21.2 1.6 25 17-41 55-79 (90)
94 COG2453 CDC14 Predicted protei 26.3 1.3E+02 0.0029 20.3 3.9 24 53-76 110-133 (180)
95 COG3328 Transposase and inacti 26.3 1E+02 0.0022 24.1 3.7 32 7-38 85-116 (379)
96 cd06664 IscU_like Iron-sulfur 26.1 1.7E+02 0.0038 18.3 4.4 31 9-39 61-91 (123)
97 PF01656 CbiA: CobQ/CobB/MinD/ 25.7 28 0.00061 22.6 0.4 25 54-78 5-30 (195)
98 PF10145 PhageMin_Tail: Phage- 25.6 1.9E+02 0.004 19.3 4.5 33 6-38 113-145 (202)
99 smart00421 HTH_LUXR helix_turn 25.6 1E+02 0.0023 15.6 3.5 25 5-31 3-27 (58)
100 cd02035 ArsA ArsA ATPase funct 25.6 37 0.00081 23.5 1.1 26 53-78 4-30 (217)
101 PF12005 DUF3499: Protein of u 25.4 71 0.0015 21.5 2.3 22 22-43 70-91 (123)
102 PF02216 B: B domain; InterPr 24.9 93 0.002 18.2 2.5 34 5-38 4-37 (54)
103 TIGR02645 ARCH_P_rylase putati 24.9 1.6E+02 0.0035 24.0 4.7 40 4-43 97-136 (493)
104 PRK09522 bifunctional glutamin 24.8 1.7E+02 0.0037 23.7 4.8 35 6-40 213-247 (531)
105 COG0489 Mrp ATPases involved i 24.7 43 0.00093 24.4 1.3 29 50-78 60-89 (265)
106 PRK00188 trpD anthranilate pho 24.7 1.8E+02 0.0039 21.9 4.7 19 7-25 51-69 (339)
107 COG0128 AroA 5-enolpyruvylshik 24.5 2.6E+02 0.0056 22.3 5.7 44 13-58 29-79 (428)
108 PRK08508 biotin synthase; Prov 24.1 84 0.0018 22.9 2.7 33 22-57 162-195 (279)
109 PRK12413 phosphomethylpyrimidi 23.9 1.3E+02 0.0028 20.9 3.6 34 8-42 209-242 (253)
110 PRK08534 pyruvate ferredoxin o 23.6 36 0.00078 23.1 0.7 26 53-78 6-32 (181)
111 cd01173 pyridoxal_pyridoxamine 23.4 1.3E+02 0.0029 20.8 3.6 33 8-41 218-250 (254)
112 TIGR02292 ygfB_yecA yecA famil 22.9 1.1E+02 0.0023 20.0 2.8 34 10-43 3-38 (150)
113 TIGR00721 tfx DNA-binding prot 22.6 1.7E+02 0.0037 19.7 3.8 27 2-30 3-29 (137)
114 PF09228 Prok-TraM: Prokaryoti 22.6 95 0.0021 20.2 2.5 21 20-40 21-42 (102)
115 PRK13185 chlL protochlorophyll 22.6 53 0.0011 23.1 1.4 26 53-78 7-33 (270)
116 KOG3022|consensus 22.5 54 0.0012 25.2 1.4 29 50-78 50-79 (300)
117 PF04558 tRNA_synt_1c_R1: Glut 22.2 1.3E+02 0.0027 20.8 3.2 16 24-39 83-98 (164)
118 TIGR03029 EpsG chain length de 22.0 49 0.0011 23.4 1.1 49 30-78 82-135 (274)
119 PF11106 YjbE: Exopolysacchari 22.0 43 0.00094 21.0 0.7 9 57-65 63-71 (80)
120 PRK10037 cell division protein 21.9 40 0.00087 23.7 0.6 24 55-78 9-33 (250)
121 PF03445 DUF294: Putative nucl 21.8 2E+02 0.0044 18.7 4.0 29 10-38 2-30 (138)
122 KOG2410|consensus 21.6 74 0.0016 26.5 2.2 30 24-54 145-175 (579)
123 PF14769 CLAMP: Flagellar C1a 21.5 2.1E+02 0.0046 17.6 5.5 39 3-41 9-55 (101)
124 PRK02079 pyrroloquinoline quin 21.4 2.1E+02 0.0046 17.7 3.8 36 3-38 46-82 (88)
125 PRK14029 pyruvate/ketoisovaler 21.3 41 0.00089 23.0 0.6 26 53-78 6-32 (185)
126 PF13767 DUF4168: Domain of un 21.2 1E+02 0.0022 18.3 2.2 14 24-37 2-15 (78)
127 PF04069 OpuAC: Substrate bind 21.0 1.4E+02 0.003 21.0 3.2 24 6-29 228-251 (257)
128 TIGR01287 nifH nitrogenase iro 21.0 51 0.0011 23.3 1.0 26 53-78 5-31 (275)
129 cd07212 Pat_PNPLA9 Patatin-lik 20.8 1.7E+02 0.0038 21.7 3.9 27 11-37 41-67 (312)
130 TIGR03419 NifU_clost FeS clust 20.7 2E+02 0.0042 18.5 3.7 26 8-33 59-84 (121)
131 COG1105 FruK Fructose-1-phosph 20.6 1.9E+02 0.0042 22.1 4.1 31 7-38 252-282 (310)
132 PRK11861 bifunctional prephena 20.5 2.2E+02 0.0048 23.5 4.7 59 13-73 267-341 (673)
133 PRK11670 antiporter inner memb 20.4 53 0.0012 25.1 1.1 26 53-78 113-139 (369)
134 CHL00175 minD septum-site dete 20.4 56 0.0012 23.2 1.1 26 53-78 21-47 (281)
135 PRK08561 rps15p 30S ribosomal 20.4 1.6E+02 0.0035 20.4 3.4 25 5-29 27-51 (151)
136 PF11660 DUF3262: Protein of u 20.3 2.1E+02 0.0046 17.2 4.0 25 6-33 1-25 (76)
137 cd02929 TMADH_HD_FMN Trimethyl 20.3 89 0.0019 23.8 2.3 37 21-58 138-174 (370)
138 PRK11119 proX glycine betaine 20.3 2.6E+02 0.0057 21.1 4.8 33 5-37 281-313 (331)
139 COG0822 IscU NifU homolog invo 20.1 2.7E+02 0.0059 18.8 4.4 30 9-38 67-96 (150)
No 1
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=99.96 E-value=1.5e-29 Score=194.54 Aligned_cols=79 Identities=52% Similarity=0.748 Sum_probs=74.5
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccCCCCC-CCceeeeccCCCCCCcchHHHHHHhcCCCCCC
Q psy1333 1 MVTQSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSWGPE-GIVVDKHSTGGVGDKVSIPLVPALAACGLKPS 79 (79)
Q Consensus 1 ~~~g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~~~~~-~~~vD~~gTGGdg~niSt~~a~v~Aa~Gv~Va 79 (79)
|++|+++|+|++|||||+++||||++||++|+++||+++.+++|+.. ++++|+|||||||+||||+++|++|++|+||+
T Consensus 26 i~~G~~~d~QiaAfLmAl~~kGeT~eEi~g~t~Am~~~~~~l~~~~~~~~~vD~~gTGGdG~~iSt~~a~ivAa~Gv~Va 105 (405)
T TIGR02644 26 YTNGEIPDYQMSALLMAIYFNGMTDEETAYLTKAMIDSGEVLDLSSLPGPKVDKHSTGGVGDKVSLVLGPIVAACGVKVA 105 (405)
T ss_pred HHcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcCCCcccCCCeeEEeCCCCCCCCchHHHHHHHHhCCCCEE
Confidence 57899999999999999999999999999999999999999999742 45899999999999999999999999999985
No 2
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=99.95 E-value=1e-28 Score=191.49 Aligned_cols=79 Identities=48% Similarity=0.708 Sum_probs=74.1
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccCCC--CC-CCceeeeccCCCCCCcchHHHHHHhcCCCC
Q psy1333 1 MVTQSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSWG--PE-GIVVDKHSTGGVGDKVSIPLVPALAACGLK 77 (79)
Q Consensus 1 ~~~g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~~~--~~-~~~vD~~gTGGdg~niSt~~a~v~Aa~Gv~ 77 (79)
+++|+++|+|++|||||+++||||.+|+.+|+++|++++.+++|+ +. ++++|+|||||||+||||+++|++|+||++
T Consensus 28 i~~g~i~d~QiaAfLmAl~~kG~t~~Ei~~lt~aM~~sg~~i~~~~~~~~~~~vDkhgTGGdG~niSt~~apivAA~Gv~ 107 (437)
T TIGR02643 28 ITDGSVSEGQIAAFAMAVFFNGMNRDERVALTLAMRDSGDVLDWRSLDLNGPVVDKHSTGGVGDVVSLMLGPIVAACGGY 107 (437)
T ss_pred HHcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcccCcccccCCCeeEecCCCCCCcchhHHHHHHHHhCCCC
Confidence 478999999999999999999999999999999999999999987 21 468999999999999999999999999999
Q ss_pred CC
Q psy1333 78 PS 79 (79)
Q Consensus 78 Va 79 (79)
|+
T Consensus 108 Va 109 (437)
T TIGR02643 108 VP 109 (437)
T ss_pred ee
Confidence 86
No 3
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=99.95 E-value=1e-28 Score=191.62 Aligned_cols=79 Identities=48% Similarity=0.765 Sum_probs=73.9
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccCCCC---CCCceeeeccCCCCCCcchHHHHHHhcCCCC
Q psy1333 1 MVTQSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSWGP---EGIVVDKHSTGGVGDKVSIPLVPALAACGLK 77 (79)
Q Consensus 1 ~~~g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~~~~---~~~~vD~~gTGGdg~niSt~~a~v~Aa~Gv~ 77 (79)
|++|+++|+|++||||++++||||++||.+|+++|++++.+++|+. ..+++|+|||||||+|+||+++|++|++|++
T Consensus 29 i~~G~~~d~QiaAfLmAl~~kG~t~eEi~~lt~Am~~sg~~i~~~~~d~~~~~vDkhgTGGdG~niS~~~a~ivAa~Gv~ 108 (440)
T PRK05820 29 YTDGTVSDGQIAALAMAIFFNGMTRPERVALTLAMRDSGEVLDWSSLNLNGPIVDKHSTGGVGDKISLMLAPMVAACGGY 108 (440)
T ss_pred HHcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcCCCccccCCCCeEEEcCCCCCCccHHHHHHHHHHhCCCC
Confidence 5789999999999999999999999999999999999999998862 1358999999999999999999999999999
Q ss_pred CC
Q psy1333 78 PS 79 (79)
Q Consensus 78 Va 79 (79)
|+
T Consensus 109 Va 110 (440)
T PRK05820 109 VP 110 (440)
T ss_pred EE
Confidence 85
No 4
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=99.95 E-value=7.6e-28 Score=181.79 Aligned_cols=78 Identities=26% Similarity=0.290 Sum_probs=72.4
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccCCCCCCCceeeeccCCCCC---CcchHHHHHHhcCCCC
Q psy1333 1 MVTQSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGVGD---KVSIPLVPALAACGLK 77 (79)
Q Consensus 1 ~~~g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~~~~~~~~vD~~gTGGdg~---niSt~~a~v~Aa~Gv~ 77 (79)
||+|+++|.|++|||+|||+||||++||+||+++|++++.+++.+.. ..+|+|||||||. ||||++|||+|++|+|
T Consensus 29 il~g~~~~~qi~A~L~Alr~Kget~eEi~G~~~am~~~~~~~~~p~~-~~vDi~GTGGDg~~T~NiSt~aA~v~A~~Gv~ 107 (338)
T COG0547 29 ILSGEASPAQIGAFLTALRIKGETPEEIAGFAEAMREHAPKLPVPAA-DPVDIVGTGGDGANTINISTAAAIVAAAAGVP 107 (338)
T ss_pred HhcCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccCCCCCC-CCCCeecCCCCCCCcccchHHHHHHHHhCCCc
Confidence 68999999999999999999999999999999999999888877642 2399999999998 8999999999999999
Q ss_pred CC
Q psy1333 78 PS 79 (79)
Q Consensus 78 Va 79 (79)
|+
T Consensus 108 Va 109 (338)
T COG0547 108 VA 109 (338)
T ss_pred EE
Confidence 96
No 5
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=99.94 E-value=1.4e-27 Score=184.96 Aligned_cols=79 Identities=38% Similarity=0.590 Sum_probs=74.1
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccCCCCC-CCceeeeccCCCCCCcchHHHHHHhcCCCCCC
Q psy1333 1 MVTQSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSWGPE-GIVVDKHSTGGVGDKVSIPLVPALAACGLKPS 79 (79)
Q Consensus 1 ~~~g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~~~~~-~~~vD~~gTGGdg~niSt~~a~v~Aa~Gv~Va 79 (79)
|++|+++|+|++|||||+++||||.+||++|+++|++++.+++|++. ++++|+|||||||+|++.+++|++|+||++|+
T Consensus 28 i~~g~~~d~qiaAfL~Al~~kG~t~~Ei~~lt~aM~~sg~~~~~~~~~~~~vD~~gTGGdG~kt~ni~a~ivAA~Gv~Va 107 (434)
T PRK06078 28 YTNGTIPDYQMSALAMAIYFKDMTDRERADLTMAMVNSGDTIDLSAIEGIKVDKHSTGGVGDTTTLVLAPLVAAFGVPVA 107 (434)
T ss_pred HHcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcccCcccCCCeeEecCCCCCCCCchHHHHHHHHcCCCCee
Confidence 47899999999999999999999999999999999999999998742 35899999999999999999999999999996
No 6
>PRK04350 thymidine phosphorylase; Provisional
Probab=99.94 E-value=7.5e-27 Score=183.07 Aligned_cols=78 Identities=44% Similarity=0.651 Sum_probs=73.8
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccCCCCCCCceeeeccCCC-CCCcchHHHHHHhcCCCCCC
Q psy1333 1 MVTQSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGV-GDKVSIPLVPALAACGLKPS 79 (79)
Q Consensus 1 ~~~g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~~~~~~~~vD~~gTGGd-g~niSt~~a~v~Aa~Gv~Va 79 (79)
|++|+++|+|++|||||+++||||.+||.+|+++|++++.+++|++ ++++|+|||||| |+++|++++|++|+||++|+
T Consensus 106 i~~g~~sd~qiaAfL~Al~~kG~t~~Ei~~lt~AM~~~g~~l~~~~-~~~vDkhgTGGd~g~t~S~~~apivAA~Gv~Va 184 (490)
T PRK04350 106 IVAGRYSDIELSAFLTASAINGLDMDEIEALTRAMVETGERLDWDR-PPVVDKHSIGGVPGNRTTLIVVPIVAAAGLTIP 184 (490)
T ss_pred HHcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcccCCC-CCeEEecCCCCCCCCCEeHHHHHHHHhCCCcee
Confidence 5789999999999999999999999999999999999999999985 569999999999 77899999999999999985
No 7
>PRK07394 hypothetical protein; Provisional
Probab=99.93 E-value=1.3e-26 Score=174.47 Aligned_cols=79 Identities=20% Similarity=0.053 Sum_probs=71.5
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccCCCCCCCceeeeccCCCCC----CcchHHHHHHhcCCC
Q psy1333 1 MVTQSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGVGD----KVSIPLVPALAACGL 76 (79)
Q Consensus 1 ~~~g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~~~~~~~~vD~~gTGGdg~----niSt~~a~v~Aa~Gv 76 (79)
||+|+++|.|++|||++||+||||++||+||+++||+++.+++.+.....+|+|||||||. ||||++|+++|++|+
T Consensus 34 il~g~~~~~q~aAfL~alr~KGET~eEiaG~~~a~~~~~~~~~~~~~~~~~d~~GtggDG~~~t~NiSt~aA~v~A~~Gv 113 (342)
T PRK07394 34 MLLGEATPAQIGAFLIAHRIKRPTPEELAGMLDTYDELGPKLQSPSNQRPPIVFGMPYDGRSRTAPIYPLTALILAAAGQ 113 (342)
T ss_pred HHcCCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCCCCCCCCCceeEEeCCCCCCCCCcccHHHHHHHHHHCCC
Confidence 5899999999999999999999999999999999999998886542124789999999994 899999999999999
Q ss_pred CCC
Q psy1333 77 KPS 79 (79)
Q Consensus 77 ~Va 79 (79)
||+
T Consensus 114 ~V~ 116 (342)
T PRK07394 114 PVV 116 (342)
T ss_pred eEE
Confidence 985
No 8
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=99.93 E-value=2.7e-26 Score=171.41 Aligned_cols=79 Identities=28% Similarity=0.323 Sum_probs=72.8
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccCCCCCCCceeeeccCCCCC---CcchHHHHHHhcCCCC
