Query psy1333
Match_columns 79
No_of_seqs 144 out of 1073
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 16:43:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1333.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1333hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dsj_A Pyrimidine-nucleoside ( 100.0 3.2E-30 1.1E-34 197.9 7.5 79 1-79 28-106 (423)
2 4hkm_A Anthranilate phosphorib 100.0 4.3E-30 1.5E-34 191.6 6.6 79 1-79 31-112 (346)
3 2elc_A Trp D, anthranilate pho 100.0 9.1E-30 3.1E-34 189.3 7.1 78 1-79 25-105 (329)
4 1khd_A Anthranilate phosphorib 100.0 1.3E-29 4.4E-34 189.6 7.3 78 1-79 38-118 (345)
5 1brw_A PYNP, protein (pyrimidi 100.0 2.4E-29 8.1E-34 193.3 7.6 79 1-79 28-107 (433)
6 3r88_A Anthranilate phosphorib 100.0 3.7E-29 1.3E-33 189.0 7.4 79 1-79 51-133 (377)
7 2tpt_A Thymidine phosphorylase 100.0 2.9E-29 9.8E-34 193.1 6.6 79 1-79 29-110 (440)
8 1uou_A Thymidine phosphorylase 100.0 5.7E-29 2E-33 193.0 5.9 79 1-79 55-135 (474)
9 1vqu_A Anthranilate phosphorib 99.9 1.1E-28 3.8E-33 186.3 6.7 79 1-79 52-142 (374)
10 3h5q_A PYNP, pyrimidine-nucleo 99.9 3.6E-28 1.2E-32 187.0 6.7 79 1-79 31-110 (436)
11 1o17_A Anthranilate PRT, anthr 99.9 4.2E-28 1.4E-32 181.4 6.4 75 1-79 28-105 (345)
12 2w84_A Peroxisomal membrane pr 76.7 5.5 0.00019 23.5 4.6 31 6-42 33-63 (70)
13 1l6x_B Minimized B-domain of p 76.6 6 0.00021 20.3 4.8 34 6-39 1-34 (34)
14 3ff5_A PEX14P, peroxisomal bio 65.5 10 0.00035 21.2 3.8 22 6-30 28-49 (54)
15 4ex8_A ALNA; alpha/beta/alpha- 49.7 3.5 0.00012 30.7 0.0 52 22-78 79-130 (316)
16 2elc_A Trp D, anthranilate pho 49.0 29 0.001 25.1 4.9 39 4-42 11-49 (329)
17 1g6u_A Domain swapped dimer; d 47.7 30 0.001 18.5 3.6 26 12-37 6-31 (48)
18 2woj_A ATPase GET3; tail-ancho 47.7 5.8 0.0002 28.7 0.9 28 51-78 21-51 (354)
19 1m1e_B ICAT; cell adhesion, cy 46.8 31 0.0011 20.8 4.0 31 8-38 16-48 (81)
20 1o17_A Anthranilate PRT, anthr 46.3 34 0.0012 25.0 4.9 39 4-42 14-52 (345)
21 1vqu_A Anthranilate phosphorib 45.0 36 0.0012 25.2 4.9 40 4-43 38-77 (374)
22 2woo_A ATPase GET3; tail-ancho 44.9 7.3 0.00025 27.6 1.1 26 53-78 24-50 (329)
23 2dsj_A Pyrimidine-nucleoside ( 44.0 39 0.0013 25.7 5.0 40 4-43 14-53 (423)
24 1brw_A PYNP, protein (pyrimidi 43.2 40 0.0014 25.6 5.0 40 4-43 14-53 (433)
25 1uou_A Thymidine phosphorylase 43.2 43 0.0015 25.8 5.2 40 4-43 41-80 (474)
26 2qq4_A Iron-sulfur cluster bio 42.7 40 0.0014 21.4 4.3 29 9-37 67-95 (138)
27 2tpt_A Thymidine phosphorylase 42.4 43 0.0015 25.5 5.1 40 4-43 15-54 (440)
28 3fwy_A Light-independent proto 42.0 9.5 0.00032 27.2 1.3 30 49-78 49-79 (314)
29 1khd_A Anthranilate phosphorib 42.0 35 0.0012 24.9 4.4 39 4-43 24-63 (345)
30 1vkm_A Conserved hypothetical 41.5 5 0.00017 29.6 -0.2 51 22-78 73-123 (297)
31 1xjs_A NIFU-like protein; SR17 41.3 43 0.0015 21.5 4.3 28 9-36 69-96 (147)
32 1ihu_A Arsenical pump-driving 40.5 8.7 0.0003 29.2 1.0 29 50-78 10-39 (589)
33 4hkm_A Anthranilate phosphorib 39.7 52 0.0018 23.8 5.0 39 4-43 17-56 (346)
34 1w4t_A Arylamine N-acetyltrans 39.2 4.3 0.00015 29.2 -0.9 74 5-78 23-111 (299)
35 1su0_B NIFU like protein ISCU; 39.1 55 0.0019 21.3 4.6 30 8-37 67-96 (159)
36 3h5q_A PYNP, pyrimidine-nucleo 39.0 51 0.0017 25.1 5.0 39 4-42 17-55 (436)
37 3r88_A Anthranilate phosphorib 37.5 47 0.0016 24.6 4.5 40 4-43 37-76 (377)
38 2kvc_A Putative uncharacterize 37.2 41 0.0014 21.0 3.6 34 6-40 23-56 (103)
39 2lky_A Uncharacterized protein 36.4 44 0.0015 21.2 3.7 34 6-40 25-58 (112)
40 1dd4_C 50S ribosomal protein L 36.4 40 0.0014 17.5 2.9 20 19-38 9-28 (40)
41 1zav_U 50S ribosomal protein L 36.3 21 0.00071 17.5 1.7 20 19-38 9-28 (30)
42 3gu3_A Methyltransferase; alph 35.9 50 0.0017 22.1 4.2 29 10-38 223-251 (284)
43 3zq6_A Putative arsenical pump 32.7 13 0.00045 26.1 0.8 29 50-78 16-45 (324)
44 3ug7_A Arsenical pump-driving 32.6 14 0.00048 26.4 1.0 29 50-78 28-57 (349)
45 3o66_A Glycine betaine/carniti 31.5 61 0.0021 22.7 4.1 28 2-29 244-271 (282)
46 1zda_A Mini protein A domain, 30.9 17 0.00058 19.1 0.8 34 4-37 4-37 (38)
47 3iqw_A Tail-anchored protein t 30.7 16 0.00054 26.3 1.0 29 50-78 18-47 (334)
48 2m0n_A Putative uncharacterize 29.9 94 0.0032 19.6 4.4 40 4-43 64-103 (112)
49 3r6u_A Choline-binding protein 29.8 67 0.0023 22.4 4.1 28 2-29 245-272 (284)
50 1sw5_A Osmoprotection protein 29.7 70 0.0024 21.5 4.1 27 3-29 238-264 (275)
51 3qwo_C Motavizumab epitope sca 28.9 74 0.0025 17.9 3.4 33 6-38 2-34 (57)
52 1fse_A GERE; helix-turn-helix 28.0 71 0.0024 16.7 3.5 26 4-31 10-35 (74)
53 3fkq_A NTRC-like two-domain pr 27.0 66 0.0023 22.8 3.7 30 49-78 144-175 (373)
54 2v7s_A Probable conserved lipo 26.5 23 0.00078 25.0 1.1 30 6-35 41-70 (215)
55 2h2m_A Protein MURR1, COMM dom 26.0 9.4 0.00032 24.3 -0.9 40 3-42 64-105 (108)
56 3lgb_A DNA primase large subun 26.0 65 0.0022 22.1 3.4 24 9-35 41-64 (194)
57 3end_A Light-independent proto 26.0 19 0.00064 24.6 0.6 30 49-78 42-72 (307)
58 3d7i_A Carboxymuconolactone de 25.9 1E+02 0.0035 17.8 4.3 29 7-35 57-86 (105)
59 3mzy_A RNA polymerase sigma-H 25.7 70 0.0024 18.8 3.2 25 5-31 109-133 (164)
60 3ol3_A Putative uncharacterize 25.6 1.3E+02 0.0043 18.8 5.0 19 21-39 42-60 (107)
61 2j01_J 50S ribosomal protein L 25.6 48 0.0016 21.6 2.5 26 19-44 28-53 (173)
62 2ija_A Arylamine N-acetyltrans 25.4 4.9 0.00017 28.6 -2.5 75 4-78 1-91 (295)
63 4gim_A Pseudouridine-5'-phosph 25.4 24 0.00084 26.3 1.2 53 22-78 98-150 (335)
64 2jml_A DNA binding domain/tran 25.2 73 0.0025 17.7 3.1 28 6-33 45-75 (81)
65 3fxd_A Protein ICMQ; helix bun 25.1 51 0.0017 18.6 2.2 17 2-18 1-17 (57)
66 3j20_Q 30S ribosomal protein S 24.6 77 0.0026 21.2 3.4 31 5-38 27-57 (158)
67 2xzm_O RPS13E; ribosome, trans 23.9 93 0.0032 20.7 3.7 25 5-29 29-53 (153)
68 1k9u_A Polcalcin PHL P 7; poll 23.8 85 0.0029 16.2 4.1 30 3-34 17-46 (78)
69 3bey_A Conserved protein O2701 23.8 1.1E+02 0.0036 17.3 4.3 29 7-35 50-78 (96)
70 1je8_A Nitrate/nitrite respons 23.6 86 0.0029 17.4 3.2 26 4-31 20-45 (82)
71 1fs1_B SKP1, cyclin A/CDK2-ass 23.6 92 0.0031 19.4 3.6 16 15-30 116-131 (141)
72 3kjh_A CO dehydrogenase/acetyl 23.4 14 0.00049 23.7 -0.4 25 54-78 6-31 (254)
73 3u5c_N S27A, YS15, 40S ribosom 23.2 89 0.003 20.8 3.5 25 5-29 27-51 (151)
74 3io3_A DEHA2D07832P; chaperone 22.8 29 0.00098 25.1 1.1 29 50-78 20-51 (348)
75 3omd_A Uncharacterized protein 22.5 1E+02 0.0036 20.1 3.7 34 6-39 73-106 (145)
76 4ab4_A Xenobiotic reductase B; 22.5 36 0.0012 24.9 1.6 37 21-58 141-177 (362)
77 2cwq_A Hypothetical protein TT 22.4 1.2E+02 0.004 18.7 3.9 26 8-33 91-116 (137)
78 3kru_A NADH:flavin oxidoreduct 22.4 25 0.00086 25.5 0.7 37 21-58 131-167 (343)
79 1qjt_A EH1, epidermal growth f 22.0 97 0.0033 17.7 3.2 28 3-33 25-52 (99)
80 3gr7_A NADPH dehydrogenase; fl 21.9 26 0.00088 25.3 0.7 37 21-58 132-168 (340)
81 3l5l_A Xenobiotic reductase A; 21.9 26 0.00089 25.4 0.7 37 21-58 146-182 (363)
82 1tc3_C Protein (TC3 transposas 21.3 76 0.0026 14.7 3.7 26 5-31 5-30 (51)
83 1fi6_A EH domain protein REPS1 21.3 1.1E+02 0.0037 16.9 3.3 26 3-31 23-48 (92)
84 1q80_A SCP, sarcoplasmic calci 21.2 1E+02 0.0035 18.1 3.4 26 3-31 108-133 (174)
85 3don_A Shikimate dehydrogenase 21.2 96 0.0033 21.6 3.6 41 28-76 101-141 (277)
86 3c57_A Two component transcrip 21.1 1.2E+02 0.0042 17.2 3.5 24 5-30 27-50 (95)
87 1x3u_A Transcriptional regulat 20.6 80 0.0028 16.8 2.5 23 6-30 17-39 (79)
88 3hgj_A Chromate reductase; TIM 20.5 39 0.0013 24.3 1.4 37 21-58 140-176 (349)
89 4gxt_A A conserved functionall 20.5 67 0.0023 23.4 2.7 24 20-43 171-194 (385)
90 2bf9_A Pancreatic hormone; tur 20.5 92 0.0031 16.0 2.5 16 4-19 10-25 (36)
91 2bsz_A Arylamine N-acetyltrans 20.4 4.8 0.00016 28.5 -3.4 74 5-78 3-91 (278)
92 2af7_A Gamma-carboxymuconolact 20.3 1.5E+02 0.0051 17.7 4.9 29 7-35 69-97 (125)
93 1eh2_A EPS15; calcium binding, 20.1 1.3E+02 0.0043 17.7 3.5 26 3-31 28-53 (106)
No 1
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.96 E-value=3.2e-30 Score=197.89 Aligned_cols=79 Identities=43% Similarity=0.549 Sum_probs=73.7
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccCCCCCCCceeeeccCCCCCCcchHHHHHHhcCCCCCC
Q psy1333 1 MVTQSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGVGDKVSIPLVPALAACGLKPS 79 (79)
Q Consensus 1 ~~~g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~~~~~~~~vD~~gTGGdg~niSt~~a~v~Aa~Gv~Va 79 (79)
|++|++||+|++|||||+++||||.+||++|+++||+++.+++|+....++|+|||||||+||||+++|++|+||+||+