Q psy1333 1 MVTQSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGVGD---KVSIPLVPALAACGLK 77 (79)
Q Consensus 1 ~~~g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~~~~~~~~vD~~gTGGdg~---niSt~~a~v~Aa~Gv~ 77 (79)
|++|+++|.|++|||+++|+||||++||++|+++|++++.++++++...++|+|||||||+ |+||+++|++|++|+|
T Consensus 22 il~g~~~~~q~~AfL~alr~kget~~Elag~~~a~~~~~~~~~~~~~~~~iD~~gtggdg~~t~nist~~a~vlA~~G~~ 101 (330)
T TIGR01245 22 IMSGEASPAQIAAILAALRIKGETPEEITGFAKAMREHAVKVPGRPVEDLVDIVGTGGDGANTINISTASAFVAAAAGVK 101 (330)
T ss_pred HHcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCccCCCcccccCCCCCCCCccccHHHHHHHHHhCCCE
Confidence 5789999999999999999999999999999999999999988742245899999999998 7999999999999999
Q ss_pred CC
Q psy1333 78 PS 79 (79)
Q Consensus 78 Va 79 (79)
|+
T Consensus 102 V~ 103 (330)
T TIGR01245 102 VA 103 (330)
T ss_pred EE
Confidence 85
No 9
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=99.93 E-value=5.8e-26 Score=178.37 Aligned_cols=78 Identities=37% Similarity=0.597 Sum_probs=73.6
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccCCCCCCCceeeeccCCC-CCCcchHHHHHHhcCCCCCC
Q psy1333 1 MVTQSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGV-GDKVSIPLVPALAACGLKPS 79 (79)
Q Consensus 1 ~~~g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~~~~~~~~vD~~gTGGd-g~niSt~~a~v~Aa~Gv~Va 79 (79)
|++|+++|+|++|||||+++||||.+|+.+|+++|++++.+++|+. ++++|+|||||| |+++|++++|++|+||++|+
T Consensus 112 i~~g~~~d~QiaAfL~Al~~kG~t~~Eia~lt~AM~~sg~~l~~~~-~~vvDkhgTGGd~gnk~nl~~apIVAA~Gv~Va 190 (500)
T TIGR03327 112 IVDDKLSDIEISAFVTASYINGMDMDEIEWLTRAMAETGDMLSFDR-HPIMDKHSIGGVPGNKISLLVVPIVAAAGLTIP 190 (500)
T ss_pred HHcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcccCCC-CCeEEEeCCCCCCCCCEEHHHHHHHHhCCCCee
Confidence 4789999999999999999999999999999999999999999985 569999999999 77899999999999999985
No 10
>PRK08136 glycosyl transferase family protein; Provisional
Probab=99.93 E-value=5.3e-26 Score=170.19 Aligned_cols=79 Identities=20% Similarity=0.153 Sum_probs=71.8
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccCCCCC-CCceeeeccCCCCC--CcchHHHHHHhcCCCC
Q psy1333 1 MVTQSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSWGPE-GIVVDKHSTGGVGD--KVSIPLVPALAACGLK 77 (79)
Q Consensus 1 ~~~g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~~~~~-~~~vD~~gTGGdg~--niSt~~a~v~Aa~Gv~ 77 (79)
|++|+++|.|++|||++||+||||++||+||+++||++..+++.+.. +..+|+||||||++ ||||++|+++|++|+|
T Consensus 32 il~g~~~~~qi~AfL~alr~KgET~eElaG~~~a~~~~~~~~~~~~~~~~~iD~~gtgGd~~t~nist~aA~vlA~~G~~ 111 (317)
T PRK08136 32 MLDGRVPDLELGAILIALRIKGESEAEMLGFLDAMQAHTIPLTPPAGRPMPVVIPSYNGARKQANLTPLLALLLAREGVP 111 (317)
T ss_pred HHcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCCCCCCCceEEeCCCCCCCCCcChHHHHHHHHHHCCCe
Confidence 57899999999999999999999999999999999999988865421 23799999999988 9999999999999999
Q ss_pred CC
Q psy1333 78 PS 79 (79)
Q Consensus 78 Va 79 (79)
|+
T Consensus 112 V~ 113 (317)
T PRK08136 112 VL 113 (317)
T ss_pred EE
Confidence 85
No 11
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.93 E-value=5.5e-26 Score=178.94 Aligned_cols=78 Identities=24% Similarity=0.308 Sum_probs=72.2
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccCCCCCCCceeeeccCCCCC---CcchHHHHHHhcCCCC
Q psy1333 1 MVTQSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGVGD---KVSIPLVPALAACGLK 77 (79)
Q Consensus 1 ~~~g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~~~~~~~~vD~~gTGGdg~---niSt~~a~v~Aa~Gv~ 77 (79)
|++|+++|.|++|||++||+||||++||+||+++||+++.+++.++ ..++|+|||||||. |+||++|||+|++|+|
T Consensus 225 il~g~~~~~qi~AfL~alr~kget~eEl~g~~~a~~~~~~~~~~~~-~~~iD~~gtGgdg~~t~nist~aa~v~A~~Gv~ 303 (531)
T PRK09522 225 VVRGELKPEQLAAALVSMKIRGEHPNEIAGAATALLENAAPFPRPD-YLFADIVGTGGDGSNSINISTASAFVAAACGLK 303 (531)
T ss_pred HHcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCCCC-CCcccccCCCCCCCCCcccHHHHHHHHHhCCCc
Confidence 5789999999999999999999999999999999999998886543 35799999999988 7999999999999999
Q ss_pred CC
Q psy1333 78 PS 79 (79)
Q Consensus 78 Va 79 (79)
|+
T Consensus 304 V~ 305 (531)
T PRK09522 304 VA 305 (531)
T ss_pred EE
Confidence 85
No 12
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=99.92 E-value=1.1e-25 Score=176.62 Aligned_cols=78 Identities=44% Similarity=0.623 Sum_probs=73.5
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccCCCCCCCceeeeccCCC-CCCcchHHHHHHhcCCCCCC
Q psy1333 1 MVTQSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGV-GDKVSIPLVPALAACGLKPS 79 (79)
Q Consensus 1 ~~~g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~~~~~~~~vD~~gTGGd-g~niSt~~a~v~Aa~Gv~Va 79 (79)
|++|+++|+|++|||+|+++||||.+|+.+|+++|++++.+++|+. ++++|+|||||| |+++|++++|++|+||++|+
T Consensus 111 i~~g~~~d~qiaAfL~Al~~kG~t~~Ei~~lt~AM~~sg~~l~~~~-~~~vDkhgTGGd~gnk~ni~~apIvAA~Gv~Va 189 (493)
T TIGR02645 111 IVDERLSDVEISAFLTASAINGMTMDEIEALTIAMADTGEMLEWDR-EPIMDKHSIGGVPGNKTSLIVVPIVAAAGLLIP 189 (493)
T ss_pred HHcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCccCCC-CCeEEEeCCCCCCCCCEeHHHHHHHHhCCCCee
Confidence 4789999999999999999999999999999999999999999985 568999999999 77899999999999999985
No 13
>PLN02641 anthranilate phosphoribosyltransferase
Probab=99.92 E-value=1.3e-25 Score=169.53 Aligned_cols=76 Identities=26% Similarity=0.293 Sum_probs=69.6
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccCCCCCCCceeeeccCCCCC---CcchHHHHHHhcCCCC
Q psy1333 1 MVTQSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGVGD---KVSIPLVPALAACGLK 77 (79)
Q Consensus 1 ~~~g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~~~~~~~~vD~~gTGGdg~---niSt~~a~v~Aa~Gv~ 77 (79)
|++| ++|.|++|||++||+||||++||+||+++||+++.+++.. ...+|+|||||||. ||||+++|++|++|+|
T Consensus 29 il~~-~~~~qigAfL~alr~kget~eEiag~~~a~~~~~~~~~~~--~~~~D~~gtGGdg~~t~nist~aa~v~A~~G~~ 105 (343)
T PLN02641 29 LLDD-ADEAQISAFLVLLRAKGETFEEIAGLARAMIKRARKVDGL--VDAVDIVGTGGDGANTVNISTGSSILAAACGAK 105 (343)
T ss_pred HHcC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCCC--CCCCceeCCCCCCCCccccHHHHHHHHHhCCCe
Confidence 4677 9999999999999999999999999999999999887643 34799999999998 8999999999999999
Q ss_pred CC
Q psy1333 78 PS 79 (79)
Q Consensus 78 Va 79 (79)
|+
T Consensus 106 V~ 107 (343)
T PLN02641 106 VA 107 (343)
T ss_pred EE
Confidence 85
No 14
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.92 E-value=1.7e-25 Score=175.65 Aligned_cols=78 Identities=22% Similarity=0.264 Sum_probs=72.6
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccCCCCCCCceeeeccCCCCC---CcchHHHHHHhcCCCC
Q psy1333 1 MVTQSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGVGD---KVSIPLVPALAACGLK 77 (79)
Q Consensus 1 ~~~g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~~~~~~~~vD~~gTGGdg~---niSt~~a~v~Aa~Gv~ 77 (79)
|++|+++|.|++|||++||+||||++||++|+++||+++.+++++. ...+|+|||||||. ||||++|+++|++|+|
T Consensus 220 il~g~~~~~q~~AfL~alr~kget~~El~g~~~a~~~~~~~~~~~~-~~~~D~~gtggdg~~t~nist~~a~v~A~~G~~ 298 (534)
T PRK14607 220 ITDGNATDAQIAGFLTALRMKGETADELAGFASVMREKSRHIPAPS-PRTVDTCGTGGDGFGTFNISTTSAFVVAAAGVP 298 (534)
T ss_pred HHcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCCCC-CCceEEccCCCCCCCccccHHHHHHHHHhCCCc
Confidence 5789999999999999999999999999999999999999887653 35799999999988 8999999999999999
Q ss_pred CC
Q psy1333 78 PS 79 (79)
Q Consensus 78 Va 79 (79)
|+
T Consensus 299 V~ 300 (534)
T PRK14607 299 VA 300 (534)
T ss_pred EE
Confidence 85
No 15
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=99.91 E-value=4.2e-25 Score=165.39 Aligned_cols=77 Identities=25% Similarity=0.266 Sum_probs=71.8
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccCCCCCCCceeeeccCCCCC---CcchHHHHHHhcCCCC
Q psy1333 1 MVTQSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGVGD---KVSIPLVPALAACGLK 77 (79)
Q Consensus 1 ~~~g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~~~~~~~~vD~~gTGGdg~---niSt~~a~v~Aa~Gv~ 77 (79)
|++|+++|.|++|||+++|+||||++||+||+++|+++..++++++ +.+|+|||||||. |+||++|+++|++|+|
T Consensus 28 il~g~~~~~q~~AfL~alr~kget~~El~g~~~a~~~~~~~~~~~~--~~iDi~gtggdg~~t~nis~~~a~vlA~~G~~ 105 (339)
T PRK00188 28 IMSGEATPAQIAAFLTALRVKGETVDEIAGAARAMREHAVPVPDPD--DAVDIVGTGGDGANTFNISTAAAFVAAAAGVK 105 (339)
T ss_pred HHcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCCCC--CCCcccCCCCCCCCccchHHHHHHHHHhCCCE
Confidence 5789999999999999999999999999999999999999887753 4799999999987 8999999999999999
Q ss_pred CC
Q psy1333 78 PS 79 (79)
Q Consensus 78 Va 79 (79)
|+
T Consensus 106 V~ 107 (339)
T PRK00188 106 VA 107 (339)
T ss_pred EE
Confidence 84
No 16
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=99.91 E-value=1.5e-24 Score=167.57 Aligned_cols=79 Identities=52% Similarity=0.693 Sum_probs=75.0
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccCCCCC-CCceeeeccCCCCCCcchHHHHHHhcCCCCCC
Q psy1333 1 MVTQSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSWGPE-GIVVDKHSTGGVGDKVSIPLVPALAACGLKPS 79 (79)
Q Consensus 1 ~~~g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~~~~~-~~~vD~~gTGGdg~niSt~~a~v~Aa~Gv~Va 79 (79)
+.+|+++|+|++||+||+++||||.+|+..||.||+++|..++|++. ++++|+|||||+|+|+|.+++|++||||++|+
T Consensus 29 ~~~~~i~D~Q~sAf~mAi~f~gM~~~E~~~lT~AMv~SGe~ld~~~~~~~~vDKHStGGVgdk~sL~l~PiVAA~Gl~Vp 108 (435)
T COG0213 29 YVNGTIPDYQISAFLMAIFFRGMTMDEIAALTMAMVDSGEVLDLSDIPGPVVDKHSTGGVGDKTSLILVPIVAAAGLPVP 108 (435)
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCEEeeccCCCceecccCCCCCCcccchhHHHHHHhcCCccc
Confidence 46899999999999999999999999999999999999999999864 57999999999999999999999999999985
No 17
>PRK09071 hypothetical protein; Validated
Probab=99.89 E-value=9e-24 Score=158.32 Aligned_cols=76 Identities=14% Similarity=0.129 Sum_probs=69.7
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccCCCCCCCceee-eccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 1 MVTQSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEGIVVDK-HSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 1 ~~~g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~~~~~~~~vD~-~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
|++|+++|.|++|||++||+||||++||+||+++||+++.+++.+ ..+|+ ||||||+. +++|++||++|++|+||
T Consensus 33 il~g~~~~~q~aAfL~alr~kgeT~eEi~g~~~a~r~~~~~~~~~---~~iD~~~gtG~d~~~~~~~~~a~vlA~~G~~V 109 (323)
T PRK09071 33 ILDGEVEDDQLGAFLMLLRVKEETAEELAGFVEAIRERLQAPPLA---VDLDWPSYAGKRRHLPWYLLAAKLLAQNGYRV 109 (323)
T ss_pred HHcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCC---CceecCCcCCCCCCcccHHHHHHHHHHCCCeE
Confidence 578999999999999999999999999999999999999887633 34998 99999977 89999999999999998
Q ss_pred C
Q psy1333 79 S 79 (79)
Q Consensus 79 a 79 (79)
+
T Consensus 110 ~ 110 (323)
T PRK09071 110 L 110 (323)
T ss_pred E
Confidence 5
No 18
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=99.58 E-value=1.5e-15 Score=90.69 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=33.9
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q psy1333 1 MVTQSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGE 40 (79)
Q Consensus 1 ~~~g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~ 40 (79)
|++|+++|.|++|||+++++||||++||++++++||+++.
T Consensus 27 i~~g~~s~~qiaAfL~al~~kget~~Eiag~~~am~~~a~ 66 (66)
T PF02885_consen 27 ILDGEVSDAQIAAFLMALRMKGETPEEIAGFAKAMREHAT 66 (66)
T ss_dssp HHTTSS-HHHHHHHHHHHHHH---HHHHHHHHHHHHHTSB
T ss_pred HHcCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhcc
Confidence 4789999999999999999999999999999999999873
No 19
>PF00591 Glycos_transf_3: Glycosyl transferase family, a/b domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR000312 The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1V8G_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 3H5Q_A 1KHD_A 1KGZ_B 1AZY_A 1OTP_A ....
Probab=99.23 E-value=2.2e-12 Score=92.74 Aligned_cols=31 Identities=42% Similarity=0.523 Sum_probs=28.8
Q ss_pred CceeeeccCCCCC---CcchHHHHHHhcCCCCCC
Q psy1333 49 IVVDKHSTGGVGD---KVSIPLVPALAACGLKPS 79 (79)
Q Consensus 49 ~~vD~~gTGGdg~---niSt~~a~v~Aa~Gv~Va 79 (79)
++||+|||||||. ||||++||++|++|+||+
T Consensus 2 ~~~D~~gTGGd~~~t~niSt~~a~vlAa~G~~V~ 35 (252)
T PF00591_consen 2 PVVDICGTGGDGDKTFNISTAAAIVLAAAGVPVA 35 (252)
T ss_dssp TEEEEEESSCSSSTBHHHHHHHHHHHHHTTSEEE
T ss_pred CceEEecCCCCCCCceehHHHHHHHHHccCCcEe
Confidence 5799999999998 689999999999999984
No 20
>KOG1438|consensus
Probab=99.01 E-value=8.3e-10 Score=83.56 Aligned_cols=70 Identities=24% Similarity=0.271 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhcC-C-CHHHHHHHHHHHHhhCC----ccC----CCCC--CCceeeeccCCCCC---CcchHHHHHHhcC
Q psy1333 10 VPRAMLMAMFING-L-TNEETIALTKSMVDSGE----TLS----WGPE--GIVVDKHSTGGVGD---KVSIPLVPALAAC 74 (79)
Q Consensus 10 qiaafL~al~~kG-e-t~~Ei~g~~~am~~~~~----~~~----~~~~--~~~vD~~gTGGdg~---niSt~~a~v~Aa~ 74 (79)
+.+.||++|+... | .+|=|....+++..+.. ++. .+++ +..+|++||||||. |+||.+++++|+|
T Consensus 52 ~~~sfl~~L~~Tkae~~~e~l~ea~~al~s~s~~~~~pla~~~m~hpr~~~~~vDIVGTGGDG~NTfNvST~saIvAag~ 131 (373)
T KOG1438|consen 52 ETLSFLVDLSETKAESSLEFLLEANEALISASLVLLVPLARAMMKHPRKVEDAVDIVGTGGDGANTFNVSTGSAIVAAGC 131 (373)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhccccchhhhhCcccCCceeEEeccCCCCcceeeecchHHHHHhcc
Confidence 4589999998643 3 55556888899998883 322 1111 34899999999998 7999999999999
Q ss_pred CCCCC
Q psy1333 75 GLKPS 79 (79)
Q Consensus 75 Gv~Va 79 (79)
|.+|+
T Consensus 132 Glkvc 136 (373)
T KOG1438|consen 132 GLKVC 136 (373)
T ss_pred cchhh
Confidence 99984
No 21
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=82.04 E-value=3.3 Score=24.07 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=27.2
Q ss_pred CCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCcc
Q psy1333 4 QSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETL 42 (79)
Q Consensus 4 g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~ 42 (79)
.+++..|+..++-.+.....++.++.+|--+|+-++...
T Consensus 13 ~~Ls~~e~~~~~~~i~~g~~s~~qiaAfL~al~~kget~ 51 (66)
T PF02885_consen 13 EDLSREEAKAAFDAILDGEVSDAQIAAFLMALRMKGETP 51 (66)
T ss_dssp ----HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH---H
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCcCH
Confidence 467889999999888766669999999999999988553
No 22
>PHA00438 hypothetical protein
Probab=68.90 E-value=6.7 Score=24.66 Aligned_cols=32 Identities=13% Similarity=0.074 Sum_probs=23.1
Q ss_pred CChHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy1333 6 DTNNVPRAMLMAMFINGLTNEETIALTKSMVD 37 (79)
Q Consensus 6 ~~~~qiaafL~al~~kGet~~Ei~g~~~am~~ 37 (79)
+|++=|+.||.+++.--.+.||+...-+.+++
T Consensus 49 ~SE~~IaGfl~Gl~yAs~~ldeme~r~~ql~e 80 (81)
T PHA00438 49 YSEAFIAGFLAGLQYASRTLDEMEARREQLRE 80 (81)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 57777788888887777777777766655543
No 23
>PF13822 ACC_epsilon: Acyl-CoA carboxylase epsilon subunit
Probab=64.89 E-value=7.8 Score=22.65 Aligned_cols=19 Identities=16% Similarity=0.111 Sum_probs=11.1
Q ss_pred CCCCCChHHHHHHHHHHHh
Q psy1333 2 VTQSDTNNVPRAMLMAMFI 20 (79)
Q Consensus 2 ~~g~~~~~qiaafL~al~~ 20 (79)
.+|+-|++|++|+...|..
T Consensus 7 vrGnPt~eElAAL~aVlaa 25 (62)
T PF13822_consen 7 VRGNPTDEELAALTAVLAA 25 (62)
T ss_pred eCCCCCHHHHHHHHHHHHH
Confidence 4566666666666555543
No 24
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=64.18 E-value=12 Score=24.81 Aligned_cols=31 Identities=26% Similarity=0.261 Sum_probs=19.0
Q ss_pred CCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCc
Q psy1333 5 SDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGET 41 (79)
Q Consensus 5 ~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~ 41 (79)
+.+.++--+|| +.||+|.+||. ++|.+....
T Consensus 20 ~sp~~~k~~FL---~sKGLt~~EI~---~al~~a~~~ 50 (136)
T PF04695_consen 20 NSPLEKKIAFL---ESKGLTEEEID---EALGRAGSP 50 (136)
T ss_dssp CS-HHHHHHHH---HHCT--HHHHH---HHHHHHT--
T ss_pred cCCHHHHHHHH---HcCCCCHHHHH---HHHHhcCCc
Confidence 35667778896 89999999998 445444433
No 25
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=60.05 E-value=12 Score=21.40 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=20.9
Q ss_pred hcCCCHHHHHHHHHHHHhhCCccC
Q psy1333 20 INGLTNEETIALTKSMVDSGETLS 43 (79)
Q Consensus 20 ~kGet~~Ei~g~~~am~~~~~~~~ 43 (79)
+.|.+.+|+..+.+++|+.+.+++
T Consensus 6 ~~g~~~~el~~~l~~~r~~~~~~~ 29 (58)
T PF12646_consen 6 FSGFSGEELDKFLDALRKAGIPIP 29 (58)
T ss_pred ECCCCHHHHHHHHHHHHHcCCCcc
Confidence 678999999999999999988654
No 26
>PRK15442 beta-lactamase TEM; Provisional
Probab=57.26 E-value=51 Score=24.42 Aligned_cols=59 Identities=17% Similarity=0.152 Sum_probs=40.9
Q ss_pred CCCChHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhCCc---c--CCCCCCCceeeeccCCCCC-C
Q psy1333 4 QSDTNNVPRAMLMAMFING-LTNEETIALTKSMVDSGET---L--SWGPEGIVVDKHSTGGVGD-K 62 (79)
Q Consensus 4 g~~~~~qiaafL~al~~kG-et~~Ei~g~~~am~~~~~~---~--~~~~~~~~vD~~gTGGdg~-n 62 (79)
+..|+..++.+|-.+.... .+++.-.-+.+-|.+.... + .+|+.-.+.||.|||+.|. |
T Consensus 175 nttTP~~ma~lL~~l~~g~~Ls~~s~~~L~~~M~~~~tg~~rl~a~LP~g~~vahKTGt~~~~~~~ 240 (284)
T PRK15442 175 DTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRG 240 (284)
T ss_pred CccCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCChhhhhhcCCCCCEEeecCCCCCCCCcc
Confidence 4568999999998886432 4777777888888875421 2 2333124899999998876 5
No 27
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=56.27 E-value=39 Score=20.51 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=11.3
Q ss_pred cCCCHHHHHHHHHHHHhhCCc
Q psy1333 21 NGLTNEETIALTKSMVDSGET 41 (79)
Q Consensus 21 kGet~~Ei~g~~~am~~~~~~ 41 (79)
++.++.||..+=+.+.+.|.+
T Consensus 27 ~~Vs~~EI~~~Eq~Li~eG~~ 47 (71)
T PF04282_consen 27 SDVSASEISAAEQELIQEGMP 47 (71)
T ss_pred CCCCHHHHHHHHHHHHHcCCC
Confidence 455555555555555555433
No 28
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=54.07 E-value=18 Score=23.82 Aligned_cols=27 Identities=33% Similarity=0.266 Sum_probs=20.4
Q ss_pred CChHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy1333 6 DTNNVPRAMLMAMFINGLTNEETIALTK 33 (79)
Q Consensus 6 ~~~~qiaafL~al~~kGet~~Ei~g~~~ 33 (79)
-+|..+-++.-|++ +|.|.+||..+++
T Consensus 8 Ptd~Rlf~i~eAlr-rG~sveeI~e~T~ 34 (123)
T PF02787_consen 8 PTDERLFAIAEALR-RGYSVEEIHELTK 34 (123)
T ss_dssp TBTTHHHHHHHHHH-TTB-HHHHHHHH-
T ss_pred CCCcHHHHHHHHHH-cCCCHHHHHHHHC
Confidence 46777888888885 7999999998774
No 29
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=54.00 E-value=21 Score=27.47 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHhhCCccCCCCCCCcee-eeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 22 GLTNEETIALTKSMVDSGETLSWGPEGIVVD-KHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 22 Get~~Ei~g~~~am~~~~~~~~~~~~~~~vD-~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
+-|.+||..+.+.+.....+-+-.+ ..+|= ...-||.|+ -++.-.|-.+|..|.+|
T Consensus 81 ~ytl~eI~~lr~~~~~~~~r~~~~~-~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rV 138 (387)
T PHA02519 81 GYTIDQISHMRDHFGNPNQRPDDKN-PVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRV 138 (387)
T ss_pred eEcHHHHHHHHHHhhccccCcCCCC-ceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcE
Confidence 6899999998888764222111110 12332 245599998 55666677788889887
No 30
>TIGR00778 ahpD_dom alkylhydroperoxidase AhpD family core domain. Members of the family include the alkylhydroperoxidase AhpD of Mycobacterium tuberculosis, a macrophage infectivity potentiator peptide of Legionella pneumophila, and an uncharacterized peptide in the tetrachloroethene reductive dehalogenase operon of Dehalospirillum multivorans. We suggest that many peptides containing this domain may have alkylhydroperoxidase or related antioxidant activity.
Probab=51.02 E-value=37 Score=17.92 Aligned_cols=27 Identities=19% Similarity=-0.002 Sum_probs=20.0
Q ss_pred ChHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy1333 7 TNNVPRAMLMAMFINGLTNEETIALTK 33 (79)
Q Consensus 7 ~~~qiaafL~al~~kGet~~Ei~g~~~ 33 (79)
.++++..-....+..|.|.+||....+
T Consensus 21 C~yc~~~H~~~a~~~G~~~~ei~~v~~ 47 (50)
T TIGR00778 21 CGYCLDAHTKLARKAGVTAEELAEALA 47 (50)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 356777777777788999999876543
No 31
>PF15056 NRN1: Neuritin protein family
Probab=49.93 E-value=10 Score=24.26 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHhhCCccCCCCCCCceeeeccC
Q psy1333 23 LTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTG 57 (79)
Q Consensus 23 et~~Ei~g~~~am~~~~~~~~~~~~~~~vD~~gTG 57 (79)
.=++|-+...+.+|+-+.+++++ +.+.|.||.+
T Consensus 52 ~C~eeAa~iWEsLrqESrk~~f~--GnL~dLCs~~ 84 (89)
T PF15056_consen 52 DCPEEAAAIWESLRQESRKMQFQ--GNLFDLCSSR 84 (89)
T ss_pred CCcHHHHHHHHHHHHHHHcCCCC--CcHHHHhCCC
Confidence 34689999999999999999987 4688999754
No 32
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=48.85 E-value=32 Score=20.45 Aligned_cols=22 Identities=23% Similarity=0.149 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHH
Q psy1333 10 VPRAMLMAMFINGLTNEETIAL 31 (79)
Q Consensus 10 qiaafL~al~~kGet~~Ei~g~ 31 (79)
++++.-+|-+.+|.|++||..+
T Consensus 33 ~~~~~~iA~~i~gks~eeir~~ 54 (78)
T PF01466_consen 33 DLCCKYIANMIKGKSPEEIRKY 54 (78)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHH
Confidence 4566777888999999999643
No 33
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=47.98 E-value=39 Score=20.60 Aligned_cols=28 Identities=18% Similarity=-0.067 Sum_probs=23.4
Q ss_pred CCCChHHHHHHHHHHHhcCCCHHHHHHH
Q psy1333 4 QSDTNNVPRAMLMAMFINGLTNEETIAL 31 (79)
Q Consensus 4 g~~~~~qiaafL~al~~kGet~~Ei~g~ 31 (79)
.++++..-.+|.+.-+..|+|..||+..
T Consensus 14 ~~l~~~~r~af~L~R~~eGlS~kEIAe~ 41 (73)
T TIGR03879 14 TWVDSLAEAAAALAREEAGKTASEIAEE 41 (73)
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3577888889999977899999999854
No 34
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=47.95 E-value=33 Score=20.95 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=18.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHh
Q psy1333 15 LMAMFINGLTNEETIALTKSMVD 37 (79)
Q Consensus 15 L~al~~kGet~~Ei~g~~~am~~ 37 (79)
+.+|+-+|.|.++|..+-++++.
T Consensus 20 ~vGLrR~Gfs~~~i~~l~~ayr~ 42 (83)
T PF13720_consen 20 LVGLRRRGFSKEEISALRRAYRI 42 (83)
T ss_dssp HHHHHHTTS-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHH
Confidence 46789999999999988888774
No 35
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=46.71 E-value=64 Score=19.44 Aligned_cols=37 Identities=16% Similarity=0.055 Sum_probs=29.4
Q ss_pred CCCCCChHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhh
Q psy1333 2 VTQSDTNNVPRAMLMAMFIN-GLTNEETIALTKSMVDS 38 (79)
Q Consensus 2 ~~g~~~~~qiaafL~al~~k-Get~~Ei~g~~~am~~~ 38 (79)
.+|++++.|+..+---+... +.+.+|...+.+.....