T Consensus 28 i~~G~~~d~QiaAfL~Al~~kGet~eEiag~a~aM~~~~~~l~~~~~~~~vD~~gTGGdG~niSt~~a~vvAa~Gv~Va 106 (423)
T 2dsj_A 28 YLRDEVPDYQVSAWLMAAFLRGLDPEETLWLTETMARSGKVLDLSGLPHPVDKHSSGGVGDKVSLVVGPILAASGCTFA 106 (423)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSBCCCCTTSSSBEEEEEESSSCCSTHHHHHHHHHTTTCBEE
T ss_pred HHcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCccccCCceeEecCCCCCccHHHHHHHHHHhCCCcEE
Confidence 5789999999999999999999999999999999999999999874212899999999999999999999999999985
No 2
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV}
Probab=99.96 E-value=4.3e-30 Score=191.63 Aligned_cols=79 Identities=20% Similarity=0.187 Sum_probs=69.3
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccCCCCCCCceeeeccCCCCC---CcchHHHHHHhcCCCC
Q psy1333 1 MVTQSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGVGD---KVSIPLVPALAACGLK 77 (79)
Q Consensus 1 ~~~g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~~~~~~~~vD~~gTGGdg~---niSt~~a~v~Aa~Gv~ 77 (79)
|++|+++|+|++|||+|+|+||||++||++|+++||+++.++++++..++||+|||||||+ ||||+++|++|++|+|
T Consensus 31 il~G~~~d~QiaAfL~alr~kget~eEi~g~~~am~~~~~~v~~~~~~~~vD~~gTGGdg~~t~niSt~~a~v~Aa~G~~ 110 (346)
T 4hkm_A 31 IMRGEVSDAMVSAILTGLRVKKETIGEIAGAATVMREFSRRVEVTDRRHMVDIVGTGGDGSHTFNISTCAMFVAAAGGAK 110 (346)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSCCCCCSCCTTEEEEECC------CCCHHHHHHHHHHHTTCE
T ss_pred HHCCCCCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCCCCCCccceeecCCCCCCccccCcHHHHHHHHHhcCCC
Confidence 5799999999999999999999999999999999999999999865346899999999988 7999999999999999
Q ss_pred CC
Q psy1333 78 PS 79 (79)
Q Consensus 78 Va 79 (79)
|+
T Consensus 111 V~ 112 (346)
T 4hkm_A 111 VA 112 (346)
T ss_dssp EE
T ss_pred ee
Confidence 85
No 3
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA, national project O structural and functional analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A
Probab=99.96 E-value=9.1e-30 Score=189.30 Aligned_cols=78 Identities=21% Similarity=0.263 Sum_probs=73.2
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccCCCCCCCceeeeccCCCCC---CcchHHHHHHhcCCCC
Q psy1333 1 MVTQSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGVGD---KVSIPLVPALAACGLK 77 (79)
Q Consensus 1 ~~~g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~~~~~~~~vD~~gTGGdg~---niSt~~a~v~Aa~Gv~ 77 (79)
|++|+++|+|++|||+++|+||||++||++|+++||+++.++++++ .++||+|||||||+ ||||+++|++|++|+|
T Consensus 25 i~~g~~~~~QiaAfL~alr~kget~~Eiag~~~am~~~~~~~~~~~-~~~vD~~gTGGdg~~tfNiSt~~a~v~Aa~Gv~ 103 (329)
T 2elc_A 25 LMAGEVSPVRAAGLLVALSLRGERPHEIAAMARAMREAARPLRVHR-RPLLDIVGTGGDGKGLMNLSTLAALVAAAGGVA 103 (329)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSCCCCCCC-SSEEEEEECCCCSSCCCCCHHHHHHHHHHTTCE
T ss_pred HHcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCCCC-CCeeEEcCCCCCCCCccccHHHHHHHHHhCCCC
Confidence 5789999999999999999999999999999999999999998863 35899999999988 7899999999999999
Q ss_pred CC
Q psy1333 78 PS 79 (79)
Q Consensus 78 Va 79 (79)
|+
T Consensus 104 V~ 105 (329)
T 2elc_A 104 VA 105 (329)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 4
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide binding fold; 1.86A {Pectobacterium carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A
Probab=99.96 E-value=1.3e-29 Score=189.58 Aligned_cols=78 Identities=22% Similarity=0.268 Sum_probs=73.1
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccCCCCCCCceeeeccCCCCC---CcchHHHHHHhcCCCC
Q psy1333 1 MVTQSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGVGD---KVSIPLVPALAACGLK 77 (79)
Q Consensus 1 ~~~g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~~~~~~~~vD~~gTGGdg~---niSt~~a~v~Aa~Gv~ 77 (79)
|++|+++|+|++|||+|+|+||||++||++|+++||+++.+++++. .+++|+|||||||+ ||||+++|++|++|+|
T Consensus 38 il~g~~~~~QiaAfL~alr~kget~eEiag~~~am~~~~~~~~~~~-~~~vD~~gTGGdg~~tfNiSt~~A~v~Aa~Gv~ 116 (345)
T 1khd_A 38 IVRGELEDSQLAAALISMKMRGERPEEIAGAASALLADAQPFPRPD-YDFADIVGTGGDGTNSINISTASAFVAASCGAK 116 (345)
T ss_dssp HTTTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSCCCCCCS-SCCEEEEECCCCSSCBCCCHHHHHHHHHHHTCC
T ss_pred HHcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCCCC-CCeeeecCCCCCCCCccchHHHHHHHHHhCCCc
Confidence 5899999999999999999999999999999999999999998863 35899999999998 7899999999999999
Q ss_pred CC
Q psy1333 78 PS 79 (79)
Q Consensus 78 Va 79 (79)
|+
T Consensus 117 Va 118 (345)
T 1khd_A 117 VA 118 (345)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 5
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=99.96 E-value=2.4e-29 Score=193.28 Aligned_cols=79 Identities=42% Similarity=0.612 Sum_probs=73.9
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccCCCCC-CCceeeeccCCCCCCcchHHHHHHhcCCCCCC
Q psy1333 1 MVTQSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSWGPE-GIVVDKHSTGGVGDKVSIPLVPALAACGLKPS 79 (79)
Q Consensus 1 ~~~g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~~~~~-~~~vD~~gTGGdg~niSt~~a~v~Aa~Gv~Va 79 (79)
|++|+++|+|++|||||+|+||||.+||++|+++||+++.+++|++. .+++|+|||||||+||||+++|++|++|+||+
T Consensus 28 i~~G~~sd~QiaAfL~Alr~kGet~eEiag~a~AM~~~~~~v~~~~~~~~~vD~~gTGGdG~~iSt~~A~vvAa~Gv~Va 107 (433)
T 1brw_A 28 YTNGDIPDYQMSALAMAIYFRGMTEEETAALTMAMVQSGEMLDLSSIRGVKVDKHSTGGVGDTTTLVLGPLVASVGVPVA 107 (433)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSCCCCCTTSCSCCEEEEECCCSSCCHHHHHHHHHHTTTCCEE
T ss_pred HHcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCcccccCCceeeCCCCCCCcchHHHHHHHHHhCCCcEE
Confidence 57899999999999999999999999999999999999999998642 25899999999999999999999999999985
No 6
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=99.95 E-value=3.7e-29 Score=189.01 Aligned_cols=79 Identities=24% Similarity=0.219 Sum_probs=73.6
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccCCCCC-CCceeeeccCCCCC---CcchHHHHHHhcCCC
Q psy1333 1 MVTQSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSWGPE-GIVVDKHSTGGVGD---KVSIPLVPALAACGL 76 (79)
Q Consensus 1 ~~~g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~~~~~-~~~vD~~gTGGdg~---niSt~~a~v~Aa~Gv 76 (79)
||+|+++|+|++|||+|+|+||||++||++|+++||+++.+++++.. .+++|+|||||||+ ||||+++||+|++|+
T Consensus 51 i~~G~~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~~~v~~~~~~~~~vD~~gTGGdg~~T~niSt~~A~v~Aa~Gv 130 (377)
T 3r88_A 51 IMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAHPLPADTVPDDAVDVVGTGGDGVNTVNLSTMAAIVVAAAGV 130 (377)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSCCCCTTCSCTTCEEEEECCCCSCCBCCHHHHHHHHHHHTTC
T ss_pred HHCCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhCCcCCCccCCCCCeEEeCCCCCCcCccccHHHHHHHHHhcCC
Confidence 57999999999999999999999999999999999999999987642 46899999999998 799999999999999
Q ss_pred CCC
Q psy1333 77 KPS 79 (79)
Q Consensus 77 ~Va 79 (79)
||+
T Consensus 131 ~Va 133 (377)
T 3r88_A 131 PVV 133 (377)
T ss_dssp CEE
T ss_pred eEE
Confidence 985
No 7
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=99.95 E-value=2.9e-29 Score=193.13 Aligned_cols=79 Identities=41% Similarity=0.619 Sum_probs=73.9
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccCCCC--C-CCceeeeccCCCCCCcchHHHHHHhcCCCC
Q psy1333 1 MVTQSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSWGP--E-GIVVDKHSTGGVGDKVSIPLVPALAACGLK 77 (79)
Q Consensus 1 ~~~g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~~~~--~-~~~vD~~gTGGdg~niSt~~a~v~Aa~Gv~ 77 (79)
|++|++||+|++|||||+|+||||.+||++|+++||+++.+++|++ . ++++|+|||||||+||||+++|++|++|+|
T Consensus 29 i~~G~~sd~QiaAfL~Alr~kGet~eEiag~~~Am~~~~~~~~~~~~~~~~~~vD~~gTGGdG~~iSt~~A~vvAa~Gv~ 108 (440)
T 2tpt_A 29 IRDNTISEGQIAALAMTIFFHDMTMPERVSLTMAMRDSGTVLDWKSLHLNGPIVDKHSTGGVGDVTSLMLGPMVAACGGY 108 (440)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSBCCCCTTTTCSSCBEEEEECCCSSCCHHHHHHHHHHHTTCB
T ss_pred HHcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcCCCcccccCCCeeeeCCCCCCCccHHHHHHHHHHhCCCc
Confidence 4789999999999999999999999999999999999999999974 1 258999999999999999999999999999
Q ss_pred CC
Q psy1333 78 PS 79 (79)
Q Consensus 78 Va 79 (79)
|+
T Consensus 109 Va 110 (440)
T 2tpt_A 109 IP 110 (440)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 8
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=99.95 E-value=5.7e-29 Score=193.04 Aligned_cols=79 Identities=51% Similarity=0.739 Sum_probs=73.6
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccCCCCC--CCceeeeccCCCCCCcchHHHHHHhcCCCCC
Q psy1333 1 MVTQSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSWGPE--GIVVDKHSTGGVGDKVSIPLVPALAACGLKP 78 (79)