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~ 49 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEAL 49 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 47999999999998887775 88888887776666553
No 36
>PRK13236 nitrogenase reductase; Reviewed
Probab=46.45 E-value=13 Score=27.18 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=24.8
Q ss_pred ceeeeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 50 VVDKHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 50 ~vD~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
++=..|=||+|+ ++|.-.|..+|..|.+|
T Consensus 8 ~~~~~GKGGVGKTt~a~NLA~~La~~G~rV 37 (296)
T PRK13236 8 QIAFYGKGGIGKSTTSQNTLAAMAEMGQRI 37 (296)
T ss_pred EEEEECCCcCCHHHHHHHHHHHHHHCCCcE
Confidence 445589999999 88888899999999887
No 37
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=43.72 E-value=15 Score=25.12 Aligned_cols=27 Identities=37% Similarity=0.444 Sum_probs=20.9
Q ss_pred eeeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 52 DKHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 52 D~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
=+.|-||+|+ .+|.-.|-.+|..|.+|
T Consensus 4 av~gKGGvGKTt~~~nLA~~la~~G~rv 31 (212)
T cd02117 4 AIYGKGGIGKSTTSQNLSAALAEMGKKV 31 (212)
T ss_pred EEECCCcCcHHHHHHHHHHHHHHCCCcE
Confidence 3468899998 67777788888888765
No 38
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=43.19 E-value=1.1e+02 Score=21.22 Aligned_cols=70 Identities=26% Similarity=0.257 Sum_probs=39.0
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccCCCCC-C-----------------------CceeeeccC
Q psy1333 2 VTQSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSWGPE-G-----------------------IVVDKHSTG 57 (79)
Q Consensus 2 ~~g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~~~~~-~-----------------------~~vD~~gTG 57 (79)
++|..|-.||-.-|. ++-+.+++..+.+.|.+++.-.+..+. . ..|=+-|-|
T Consensus 39 LdG~rt~~eI~~~l~----~~~p~~~v~~~L~~L~~~G~l~~~~~~~~~~~~~f~~~~g~~~~~a~~~l~~~~V~V~~~G 114 (193)
T TIGR03882 39 LDGRRTLDEIIAALA----GRFPAEEVLYALDRLERRGYLVEDAPELPPAAAAFWSGLGVDPAAALERLRQLTVTVLSFG 114 (193)
T ss_pred HcCCCCHHHHHHHhh----ccCCHHHHHHHHHHHHHCCCEeccCCCCCHHHHHHHHHcCCCHHHHHHHHhcCcEEEEecC
Confidence 456666666654432 234567777777777777754432110 0 134456667
Q ss_pred CCCCCcchHHHHHHhcCCCCC
Q psy1333 58 GVGDKVSIPLVPALAACGLKP 78 (79)
Q Consensus 58 Gdg~niSt~~a~v~Aa~Gv~V 78 (79)
|.+.+- .+-.++++|+.+
T Consensus 115 ~~~~~~---l~~aLaa~Gv~~ 132 (193)
T TIGR03882 115 EGGAAA---LAAALAAAGIRI 132 (193)
T ss_pred CCcHHH---HHHHHHHcCCCc
Confidence 665441 333478888875
No 39
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=42.69 E-value=16 Score=25.98 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=21.9
Q ss_pred eeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 53 KHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 53 ~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
.+|=||+|+ .++.-.|..+|..|.+|
T Consensus 6 v~gKGGVGKTT~a~nLA~~La~~G~rV 32 (273)
T PRK13232 6 IYGKGGIGKSTTTQNLTAALSTMGNKI 32 (273)
T ss_pred EECCCCCcHHHHHHHHHHHHHhhCCCe
Confidence 458899999 77888888889999887
No 40
>PRK14487 cbb3-type cytochrome c oxidase subunit II; Provisional
Probab=41.64 E-value=1.4e+02 Score=21.91 Aligned_cols=57 Identities=11% Similarity=0.107 Sum_probs=41.2
Q ss_pred CCCCChHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhhCCccCCCCCCCceeeeccCCCCCCcchHHHHHH
Q psy1333 3 TQSDTNNVPRAMLMAMFINGL--TNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGVGDKVSIPLVPAL 71 (79)
Q Consensus 3 ~g~~~~~qiaafL~al~~kGe--t~~Ei~g~~~am~~~~~~~~~~~~~~~vD~~gTGGdg~niSt~~a~v~ 71 (79)
+.++.-..+.+.|.+|+.-|- |.+||......+...+.++.. | |+-.+++-+.|+|+
T Consensus 143 ~~~ld~~~~~~~l~~l~~~gvPYt~~~i~~a~~~~~~~a~~~~~-------~-----~~~~~~te~~AliA 201 (217)
T PRK14487 143 ENDLDGTDTAEKMTALRVVGVPYTDEDIAGAKAAVKGKADPIAD-------D-----GDPGEITEMDALIA 201 (217)
T ss_pred cccCCHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHhhccccc-------c-----ccCCCccHHHHHHH
Confidence 445666789999999998886 899999999999888766531 1 44336666666663
No 41
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=40.15 E-value=46 Score=25.62 Aligned_cols=56 Identities=25% Similarity=0.210 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHhhCCccCCCCCCCceee-eccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 22 GLTNEETIALTKSMVDSGETLSWGPEGIVVDK-HSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 22 Get~~Ei~g~~~am~~~~~~~~~~~~~~~vD~-~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
|-|.+||..+.+.+.+...+-+ .....+|=+ ..=||.|+ .++.-.|-.+|..|.+|
T Consensus 81 ~ftL~ei~~lr~~~~~~~~r~~-~~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rV 138 (388)
T PRK13705 81 GYTIEQINHMRDVFGTRLRRAE-DVFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRV 138 (388)
T ss_pred CcCHHHHHHHHHhhcccccccC-CCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCe
Confidence 7999999998887754322211 111123322 44588898 56777777788889887
No 42
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=39.59 E-value=37 Score=18.01 Aligned_cols=33 Identities=24% Similarity=0.173 Sum_probs=21.6
Q ss_pred CCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy1333 3 TQSDTNNVPRAMLMAMFINGLTNEETIALTKSM 35 (79)
Q Consensus 3 ~g~~~~~qiaafL~al~~kGet~~Ei~g~~~am 35 (79)
+|.++..++-.+|..+..+..+.+|+..+.+.+
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~ 34 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREF 34 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhc
Confidence 467777887777744433338888877665544
No 43
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=39.42 E-value=19 Score=23.65 Aligned_cols=26 Identities=42% Similarity=0.592 Sum_probs=21.2
Q ss_pred eeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 53 KHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 53 ~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
..+-||.|+ .+|.-.|-.+|..|.+|
T Consensus 5 ~s~kgG~GKTt~a~~LA~~la~~g~~v 31 (169)
T cd02037 5 MSGKGGVGKSTVAVNLALALAKLGYKV 31 (169)
T ss_pred ecCCCcCChhHHHHHHHHHHHHcCCcE
Confidence 356799999 67888888888889876
No 44
>PF08069 Ribosomal_S13_N: Ribosomal S13/S15 N-terminal domain; InterPro: IPR012606 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found at the N terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 2XZN_O 2XZM_O 3IZ6_O.
Probab=38.00 E-value=25 Score=20.85 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=19.1
Q ss_pred CCChHHHHHHHHHHHhcCCCHHHHH
Q psy1333 5 SDTNNVPRAMLMAMFINGLTNEETI 29 (79)
Q Consensus 5 ~~~~~qiaafL~al~~kGet~~Ei~ 29 (79)
+++..|+-...+-|..||.|+.+|=
T Consensus 27 ~~~~~eVe~~I~klakkG~tpSqIG 51 (60)
T PF08069_consen 27 KYSPEEVEELIVKLAKKGLTPSQIG 51 (60)
T ss_dssp -S-HHHHHHHHHHHCCTTHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHhh
Confidence 3567888888888888898888874
No 45
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=37.76 E-value=14 Score=27.47 Aligned_cols=26 Identities=38% Similarity=0.497 Sum_probs=21.4
Q ss_pred eeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 53 KHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 53 ~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
..|-||+|+ -+|.+.|.-+|..|.+|
T Consensus 6 ~~GKGGVGKTT~aaA~A~~~A~~G~rt 32 (305)
T PF02374_consen 6 FGGKGGVGKTTVAAALALALARRGKRT 32 (305)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTS-E
T ss_pred EecCCCCCcHHHHHHHHHHHhhCCCCe
Confidence 489999999 68888888899888764
No 46
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=37.69 E-value=79 Score=19.68 Aligned_cols=28 Identities=21% Similarity=0.106 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCC--CHHHHHHHHHHHH
Q psy1333 9 NVPRAMLMAMFINGL--TNEETIALTKSMV 36 (79)
Q Consensus 9 ~qiaafL~al~~kGe--t~~Ei~g~~~am~ 36 (79)
.|---+|+||+.-|| |++|..-+..-+.
T Consensus 17 ~qkvEIL~ALrkLge~Ls~eE~~FL~~~~~ 46 (78)
T PF06384_consen 17 QQKVEILTALRKLGEKLSPEEEAFLEAHSS 46 (78)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHhh
Confidence 467789999999998 8999887776543
No 47
>PRK03975 tfx putative transcriptional regulator; Provisional
Probab=37.62 E-value=62 Score=21.94 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=22.5
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCHHHHHHH
Q psy1333 2 VTQSDTNNVPRAMLMAMFINGLTNEETIAL 31 (79)
Q Consensus 2 ~~g~~~~~qiaafL~al~~kGet~~Ei~g~ 31 (79)
+...+|+.|..-|.. +.+|.|..||+..
T Consensus 3 ~~~~Lt~rqreVL~l--r~~GlTq~EIAe~ 30 (141)
T PRK03975 3 MESFLTERQIEVLRL--RERGLTQQEIADI 30 (141)
T ss_pred cccCCCHHHHHHHHH--HHcCCCHHHHHHH
Confidence 567889999988754 7899999999753
No 48
>TIGR01913 bet_lambda phage recombination protein Bet. This model represents the phage recombination protein Bet from a number of phage, including phage lambda. All members of this family are found in phage genomes or in putative prophage regions of bacterial genomes.
Probab=36.64 E-value=41 Score=23.80 Aligned_cols=23 Identities=13% Similarity=0.107 Sum_probs=17.7
Q ss_pred CCCCChHHHHHHHHHHHhcCCCH
Q psy1333 3 TQSDTNNVPRAMLMAMFINGLTN 25 (79)
Q Consensus 3 ~g~~~~~qiaafL~al~~kGet~ 25 (79)
.|+.||.|+..||+-.+.+|+.+
T Consensus 28 ~g~~t~~~~~~~l~~c~~~gLnP 50 (188)
T TIGR01913 28 PGDASDDQFIMFLEVCQAKGLNP 50 (188)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCc
Confidence 35678888888888888888776
No 49
>KOG1720|consensus
Probab=36.36 E-value=45 Score=24.65 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhC
Q psy1333 10 VPRAMLMAMFINGLTNEETIALTKSMVDSG 39 (79)
Q Consensus 10 qiaafL~al~~kGet~~Ei~g~~~am~~~~ 39 (79)
-||++|| +..|+|++|..+..|.+|--+
T Consensus 164 liAc~lm--y~~g~ta~eaI~~lR~~RpG~ 191 (225)
T KOG1720|consen 164 LIACYLM--YEYGMTAGEAIAWLRICRPGA 191 (225)
T ss_pred HHHHHHH--HHhCCCHHHHHHHHHhcCCcc
Confidence 4778874 569999999999999999443
No 50
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=35.99 E-value=83 Score=25.15 Aligned_cols=40 Identities=10% Similarity=-0.048 Sum_probs=33.4
Q ss_pred CCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccC
Q psy1333 4 QSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLS 43 (79)
Q Consensus 4 g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~ 43 (79)
.++|.+|+..|+..+.....+..++.+|..+++-++...+
T Consensus 14 ~~Lt~eE~~~~~~~i~~g~~~d~qiaAfL~Al~~kG~t~~ 53 (434)
T PRK06078 14 KELTTEEINFFIEGYTNGTIPDYQMSALAMAIYFKDMTDR 53 (434)
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCHH
Confidence 4689999998888876555688899999999999988754
No 51
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=35.99 E-value=66 Score=20.63 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=22.1
Q ss_pred ChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCc
Q psy1333 7 TNNVPRAMLMAMFINGLTNEETIALTKSMVDSGET 41 (79)
Q Consensus 7 ~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~ 41 (79)
++..-..+|.-| .+-+|.+|+...++.+.+.+..
T Consensus 21 P~~Dy~PLlALL-~r~Ltd~ev~~Va~~L~~~~~~ 54 (96)
T PF11829_consen 21 PPTDYVPLLALL-RRRLTDDEVAEVAAELAARGDP 54 (96)
T ss_dssp -HHHHHHHHHHH-TTTS-HHHHHHHHHHHHHHTSS
T ss_pred CCCccHHHHHHh-cccCCHHHHHHHHHHHHhcCCC
Confidence 344444555444 4559999999999999876643
No 52
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=35.87 E-value=22 Score=25.42 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=21.8
Q ss_pred eeeeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 51 VDKHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 51 vD~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
+=.+|=||+|+ .++.-.|-.+|..|.+|
T Consensus 4 i~~~gKGGVGKTT~a~nLA~~La~~G~rV 32 (279)
T PRK13230 4 FCFYGKGGIGKSTTVCNIAAALAESGKKV 32 (279)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhCCCEE
Confidence 34579999999 66777788888888776
No 53
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=35.84 E-value=84 Score=24.85 Aligned_cols=40 Identities=10% Similarity=0.006 Sum_probs=31.5
Q ss_pred CCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccC
Q psy1333 4 QSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLS 43 (79)
Q Consensus 4 g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~ 43 (79)
.++|.+|+..|+..+.....++.++.+|..+++-++...+
T Consensus 12 ~~Lt~eE~~~~~~~i~~G~~~d~QiaAfLmAl~~kGeT~e 51 (405)
T TIGR02644 12 KKLSDEEINFFINGYTNGEIPDYQMSALLMAIYFNGMTDE 51 (405)
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCHH
Confidence 4688889888877765444578899999999999987754
No 54
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=35.63 E-value=25 Score=25.38 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHhhCCccCCCCCCCceee-eccCC
Q psy1333 24 TNEETIALTKSMVDSGETLSWGPEGIVVDK-HSTGG 58 (79)
Q Consensus 24 t~~Ei~g~~~am~~~~~~~~~~~~~~~vD~-~gTGG 58 (79)
||.+|+.+.-.+.. ......++|. ||||+
T Consensus 30 TP~~i~~l~~~~~~------~~~~~~VlDPacGsG~ 59 (311)
T PF02384_consen 30 TPREIVDLMVKLLN------PKKGDSVLDPACGSGG 59 (311)
T ss_dssp --HHHHHHHHHHHT------T-TTEEEEETT-TTSH
T ss_pred hHHHHHHHHHhhhh------ccccceeechhhhHHH
Confidence 99999877766661 1111247887 78886
No 55
>PF13627 LPAM_2: Prokaryotic lipoprotein-attachment site
Probab=35.23 E-value=32 Score=16.84 Aligned_cols=13 Identities=46% Similarity=0.836 Sum_probs=9.7
Q ss_pred hHHHHHHhcCCCC
Q psy1333 65 IPLVPALAACGLK 77 (79)
Q Consensus 65 t~~a~v~Aa~Gv~ 77 (79)
..+++.+++||.|
T Consensus 6 ~~~~~~LsgCG~K 18 (24)
T PF13627_consen 6 LALALALSGCGQK 18 (24)
T ss_pred HHHHHHHHhcccC
Confidence 4567788999975
No 56
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=35.02 E-value=51 Score=18.46 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=9.1
Q ss_pred HHHhcCCCHHHHHH
Q psy1333 17 AMFINGLTNEETIA 30 (79)
Q Consensus 17 al~~kGet~~Ei~g 30 (79)
.+...|+|++||..
T Consensus 26 ~~~~~G~s~eeI~~ 39 (56)
T PF04255_consen 26 DLLAAGESPEEIAE 39 (56)
T ss_dssp HHHHTT--HHHHHH
T ss_pred HHHHcCCCHHHHHH
Confidence 34489999999974
No 57
>PRK09071 hypothetical protein; Validated
Probab=34.80 E-value=99 Score=23.45 Aligned_cols=36 Identities=14% Similarity=0.060 Sum_probs=16.4
Q ss_pred CChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCc
Q psy1333 6 DTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGET 41 (79)
Q Consensus 6 ~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~ 41 (79)
+|.+|.-.++..+-....++.++.+|--+||-++..
T Consensus 21 Lt~eEa~~~~~~il~g~~~~~q~aAfL~alr~kgeT 56 (323)
T PRK09071 21 LTREEARQAMGMILDGEVEDDQLGAFLMLLRVKEET 56 (323)
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCC
Confidence 444444444444322222555555555555555543
No 58
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=34.15 E-value=1.3e+02 Score=22.70 Aligned_cols=17 Identities=18% Similarity=0.034 Sum_probs=8.4
Q ss_pred ChHHHHHHHHHHHhcCC
Q psy1333 7 TNNVPRAMLMAMFINGL 23 (79)
Q Consensus 7 ~~~qiaafL~al~~kGe 23 (79)
|..|+++|.-+++.+..
T Consensus 45 t~~Elag~~~a~~~~~~ 61 (330)
T TIGR01245 45 TPEEITGFAKAMREHAV 61 (330)
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 44455555555554443
No 59
>PRK07394 hypothetical protein; Provisional
Probab=33.70 E-value=81 Score=24.06 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=16.0
Q ss_pred eeeeccCCCCCCcchHHHHHHhcCCCCC
Q psy1333 51 VDKHSTGGVGDKVSIPLVPALAACGLKP 78 (79)
Q Consensus 51 vD~~gTGGdg~niSt~~a~v~Aa~Gv~V 78 (79)
|=+||.-....+.-..++=++.++|+++
T Consensus 115 V~kHGnr~~ssk~GvtsaDvLe~LGv~~ 142 (342)
T PRK07394 115 VVLHGGDRMPTKYGVPLVELWQGLGVDL 142 (342)
T ss_pred EEEECCCCCCCCCCchHHHHHHHCCCCC
Confidence 4466655554444444566667777664
No 60
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=32.58 E-value=95 Score=24.98 Aligned_cols=35 Identities=9% Similarity=0.074 Sum_probs=15.7
Q ss_pred CChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q psy1333 6 DTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGE 40 (79)
Q Consensus 6 ~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~ 40 (79)
+|.+|...++..+.....++.|+.+|-.+||-++.
T Consensus 208 Lt~~ea~~~~~~il~g~~~~~q~~AfL~alr~kge 242 (534)
T PRK14607 208 LSFEEAEDVMEDITDGNATDAQIAGFLTALRMKGE 242 (534)
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC
Confidence 34444444444443222344455555555554444
No 61
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=32.47 E-value=20 Score=25.53 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=21.2
Q ss_pred eeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 53 KHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 53 ~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
..|=||+|+ .++.-.|..+|..|.+|
T Consensus 6 v~~KGGVGKTT~~~nLA~~La~~G~rV 32 (274)
T PRK13235 6 IYGKGGIGKSTTTQNTVAGLAEMGKKV 32 (274)
T ss_pred EeCCCCccHHHHHHHHHHHHHHCCCcE
Confidence 457899999 67777888888899876
No 62
>PRK04350 thymidine phosphorylase; Provisional
Probab=31.87 E-value=1e+02 Score=25.06 Aligned_cols=40 Identities=10% Similarity=0.094 Sum_probs=33.3
Q ss_pred CCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccC
Q psy1333 4 QSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLS 43 (79)
Q Consensus 4 g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~ 43 (79)
.+++.+|+..|+-.+...-.+..|+.+|..+++-++...+
T Consensus 92 ~~Ls~eE~~~~i~~i~~g~~sd~qiaAfL~Al~~kG~t~~ 131 (490)
T PRK04350 92 EKLDKEEIEAIIRDIVAGRYSDIELSAFLTASAINGLDMD 131 (490)
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCHH
Confidence 4789999999988886555688899999999999987653
No 63
>KOG2629|consensus
Probab=31.73 E-value=84 Score=24.16 Aligned_cols=31 Identities=26% Similarity=0.252 Sum_probs=23.2
Q ss_pred CCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCc
Q psy1333 5 SDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGET 41 (79)
Q Consensus 5 ~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~ 41 (79)
+.+..+--.|| +-||.|.+||. .||++.++.
T Consensus 19 ~aPli~kr~FL---ksKGLT~eEI~---eAfk~~gi~ 49 (300)
T KOG2629|consen 19 DAPLIKKREFL---KSKGLTEEEIQ---EAFKRDGIP 49 (300)
T ss_pred cchHHHHHHHH---HhcCCCHHHHH---HHHHhcCCc
Confidence 34566777886 88999999998 677765543
No 64
>TIGR01994 SUF_scaf_2 SUF system FeS assembly protein, NifU family. Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred.
Probab=31.47 E-value=1.3e+02 Score=19.74 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy1333 8 NNVPRAMLMAMFINGLTNEETIALTKSMV 36 (79)
Q Consensus 8 ~~qiaafL~al~~kGet~~Ei~g~~~am~ 36 (79)
-.|.+|=+++-..+|.|.+|+..+.+.+.
T Consensus 63 is~Asas~~~e~i~Gk~~~ea~~l~~~~~ 91 (137)
T TIGR01994 63 ISQASASMMTELIKGKTVEEALSLVEAFS 91 (137)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 35677778888899999999999886533
No 65
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=31.22 E-value=1.3e+02 Score=18.63 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccC
Q psy1333 8 NNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLS 43 (79)
Q Consensus 8 ~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~ 43 (79)
+.+-.-++-.+|.-.+|++|+..|-+.++..+...|
T Consensus 33 E~EN~EIv~~VR~~~mtp~eL~~~L~~~~~~~~~~p 68 (83)
T PF14193_consen 33 EAENLEIVQMVRSMKMTPEELAAFLRAMKSSGQAVP 68 (83)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccccCC
Confidence 344455666778889999999999999987444443
No 66
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=31.16 E-value=32 Score=22.76 Aligned_cols=43 Identities=21% Similarity=0.348 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhhCCccCCCCCCCceeeeccCCCCCCcchHHHHHHhcCCCC
Q psy1333 25 NEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGVGDKVSIPLVPALAACGLK 77 (79)
Q Consensus 25 ~~Ei~g~~~am~~~~~~~~~~~~~~~vD~~gTGGdg~niSt~~a~v~Aa~Gv~ 77 (79)
.+++..+-+.+.++. . +.++ |||.| -+.+=.++++++..+||+
T Consensus 110 ~~~~~~~~~~l~~~~-----~--p~l~--HC~aG-KDRTG~~~alll~~lGV~ 152 (164)
T PF13350_consen 110 AEAYRKIFELLADAP-----G--PVLF--HCTAG-KDRTGVVAALLLSLLGVP 152 (164)
T ss_dssp HHHHHHHHHHHH-TT---------EEE--E-SSS-SSHHHHHHHHHHHHTT--
T ss_pred hHHHHHHHHHhccCC-----C--cEEE--ECCCC-CccHHHHHHHHHHHcCCC
Confidence 677777777777643 1 2344 99988 457888999999999986
No 67
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=31.06 E-value=1e+02 Score=20.96 Aligned_cols=56 Identities=16% Similarity=0.120 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHhhCCccCCCCCCCceeee-ccCCCCC-CcchHHHHHHhc-CCCCC
Q psy1333 23 LTNEETIALTKSMVDSGETLSWGPEGIVVDKH-STGGVGD-KVSIPLVPALAA-CGLKP 78 (79)
Q Consensus 23 et~~Ei~g~~~am~~~~~~~~~~~~~~~vD~~-gTGGdg~-niSt~~a~v~Aa-~Gv~V 78 (79)
...+|+..+.+.++.....-...+...+|=.+ +.||.|+ -++.-.|-.+|. .|.+|
T Consensus 10 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~V 68 (207)
T TIGR03018 10 RIAEEFRKIKRPLLANAFSANRKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTV 68 (207)
T ss_pred HHHHHHHHHHHHHHHhccccccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeE
Confidence 35677777777777544211111112344445 5788888 455556666664 47665
No 68
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=31.02 E-value=28 Score=25.52 Aligned_cols=26 Identities=35% Similarity=0.404 Sum_probs=21.4
Q ss_pred eeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 53 KHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 53 ~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
+.|=||+|+ .++.-.|..+|..|.+|
T Consensus 5 ~~gKGGVGKTTta~nLA~~La~~G~rV 31 (290)
T CHL00072 5 VYGKGGIGKSTTSCNISIALARRGKKV 31 (290)
T ss_pred EECCCCCcHHHHHHHHHHHHHHCCCeE
Confidence 578999999 67777788888899876
No 69
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1. This family includes several uncharacterized bacterial proteins. The prototype of this CD is tellurite resistance protein from Nostoc punctiforme that belongs to COG3793. Its precise biological function and its mechanism responsible for tellurium resistance still remains rather poorly understood.
Probab=30.25 E-value=1.5e+02 Score=20.06 Aligned_cols=31 Identities=23% Similarity=0.066 Sum_probs=17.1
Q ss_pred hHHHHHHHHHH----HhcCC-CHHHHHHHHHHHHhh
Q psy1333 8 NNVPRAMLMAM----FINGL-TNEETIALTKSMVDS 38 (79)
Q Consensus 8 ~~qiaafL~al----~~kGe-t~~Ei~g~~~am~~~ 38 (79)
+.|+.+|+-+| +..|. |..|+..+.+.|.+.
T Consensus 20 ~~~~~~~~~~Ll~iAkADG~Vse~Ei~~~~~~m~~~ 55 (150)
T cd07311 20 NQDKLAYLKALLVCAKGDGVISPEERDWAIGYAAAR 55 (150)
T ss_pred cccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Confidence 55666555443 33443 666666666665554
No 70
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=29.97 E-value=33 Score=19.14 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=17.8
Q ss_pred eeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 53 KHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 53 ~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
.+|.+|.|+ -++...+..++..|.+|
T Consensus 4 ~~g~~G~Gktt~~~~l~~~l~~~g~~v 30 (99)
T cd01983 4 VTGKGGVGKTTLAANLAAALAKRGKRV 30 (99)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 367788887 46666666667677665
No 71
>PF03695 UPF0149: Uncharacterised protein family (UPF0149); InterPro: IPR011978 This group of proteins includes the Escherichia coli proteins YgfB and YecA. The function of these proteins is unknown. The crystal structure is known for the member from Haemophilus influenzae (YgfB, P44882 from SWISSPROT), revealing a multi-helical protein consisting of two tightly associated 3-helical bundles with different twists.; PDB: 1IZM_A.
Probab=29.92 E-value=1.3e+02 Score=19.71 Aligned_cols=35 Identities=9% Similarity=0.006 Sum_probs=21.8
Q ss_pred HHHHHHHHH--HhcCCCHHHHHHHHHHHHhhCCccCC
Q psy1333 10 VPRAMLMAM--FINGLTNEETIALTKSMVDSGETLSW 44 (79)
Q Consensus 10 qiaafL~al--~~kGet~~Ei~g~~~am~~~~~~~~~ 44 (79)
++..||... ....++++|+.||--++.-...+++.
T Consensus 3 ~L~~~L~~~~~~~~~~~~~~l~G~L~al~~~p~~~~~ 39 (177)
T PF03695_consen 3 ELEDFLESDSVPHDAMSLSELHGFLTALLCGPEPIPP 39 (177)
T ss_dssp HHHHHHH----HTTS--HHHHHHHHHHHHHTT----S
T ss_pred HHHHHHHhhcccccCCCHHHHHHHHHHHHHCCCCCCH
Confidence 567788765 33578999999999999988777653
No 72
>KOG1232|consensus
Probab=29.89 E-value=51 Score=26.76 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHhhCCccCCCCCCCceeeeccC--CCCC---Ccc
Q psy1333 24 TNEETIALTKSMVDSGETLSWGPEGIVVDKHSTG--GVGD---KVS 64 (79)
Q Consensus 24 t~~Ei~g~~~am~~~~~~~~~~~~~~~vD~~gTG--Gdg~---niS 64 (79)
..+++..++.+|+++..... .+-|.||-| |||+ |||
T Consensus 399 pL~d~Y~lvn~~~eRl~~~~-----l~~d~~gyGHlGDgNlHLNia 439 (511)
T KOG1232|consen 399 PLEDLYNLVNVMKERLGEAA-----LVGDIVGYGHLGDGNLHLNIA 439 (511)
T ss_pred cHHHHHHHHHHHHHhhhhhh-----hhhcccccccccCCceeEeee
Confidence 34566667777777654432 346789998 5555 665
No 73
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=29.75 E-value=34 Score=24.16 Aligned_cols=26 Identities=38% Similarity=0.423 Sum_probs=20.7
Q ss_pred eeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 53 KHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 53 ~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
..|-||+|+ -+++-.|-.+|..|.+|
T Consensus 5 v~gKGGvGKTT~a~nLA~~la~~G~rv 31 (267)
T cd02032 5 VYGKGGIGKSTTSSNLSVALAKRGKKV 31 (267)
T ss_pred EecCCCCCHHHHHHHHHHHHHHCCCcE
Confidence 468899999 56777778888888776
No 74
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=28.86 E-value=32 Score=22.08 Aligned_cols=25 Identities=40% Similarity=0.531 Sum_probs=19.7
Q ss_pred eccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 54 HSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 54 ~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
.+-||.|+ -++.-.|..++..|.+|
T Consensus 6 ~~kgG~GKtt~a~~la~~l~~~g~~v 31 (179)
T cd02036 6 SGKGGVGKTTTTANLGTALAQLGYKV 31 (179)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCCeE
Confidence 56789998 67777778888888776
No 75
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=28.76 E-value=29 Score=26.42 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=20.7
Q ss_pred eeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 53 KHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 53 ~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
.+|=||+|+ -+|-+.|.-+|..|-+|
T Consensus 7 f~GKGGVGKTT~aaA~A~~lA~~g~kv 33 (322)
T COG0003 7 FTGKGGVGKTTIAAATAVKLAESGKKV 33 (322)
T ss_pred EecCCcccHHHHHHHHHHHHHHcCCcE
Confidence 589999999 67777788888888543
No 76
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=28.73 E-value=81 Score=23.57 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhCCccCCCCCCCceeeeccCCCCCCcchHHHHHHhcCCC
Q psy1333 28 TIALTKSMVDSGETLSWGPEGIVVDKHSTGGVGDKVSIPLVPALAACGL 76 (79)
Q Consensus 28 i~g~~~am~~~~~~~~~~~~~~~vD~~gTGGdg~niSt~~a~v~Aa~Gv 76 (79)
-.||.+++.++..++++.. .-+=+.|.|| .+-++++-++..|+
T Consensus 108 ~~G~~~~L~~~~~~~~~~~--~~vlilGAGG----AarAv~~aL~~~g~ 150 (283)
T COG0169 108 GIGFLRALKEFGLPVDVTG--KRVLILGAGG----AARAVAFALAEAGA 150 (283)
T ss_pred HHHHHHHHHhcCCCcccCC--CEEEEECCcH----HHHHHHHHHHHcCC
Confidence 4688889988877766543 2233599999 56677777777775
No 77
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=28.40 E-value=1.6e+02 Score=24.13 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=33.3
Q ss_pred CCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccC
Q psy1333 4 QSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLS 43 (79)
Q Consensus 4 g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~ 43 (79)
.+++++|+..|+-.+...-.+..|+.+|..|++-++...+
T Consensus 98 ~~Ls~eEi~~ii~~i~~g~~~d~QiaAfL~Al~~kG~t~~ 137 (500)
T TIGR03327 98 EKLTKDEIRAIVADIVDDKLSDIEISAFVTASYINGMDMD 137 (500)
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCHH
Confidence 4789999999998886555688899999999999987653
No 78
>PLN02641 anthranilate phosphoribosyltransferase
Probab=27.97 E-value=1.3e+02 Score=22.99 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=20.1
Q ss_pred CCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCc
Q psy1333 5 SDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGET 41 (79)
Q Consensus 5 ~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~ 41 (79)
++|.+|...++..+. +|.++.++.+|--+||-++..
T Consensus 16 ~Lt~eEa~~~~~~il-~~~~~~qigAfL~alr~kget 51 (343)
T PLN02641 16 DLTEEEAEAALDFLL-DDADEAQISAFLVLLRAKGET 51 (343)
T ss_pred CCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCC
Confidence 455555555554443 346666666666666665554
No 79
>TIGR00632 vsr DNA mismatch endonuclease Vsr. All proteins in this family for which functions are known are G:T mismatch endonucleases that function in a specialized mismatch repair process used usually to repair G:T mismatches in specific sections of the genome. This family was based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Members of this family typically are found near to a DNA cytosine methyltransferase.
Probab=27.91 E-value=1.8e+02 Score=19.14 Aligned_cols=39 Identities=13% Similarity=0.060 Sum_probs=28.7
Q ss_pred CCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccCC
Q psy1333 4 QSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSW 44 (79)
Q Consensus 4 g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~~ 44 (79)
...++.|-+.....++.| .|..|+. +.++++..|.++..
T Consensus 2 d~~~~~~rs~~M~~iR~~-~T~pE~~-lr~~L~~~G~rfR~ 40 (117)
T TIGR00632 2 DKLSPATRSKNMQAIRTK-GTKPEKA-LASLLTGLGLRFRL 40 (117)
T ss_pred CcCCHHHHHHHHHHHhcC-CCHHHHH-HHHHHHhCCCEEEE
Confidence 357888888888888766 5666765 56788888888653
No 80
>PRK08136 glycosyl transferase family protein; Provisional
Probab=27.91 E-value=1.5e+02 Score=22.48 Aligned_cols=37 Identities=24% Similarity=0.254 Sum_probs=25.8
Q ss_pred CCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhhCCcc
Q psy1333 5 SDTNNVPRAMLMAMFINGL-TNEETIALTKSMVDSGETL 42 (79)
Q Consensus 5 ~~~~~qiaafL~al~~kGe-t~~Ei~g~~~am~~~~~~~ 42 (79)
++|.+|.-.++..+ ++|+ ++.++.+|--+||-++...