Q Consensus 1 ~~~g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~~~~~--~~~vD~~gTGGdg~niSt~~a~v~Aa~Gv~V 78 (79)
|++|+++|+|++|||||+|+||||.+||++|+++||+++.+++|+.. ++++|+|||||||+||||+++||+|++|++|
T Consensus 55 i~~G~~sd~QiaAfLmAlr~kGeT~eEiag~a~AMr~~~~~v~~~~~~~~~~vD~~gTGGdG~~iSt~~A~vvAa~Gv~V 134 (474)
T 1uou_A 55 VVNGSAQGAQIGAMLMAIRLRGMDLEETSVLTQALAQSGQQLEWPEAWRQQLVDKHSTGGVGDKVSLVLAPALAACGCKV 134 (474)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTSCCCCCCGGGGGGBEEEEESCCTTCCHHHHHHHHHHTTTCBE
T ss_pred HHcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcCCcccccCCCeeEeCCCCCCCceeHHHHHHHHHhCCCCE
Confidence 47899999999999999999999999999999999999999998631 2589999999999999999999999999998
Q ss_pred C
Q psy1333 79 S 79 (79)
Q Consensus 79 a 79 (79)
+
T Consensus 135 a 135 (474)
T 1uou_A 135 P 135 (474)
T ss_dssp E
T ss_pred E
Confidence 5
No 9
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI; 1.85A {Nostoc SP}
Probab=99.95 E-value=1.1e-28 Score=186.27 Aligned_cols=79 Identities=18% Similarity=0.279 Sum_probs=67.2
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCcc--------CCCC-CCCceeeeccCCCCC---CcchHHH
Q psy1333 1 MVTQSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETL--------SWGP-EGIVVDKHSTGGVGD---KVSIPLV 68 (79)
Q Consensus 1 ~~~g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~--------~~~~-~~~~vD~~gTGGdg~---niSt~~a 68 (79)
|++|+++|+|++|||+|+|+||||++||++|+++||+++.++ ++++ ..+++|+|||||||+ ||||+++
T Consensus 52 il~G~~~~~QiaAfL~Alr~kGet~eEiag~~~am~~~~~~~~~~~~~~~~~~~~~~~~vD~~gTGGdg~~tfNiSt~~A 131 (374)
T 1vqu_A 52 WLSEAVPPELSGAILTALNFKGVSADELTGMAEVLQSQSKMGTGENYSQLPITNSPFSIIDTCGTGGDGSSTFNISTAVA 131 (374)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCC-----------CCSSSCCEEEEECC---CCBCCHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCccccccccccCccccCCCeeEEeCCCCCCCCccchHHHHH
Confidence 578999999999999999999999999999999999999998 6652 025899999999988 7899999
Q ss_pred HHHhcCCCCCC
Q psy1333 69 PALAACGLKPS 79 (79)
Q Consensus 69 ~v~Aa~Gv~Va 79 (79)
||+|++|+||+
T Consensus 132 ~v~Aa~Gv~Va 142 (374)
T 1vqu_A 132 FVAAAYGVPVA 142 (374)
T ss_dssp HHHHHTTCCEE
T ss_pred HHHHhCCCCEE
Confidence 99999999985
No 10
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=99.95 E-value=3.6e-28 Score=187.04 Aligned_cols=79 Identities=34% Similarity=0.588 Sum_probs=73.9
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccCCCCC-CCceeeeccCCCCCCcchHHHHHHhcCCCCCC
Q psy1333 1 MVTQSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSWGPE-GIVVDKHSTGGVGDKVSIPLVPALAACGLKPS 79 (79)
Q Consensus 1 ~~~g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~~~~~-~~~vD~~gTGGdg~niSt~~a~v~Aa~Gv~Va 79 (79)
|++|+++|+|++||||++|+||||++||++|+++||+++.+++|+.. ++++|+|||||||+|+||+++|++|++|+||+
T Consensus 31 i~~G~~sd~QiaAfL~Alr~kGet~eEiag~~~Am~~~~~~~~~~~~~~~~vD~~gTGGdG~~tSt~~A~vvAa~Gv~Va 110 (436)
T 3h5q_A 31 YVKGDIPDYQASSLAMAIYFQDMNDDERVALTMAMVNSGDMIDLSDIKGVKVDKHSTGGVGDTTTLVLAPLVAAVDVPVA 110 (436)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTSCCCCCTTSCSCCEEEEECCCTTCCHHHHHHHHHHHTTCCEE
T ss_pred HHcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcCCccccCCCceeecCCCCCCCChHHHHHHHHHhCCCCEE
Confidence 46899999999999999999999999999999999999999998731 36899999999999999999999999999985
No 11
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A 1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A*
Probab=99.94 E-value=4.2e-28 Score=181.40 Aligned_cols=75 Identities=19% Similarity=0.248 Sum_probs=66.8
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccCCCCCCCceeeeccCCCCC---CcchHHHHHHhcCCCC
Q psy1333 1 MVTQSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGVGD---KVSIPLVPALAACGLK 77 (79)
Q Consensus 1 ~~~g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~~~~~~~~vD~~gTGGdg~---niSt~~a~v~Aa~Gv~ 77 (79)
|++|+++|+|++|||+|+|+||||++||++|+++||+++.+++++ +++|+|||||||+ ||||+++|++|++ +|
T Consensus 28 i~~g~~~~~QiaAfL~alr~kget~eEiag~~~am~~~~~~~~~~---~~vD~~gTGGdg~~tfNiSt~~A~v~Aa~-v~ 103 (345)
T 1o17_A 28 IIRGEVPEILVSAILVALRMKGESKNEIVGFARAMRELAIKIDVP---NAIDTAGTGGDGLGTVNVSTASAILLSLV-NP 103 (345)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSCCCCCT---TCEECCC----CCCBCCHHHHHHHHHTTT-SC
T ss_pred HHcCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCCC---CceeeCCCCCCCCCccchHHHHHHHHHHc-CC
Confidence 578999999999999999999999999999999999999999875 4799999999998 7899999999999 99
Q ss_pred CC
Q psy1333 78 PS 79 (79)
Q Consensus 78 Va 79 (79)
|+
T Consensus 104 Va 105 (345)
T 1o17_A 104 VA 105 (345)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 12
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=76.73 E-value=5.5 Score=23.52 Aligned_cols=31 Identities=32% Similarity=0.339 Sum_probs=22.5
Q ss_pred CChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCcc
Q psy1333 6 DTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETL 42 (79)
Q Consensus 6 ~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~ 42 (79)
.+-.+--+|| +.||.|.+||. .+|++.+...
T Consensus 33 sp~~~K~~FL---~sKGLt~eEI~---~Al~ra~~~~ 63 (70)
T 2w84_A 33 SPLATRRAFL---KKKGLTDEEID---MAFQQSGTAA 63 (70)
T ss_dssp SCHHHHHHHH---HHTTCCHHHHH---HHHHHHTCCC
T ss_pred CCHHHHHHHH---HHcCCCHHHHH---HHHHHccCCC
Confidence 4556777886 88999999997 5566655443
No 13
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=76.60 E-value=6 Score=20.34 Aligned_cols=34 Identities=24% Similarity=0.152 Sum_probs=30.0
Q ss_pred CChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhC
Q psy1333 6 DTNNVPRAMLMAMFINGLTNEETIALTKSMVDSG 39 (79)
Q Consensus 6 ~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~ 39 (79)
++..|.-||--.|.+.+.|.++--++.+.+++.+
T Consensus 1 ~~~~qQnaFYevLh~~nLtEeQrn~yI~slkdd~ 34 (34)
T 1l6x_B 1 FNMQCQRRFYEALHDPNLNEEQRNAKIKSIRDDC 34 (34)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHcCCCCCHHHHHhHHHHHhccC
Confidence 3568899999999999999999999999998753
No 14
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=65.50 E-value=10 Score=21.19 Aligned_cols=22 Identities=36% Similarity=0.326 Sum_probs=17.7
Q ss_pred CChHHHHHHHHHHHhcCCCHHHHHH
Q psy1333 6 DTNNVPRAMLMAMFINGLTNEETIA 30 (79)
Q Consensus 6 ~~~~qiaafL~al~~kGet~~Ei~g 30 (79)
.+-.+--+|| ..||.|.+||..
T Consensus 28 sp~~~K~~FL---~sKGLt~~EI~~ 49 (54)
T 3ff5_A 28 SPLATRRAFL---KKKGLTDEEIDL 49 (54)
T ss_dssp SCHHHHHHHH---HHTTCCHHHHHH
T ss_pred CCHHHHHHHH---HHcCCCHHHHHH
Confidence 4566777886 889999999974
No 15
>4ex8_A ALNA; alpha/beta/alpha-domain, C-glycosynthase, divalent metal ION ligase; 2.10A {Streptomyces SP} PDB: 4ex9_A*
Probab=49.73 E-value=3.5 Score=30.68 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHHhhCCccCCCCCCCceeeeccCCCCCCcchHHHHHHhcCCCCC
Q psy1333 22 GLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGVGDKVSIPLVPALAACGLKP 78 (79)
Q Consensus 22 Get~~Ei~g~~~am~~~~~~~~~~~~~~~vD~~gTGGdg~niSt~~a~v~Aa~Gv~V 78 (79)
|++.+||..+++ .+...|+ +. +++-..+..|.+|.-+-....+++..+|++|
T Consensus 79 GL~~~eLe~la~--~~~~~K~--Sr-RDl~~~~a~g~~GaTTVaaTm~lA~~AGI~V 130 (316)
T 4ex8_A 79 GLTDSLIERFAS--TKGIPKI--SA-RDIGGALAGGGLGATTVAGTIVIAERAGIQV 130 (316)
T ss_dssp SCCHHHHHHHHH--CTTCCEE--CG-GGHHHHHHHCSCBEECHHHHHHHHHHHTCCE
T ss_pred cCCHHHHHHHhc--CCCcccc--ch-hhHHHHHhCCCCccccHHHHHHHHHHCCCcE
Confidence 789999999987 2333343 32 2344457888887754445566667778876
No 16
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA, national project O structural and functional analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A
Probab=49.01 E-value=29 Score=25.11 Aligned_cols=39 Identities=10% Similarity=0.104 Sum_probs=30.2
Q ss_pred CCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCcc
Q psy1333 4 QSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETL 42 (79)
Q Consensus 4 g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~ 42 (79)
.++|.+|+..++-.+.....++.++.+|--+||-++...
T Consensus 11 ~~Lt~eEa~~~~~~i~~g~~~~~QiaAfL~alr~kget~ 49 (329)
T 2elc_A 11 EVLEEEEAYEVMRALMAGEVSPVRAAGLLVALSLRGERP 49 (329)
T ss_dssp CCCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCCH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCH
Confidence 467888887777766544459999999999999988764
No 17
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=47.75 E-value=30 Score=18.53 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=20.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy1333 12 RAMLMAMFINGLTNEETIALTKSMVD 37 (79)
Q Consensus 12 aafL~al~~kGet~~Ei~g~~~am~~ 37 (79)
-+=|-+++..|-+++|++.+-..+..