T Consensus 19 ~Lt~eEA~~~~~~i-l~g~~~~~qi~AfL~alr~KgET~ 56 (317)
T PRK08136 19 DLDRDTARALYGAM-LDGRVPDLELGAILIALRIKGESE 56 (317)
T ss_pred CcCHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHhCCCH
Confidence 66777766666555 4554 7788888888888777754
No 81
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=27.79 E-value=47 Score=24.96 Aligned_cols=37 Identities=14% Similarity=0.026 Sum_probs=27.8
Q ss_pred cCCCHHHHHHHHHHHHhhCCccCCCCCCCceeeeccCC
Q psy1333 21 NGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGG 58 (79)
Q Consensus 21 kGet~~Ei~g~~~am~~~~~~~~~~~~~~~vD~~gTGG 58 (79)
+.+|.+||..+.+.+++.+.+..-.. .+-|++||--|
T Consensus 125 ~~mt~~eI~~i~~~f~~aA~~a~~aG-fDgVeih~ahG 161 (353)
T cd02930 125 RELSEEEIEQTIEDFARCAALAREAG-YDGVEIMGSEG 161 (353)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcC-CCEEEEecccc
Confidence 67999999999999998887753222 35688887544
No 82
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=27.78 E-value=1.6e+02 Score=20.65 Aligned_cols=30 Identities=13% Similarity=0.149 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhhC
Q psy1333 10 VPRAMLMAMFINGLTNEETIALTKSMVDSG 39 (79)
Q Consensus 10 qiaafL~al~~kGet~~Ei~g~~~am~~~~ 39 (79)
+|+..-+.++.+|.|+.||..+.+.=.+.+
T Consensus 119 ~ia~~a~~~~~~Gks~~eIR~~ID~kYk~g 148 (158)
T PF13798_consen 119 DIAVQAVQMYQEGKSPKEIRQYIDEKYKEG 148 (158)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 678888899999999999999998877754
No 83
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=27.74 E-value=1.3e+02 Score=21.87 Aligned_cols=42 Identities=12% Similarity=0.142 Sum_probs=32.3
Q ss_pred CCCCChHHHHHHHHHHHhcCCCHHHHHHHH-HHHHhhCCccCC
Q psy1333 3 TQSDTNNVPRAMLMAMFINGLTNEETIALT-KSMVDSGETLSW 44 (79)
Q Consensus 3 ~g~~~~~qiaafL~al~~kGet~~Ei~g~~-~am~~~~~~~~~ 44 (79)
.|+.+-+++..+|-.++..|...+.+..++ +.++....+++|
T Consensus 223 aGN~~~E~~v~~l~~~~~~~~dl~~l~~~~~~~~~~~~~~~~w 265 (266)
T cd07944 223 AGNLPTELLLDYLNNKFGKKYNLEPVLELIDEYIAPLKKKYEW 265 (266)
T ss_pred cCcHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhccCC
Confidence 367777888877777666788999999999 677777667666
No 84
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=27.65 E-value=36 Score=26.49 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=16.3
Q ss_pred HHHHHHhhCCccCCCCCCCcee-eeccCCC
Q psy1333 31 LTKSMVDSGETLSWGPEGIVVD-KHSTGGV 59 (79)
Q Consensus 31 ~~~am~~~~~~~~~~~~~~~vD-~~gTGGd 59 (79)
++++|.+-+..-+- ..++| -|||||-
T Consensus 185 lAR~mVNLa~v~~G---~~vlDPFcGTGgi 211 (347)
T COG1041 185 LARAMVNLARVKRG---ELVLDPFCGTGGI 211 (347)
T ss_pred HHHHHHHHhccccC---CEeecCcCCccHH
Confidence 56888877655431 13444 3999983
No 85
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=27.59 E-value=1.3e+02 Score=23.18 Aligned_cols=56 Identities=23% Similarity=0.253 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHhh--C-Cc---cCCCCC---CCceeee-ccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 23 LTNEETIALTKSMVDS--G-ET---LSWGPE---GIVVDKH-STGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 23 et~~Ei~g~~~am~~~--~-~~---~~~~~~---~~~vD~~-gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
-|.+||..+.+.+.+. . .+ .++... ..+|=++ .-||.|+ -++.-.|-.+|..|.+|
T Consensus 87 yt~~di~~lr~~l~~~~~~~~~~~~~~~r~~~~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rV 153 (405)
T PRK13869 87 YTLGQINEIRQMLAGSTRGRESIDFVPHRRGSEHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRV 153 (405)
T ss_pred ecHHHHHHHHHHHHhhccccccccccCCCCCCCCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCce
Confidence 5889999999999762 1 11 112111 1233333 4699998 56666777788889876
No 86
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=27.50 E-value=37 Score=23.67 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=20.1
Q ss_pred eeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 53 KHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 53 ~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
.+|=||.|+ -++.-.|..+|..|.+|
T Consensus 6 v~~KGGvGKTT~~~nLA~~La~~G~kV 32 (270)
T cd02040 6 IYGKGGIGKSTTTQNLSAALAEMGKKV 32 (270)
T ss_pred EEeCCcCCHHHHHHHHHHHHHhCCCeE
Confidence 358899998 56777778888888776
No 87
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=27.45 E-value=56 Score=21.68 Aligned_cols=21 Identities=14% Similarity=0.305 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHHHhhCCccC
Q psy1333 23 LTNEETIALTKSMVDSGETLS 43 (79)
Q Consensus 23 et~~Ei~g~~~am~~~~~~~~ 43 (79)
++.+|+.-+.+++|++++.+.
T Consensus 65 ll~~EV~pvi~aL~~~GI~vt 85 (123)
T PF07485_consen 65 LLEDEVNPVISALRKNGIEVT 85 (123)
T ss_pred ecHHHHHHHHHHHHHCCceEE
Confidence 478999999999999999875
No 88
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=27.39 E-value=39 Score=24.14 Aligned_cols=26 Identities=35% Similarity=0.395 Sum_probs=21.3
Q ss_pred eeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 53 KHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 53 ~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
..|-||.|+ -++...+..+|..|.+|
T Consensus 5 ~~gkgG~GKtt~a~~la~~~a~~g~~v 31 (254)
T cd00550 5 FGGKGGVGKTTISAATAVRLAEQGKKV 31 (254)
T ss_pred EECCCCchHHHHHHHHHHHHHHCCCCc
Confidence 478899999 67888888888888775
No 89
>TIGR02175 PorC_KorC 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes the gamma subunit. In Pyrococcus furious, enzymes active on pyruvate and 2-ketoisovalerate share a common gamma subunit.
Probab=27.30 E-value=27 Score=23.64 Aligned_cols=26 Identities=31% Similarity=0.259 Sum_probs=19.5
Q ss_pred eeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 53 KHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 53 ~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
.+|.||+|. -.+...+-.++.+|..|
T Consensus 6 i~G~gGqGv~~ag~ila~a~~~~G~~v 32 (177)
T TIGR02175 6 FHGRGGQGAVTASQLLAEAAFLEGKYA 32 (177)
T ss_pred EEeECcchHHHHHHHHHHHHHhcCceE
Confidence 589999999 46666776677777654
No 90
>PF14493 HTH_40: Helix-turn-helix domain
Probab=26.67 E-value=52 Score=19.90 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=11.1
Q ss_pred HHHhcCCCHHHHHH
Q psy1333 17 AMFINGLTNEETIA 30 (79)
Q Consensus 17 al~~kGet~~Ei~g 30 (79)
.|+.+|+|.+||+.
T Consensus 8 ~l~~~G~si~eIA~ 21 (91)
T PF14493_consen 8 ELFQKGLSIEEIAK 21 (91)
T ss_pred HHHHcCCCHHHHHH
Confidence 35678999999975
No 91
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=26.57 E-value=1.5e+02 Score=23.79 Aligned_cols=40 Identities=10% Similarity=0.030 Sum_probs=32.0
Q ss_pred CCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccC
Q psy1333 4 QSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLS 43 (79)
Q Consensus 4 g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~ 43 (79)
.++|.+|+..|+-.+...-.+..++.+|--+++-++...+
T Consensus 15 ~~Lt~eE~~~~~~~i~~G~~~d~QiaAfLmAl~~kG~t~e 54 (440)
T PRK05820 15 GALSDEEIDWFIDGYTDGTVSDGQIAALAMAIFFNGMTRP 54 (440)
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCHH
Confidence 4688889888887775555599999999999998887653
No 92
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=26.40 E-value=41 Score=24.80 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=20.9
Q ss_pred eeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 53 KHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 53 ~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
+.|-||.|+ .+|.-.|..+|..|.+|
T Consensus 5 v~gKGGvGKTT~a~nLA~~La~~g~rV 31 (296)
T TIGR02016 5 IYGKGGSGKSFTTTNLSHMMAEMGKRV 31 (296)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 358899999 78888888888888776
No 93
>PF06627 DUF1153: Protein of unknown function (DUF1153); InterPro: IPR009534 This family consists of several short, hypothetical bacterial proteins of unknown function.; PDB: 2OA4_A 2JRT_A.
Probab=26.40 E-value=50 Score=21.17 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=17.7
Q ss_pred HHHhcCCCHHHHHHHHHHHHhhCCc
Q psy1333 17 AMFINGLTNEETIALTKSMVDSGET 41 (79)
Q Consensus 17 al~~kGet~~Ei~g~~~am~~~~~~ 41 (79)
|++.-+.|.+|+....++...|+..
T Consensus 55 A~~rY~Ls~eEf~~W~~av~rhge~ 79 (90)
T PF06627_consen 55 ACRRYGLSEEEFESWQRAVDRHGEN 79 (90)
T ss_dssp HHHCTTSSHHHHHHHHHHCCT--TT
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhHH
Confidence 5677788889998888887766643
No 94
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=26.34 E-value=1.3e+02 Score=20.32 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=18.2
Q ss_pred eeccCCCCCCcchHHHHHHhcCCC
Q psy1333 53 KHSTGGVGDKVSIPLVPALAACGL 76 (79)
Q Consensus 53 ~~gTGGdg~niSt~~a~v~Aa~Gv 76 (79)
+||-||-|+--+.++|-++...|.
T Consensus 110 VHC~~GigRSgtviaA~lm~~~~~ 133 (180)
T COG2453 110 VHCQGGIGRSGTVIAAYLMLYGGL 133 (180)
T ss_pred EEcCCCCchHHHHHHHHHHHHcCC
Confidence 599999999777777777665443
No 95
>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=26.30 E-value=1e+02 Score=24.09 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=27.4
Q ss_pred ChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy1333 7 TNNVPRAMLMAMFINGLTNEETIALTKSMVDS 38 (79)
Q Consensus 7 ~~~qiaafL~al~~kGet~~Ei~g~~~am~~~ 38 (79)
.+..+-..++.++.+|+|..|+..+.++|+.+
T Consensus 85 ~~~~~~~~v~~~y~~gv~Tr~i~~~~~~~~~~ 116 (379)
T COG3328 85 RERALDLPVLSMYAKGVTTREIEALLEELYGH 116 (379)
T ss_pred hhhhHHHHHHHHHHcCCcHHHHHHHHHHhhCc
Confidence 34556778899999999999999999999877
No 96
>cd06664 IscU_like Iron-sulfur cluster scaffold-like proteins. IscU_like and NifU_like proteins. IscU and NifU function as a scaffold for the assembly of [2Fe-2S] clusters before they are transferred to apo target proteins. They are highly conserved and play vital roles in the ISC and NIF systems of Fe-S protein maturation. NIF genes participate in nitrogen fixation in several isolated bacterial species. The NifU domain, however, is also found in bacteria that do not fix nitrogen, so it may have wider significance in the cell. Human IscU interacts with frataxin, the Friedreich ataxia gene product, and incorrectly spliced IscU has been shown to disrupt iron homeostasis in skeletal muscle and cause myopathy.
Probab=26.15 E-value=1.7e+02 Score=18.30 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhhC
Q psy1333 9 NVPRAMLMAMFINGLTNEETIALTKSMVDSG 39 (79)
Q Consensus 9 ~qiaafL~al~~kGet~~Ei~g~~~am~~~~ 39 (79)
.|.+|=+++-..+|.|.+|...+...+...-
T Consensus 61 ~~Asas~~~~~~~Gk~~~ea~~i~~~~~~~~ 91 (123)
T cd06664 61 SIASASLLTELIKGKTLDEALKLLNKDIAML 91 (123)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHh
Confidence 4667778888899999999999998887763
No 97
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=25.68 E-value=28 Score=22.63 Aligned_cols=25 Identities=40% Similarity=0.558 Sum_probs=18.1
Q ss_pred eccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 54 HSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 54 ~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
.+-||.|+ .++...|-.+|..|.+|
T Consensus 5 ~~kGG~GKTt~a~~la~~la~~g~~V 30 (195)
T PF01656_consen 5 SGKGGVGKTTIAANLAQALARKGKKV 30 (195)
T ss_dssp ESSTTSSHHHHHHHHHHHHHHTTS-E
T ss_pred cCCCCccHHHHHHHHHhccccccccc
Confidence 56688888 66776777777788776
No 98
>PF10145 PhageMin_Tail: Phage-related minor tail protein; InterPro: IPR010090 This entry is represented by Bacteriophage bIL285, Orf52, tape measure protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a reasonably well conserved core region of a family of phage tail proteins. The member from phage TP901-1 was characterised as a tail length tape measure protein in that a shortened form of the protein leads to phage with proportionately shorter tails [].
Probab=25.64 E-value=1.9e+02 Score=19.30 Aligned_cols=33 Identities=21% Similarity=0.116 Sum_probs=25.2
Q ss_pred CChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy1333 6 DTNNVPRAMLMAMFINGLTNEETIALTKSMVDS 38 (79)
Q Consensus 6 ~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~ 38 (79)
++-.|+.+++..+...|.+.+|..-.-+.+..+
T Consensus 113 ~s~~~~~a~~~~l~~~g~~~~~a~t~l~~~~~~ 145 (202)
T PF10145_consen 113 VSFEELAALLAALAQAGGSASEAGTALKSFLSR 145 (202)
T ss_pred CCHHHHHHHHHHHHHhCcchhHHHHHHHHHHHH
Confidence 566889999999999999888886555555544
No 99
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon
Probab=25.62 E-value=1e+02 Score=15.57 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=18.5
Q ss_pred CCChHHHHHHHHHHHhcCCCHHHHHHH
Q psy1333 5 SDTNNVPRAMLMAMFINGLTNEETIAL 31 (79)
Q Consensus 5 ~~~~~qiaafL~al~~kGet~~Ei~g~ 31 (79)
.+++.|...+.. ...|++..||+..
T Consensus 3 ~l~~~e~~i~~~--~~~g~s~~eia~~ 27 (58)
T smart00421 3 SLTPREREVLRL--LAEGLTNKEIAER 27 (58)
T ss_pred CCCHHHHHHHHH--HHcCCCHHHHHHH
Confidence 567888875543 5799999999843
No 100
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=25.59 E-value=37 Score=23.46 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=20.8
Q ss_pred eeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 53 KHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 53 ~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
+.|.||.|+ .++...+..+|..|.+|
T Consensus 4 ~~g~~g~Gkt~~~~~la~~~a~~g~~~ 30 (217)
T cd02035 4 FTGKGGVGKTTIAAATAVRLAEEGKKV 30 (217)
T ss_pred EeCCCCchHHHHHHHHHHHHHHCCCcE
Confidence 478899988 68888888888888764
No 101
>PF12005 DUF3499: Protein of unknown function (DUF3499); InterPro: IPR021888 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 125 to 163 amino acids in length.
Probab=25.37 E-value=71 Score=21.52 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=18.8
Q ss_pred CCCHHHHHHHHHHHHhhCCccC
Q psy1333 22 GLTNEETIALTKSMVDSGETLS 43 (79)
Q Consensus 22 Get~~Ei~g~~~am~~~~~~~~ 43 (79)
..+.|||.+|++|.|+.+..-.