T Consensus 6 kselqalkkegfspeelaaleselqa 31 (48)
T 1g6u_A 6 KSELQALKKEGFSPEELAALESELQA 31 (48)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34467889999999999988766543
No 18
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=47.74 E-value=5.8 Score=28.65 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=23.9
Q ss_pred eeeeccCCCCC-CcchHHHHHHh--cCCCCC
Q psy1333 51 VDKHSTGGVGD-KVSIPLVPALA--ACGLKP 78 (79)
Q Consensus 51 vD~~gTGGdg~-niSt~~a~v~A--a~Gv~V 78 (79)
+=+.|-||+|+ ++|...|..+| ..|.+|
T Consensus 21 ~v~sgKGGvGKTTvaanLA~~lA~~~~G~rV 51 (354)
T 2woj_A 21 IFVGGKGGVGKTTSSCSIAIQMALSQPNKQF 51 (354)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTTSCE
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHhcCCCeE
Confidence 33678999999 89999999999 889876
No 19
>1m1e_B ICAT; cell adhesion, cytoskeleton, armadillo repeats, transciption factor, structural protein; 2.10A {Homo sapiens} SCOP: a.161.1.1 PDB: 1luj_B 1t08_B
Probab=46.77 E-value=31 Score=20.77 Aligned_cols=31 Identities=16% Similarity=-0.044 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhh
Q psy1333 8 NNVPRAMLMAMFINGL--TNEETIALTKSMVDS 38 (79)
Q Consensus 8 ~~qiaafL~al~~kGe--t~~Ei~g~~~am~~~ 38 (79)
..|-.-+|+||+.-|+ |++|..-+..-+...
T Consensus 16 ~~QkvEILtALkKLGe~Ls~eE~~FL~~~~~~~ 48 (81)
T 1m1e_B 16 IQQKVRVLLMLRKMGSNLTASEEEFLRTYAGVV 48 (81)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHhhhH
Confidence 4577889999999998 899998887766544
No 20
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A 1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A*
Probab=46.32 E-value=34 Score=24.98 Aligned_cols=39 Identities=13% Similarity=0.054 Sum_probs=30.3
Q ss_pred CCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCcc
Q psy1333 4 QSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETL 42 (79)
Q Consensus 4 g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~ 42 (79)
.++|.+|+..++-.+.....++.++.+|--+||-++...
T Consensus 14 ~~Lt~eEa~~~~~~i~~g~~~~~QiaAfL~alr~kget~ 52 (345)
T 1o17_A 14 SDLEINEAEELAKAIIRGEVPEILVSAILVALRMKGESK 52 (345)
T ss_dssp CCCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCCH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCH
Confidence 467888887777666444459999999999999998764
No 21
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI; 1.85A {Nostoc SP}
Probab=44.97 E-value=36 Score=25.16 Aligned_cols=40 Identities=10% Similarity=0.103 Sum_probs=30.3
Q ss_pred CCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccC
Q psy1333 4 QSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLS 43 (79)
Q Consensus 4 g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~ 43 (79)
.++|.+|+..++-.+.....++.++.+|--+||-++...+
T Consensus 38 ~~Lt~eEa~~~~~~il~G~~~~~QiaAfL~Alr~kGet~e 77 (374)
T 1vqu_A 38 ESLSRSQAAELMQGWLSEAVPPELSGAILTALNFKGVSAD 77 (374)
T ss_dssp CCCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCHH
Confidence 3578888777766664444599999999999999987653
No 22
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=44.88 E-value=7.3 Score=27.60 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.6
Q ss_pred eeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 53 KHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 53 ~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
+.|-||.|+ .+|...|..+|..|.+|
T Consensus 24 ~sgkGGvGKTTva~~LA~~lA~~G~rV 50 (329)
T 2woo_A 24 VGGKGGVGKTTTSCSLAIQMSKVRSSV 50 (329)
T ss_dssp EECSSSSSHHHHHHHHHHHHHTSSSCE
T ss_pred EeCCCCCcHHHHHHHHHHHHHHCCCeE
Confidence 578899999 78888999999999876
No 23
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=44.00 E-value=39 Score=25.66 Aligned_cols=40 Identities=10% Similarity=0.074 Sum_probs=31.8
Q ss_pred CCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccC
Q psy1333 4 QSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLS 43 (79)
Q Consensus 4 g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~ 43 (79)
.++|.+|+..++-.+...-.|+.+|.+|.-+++-++...+
T Consensus 14 ~~Lt~eEa~~~~~~i~~G~~~d~QiaAfL~Al~~kGet~e 53 (423)
T 2dsj_A 14 KKHRREDLEAFLLGYLRDEVPDYQVSAWLMAAFLRGLDPE 53 (423)
T ss_dssp CCCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCHH
Confidence 5688889887777764444599999999999999987753
No 24
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=43.18 E-value=40 Score=25.60 Aligned_cols=40 Identities=13% Similarity=0.028 Sum_probs=31.7
Q ss_pred CCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccC
Q psy1333 4 QSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLS 43 (79)
Q Consensus 4 g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~ 43 (79)
.++|.+|+..++-.+...-.++.++.+|.-++|-++...+
T Consensus 14 ~~Lt~eEa~~~~~~i~~G~~sd~QiaAfL~Alr~kGet~e 53 (433)
T 1brw_A 14 KALTKEEIEWIVRGYTNGDIPDYQMSALAMAIYFRGMTEE 53 (433)
T ss_dssp CCCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCHH
Confidence 5688888887777764444599999999999999987753
No 25
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=43.16 E-value=43 Score=25.82 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=32.6
Q ss_pred CCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccC
Q psy1333 4 QSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLS 43 (79)
Q Consensus 4 g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~ 43 (79)
.++|.+|+..++-.+.....+..++.+|.-++|-++...+
T Consensus 41 ~~Lt~eEa~~~~~~i~~G~~sd~QiaAfLmAlr~kGeT~e 80 (474)
T 1uou_A 41 GRLSEADIRGFVAAVVNGSAQGAQIGAMLMAIRLRGMDLE 80 (474)
T ss_dssp CCCCHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCHH
Confidence 5788889988887775555699999999999999987753
No 26
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=42.72 E-value=40 Score=21.37 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy1333 9 NVPRAMLMAMFINGLTNEETIALTKSMVD 37 (79)
Q Consensus 9 ~qiaafL~al~~kGet~~Ei~g~~~am~~ 37 (79)
.|-+|=++.-..||.|.+|...+...+++
T Consensus 67 s~ASaS~~te~i~Gkt~~ea~~i~~~~~~ 95 (138)
T 2qq4_A 67 STASASLMTEAVKGKKVAEALELSRKFQA 95 (138)
T ss_dssp HHHHHHHHHHHHTTSBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 57788888888999999999999977654
No 27
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=42.44 E-value=43 Score=25.47 Aligned_cols=40 Identities=13% Similarity=0.129 Sum_probs=32.6
Q ss_pred CCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccC
Q psy1333 4 QSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLS 43 (79)
Q Consensus 4 g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~ 43 (79)
.++|.+|+..++-.+.....++.++.+|.-++|-++...+
T Consensus 15 ~~Lt~eEa~~~~~~i~~G~~sd~QiaAfL~Alr~kGet~e 54 (440)
T 2tpt_A 15 HALSDEEIRFFINGIRDNTISEGQIAALAMTIFFHDMTMP 54 (440)
T ss_dssp CCCCHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCHH
Confidence 5688889988887775555699999999999999987753
No 28
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=42.03 E-value=9.5 Score=27.19 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=24.4
Q ss_pred CceeeeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 49 IVVDKHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 49 ~~vD~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
++|=+.|=||+|+ .+|.=.|..+|..|.+|
T Consensus 49 KVIAIaGKGGVGKTTtavNLA~aLA~~GkkV 79 (314)
T 3fwy_A 49 KVFAVYGKGGIGKSTTSSNLSAAFSILGKRV 79 (314)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred eEEEEECCCccCHHHHHHHHHHHHHHCCCeE
Confidence 4677789999999 67777788888899886
No 29
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide binding fold; 1.86A {Pectobacterium carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A
Probab=42.01 E-value=35 Score=24.92 Aligned_cols=39 Identities=28% Similarity=0.319 Sum_probs=29.6
Q ss_pred CCCChHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhCCccC
Q psy1333 4 QSDTNNVPRAMLMAMFING-LTNEETIALTKSMVDSGETLS 43 (79)
Q Consensus 4 g~~~~~qiaafL~al~~kG-et~~Ei~g~~~am~~~~~~~~ 43 (79)
.++|.+|+..++-.+ ++| .++.++.+|--+||-++...+
T Consensus 24 ~~Lt~eEa~~~~~~i-l~g~~~~~QiaAfL~alr~kget~e 63 (345)
T 1khd_A 24 QSMTQEESHQLFAAI-VRGELEDSQLAAALISMKMRGERPE 63 (345)
T ss_dssp CCCCHHHHHHHHHHH-TTTCSCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCCHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHhCCCHH
Confidence 357778877766665 555 499999999999999887653
No 30
>1vkm_A Conserved hypothetical protein TM1464; indigoidine synthase A-like fold, structural genomics, joint for structural genomics, JCSG; HET: MSE UNL; 1.90A {Thermotoga maritima} SCOP: c.138.1.1
Probab=41.47 E-value=5 Score=29.57 Aligned_cols=51 Identities=12% Similarity=0.108 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHhhCCccCCCCCCCceeeeccCCCCCCcchHHHHHHhcCCCCC
Q psy1333 22 GLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGVGDKVSIPLVPALAACGLKP 78 (79)
Q Consensus 22 Get~~Ei~g~~~am~~~~~~~~~~~~~~~vD~~gTGGdg~niSt~~a~v~Aa~Gv~V 78 (79)
|++.+||..++ .+...|++. +++-..+..|.+|.-+-....+++..+|++|
T Consensus 73 GL~~~eLe~la---~~~~~K~Sr---RDl~~~~a~g~~GaTTVaaTm~lA~~AGI~V 123 (297)
T 1vkm_A 73 GMSEEELEAMM---REGADKVGT---REIPIVVAEGKNAATTVSATIFLSRRIGIEV 123 (297)
T ss_dssp SCCHHHHHHHH---HHCCEEECG---GGHHHHHHHTCCEEECHHHHHHHHHHHTCCE
T ss_pred CCCHHHHHHHh---cCCCccccH---hhHHHHHhCCCCchhhHHHHHHHHHHcCCcE
Confidence 68999999998 344445532 2333447788887754445556667778876
No 31
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=41.28 E-value=43 Score=21.51 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy1333 9 NVPRAMLMAMFINGLTNEETIALTKSMV 36 (79)
Q Consensus 9 ~qiaafL~al~~kGet~~Ei~g~~~am~ 36 (79)
.|.+|=+++-..||.|.+|...+...++
T Consensus 69 s~ASaS~mte~v~Gkt~~Ea~~i~~~~~ 96 (147)
T 1xjs_A 69 SMASASMMTQAIKGKDIETALSMSKIFS 96 (147)
T ss_dssp HHHHHHHHHHHHTTSBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5778888888899999999999988654
No 32
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=40.48 E-value=8.7 Score=29.15 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=23.8
Q ss_pred ceeeeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 50 VVDKHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 50 ~vD~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
++=+.|.||.|+ -+|...|..+|..|.+|
T Consensus 10 i~~~sgkGGvGKTT~a~~lA~~lA~~G~rV 39 (589)
T 1ihu_A 10 YLFFTGKGGVGKTSISCATAIRLAEQGKRV 39 (589)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEeCCCcCHHHHHHHHHHHHHHHCCCcE
Confidence 344689999999 78888888889889876
No 33
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV}
Probab=39.68 E-value=52 Score=23.82 Aligned_cols=39 Identities=10% Similarity=0.176 Sum_probs=30.5
Q ss_pred CCCChHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhhCCccC
Q psy1333 4 QSDTNNVPRAMLMAMFING-LTNEETIALTKSMVDSGETLS 43 (79)
Q Consensus 4 g~~~~~qiaafL~al~~kG-et~~Ei~g~~~am~~~~~~~~ 43 (79)
.++|.+|+..++-.+ ++| .++.++.+|--+||-++...+
T Consensus 17 ~~Lt~eEa~~~~~~i-l~G~~~d~QiaAfL~alr~kget~e 56 (346)
T 4hkm_A 17 REIFHDEMVDLMRQI-MRGEVSDAMVSAILTGLRVKKETIG 56 (346)
T ss_dssp CCCCHHHHHHHHHHH-HTTCSCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCCHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHCcCHH
Confidence 467888887776666 555 499999999999999887653
No 34
>1w4t_A Arylamine N-acetyltransferase; 5- aminosalicylic acid, NAT, xenobiotic metabolism, acyltransferase; 1.95A {Pseudomonas aeruginosa} SCOP: d.3.1.5
Probab=39.16 E-value=4.3 Score=29.16 Aligned_cols=74 Identities=18% Similarity=0.084 Sum_probs=47.2
Q ss_pred CCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccCCCCC------C------Cceee---eccCCCCCCcchHHHH
Q psy1333 5 SDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSWGPE------G------IVVDK---HSTGGVGDKVSIPLVP 69 (79)
Q Consensus 5 ~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~~~~~------~------~~vD~---~gTGGdg~niSt~~a~ 69 (79)
.+++.|+.++|.=+-..+....-+..|.+-++.+...+|++.. . .+.|| -+-||...-.....+-
T Consensus 23 ~~~~~~l~~Yl~RIg~~~~~~~~l~~L~~L~~~h~~~IPFENLdv~~g~~i~ld~~~l~~KiV~~~RGGyC~ElN~Lf~~ 102 (299)
T 1w4t_A 23 PLTPEQTHAYLHHIGIDDPGPPSLANLDRLIDAHLRRVAFENLDVLLDRPIEIDADKVFAKVVEGSRGGYCFELNSLFAR 102 (299)
T ss_dssp CCCHHHHHHHHHHHTCSCCCSSCHHHHHHHHHHHHHHSCEECHHHHTTCCCCCSHHHHHHHHTTTTCCBCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHhhcCCCCChhHhcCCCCCCCHHHHHHHHHhcCCCcchHhHHHHHHH
Confidence 4788999999999988776444555666666666555555320 0 11222 3566665556677777
Q ss_pred HHhcCCCCC
Q psy1333 70 ALAACGLKP 78 (79)
Q Consensus 70 v~Aa~Gv~V 78 (79)
++-++|..|
T Consensus 103 ~L~~LGF~V 111 (299)
T 1w4t_A 103 LLLALGYEL 111 (299)
T ss_dssp HHHHTTCEE
T ss_pred HHHHcCCeE
Confidence 777787765
No 35
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=39.06 E-value=55 Score=21.33 Aligned_cols=30 Identities=20% Similarity=0.302 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy1333 8 NNVPRAMLMAMFINGLTNEETIALTKSMVD 37 (79)
Q Consensus 8 ~~qiaafL~al~~kGet~~Ei~g~~~am~~ 37 (79)
-.|.+|=++.-..||.|.+|...+...+++
T Consensus 67 is~ASaS~mte~v~Gkt~~Ea~~i~~~f~~ 96 (159)
T 1su0_B 67 ISTASSSMMTDAVIGKSKEEALALADIFSE 96 (159)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 357788888888999999999999987664
No 36
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=39.05 E-value=51 Score=25.11 Aligned_cols=39 Identities=5% Similarity=-0.033 Sum_probs=31.4
Q ss_pred CCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCcc
Q psy1333 4 QSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETL 42 (79)
Q Consensus 4 g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~ 42 (79)
.++|.+|+..++-.+.....++.++.+|.-+||-++...
T Consensus 17 ~~Lt~eEa~~~~~~i~~G~~sd~QiaAfL~Alr~kGet~ 55 (436)
T 3h5q_A 17 HTLTTEEINFFIGGYVKGDIPDYQASSLAMAIYFQDMND 55 (436)
T ss_dssp CCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHCCCH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCH
Confidence 467888888887777655569999999999999888764
No 37
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=37.47 E-value=47 Score=24.55 Aligned_cols=40 Identities=8% Similarity=0.025 Sum_probs=30.7
Q ss_pred CCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccC
Q psy1333 4 QSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLS 43 (79)
Q Consensus 4 g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~ 43 (79)
.++|.+|+..++-.+-....|+.+|.+|--+||-++...+
T Consensus 37 ~~Ls~eEa~~~~~~i~~G~~~~~QiaAfL~Alr~kGet~e 76 (377)
T 3r88_A 37 RDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTAD 76 (377)
T ss_dssp CCCCTTHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCcCHH
Confidence 4678888877776664444599999999999999987653
No 38
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=37.22 E-value=41 Score=21.00 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=25.4
Q ss_pred CChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q psy1333 6 DTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGE 40 (79)
Q Consensus 6 ~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~ 40 (79)
+++..-..+|.-|+ +-+|.+||...++.+.+.+.
T Consensus 23 VP~~Dy~PLlALL~-r~Ltdeev~~Va~~L~~~~~ 56 (103)
T 2kvc_A 23 IPPTDSFAVLALLC-RRLSHDEVKAVANELMRLGD 56 (103)
T ss_dssp CCHHHHHHHHHHHT-TTSCHHHHHHHHHHHHHHTS
T ss_pred CCCcchHHHHHHHh-ccCCHHHHHHHHHHHHHcCC
Confidence 44555555665554 67999999999999998874
No 39
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=36.44 E-value=44 Score=21.19 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=24.9
Q ss_pred CChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCC
Q psy1333 6 DTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGE 40 (79)
Q Consensus 6 ~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~ 40 (79)
+++..-..+|.-|+ +-+|.+||...++.+.+.+.
T Consensus 25 VP~~Dy~PLLALL~-r~Ltdeev~~Va~~L~~~~~ 58 (112)
T 2lky_A 25 VPGPDRVPLLALLT-RRLTNDEIKAIAEDLEKRAH 58 (112)
T ss_dssp CCHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHHCC
T ss_pred CCCcchHHHHHHHc-ccCCHHHHHHHHHHHHHcCC
Confidence 44445555555554 88999999999999998864
No 40
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=36.43 E-value=40 Score=17.49 Aligned_cols=20 Identities=35% Similarity=0.343 Sum_probs=17.9
Q ss_pred HhcCCCHHHHHHHHHHHHhh
Q psy1333 19 FINGLTNEETIALTKSMVDS 38 (79)
Q Consensus 19 ~~kGet~~Ei~g~~~am~~~ 38 (79)
..+++|.-|+..+++.|.++
T Consensus 9 ~i~~lTvlE~~eLvk~leek 28 (40)
T 1dd4_C 9 AIEKLTVSELAELVKKLEDK 28 (40)
T ss_dssp HHTTSCHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHH
Confidence 46899999999999999875
No 41
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=36.31 E-value=21 Score=17.50 Aligned_cols=20 Identities=35% Similarity=0.343 Sum_probs=16.9
Q ss_pred HhcCCCHHHHHHHHHHHHhh
Q psy1333 19 FINGLTNEETIALTKSMVDS 38 (79)
Q Consensus 19 ~~kGet~~Ei~g~~~am~~~ 38 (79)
..+++|.-|+..++++|-+.
T Consensus 9 ~i~~lTvlEl~eLvk~lEe~ 28 (30)
T 1zav_U 9 AIEKLTVSELAELVKKLEDK 28 (30)
T ss_dssp HHHHSBHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHH
Confidence 35789999999999999764
No 42
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=35.86 E-value=50 Score=22.08 Aligned_cols=29 Identities=14% Similarity=0.215 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy1333 10 VPRAMLMAMFINGLTNEETIALTKSMVDS 38 (79)
Q Consensus 10 qiaafL~al~~kGet~~Ei~g~~~am~~~ 38 (79)
.+-+|+..+..+|.|.+|+..+...+|+.
T Consensus 223 ~~~~~~~~l~~~g~~~~e~~~~~~~~~~~ 251 (284)
T 3gu3_A 223 DKQQFVERLIARGLTYDNALAQYEAELRF 251 (284)
T ss_dssp CHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccccHHHHHHHHHHHHHH
Confidence 45678888889999999999998888854
No 43
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=32.71 E-value=13 Score=26.11 Aligned_cols=29 Identities=31% Similarity=0.346 Sum_probs=23.0
Q ss_pred ceeeeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 50 VVDKHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 50 ~vD~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
++=+.|-||.|+ -++...|..+|..|.+|
T Consensus 16 i~v~sgKGGvGKTTvA~~LA~~lA~~G~rV 45 (324)
T 3zq6_A 16 FVFIGGKGGVGKTTISAATALWMARSGKKT 45 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHCCCcE
Confidence 344678899999 68888888888888876
No 44
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=32.59 E-value=14 Score=26.37 Aligned_cols=29 Identities=34% Similarity=0.334 Sum_probs=23.3
Q ss_pred ceeeeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 50 VVDKHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 50 ~vD~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
++=+.|-||.|+ -++...|..+|..|.+|
T Consensus 28 i~v~sgKGGvGKTTvA~~LA~~lA~~G~rV 57 (349)
T 3ug7_A 28 YIMFGGKGGVGKTTMSAATGVYLAEKGLKV 57 (349)
T ss_dssp EEEEECSSSTTHHHHHHHHHHHHHHSSCCE
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCeE
Confidence 344688999999 78888888888888876
No 45
>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural genomics, PSI-2, protein structure initiative; HET: PGE; 1.86A {Staphylococcus aureus subsp} SCOP: c.94.1.0
Probab=31.47 E-value=61 Score=22.66 Aligned_cols=28 Identities=7% Similarity=-0.109 Sum_probs=24.3
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCHHHHH
Q psy1333 2 VTQSDTNNVPRAMLMAMFINGLTNEETI 29 (79)
Q Consensus 2 ~~g~~~~~qiaafL~al~~kGet~~Ei~ 29 (79)
+.+++++.++..+...+..+|++++|++
T Consensus 244 l~~~lt~~~m~~ln~~v~~~~~~~~~vA 271 (282)
T 3o66_A 244 LTGKISTSEMQRLNYEADGKGKEPAVVA 271 (282)
T ss_dssp TTTCCCHHHHHHHHHHHHTSCCCHHHHH
T ss_pred HhccCCHHHHHHHHHHHHhCCCCHHHHH
Confidence 3578999999999999888899999985
No 46
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=30.89 E-value=17 Score=19.05 Aligned_cols=34 Identities=29% Similarity=0.200 Sum_probs=29.3
Q ss_pred CCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q psy1333 4 QSDTNNVPRAMLMAMFINGLTNEETIALTKSMVD 37 (79)
Q Consensus 4 g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~ 37 (79)
-++...|.-||--.|.+.+.|.++--++.+.+++
T Consensus 4 ~~~~~~QQnaFYevLh~~nLtEeQrn~yI~slkd 37 (38)
T 1zda_A 4 QSFNMQQQRRFYEALHDPNLNEEQRNAKIKSIRD 37 (38)
T ss_dssp TTTTTTSSHHHHHHHSCSSSCTTHHHHHHHHHSC
T ss_pred cchhHHHHHHHHHHHcCCCCCHHHHHhHHHHhhc
Confidence 4567788889999999999999999999888764
No 47
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=30.74 E-value=16 Score=26.26 Aligned_cols=29 Identities=28% Similarity=0.244 Sum_probs=23.4
Q ss_pred ceeeeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 50 VVDKHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 50 ~vD~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
++=+.|-||.|+ -+|...|..+|..|-+|
T Consensus 18 i~~~sgkGGvGKTt~a~~lA~~la~~g~~v 47 (334)
T 3iqw_A 18 WIFVGGKGGVGKTTTSCSLAIQLAKVRRSV 47 (334)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTSSSCE
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhCCCcE
Confidence 344688999999 78888888888888776
No 48
>2m0n_A Putative uncharacterized protein; tuberculosis, structural genomics, seattle structural genomi for infectious disease, ssgcid; NMR {Mycobacterium abscessus}
Probab=29.88 E-value=94 Score=19.63 Aligned_cols=40 Identities=8% Similarity=0.097 Sum_probs=32.9
Q ss_pred CCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccC
Q psy1333 4 QSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLS 43 (79)
Q Consensus 4 g~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~ 43 (79)
+.+++.+|+.+.+-+...--++++|.--+.-|-..+-++.