T Consensus 70 ~p~~DDL~ALAeAVREa~~~~~ 91 (123)
T PF12005_consen 70 PPDDDDLTALAEAVREAGRPAR 91 (123)
T ss_pred CCChhHHHHHHHHHHhhccCCC
Confidence 4578999999999999987654
No 102
>PF02216 B: B domain; InterPro: IPR003132 This entry represents the immunoglobulin-binding domain found in the Staphylococcus aureus virulence factor protein A (SpA). Protein A contains five highly homologous Ig-binding domains in tandem (designated domains E, D, A, B and C), which share a common structure consisting of three helices in a closed left-handed twist. Protein A can exist in both secreted and membrane-bound forms, and has two distinct Ig-binding activities: each domain can bind Fc-gamma (the constant region of IgG involved in effector functions) and Fab (the Ig fragment responsible for antigen recognition) [].; GO: 0019865 immunoglobulin binding, 0009405 pathogenesis; PDB: 1EDL_A 1EDI_A 1EDJ_A 1EDK_A 2B88_A 2B87_A 2B89_A 1FC2_C 1DEE_H 1ZXG_A ....
Probab=24.93 E-value=93 Score=18.15 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=28.7
Q ss_pred CCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy1333 5 SDTNNVPRAMLMAMFINGLTNEETIALTKSMVDS 38 (79)
Q Consensus 5 ~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~ 38 (79)
+..+.|.-||---|.+.+.|.++--++.+.+.+.
T Consensus 4 ~~~~~QQnAFY~vl~~~nLteeQrn~yI~~lKdd 37 (54)
T PF02216_consen 4 NFDVAQQNAFYEVLHMPNLTEEQRNGYIQSLKDD 37 (54)
T ss_dssp THHHHHHHHHHHHHCSTTS-HHHHHHHHHHHHH-
T ss_pred chhHHHHHHHHHHHcCCCcCHHHHHhHHHHHhhC
Confidence 4567899999999999999999999999998875
No 103
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=24.91 E-value=1.6e+02 Score=23.99 Aligned_cols=40 Identities=13% Similarity=0.090 Sum_probs=33.2
Q ss_pred CCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccC
Q psy1333 4 QSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLS 43 (79)
Q Consensus 4 g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~ 43 (79)
.+++.+|+..|...+.....+..|+.+|..|++-++...+
T Consensus 97 ~~Lt~eE~~~ii~~i~~g~~~d~qiaAfL~Al~~kG~t~~ 136 (493)
T TIGR02645 97 AKLDQHEIASIVGDIVDERLSDVEISAFLTASAINGMTMD 136 (493)
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCHH
Confidence 4689999999988886666688899999999999987653
No 104
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=24.79 E-value=1.7e+02 Score=23.72 Aligned_cols=35 Identities=23% Similarity=0.174 Sum_probs=14.4
Q ss_pred CChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q psy1333 6 DTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGE 40 (79)
Q Consensus 6 ~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~ 40 (79)
+|.+|...++..+.....++.++.+|-.+||-++.
T Consensus 213 Lt~eea~~~~~~il~g~~~~~qi~AfL~alr~kge 247 (531)
T PRK09522 213 LSQQESHQLFSAVVRGELKPEQLAAALVSMKIRGE 247 (531)
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC
Confidence 34444443333332222244444444444444443
No 105
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=24.73 E-value=43 Score=24.40 Aligned_cols=29 Identities=34% Similarity=0.554 Sum_probs=23.4
Q ss_pred ceeeeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 50 VVDKHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 50 ~vD~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
++=+-|.||+|+ -+|.-.|..+|..|.+|
T Consensus 60 I~V~S~kgGvGKStva~nLA~alA~~G~rV 89 (265)
T COG0489 60 IAVTSGKGGVGKSTVAVNLAAALAQLGKRV 89 (265)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCcE
Confidence 444688999999 67888888889999876
No 106
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=24.72 E-value=1.8e+02 Score=21.93 Aligned_cols=19 Identities=16% Similarity=-0.059 Sum_probs=13.3
Q ss_pred ChHHHHHHHHHHHhcCCCH
Q psy1333 7 TNNVPRAMLMAMFINGLTN 25 (79)
Q Consensus 7 ~~~qiaafL~al~~kGet~ 25 (79)
|+.|+++|+-+++.+....
T Consensus 51 t~~El~g~~~a~~~~~~~~ 69 (339)
T PRK00188 51 TVDEIAGAARAMREHAVPV 69 (339)
T ss_pred CHHHHHHHHHHHHHhCCcC
Confidence 6777777777777766543
No 107
>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism]
Probab=24.54 E-value=2.6e+02 Score=22.34 Aligned_cols=44 Identities=25% Similarity=0.363 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCC-------HHHHHHHHHHHHhhCCccCCCCCCCceeeeccCC
Q psy1333 13 AMLMAMFINGLT-------NEETIALTKSMVDSGETLSWGPEGIVVDKHSTGG 58 (79)
Q Consensus 13 afL~al~~kGet-------~~Ei~g~~~am~~~~~~~~~~~~~~~vD~~gTGG 58 (79)
|++.+.-.+|+| .+......++++.-|.++++.+ ..+.++|+||
T Consensus 29 alilaaLA~g~s~i~~~L~s~D~~~tl~a~~~lG~~i~~~~--~~~~v~g~g~ 79 (428)
T COG0128 29 ALLLAALAEGESTITNLLDSEDTLATLEALRALGARIEKEG--DTLVVRGTGG 79 (428)
T ss_pred HHHHHHHcCCceEEeeeeccHhHHHHHHHHHHhCCeEEccC--CEEEEeCCCC
Confidence 455555578874 5888999999999999998753 4577899998
No 108
>PRK08508 biotin synthase; Provisional
Probab=24.06 E-value=84 Score=22.86 Aligned_cols=33 Identities=15% Similarity=0.146 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHHhhCCc-cCCCCCCCceeeeccC
Q psy1333 22 GLTNEETIALTKSMVDSGET-LSWGPEGIVVDKHSTG 57 (79)
Q Consensus 22 Get~~Ei~g~~~am~~~~~~-~~~~~~~~~vD~~gTG 57 (79)
|||.+|+......+++.... ++|.- ....-||.
T Consensus 162 GEt~ed~~~~l~~lr~L~~~svpl~~---~~p~~~t~ 195 (279)
T PRK08508 162 GESWEDRISFLKSLASLSPHSTPINF---FIPNPALP 195 (279)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEeeCC---cCCCCCCC
Confidence 89999999999999988766 66542 33445554
No 109
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=23.86 E-value=1.3e+02 Score=20.89 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCcc
Q psy1333 8 NNVPRAMLMAMFINGLTNEETIALTKSMVDSGETL 42 (79)
Q Consensus 8 ~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~ 42 (79)
|.=.++|+.++ .+|.+.+|-..+++++...+++.
T Consensus 209 Daf~a~~~~~l-~~g~~l~ea~~~A~~~~~~~l~~ 242 (253)
T PRK12413 209 CTFASSIASQL-VKGKSPLEAVKNSKDFVYQAIQQ 242 (253)
T ss_pred HHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHH
Confidence 45567777665 68999999999999888877654
No 110
>PRK08534 pyruvate ferredoxin oxidoreductase subunit gamma; Reviewed
Probab=23.59 E-value=36 Score=23.12 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=19.4
Q ss_pred eeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 53 KHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 53 ~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
.+|.||+|. -.+...+-+++..|..|
T Consensus 6 i~G~gGqGv~tag~ila~a~~~~G~~V 32 (181)
T PRK08534 6 FHGRGGQGAVTAAEILAKAAFEDGKFS 32 (181)
T ss_pred EEEECcchHHHHHHHHHHHHHhcCCeE
Confidence 589999998 46666777777777655
No 111
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=23.40 E-value=1.3e+02 Score=20.79 Aligned_cols=33 Identities=12% Similarity=0.168 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCc
Q psy1333 8 NNVPRAMLMAMFINGLTNEETIALTKSMVDSGET 41 (79)
Q Consensus 8 ~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~ 41 (79)
|.=.|+|+.++ .+|.+.+|-..++.++...+++
T Consensus 218 D~f~a~~~~~l-~~g~~~~~a~~~A~~~~~~~i~ 250 (254)
T cd01173 218 DLFAALLLARL-LKGKSLAEALEKALNFVHEVLE 250 (254)
T ss_pred HHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHH
Confidence 55567777776 6999999999999999877654
No 112
>TIGR02292 ygfB_yecA yecA family protein. This family resembles PFAM model pfam03695 (version pfam03695.3), uncharacterised protein family UPF0149, but is broader in scope and includes additional proteins. It includes E. coli proteins YgfB and YecA. The function of this family of proteins is unknown. The crystal structure is known for the member from Haemophilus influenzae (Ygfb, HI0817).
Probab=22.94 E-value=1.1e+02 Score=20.01 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhc--CCCHHHHHHHHHHHHhhCCccC
Q psy1333 10 VPRAMLMAMFIN--GLTNEETIALTKSMVDSGETLS 43 (79)
Q Consensus 10 qiaafL~al~~k--Get~~Ei~g~~~am~~~~~~~~ 43 (79)
++..||.+.... .++++|+.|+--++.-....++
T Consensus 3 ~L~~~L~~~~~~~~~m~~~elhG~L~al~~~p~~~~ 38 (150)
T TIGR02292 3 RLSDFLDALELDGECMNLEELDGFLTALLSGPEVLK 38 (150)
T ss_pred HHHHHHhccCCccccCCHHHHhhHHHHHHhCCCCCC
Confidence 566777777543 7899999999999998877775
No 113
>TIGR00721 tfx DNA-binding protein, Tfx family. Tfx from Methanobacterium thermoautotrophicum is associated with the operon for molybdenum formyl-methanofuran dehydrogenase and binds a DNA sequence near its promoter.
Probab=22.59 E-value=1.7e+02 Score=19.71 Aligned_cols=27 Identities=15% Similarity=0.095 Sum_probs=21.0
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCHHHHHH
Q psy1333 2 VTQSDTNNVPRAMLMAMFINGLTNEETIA 30 (79)
Q Consensus 2 ~~g~~~~~qiaafL~al~~kGet~~Ei~g 30 (79)
+.+-+|+.|.-.+-. +.+|.|.+||+.
T Consensus 3 ~~~~Lte~qr~VL~L--r~~GlTq~EIAe 29 (137)
T TIGR00721 3 KKTFLTERQIKVLEL--REKGLSQKEIAK 29 (137)
T ss_pred ccCCCCHHHHHHHHH--HHcCCCHHHHHH
Confidence 456688888876654 689999999984
No 114
>PF09228 Prok-TraM: Prokaryotic Transcriptional repressor TraM; InterPro: IPR015309 Members of this family of transcriptional repressors adopt a T-shaped structure, with a core composed of two antiparallel alpha-helices. These proteins can be divided into two parts, a globular head and an elongated tail, and they negatively regulate conjugation and the expression of tra genes by antagonising traR/AAI-dependent activation []. ; GO: 0045892 negative regulation of transcription, DNA-dependent; PDB: 2Q0O_D 2HJD_D 1UPG_A 1US6_B 1RFY_B.
Probab=22.58 E-value=95 Score=20.21 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=16.9
Q ss_pred hcCCCHHHHHHHH-HHHHhhCC
Q psy1333 20 INGLTNEETIALT-KSMVDSGE 40 (79)
Q Consensus 20 ~kGet~~Ei~g~~-~am~~~~~ 40 (79)
..|++..||..+| .|.|+|-.
T Consensus 21 ~~~l~~seLE~Ltv~AIRehR~ 42 (102)
T PF09228_consen 21 FSGLPKSELETLTVSAIREHRR 42 (102)
T ss_dssp CTTS-HHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHH
Confidence 6899999999999 88888743
No 115
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=22.58 E-value=53 Score=23.14 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=19.3
Q ss_pred eeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 53 KHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 53 ~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
+++=||+|+ -+++-.|-.+|..|.+|
T Consensus 7 v~~KGGVGKTT~~~nLA~~la~~G~kV 33 (270)
T PRK13185 7 VYGKGGIGKSTTSSNLSAAFAKLGKKV 33 (270)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 357899998 56666677778888765
No 116
>KOG3022|consensus
Probab=22.50 E-value=54 Score=25.21 Aligned_cols=29 Identities=38% Similarity=0.526 Sum_probs=23.9
Q ss_pred ceeeeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 50 VVDKHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 50 ~vD~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
++=.-|-||+|+ -+|+-.|..+|+.|.+|
T Consensus 50 I~VlSGKGGVGKSTvt~nla~~La~~g~~v 79 (300)
T KOG3022|consen 50 ILVLSGKGGVGKSTVTVNLALALASEGKKV 79 (300)
T ss_pred EEEEeCCCCCchhHHHHHHHHHHhcCCCcE
Confidence 344689999999 68888999999988776
No 117
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=22.19 E-value=1.3e+02 Score=20.78 Aligned_cols=16 Identities=25% Similarity=0.048 Sum_probs=7.1
Q ss_pred CHHHHHHHHHHHHhhC
Q psy1333 24 TNEETIALTKSMVDSG 39 (79)
Q Consensus 24 t~~Ei~g~~~am~~~~ 39 (79)
|...+.++.+.+.++.
T Consensus 83 t~~Ql~AA~~Yl~~~~ 98 (164)
T PF04558_consen 83 TNLQLDAALKYLKSNP 98 (164)
T ss_dssp SHHHHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4444444444444443
No 118
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=22.05 E-value=49 Score=23.42 Aligned_cols=49 Identities=12% Similarity=0.064 Sum_probs=29.2
Q ss_pred HHHHHHHhhCCccCC--CC-CCC-ceeeeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 30 ALTKSMVDSGETLSW--GP-EGI-VVDKHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 30 g~~~am~~~~~~~~~--~~-~~~-~vD~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
.+++++|.-...+.+ .+ ... +.=+.+.||.|+ -++.-.|..+|..|-+|
T Consensus 82 ~~~e~~~~l~~~l~~~~~~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~V 135 (274)
T TIGR03029 82 PQVEALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKT 135 (274)
T ss_pred HHHHHHHHHHHHhhhhccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 356666654444432 11 122 333567788887 56666777788888776
No 119
>PF11106 YjbE: Exopolysaccharide production protein YjbE
Probab=22.02 E-value=43 Score=20.98 Aligned_cols=9 Identities=33% Similarity=0.667 Sum_probs=6.3
Q ss_pred CCCCCCcch
Q psy1333 57 GGVGDKVSI 65 (79)
Q Consensus 57 GGdg~niSt 65 (79)
||||.|..|
T Consensus 63 GgdGsnTgT 71 (80)
T PF11106_consen 63 GGDGSNTGT 71 (80)
T ss_pred CCCCCCCCc
Confidence 688987443
No 120
>PRK10037 cell division protein; Provisional
Probab=21.88 E-value=40 Score=23.67 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=18.3
Q ss_pred ccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 55 STGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 55 gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
.=||.|+ .++.-.|-.+|..|-+|
T Consensus 9 ~KGGvGKTT~a~nLA~~La~~G~rV 33 (250)
T PRK10037 9 VRGGVGTTSITAALAWSLQMLGENV 33 (250)
T ss_pred CCCCccHHHHHHHHHHHHHhcCCcE
Confidence 4588898 56777777888888776
No 121
>PF03445 DUF294: Putative nucleotidyltransferase DUF294; InterPro: IPR005105 This domain is found associated with an N-terminal cyclic nucleotide-binding domain (IPR000595 from INTERPRO) and two CBS domains (IPR000644 from INTERPRO). This domain, normally represents the C-terminal region, is uncharacterised; however, it seems to be similar to the nucleotidyltransferase domain (IPR002934 from INTERPRO), conserving the DXD motif, which strongly suggests that proteins containing this domain are also nucleotidyltransferases.; GO: 0008773 [protein-PII] uridylyltransferase activity
Probab=21.77 E-value=2e+02 Score=18.73 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy1333 10 VPRAMLMAMFINGLTNEETIALTKSMVDS 38 (79)
Q Consensus 10 qiaafL~al~~kGet~~Ei~g~~~am~~~ 38 (79)
|+..++..+..+|.++.+|..+...+.++
T Consensus 2 ~~~~l~~~l~~~g~~~~~i~~~~s~~~d~ 30 (138)
T PF03445_consen 2 RIRELVAALFRRGASVRQIARILSELNDA 30 (138)
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 56778888999999999988777666543
No 122
>KOG2410|consensus
Probab=21.55 E-value=74 Score=26.53 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHhhCCccCCCCC-CCceeee
Q psy1333 24 TNEETIALTKSMVDSGETLSWGPE-GIVVDKH 54 (79)
Q Consensus 24 t~~Ei~g~~~am~~~~~~~~~~~~-~~~vD~~ 54 (79)
.+.||.|+.+|.+.++ +++|.+. .+.++-|
T Consensus 145 VPGEi~Gl~~A~k~~G-~lpW~~L~~P~i~La 175 (579)
T KOG2410|consen 145 VPGELAGLYEAHQKYG-RLPWKQLFQPTIKLA 175 (579)
T ss_pred ChHHHHHHHHHHHHhC-CCCHHHhhhhHHHHh
Confidence 5899999999999999 9999863 3444444
No 123
>PF14769 CLAMP: Flagellar C1a complex subunit C1a-32
Probab=21.49 E-value=2.1e+02 Score=17.63 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=29.7
Q ss_pred CCCCChHHHHHHHHHHH-------hcCCCHHHH-HHHHHHHHhhCCc
Q psy1333 3 TQSDTNNVPRAMLMAMF-------INGLTNEET-IALTKSMVDSGET 41 (79)
Q Consensus 3 ~g~~~~~qiaafL~al~-------~kGet~~Ei-~g~~~am~~~~~~ 41 (79)
+...|..|+++|+.-+. .++.+.+|. .-|-+.|+++++.