T Consensus 64 ~~i~~~dI~v~It~VT~e~P~peDI~RV~arLaA~GWPl~ 103 (112)
T 2m0n_A 64 GVVSKDEIEKFIADVTKDEPTAQDISRVASRLAAGGWPLA 103 (112)
T ss_dssp SCCCTTHHHHHHHHTTTCCCCHHHHHHHHHHHHHCCTTTS
T ss_pred CCCCHHHHHHHHHHHhccCcCHHHHHHHHHHHHhcCCCCC
Confidence 3478888998888887777799999999888888887765
No 49
>3r6u_A Choline-binding protein; substrate binding protein, ABC-transporter, extracellular, transport protein; 1.61A {Bacillus subtilis} SCOP: c.94.1.0 PDB: 3ppq_A 3ppo_A* 3ppp_A 3ppn_A 3ppr_A*
Probab=29.76 E-value=67 Score=22.45 Aligned_cols=28 Identities=4% Similarity=-0.224 Sum_probs=24.3
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCHHHHH
Q psy1333 2 VTQSDTNNVPRAMLMAMFINGLTNEETI 29 (79)
Q Consensus 2 ~~g~~~~~qiaafL~al~~kGet~~Ei~ 29 (79)
+++.+++.++..+...+..+|++++|++
T Consensus 245 l~~~lt~~~m~~ln~~v~~~~~~~~~vA 272 (284)
T 3r6u_A 245 MLGKIDTATMQELNYEVDGNLKEPSVVA 272 (284)
T ss_dssp TTTCCCHHHHHHHHHHHHTSCCCHHHHH
T ss_pred HHccCCHHHHHHHHHHHHhCCCCHHHHH
Confidence 3578999999999998888899999985
No 50
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=29.75 E-value=70 Score=21.54 Aligned_cols=27 Identities=11% Similarity=0.027 Sum_probs=21.2
Q ss_pred CCCCChHHHHHHHHHHHhcCCCHHHHH
Q psy1333 3 TQSDTNNVPRAMLMAMFINGLTNEETI 29 (79)
Q Consensus 3 ~g~~~~~qiaafL~al~~kGet~~Ei~ 29 (79)
.+.+++.++..+...+..+|++++|++
T Consensus 238 ~~~l~~~~~~~l~~~v~~~~~~~~~vA 264 (275)
T 1sw5_A 238 EDRIDTDTMRALNYQYDVEKKDAREIA 264 (275)
T ss_dssp TTCCCHHHHHHHHHHHHTSCCCHHHHH
T ss_pred HccCCHHHHHHHHHHHHhcCCCHHHHH
Confidence 456888888888877777788888874
No 51
>3qwo_C Motavizumab epitope scaffold; immune complex, immune system; HET: EDO; 1.90A {Staphylococcus aureus} SCOP: a.8.1.1
Probab=28.90 E-value=74 Score=17.90 Aligned_cols=33 Identities=18% Similarity=0.099 Sum_probs=25.5
Q ss_pred CChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy1333 6 DTNNVPRAMLMAMFINGLTNEETIALTKSMVDS 38 (79)
Q Consensus 6 ~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~ 38 (79)
++++|.-||---|.+.+.|.++--++...+.+.
T Consensus 2 ~~~~qQ~AFYeil~lpnLtEeqRn~yI~slkdD 34 (57)
T 3qwo_C 2 YNDEKKLASNEIANLPNLNEEQRSAFLSSINDD 34 (57)
T ss_dssp HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHcCCCcchhhccchHhhhccC
Confidence 346777788888888888888888888877764
No 52
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=27.97 E-value=71 Score=16.68 Aligned_cols=26 Identities=12% Similarity=0.068 Sum_probs=19.9
Q ss_pred CCCChHHHHHHHHHHHhcCCCHHHHHHH
Q psy1333 4 QSDTNNVPRAMLMAMFINGLTNEETIAL 31 (79)
Q Consensus 4 g~~~~~qiaafL~al~~kGet~~Ei~g~ 31 (79)
..+|+.|..-|.. ...|.|..||+..
T Consensus 10 ~~L~~~e~~il~~--~~~g~s~~eIA~~ 35 (74)
T 1fse_A 10 PLLTKREREVFEL--LVQDKTTKEIASE 35 (74)
T ss_dssp CCCCHHHHHHHHH--HTTTCCHHHHHHH
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHH
Confidence 4578888876665 3899999999753
No 53
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=27.01 E-value=66 Score=22.82 Aligned_cols=30 Identities=37% Similarity=0.317 Sum_probs=21.7
Q ss_pred Cceeee-ccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 49 IVVDKH-STGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 49 ~~vD~~-gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
.+|=.. +-||.|+ .++.-.|..+|..|.+|
T Consensus 144 kvIav~s~KGGvGKTT~a~nLA~~La~~g~rV 175 (373)
T 3fkq_A 144 SVVIFTSPCGGVGTSTVAAACAIAHANMGKKV 175 (373)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHHTCCE
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhCCCCE
Confidence 344445 4899998 67777777888778776
No 54
>2v7s_A Probable conserved lipoprotein LPPA; unknown function, putative lipoprotein; 1.96A {Mycobacterium tuberculosis}
Probab=26.55 E-value=23 Score=24.96 Aligned_cols=30 Identities=17% Similarity=0.056 Sum_probs=21.1
Q ss_pred CChHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy1333 6 DTNNVPRAMLMAMFINGLTNEETIALTKSM 35 (79)
Q Consensus 6 ~~~~qiaafL~al~~kGet~~Ei~g~~~am 35 (79)
++++|+++|.-.||.||--.+.-..+..+|
T Consensus 41 ~speqva~~ed~lR~kps~E~a~~~l~Aal 70 (215)
T 2v7s_A 41 LTGEQKIQLIDSMRNKGSYEAARERLTATA 70 (215)
T ss_dssp HHHHHHHHHHHHHGGGCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 578999999999999996444433333333
No 55
>2h2m_A Protein MURR1, COMM domain-containing protein 1; all alpha-helical, metal transport; NMR {Homo sapiens}
Probab=26.03 E-value=9.4 Score=24.30 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=30.9
Q ss_pred CCCCChHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhhCCcc
Q psy1333 3 TQSDTNNVPRAMLMAMFIN--GLTNEETIALTKSMVDSGETL 42 (79)
Q Consensus 3 ~g~~~~~qiaafL~al~~k--Get~~Ei~g~~~am~~~~~~~ 42 (79)
.-++.-.|+.+||.+...| |.|.++-.++++-+..+-.++
T Consensus 64 ~admd~nqleafLt~qtkkq~gls~eQa~~~~KFWK~~k~KI 105 (108)
T 2h2m_A 64 SADMDFNQLEAFLTAQTKKQGGITSDQAAVISKFWKSHKTKI 105 (108)
T ss_dssp TTCCCTTTSTTTHHHHTTSSSCCCHHHHHHHTTTTTTTSSSS
T ss_pred HhhccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhchhhh
Confidence 4466777899999988765 469999999998777766555
No 56
>3lgb_A DNA primase large subunit; Fe-S cluster, DNA-binding, DNA-directed RNA POL iron, iron-sulfur, metal-binding, nucleotidyltransferase; HET: DNA MSE EPE; 1.54A {Saccharomyces cerevisiae}
Probab=26.01 E-value=65 Score=22.08 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy1333 9 NVPRAMLMAMFINGLTNEETIALTKSM 35 (79)
Q Consensus 9 ~qiaafL~al~~kGet~~Ei~g~~~am 35 (79)
-|++.|| +--|++.||+..|.+..
T Consensus 41 ~ql~lFL---kgiGls~ee~l~f~r~~ 64 (194)
T 3lgb_A 41 QQLSLFL---KGIGLSADEALKFWSEA 64 (194)
T ss_dssp HHHHHHH---HHTTCCHHHHHHHHHHH
T ss_pred HHHHHHH---HhCCCCHHHHHHHHHHH
Confidence 4788887 45799999999988753
No 57
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=26.00 E-value=19 Score=24.58 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=23.4
Q ss_pred CceeeeccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 49 IVVDKHSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 49 ~~vD~~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
.+|=..|-||.|+ -++.-.|..+|..|.+|
T Consensus 42 ~vI~v~~KGGvGKTT~a~nLA~~La~~G~~V 72 (307)
T 3end_A 42 KVFAVYGKGGIGKSTTSSNLSAAFSILGKRV 72 (307)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHCCCeE
Confidence 3455569999999 67777888888888876
No 58
>3d7i_A Carboxymuconolactone decarboxylase family protein; 1591455, structural genomics, JOI for structural genomics, JCSG; HET: MSE PG4; 1.75A {Methanocaldococcus jannaschii}
Probab=25.86 E-value=1e+02 Score=17.79 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=20.9
Q ss_pred ChHHHHHHHHHHH-hcCCCHHHHHHHHHHH
Q psy1333 7 TNNVPRAMLMAMF-INGLTNEETIALTKSM 35 (79)
Q Consensus 7 ~~~qiaafL~al~-~kGet~~Ei~g~~~am 35 (79)
.++++..-.-..+ ..|.|.+||.......
T Consensus 57 c~~cl~~H~~~A~~~~G~t~eei~e~~~~~ 86 (105)
T 3d7i_A 57 DEVAIEKQMKSAMKELGITKEEIADVLRVV 86 (105)
T ss_dssp CHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4567777666666 8899999998665544
No 59
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=25.71 E-value=70 Score=18.84 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=19.8
Q ss_pred CCChHHHHHHHHHHHhcCCCHHHHHHH
Q psy1333 5 SDTNNVPRAMLMAMFINGLTNEETIAL 31 (79)
Q Consensus 5 ~~~~~qiaafL~al~~kGet~~Ei~g~ 31 (79)
.+|+.|--.|. ++..|+|..||+..
T Consensus 109 ~L~~~~r~v~~--~~~~g~s~~EIA~~ 133 (164)
T 3mzy_A 109 NFSKFEKEVLT--YLIRGYSYREIATI 133 (164)
T ss_dssp HSCHHHHHHHH--HHTTTCCHHHHHHH
T ss_pred hCCHHHHHHHH--HHHcCCCHHHHHHH
Confidence 56777777776 68999999999753
No 60
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=25.65 E-value=1.3e+02 Score=18.82 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=9.6
Q ss_pred cCCCHHHHHHHHHHHHhhC
Q psy1333 21 NGLTNEETIALTKSMVDSG 39 (79)
Q Consensus 21 kGet~~Ei~g~~~am~~~~ 39 (79)
+-+|.+||...+..+.+.+
T Consensus 42 R~Ltddev~~Va~~L~~~~ 60 (107)
T 3ol3_A 42 RSLTEDEVVRAAQAILRST 60 (107)
T ss_dssp CCCCHHHHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHHhcc
Confidence 3355555555555555443
No 61
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=25.57 E-value=48 Score=21.62 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=22.1
Q ss_pred HhcCCCHHHHHHHHHHHHhhCCccCC
Q psy1333 19 FINGLTNEETIALTKSMVDSGETLSW 44 (79)
Q Consensus 19 ~~kGet~~Ei~g~~~am~~~~~~~~~ 44 (79)
..+|+|.+|+..+.+.+|+++..+.+
T Consensus 28 ~~~gltv~~~~~LR~~lr~~g~~~~V 53 (173)
T 2j01_J 28 NYQGLPAKETHALRQALKQNGARLFV 53 (173)
T ss_pred EcCCCCHHHHHHHHHHHHHCCcEEEE
Confidence 57899999999999999998766543
No 62
>2ija_A Arylamine N-acetyltransferase 1; arylamide acetylase 1, structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} PDB: 2pqt_A* 2pfr_A*
Probab=25.40 E-value=4.9 Score=28.60 Aligned_cols=75 Identities=17% Similarity=0.142 Sum_probs=41.4
Q ss_pred CCCChHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhhCCccCCCCC------C------Cceee---eccCCCCCCcchHH
Q psy1333 4 QSDTNNVPRAMLMAMFIN-GLTNEETIALTKSMVDSGETLSWGPE------G------IVVDK---HSTGGVGDKVSIPL 67 (79)
Q Consensus 4 g~~~~~qiaafL~al~~k-Get~~Ei~g~~~am~~~~~~~~~~~~------~------~~vD~---~gTGGdg~niSt~~ 67 (79)
|.++..|+.++|.=+... +....-+..|.+-++.|...+|++.. . .+.+| -+-||..--.....
T Consensus 1 ~~~~~~~l~~Yl~RIg~~~~~~~~~l~~L~~L~~~h~~~IPFENLdv~~g~~i~ld~~~l~~KiV~~~RGGyC~ElN~Lf 80 (295)
T 2ija_A 1 GSGSGSDIEAYLERIGYKKSRNKLDLETLTDILQHQIRAVPFENLNIHCGDAMDLGLEAIFDQVVRRNRGGWCLQVNHLL 80 (295)
T ss_dssp ---CCCHHHHHHHHTTCCSCCCCCSHHHHHHHHHHHHHHSCEECTTGGGTCCCCCSHHHHHHHHHTTCCCBCHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhhCCCCcChhhhcCCCCCCCHHHHHHHHhcCCCcEEhHHHHHHH
Confidence 567888999999888776 43333455555666666555555421 0 01121 34555555455566
Q ss_pred HHHHhcCCCCC
Q psy1333 68 VPALAACGLKP 78 (79)
Q Consensus 68 a~v~Aa~Gv~V 78 (79)
+-+|-++|..|
T Consensus 81 ~~~L~~LGF~V 91 (295)
T 2ija_A 81 YWALTTIGFET 91 (295)
T ss_dssp HHHHHHHTCEE
T ss_pred HHHHHHcCCcE
Confidence 66666666554
No 63
>4gim_A Pseudouridine-5'-phosphate glycosidase; alpha-beta-alpha sandwich fold, hydrolase; HET: PSU; 1.80A {Escherichia coli} PDB: 4gij_A 4gik_A* 4gil_A*
Probab=25.40 E-value=24 Score=26.33 Aligned_cols=53 Identities=19% Similarity=0.143 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHHhhCCccCCCCCCCceeeeccCCCCCCcchHHHHHHhcCCCCC
Q psy1333 22 GLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGVGDKVSIPLVPALAACGLKP 78 (79)
Q Consensus 22 Get~~Ei~g~~~am~~~~~~~~~~~~~~~vD~~gTGGdg~niSt~~a~v~Aa~Gv~V 78 (79)
|++.+||..+++.= +.-.|+ +. +++--.+..|.+|.-+-....+++..+|++|
T Consensus 98 GL~~~ele~la~~~-~~v~K~--Sr-RDl~~~~a~~~~GaTTVaaTm~lA~~AGI~V 150 (335)
T 4gim_A 98 GLSKEEIELLGREG-HNVTKV--SR-RDLPFVVAAGKNGATTVASTMIIAALAGIKV 150 (335)
T ss_dssp SCCHHHHHHHHHHG-GGSEEE--CT-TTHHHHHHTTCCEEECHHHHHHHHHHTTCCE
T ss_pred cCCHHHHHHHHhcC-CCceee--ec-ccHHHHhhcCCCccccHHHHHHHHHHCCCcE
Confidence 68999999888531 122233 32 2222235677776644444556677788876
No 64
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=25.25 E-value=73 Score=17.71 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=19.5
Q ss_pred CChHHHHHH--HHHHH-hcCCCHHHHHHHHH
Q psy1333 6 DTNNVPRAM--LMAMF-INGLTNEETIALTK 33 (79)
Q Consensus 6 ~~~~qiaaf--L~al~-~kGet~~Ei~g~~~ 33 (79)
+++.++.-+ +..++ ..|.+.+||..+..
T Consensus 45 Y~~~dl~~l~~I~~l~~~~G~sl~ei~~~l~ 75 (81)
T 2jml_A 45 YSREEVEAVRRVARLIQEEGLSVSEAIAQVK 75 (81)
T ss_dssp ECHHHHHHHHHHHHHHHHTSTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 566777654 45555 66999999986654
No 65
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=25.09 E-value=51 Score=18.61 Aligned_cols=17 Identities=12% Similarity=0.249 Sum_probs=12.0
Q ss_pred CCCCCChHHHHHHHHHH
Q psy1333 2 VTQSDTNNVPRAMLMAM 18 (79)
Q Consensus 2 ~~g~~~~~qiaafL~al 18 (79)
|..++++.|.-|+|-||
T Consensus 1 Mkd~lt~eq~~aILkaL 17 (57)
T 3fxd_A 1 MKDQLSDEQKETILKAL 17 (57)
T ss_dssp ---CCCHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHH
Confidence 56788999998888776
No 66
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.59 E-value=77 Score=21.18 Aligned_cols=31 Identities=10% Similarity=0.044 Sum_probs=25.6
Q ss_pred CCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhh
Q psy1333 5 SDTNNVPRAMLMAMFINGLTNEETIALTKSMVDS 38 (79)
Q Consensus 5 ~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~ 38 (79)
+++++|+-...+=|..||.|+.+|= -.+|+.
T Consensus 27 ~~~~eev~~~i~klakkG~~pSqIG---~~LRD~ 57 (158)
T 3j20_Q 27 EYTVEEIENLVVKLRKEGYSTAMIG---TILRDQ 57 (158)
T ss_dssp CCCHHHHHHHHHHHHHHTCCHHHHH---HHHHHT
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHhh---HHHhcc
Confidence 4788999999999999999999995 445643
No 67
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=23.88 E-value=93 Score=20.72 Aligned_cols=25 Identities=16% Similarity=0.073 Sum_probs=21.8
Q ss_pred CCChHHHHHHHHHHHhcCCCHHHHH
Q psy1333 5 SDTNNVPRAMLMAMFINGLTNEETI 29 (79)
Q Consensus 5 ~~~~~qiaafL~al~~kGet~~Ei~ 29 (79)
+++++|+-...+=|..||.|+.+|=
T Consensus 29 ~~~~eeVe~~I~klakkG~tpSqIG 53 (153)
T 2xzm_O 29 HMTPSTVVDLSVKLAKKGLTPSQIG 53 (153)
T ss_dssp CCCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCCCHHHhh
Confidence 4688899999999999999999985
No 68
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=23.78 E-value=85 Score=16.18 Aligned_cols=30 Identities=7% Similarity=-0.043 Sum_probs=20.4
Q ss_pred CCCCChHHHHHHHHHHHhcCCCHHHHHHHHHH
Q psy1333 3 TQSDTNNVPRAMLMAMFINGLTNEETIALTKS 34 (79)
Q Consensus 3 ~g~~~~~qiaafL~al~~kGet~~Ei~g~~~a 34 (79)
+|.++..++..+|..+. ..+.+|+..+.+.
T Consensus 17 ~G~i~~~el~~~l~~~g--~~~~~~~~~~~~~ 46 (78)
T 1k9u_A 17 DGKISLSELTDALRTLG--STSADEVQRMMAE 46 (78)
T ss_dssp SSEECHHHHHHHHHHHH--TCCHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 46677778877777765 6777777655443
No 69
>3bey_A Conserved protein O27018; TT217, NESG, structural genomics, PSI-2, PROT structure initiative; 2.40A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=23.76 E-value=1.1e+02 Score=17.25 Aligned_cols=29 Identities=14% Similarity=0.119 Sum_probs=20.8
Q ss_pred ChHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy1333 7 TNNVPRAMLMAMFINGLTNEETIALTKSM 35 (79)
Q Consensus 7 ~~~qiaafL~al~~kGet~~Ei~g~~~am 35 (79)
.++++..-.-..+..|.|.+||.......
T Consensus 50 c~~c~~~H~~~a~~~G~t~~ei~~~~~~~ 78 (96)
T 3bey_A 50 CDACTRRHAEEALEAGITEGELAEAAAVA 78 (96)
T ss_dssp CHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 35666666677778899999997765443
No 70
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=23.65 E-value=86 Score=17.41 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=19.8
Q ss_pred CCCChHHHHHHHHHHHhcCCCHHHHHHH
Q psy1333 4 QSDTNNVPRAMLMAMFINGLTNEETIAL 31 (79)
Q Consensus 4 g~~~~~qiaafL~al~~kGet~~Ei~g~ 31 (79)
.++|+.|.-.|.. +..|+|..||+..
T Consensus 20 ~~Lt~~e~~vl~l--~~~g~s~~eIA~~ 45 (82)
T 1je8_A 20 NQLTPRERDILKL--IAQGLPNKMIARR 45 (82)
T ss_dssp GGSCHHHHHHHHH--HTTTCCHHHHHHH
T ss_pred ccCCHHHHHHHHH--HHcCCCHHHHHHH
Confidence 3578888876665 4899999999853
No 71
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=23.55 E-value=92 Score=19.38 Aligned_cols=16 Identities=38% Similarity=0.351 Sum_probs=12.7
Q ss_pred HHHHHhcCCCHHHHHH
Q psy1333 15 LMAMFINGLTNEETIA 30 (79)
Q Consensus 15 L~al~~kGet~~Ei~g 30 (79)
-+|-..||.|++||..