T Consensus 9 ~~~fs~~q~s~~~~i~~~ll~~~i~~~~~~~~~~~~fk~~l~~~sv~ 55 (101)
T PF14769_consen 9 EQGFSWEQTSAFLSILKELLEKNIEKGMSLEDSFKYFKELLLRHSVQ 55 (101)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHhccC
Confidence 35689999999986431 288998887 6677788888877
No 124
>PRK02079 pyrroloquinoline quinone biosynthesis protein PqqD; Provisional
Probab=21.39 E-value=2.1e+02 Score=17.67 Aligned_cols=36 Identities=14% Similarity=-0.006 Sum_probs=16.9
Q ss_pred CCCCChHHHHHHHHHHH-hcCCCHHHHHHHHHHHHhh
Q psy1333 3 TQSDTNNVPRAMLMAMF-INGLTNEETIALTKSMVDS 38 (79)
Q Consensus 3 ~g~~~~~qiaafL~al~-~kGet~~Ei~g~~~am~~~ 38 (79)
+|+-|-.+|.+.|..-+ ...+=.+.+..|.+.++++
T Consensus 46 DG~~tv~eIi~~L~~~y~~~~~~~~DV~~fl~~L~~~ 82 (88)
T PRK02079 46 DGKRTVAAIIAELQQQFPDVPGLDEDVLEFLEVARAK 82 (88)
T ss_pred cCCCCHHHHHHHHHHHccchhhHHHHHHHHHHHHHHC
Confidence 45555555555555544 2222234444455544443
No 125
>PRK14029 pyruvate/ketoisovalerate ferredoxin oxidoreductase subunit gamma; Provisional
Probab=21.34 E-value=41 Score=23.00 Aligned_cols=26 Identities=27% Similarity=0.203 Sum_probs=19.3
Q ss_pred eeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 53 KHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 53 ~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
.+|.||+|. -.+.+.+-.+...|..|
T Consensus 6 i~G~GGqGv~tag~iLa~a~~~~G~~v 32 (185)
T PRK14029 6 FHGRGGQGAVTAANILAEAAFLEGKYV 32 (185)
T ss_pred EEEECcchHHHHHHHHHHHHHhcCCeE
Confidence 589999998 46666666666677655
No 126
>PF13767 DUF4168: Domain of unknown function (DUF4168)
Probab=21.18 E-value=1e+02 Score=18.27 Aligned_cols=14 Identities=7% Similarity=0.347 Sum_probs=8.6
Q ss_pred CHHHHHHHHHHHHh
Q psy1333 24 TNEETIALTKSMVD 37 (79)
Q Consensus 24 t~~Ei~g~~~am~~ 37 (79)
|.+||..|++|+++
T Consensus 2 s~~el~~fA~A~~~ 15 (78)
T PF13767_consen 2 SDAELDQFARAVLE 15 (78)
T ss_pred CHHHHHHHHHHHHH
Confidence 45666666666654
No 127
>PF04069 OpuAC: Substrate binding domain of ABC-type glycine betaine transport system; InterPro: IPR007210 This domain is a part of a high affinity multicomponent binding-protein-dependent transport system involved in bacterial osmoregulation. This domain is often fused to the permease component of the transporter complex. It is often found in integral membrane proteins or proteins predicted to be attached to the membrane by a lipid anchor. Glycine betaine is involved in protection from high osmolarity environments for example in Bacillus subtilis []. OpuBC is closely related and involved in choline transport. Choline is necessary for the biosynthesis of glycine betaine []. L-carnitine is important for osmoregulation in Listeria monocytogenes. This domain is found also in proteins binding l-proline (ProX), histidine (HisX) and taurine (TauA).; GO: 0005215 transporter activity, 0005488 binding, 0006810 transport; PDB: 3R6U_A 3TMG_C 3MAM_A 1SW5_C 1SW4_B 1SW1_A 1SW2_A 3O66_A 1R9Q_A 1R9L_A ....
Probab=21.05 E-value=1.4e+02 Score=20.98 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=19.4
Q ss_pred CChHHHHHHHHHHHhcCCCHHHHH
Q psy1333 6 DTNNVPRAMLMAMFINGLTNEETI 29 (79)
Q Consensus 6 ~~~~qiaafL~al~~kGet~~Ei~ 29 (79)
++..++..++..+..+|.+++|.+
T Consensus 228 lt~~~~~~l~~~v~~~~~~~~~vA 251 (257)
T PF04069_consen 228 LTTDDMNELNYQVDVEGKDPEEVA 251 (257)
T ss_dssp --HHHHHHHHHHHHTSTTSHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCHHHHH
Confidence 688899999999988899998876
No 128
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=21.01 E-value=51 Score=23.34 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=21.4
Q ss_pred eeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 53 KHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 53 ~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
+.|=||+|+ -++.-.|..+|..|.+|
T Consensus 5 ~~gKGGVGKTT~a~nLA~~La~~G~~V 31 (275)
T TIGR01287 5 IYGKGGIGKSTTTQNIAAALAEMGKKV 31 (275)
T ss_pred EeCCCcCcHHHHHHHHHHHHHHCCCeE
Confidence 468999999 67888888888888776
No 129
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=20.78 E-value=1.7e+02 Score=21.73 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy1333 11 PRAMLMAMFINGLTNEETIALTKSMVD 37 (79)
Q Consensus 11 iaafL~al~~kGet~~Ei~g~~~am~~ 37 (79)
+++++.++...|.+++|+..+-+.+.+
T Consensus 41 tGgiIA~~la~g~s~~e~~~~y~~~~~ 67 (312)
T cd07212 41 TGGILALALLHGKSLREARRLYLRMKD 67 (312)
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhh
Confidence 578888888889999999888665543
No 130
>TIGR03419 NifU_clost FeS cluster assembly scaffold protein NifU, Clostridium type. NifU and NifS form a pair of iron-sulfur (FeS) cluster biosynthesis proteins much simpler than the ISC and SUF systems. Members of this protein family are a distinct group of NifU-like proteins, found always to a NifS-like protein and restricted to species that lack a SUF system. Typically, NIF systems service a smaller number of FeS-containing proteins than do ISC or SUF. Members of this particular branch typically are found, almost half the time, near the mnmA gene, involved in the carboxymethylaminomethyl modification of U34 in some tRNAs (see GenProp0704). While other NifU proteins are associated with nitrogen fixation, this family is not.
Probab=20.72 E-value=2e+02 Score=18.48 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy1333 8 NNVPRAMLMAMFINGLTNEETIALTK 33 (79)
Q Consensus 8 ~~qiaafL~al~~kGet~~Ei~g~~~ 33 (79)
..|.+|-+++-..+|.|.+|...+..
T Consensus 59 is~Asas~~~e~i~Gk~l~ea~~i~~ 84 (121)
T TIGR03419 59 AAIASSSMATEMIKGKTLEEAWELTN 84 (121)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHhhh
Confidence 46778888899999999999888875
No 131
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=20.58 E-value=1.9e+02 Score=22.12 Aligned_cols=31 Identities=13% Similarity=0.272 Sum_probs=25.3
Q ss_pred ChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy1333 7 TNNVPRAMLMAMFINGLTNEETIALTKSMVDS 38 (79)
Q Consensus 7 ~~~qiaafL~al~~kGet~~Ei~g~~~am~~~ 38 (79)
-|.-+|+|+.++ .++++.+|...++-|.-..
T Consensus 252 GDs~VAGf~~~~-~~~~~~e~~l~~avA~g~a 282 (310)
T COG1105 252 GDSMVAGFLAGL-LKGKSLEEALRFAVACGAA 282 (310)
T ss_pred hHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHH
Confidence 378899999997 6889999998888776544
No 132
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=20.46 E-value=2.2e+02 Score=23.45 Aligned_cols=59 Identities=22% Similarity=0.275 Sum_probs=39.2
Q ss_pred HHHHHHHhcCCC-------HHHHHHHHHHHHhhCCccCCCCCCCceeeeccCCC--CC-------CcchHHHHHHhc
Q psy1333 13 AMLMAMFINGLT-------NEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGV--GD-------KVSIPLVPALAA 73 (79)
Q Consensus 13 afL~al~~kGet-------~~Ei~g~~~am~~~~~~~~~~~~~~~vD~~gTGGd--g~-------niSt~~a~v~Aa 73 (79)
+++.|...+|++ .+++..+.++++..|.++++.+ ..+-+.|.||- .. |.+|..-++.+.
T Consensus 267 ~l~~AaLa~g~s~i~~~l~s~D~~~~~~aL~~lGa~i~~~~--~~~~I~g~~~~~~~~~~~i~~g~sGt~~r~L~~~ 341 (673)
T PRK11861 267 VLLLAALAEGETTVTNLLDSDDTRVMLDALTKLGVKLSRDG--GTCVVGGTRGAFTAKTADLFLGNAGTAVRPLTAA 341 (673)
T ss_pred HHHHHHhcCCCEEEcCCCCCHHHHHHHHHHHHcCCeEEecC--CEEEEEcCCCCcCCCCceEecCCcchHHHHHHHH
Confidence 455555567765 6899999999999999997653 22345676542 11 457777766554
No 133
>PRK11670 antiporter inner membrane protein; Provisional
Probab=20.42 E-value=53 Score=25.11 Aligned_cols=26 Identities=42% Similarity=0.569 Sum_probs=21.8
Q ss_pred eeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 53 KHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 53 ~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
..|-||.|+ -+|.-.|..+|..|.+|
T Consensus 113 ~S~KGGVGKTT~avNLA~aLA~~G~rV 139 (369)
T PRK11670 113 SSGKGGVGKSSTAVNLALALAAEGAKV 139 (369)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHCCCcE
Confidence 478899999 68888888888889876
No 134
>CHL00175 minD septum-site determining protein; Validated
Probab=20.41 E-value=56 Score=23.21 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=20.4
Q ss_pred eeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 53 KHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 53 ~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
..+-||.|+ .++.-.|..+|..|.+|
T Consensus 21 ~s~KGGvGKTt~a~nLA~~La~~g~~v 47 (281)
T CHL00175 21 TSGKGGVGKTTTTANLGMSIARLGYRV 47 (281)
T ss_pred EcCCCCCcHHHHHHHHHHHHHhCCCeE
Confidence 355889998 77777888888888766
No 135
>PRK08561 rps15p 30S ribosomal protein S15P; Reviewed
Probab=20.35 E-value=1.6e+02 Score=20.44 Aligned_cols=25 Identities=4% Similarity=0.012 Sum_probs=20.0
Q ss_pred CCChHHHHHHHHHHHhcCCCHHHHH
Q psy1333 5 SDTNNVPRAMLMAMFINGLTNEETI 29 (79)
Q Consensus 5 ~~~~~qiaafL~al~~kGet~~Ei~ 29 (79)
+++++|+-....=|..||.|+.+|=
T Consensus 27 ~~~~eeve~~I~~lakkG~~pSqIG 51 (151)
T PRK08561 27 DYSPEEIEELVVELAKQGYSPSMIG 51 (151)
T ss_pred cCCHHHHHHHHHHHHHCCCCHHHhh
Confidence 4677888888888888888888874
No 136
>PF11660 DUF3262: Protein of unknown function (DUF3262); InterPro: IPR021676 This entry represents small, hydrophobic proteins that are found occasionally on plasmids such as the Pseudomonas putida TOL (toluene catabolic) plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=20.33 E-value=2.1e+02 Score=17.16 Aligned_cols=25 Identities=24% Similarity=0.117 Sum_probs=18.9
Q ss_pred CChHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy1333 6 DTNNVPRAMLMAMFINGLTNEETIALTK 33 (79)
Q Consensus 6 ~~~~qiaafL~al~~kGet~~Ei~g~~~ 33 (79)
+|.+|.+||=.+ -|.+|.++.-+.-
T Consensus 1 M~~aQ~~AF~aa---sG~~p~~l~~li~ 25 (76)
T PF11660_consen 1 MTAAQLAAFQAA---SGFTPSQLSLLIL 25 (76)
T ss_pred CChHHHHHHHHh---cCCCHHHHHHHHH
Confidence 478899999766 7889988865543
No 137
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=20.33 E-value=89 Score=23.83 Aligned_cols=37 Identities=11% Similarity=0.027 Sum_probs=28.0
Q ss_pred cCCCHHHHHHHHHHHHhhCCccCCCCCCCceeeeccCC
Q psy1333 21 NGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGG 58 (79)
Q Consensus 21 kGet~~Ei~g~~~am~~~~~~~~~~~~~~~vD~~gTGG 58 (79)
+.+|.+||..+.+.+.+.+.+..-.. .+-|++|+--|
T Consensus 138 ~~mt~~eI~~ii~~f~~AA~ra~~aG-fDgVEih~ahG 174 (370)
T cd02929 138 REMDKDDIKRVRRWYVDAALRARDAG-FDIVYVYAAHG 174 (370)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcC-CCEEEEccccc
Confidence 67999999999999998887664332 34688886654
No 138
>PRK11119 proX glycine betaine transporter periplasmic subunit; Provisional
Probab=20.30 E-value=2.6e+02 Score=21.05 Aligned_cols=33 Identities=6% Similarity=-0.097 Sum_probs=25.2
Q ss_pred CCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy1333 5 SDTNNVPRAMLMAMFINGLTNEETIALTKSMVD 37 (79)
Q Consensus 5 ~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~ 37 (79)
.+++.++..++..+..+|.+++|....++..++
T Consensus 281 ~l~~e~~~~l~~~i~~~~~~~~~~~~aA~~Wl~ 313 (331)
T PRK11119 281 KLPLADINAQNLRMHEGESSEADIERHVDGWIK 313 (331)
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 368888989888888888888887656555554
No 139
>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]
Probab=20.10 E-value=2.7e+02 Score=18.79 Aligned_cols=30 Identities=20% Similarity=0.459 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy1333 9 NVPRAMLMAMFINGLTNEETIALTKSMVDS 38 (79)
Q Consensus 9 ~qiaafL~al~~kGet~~Ei~g~~~am~~~ 38 (79)
.|.++=++.-..+|.|.+|..-+++.+.+-
T Consensus 67 s~ASss~~te~v~Gkti~EAl~i~~~~~~m 96 (150)
T COG0822 67 SIASSSMMTELVKGKTLDEALKITEAFTDM 96 (150)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 567777888889999999999888655543
Done!