T Consensus 116 ~vA~~ikgkt~eeiR~ 131 (141)
T 1fs1_B 116 TVANMIKGKTPEEIRK 131 (141)
T ss_dssp HHHHHHTTCCHHHHHH
T ss_pred HHHHHHcCCCHHHHHH
Confidence 4566789999999863
No 72
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=23.45 E-value=14 Score=23.67 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=20.4
Q ss_pred eccCCCCC-CcchHHHHHHhcCCCCC
Q psy1333 54 HSTGGVGD-KVSIPLVPALAACGLKP 78 (79)
Q Consensus 54 ~gTGGdg~-niSt~~a~v~Aa~Gv~V 78 (79)
.|-||.|+ -++.-.|..+|..|.+|
T Consensus 6 s~kGGvGKTt~a~~LA~~la~~g~~V 31 (254)
T 3kjh_A 6 AGKGGVGKTTVAAGLIKIMASDYDKI 31 (254)
T ss_dssp ECSSSHHHHHHHHHHHHHHTTTCSCE
T ss_pred ecCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 67899998 67777788888888776
No 73
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=23.20 E-value=89 Score=20.77 Aligned_cols=25 Identities=12% Similarity=0.030 Sum_probs=21.8
Q ss_pred CCChHHHHHHHHHHHhcCCCHHHHH
Q psy1333 5 SDTNNVPRAMLMAMFINGLTNEETI 29 (79)
Q Consensus 5 ~~~~~qiaafL~al~~kGet~~Ei~ 29 (79)
+++++|+-...+=|..||.|+.+|=
T Consensus 27 ~~~~eeVe~~I~klakkG~tpSqIG 51 (151)
T 3u5c_N 27 KLSSESVIEQIVKYARKGLTPSQIG 51 (151)
T ss_dssp CSCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHhh
Confidence 4678899999999999999999985
No 74
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=22.83 E-value=29 Score=25.09 Aligned_cols=29 Identities=24% Similarity=0.189 Sum_probs=23.0
Q ss_pred ceeeeccCCCCC-CcchHHHHHHh--cCCCCC
Q psy1333 50 VVDKHSTGGVGD-KVSIPLVPALA--ACGLKP 78 (79)
Q Consensus 50 ~vD~~gTGGdg~-niSt~~a~v~A--a~Gv~V 78 (79)
++=..|-||.|+ -++...|..+| ..|-+|
T Consensus 20 i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~v 51 (348)
T 3io3_A 20 WIFVGGKGGVGKTTTSSSVAVQLALAQPNEQF 51 (348)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHCTTSCE
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeE
Confidence 444689999999 68888888888 788776
No 75
>3omd_A Uncharacterized protein; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, unknown function; HET: MSE; 1.50A {Leptospirillum rubarum}
Probab=22.51 E-value=1e+02 Score=20.10 Aligned_cols=34 Identities=6% Similarity=-0.030 Sum_probs=19.6
Q ss_pred CChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhC
Q psy1333 6 DTNNVPRAMLMAMFINGLTNEETIALTKSMVDSG 39 (79)
Q Consensus 6 ~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~ 39 (79)
-+|.|+-+++-.-..+..+.+||...-+.|.+++
T Consensus 73 ~sD~eil~wv~~~~~~~~s~~eI~~WN~~~~~rg 106 (145)
T 3omd_A 73 PQDQDMLAWVHSQSPRSKNPKEVESFNREYESRS 106 (145)
T ss_dssp CSHHHHHHHHHHHCGGGGCHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Confidence 4566666665443222446677766666666654
No 76
>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}
Probab=22.50 E-value=36 Score=24.93 Aligned_cols=37 Identities=19% Similarity=0.155 Sum_probs=27.5
Q ss_pred cCCCHHHHHHHHHHHHhhCCccCCCCCCCceeeeccCC
Q psy1333 21 NGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGG 58 (79)
Q Consensus 21 kGet~~Ei~g~~~am~~~~~~~~~~~~~~~vD~~gTGG 58 (79)
|-+|.+||..+.+.+.+.+.+..--. .+.|++|+.-|
T Consensus 141 r~mt~~eI~~ii~~f~~AA~~a~~aG-fDgVEih~a~G 177 (362)
T 4ab4_A 141 RALETEEINDIVEAYRSGAENAKAAG-FDGVEIHGANG 177 (362)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTT-CSEEEEECCTT
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcC-CCEEEECCcCc
Confidence 56899999999999988876653222 35799998754
No 77
>2cwq_A Hypothetical protein TTHA0727; conserved hypothetical protein, all alpha, structural genomi NPPSFA; 1.90A {Thermus thermophilus} SCOP: a.152.1.4
Probab=22.39 E-value=1.2e+02 Score=18.71 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy1333 8 NNVPRAMLMAMFINGLTNEETIALTK 33 (79)
Q Consensus 8 ~~qiaafL~al~~kGet~~Ei~g~~~ 33 (79)
++++..-.-..+..|.|.+||.....
T Consensus 91 ~~Cl~~H~~~A~~~G~t~eeI~eal~ 116 (137)
T 2cwq_A 91 EACVKAMAHRAKRLGLSKEALLETLK 116 (137)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56677777777889999999976554
No 78
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=22.38 E-value=25 Score=25.51 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=26.7
Q ss_pred cCCCHHHHHHHHHHHHhhCCccCCCCCCCceeeeccCC
Q psy1333 21 NGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGG 58 (79)
Q Consensus 21 kGet~~Ei~g~~~am~~~~~~~~~~~~~~~vD~~gTGG 58 (79)
+-+|.+||..+.+.+.+.+.+..--. .+.|++|+.-|
T Consensus 131 ~~mt~~eI~~ii~~f~~AA~~a~~aG-fDgVEih~ahG 167 (343)
T 3kru_A 131 RELSVEEIKSIVKAFGEAAKRANLAG-YDVVEIHAAHG 167 (343)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHHT-CSEEEEEECTT
T ss_pred hhcCHHHHHHHHHHHHHHHhhccccC-CceEEEecccc
Confidence 56899999999999988876653221 34688887544
No 79
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=22.00 E-value=97 Score=17.74 Aligned_cols=28 Identities=18% Similarity=-0.013 Sum_probs=16.8
Q ss_pred CCCCChHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy1333 3 TQSDTNNVPRAMLMAMFINGLTNEETIALTK 33 (79)
Q Consensus 3 ~g~~~~~qiaafL~al~~kGet~~Ei~g~~~ 33 (79)
+|.++-.++..+|.. -|.+.+|+..+.+
T Consensus 25 dG~Is~~el~~~l~~---~~l~~~~l~~i~~ 52 (99)
T 1qjt_A 25 TGRVLALDAAAFLKK---SGLPDLILGKIWD 52 (99)
T ss_dssp SSCCCSHHHHHHHHT---SSSCHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHH---cCCCHHHHHHHHH
Confidence 466777777776643 3566666654443
No 80
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=21.92 E-value=26 Score=25.25 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=26.9
Q ss_pred cCCCHHHHHHHHHHHHhhCCccCCCCCCCceeeeccCC
Q psy1333 21 NGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGG 58 (79)
Q Consensus 21 kGet~~Ei~g~~~am~~~~~~~~~~~~~~~vD~~gTGG 58 (79)
|-+|.+||..+.+.+.+.+.+..--. .+.|++|+.-|
T Consensus 132 ~~mt~~eI~~ii~~f~~aA~~a~~aG-fDgVEih~a~G 168 (340)
T 3gr7_A 132 KEMTKADIEETVQAFQNGARRAKEAG-FDVIEIHAAHG 168 (340)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHHT-CSEEEEEECTT
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcC-CCEEEEccccc
Confidence 55899999999999988876653211 34688887644
No 81
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=21.87 E-value=26 Score=25.37 Aligned_cols=37 Identities=14% Similarity=0.138 Sum_probs=27.2
Q ss_pred cCCCHHHHHHHHHHHHhhCCccCCCCCCCceeeeccCC
Q psy1333 21 NGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGG 58 (79)
Q Consensus 21 kGet~~Ei~g~~~am~~~~~~~~~~~~~~~vD~~gTGG 58 (79)
|-+|.+||..+.+.+.+.+.+..--. .+.|++|+.-|
T Consensus 146 ~~mt~~eI~~ii~~f~~aA~~a~~aG-fDgVEih~a~G 182 (363)
T 3l5l_A 146 REMTLDDIARVKQDFVDAARRARDAG-FEWIELHFAHG 182 (363)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHHT-CSEEEEEECTT
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcC-CCEEEEccccc
Confidence 56899999999999998876653211 34689998654
No 82
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=21.29 E-value=76 Score=14.68 Aligned_cols=26 Identities=8% Similarity=-0.017 Sum_probs=18.6
Q ss_pred CCChHHHHHHHHHHHhcCCCHHHHHHH
Q psy1333 5 SDTNNVPRAMLMAMFINGLTNEETIAL 31 (79)
Q Consensus 5 ~~~~~qiaafL~al~~kGet~~Ei~g~ 31 (79)
.+++.+...++. ++..|+|..||+..
T Consensus 5 ~l~~~~~~~i~~-~~~~g~s~~~IA~~ 30 (51)
T 1tc3_C 5 ALSDTERAQLDV-MKLLNVSLHEMSRK 30 (51)
T ss_dssp CCCHHHHHHHHH-HHHTTCCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHcCCCHHHHHHH
Confidence 467777766654 45789999999744
No 83
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=21.28 E-value=1.1e+02 Score=16.94 Aligned_cols=26 Identities=8% Similarity=-0.017 Sum_probs=13.7
Q ss_pred CCCCChHHHHHHHHHHHhcCCCHHHHHHH
Q psy1333 3 TQSDTNNVPRAMLMAMFINGLTNEETIAL 31 (79)
Q Consensus 3 ~g~~~~~qiaafL~al~~kGet~~Ei~g~ 31 (79)
+|.++-.++..+|..+ |.+.+|+..+
T Consensus 23 dG~I~~~el~~~l~~~---g~~~~~~~~i 48 (92)
T 1fi6_A 23 NGFIPGSAAKEFFTKS---KLPILELSHI 48 (92)
T ss_dssp TCEEEHHHHHHHHHHH---SSCHHHHHHH
T ss_pred CCcCcHHHHHHHHHHc---CCCHHHHHHH
Confidence 3555566666655433 4555555433
No 84
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A
Probab=21.25 E-value=1e+02 Score=18.07 Aligned_cols=26 Identities=12% Similarity=0.064 Sum_probs=13.3
Q ss_pred CCCCChHHHHHHHHHHHhcCCCHHHHHHH
Q psy1333 3 TQSDTNNVPRAMLMAMFINGLTNEETIAL 31 (79)
Q Consensus 3 ~g~~~~~qiaafL~al~~kGet~~Ei~g~ 31 (79)
+|.++..|+-.+|..+ |.+.+|+..+
T Consensus 108 ~G~i~~~e~~~~l~~~---g~~~~~~~~~ 133 (174)
T 1q80_A 108 DNNISRDEYGIFFGML---GLDKTMAPAS 133 (174)
T ss_dssp SSSBCHHHHHHHHHHH---TCCGGGHHHH
T ss_pred CCcccHHHHHHHHHHc---CCCHHHHHHH
Confidence 3555556655555444 4555554433
No 85
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=21.21 E-value=96 Score=21.63 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhCCccCCCCCCCceeeeccCCCCCCcchHHHHHHhcCCC
Q psy1333 28 TIALTKSMVDSGETLSWGPEGIVVDKHSTGGVGDKVSIPLVPALAACGL 76 (79)
Q Consensus 28 i~g~~~am~~~~~~~~~~~~~~~vD~~gTGGdg~niSt~~a~v~Aa~Gv 76 (79)
-.||.+++++.+..++ . ..+=+.|+|| ++.+++.-++..|+
T Consensus 101 ~~G~~~~L~~~~~~l~--~--k~vlvlGaGg----~g~aia~~L~~~G~ 141 (277)
T 3don_A 101 GIGYVNGLKQIYEGIE--D--AYILILGAGG----ASKGIANELYKIVR 141 (277)
T ss_dssp HHHHHHHHHHHSTTGG--G--CCEEEECCSH----HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCcC--C--CEEEEECCcH----HHHHHHHHHHHCCC
Confidence 6788999988765543 2 2233589986 45566666777776
No 86
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=21.06 E-value=1.2e+02 Score=17.23 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=19.1
Q ss_pred CCChHHHHHHHHHHHhcCCCHHHHHH
Q psy1333 5 SDTNNVPRAMLMAMFINGLTNEETIA 30 (79)
Q Consensus 5 ~~~~~qiaafL~al~~kGet~~Ei~g 30 (79)
.+|+.|.-.|.. +..|+|..||+.
T Consensus 27 ~Lt~~e~~vl~l--~~~g~s~~eIA~ 50 (95)
T 3c57_A 27 GLTDQERTLLGL--LSEGLTNKQIAD 50 (95)
T ss_dssp CCCHHHHHHHHH--HHTTCCHHHHHH
T ss_pred cCCHHHHHHHHH--HHcCCCHHHHHH
Confidence 578888877765 389999999974
No 87
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=20.62 E-value=80 Score=16.79 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=17.2
Q ss_pred CChHHHHHHHHHHHhcCCCHHHHHH
Q psy1333 6 DTNNVPRAMLMAMFINGLTNEETIA 30 (79)
Q Consensus 6 ~~~~qiaafL~al~~kGet~~Ei~g 30 (79)
+|+.|.-.|.. +..|+|..||+.
T Consensus 17 L~~~e~~vl~l--~~~g~s~~eIA~ 39 (79)
T 1x3u_A 17 LSERERQVLSA--VVAGLPNKSIAY 39 (79)
T ss_dssp HCHHHHHHHHH--HTTTCCHHHHHH
T ss_pred CCHHHHHHHHH--HHcCCCHHHHHH
Confidence 56677766655 489999999975
No 88
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=20.55 E-value=39 Score=24.26 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=27.4
Q ss_pred cCCCHHHHHHHHHHHHhhCCccCCCCCCCceeeeccCC
Q psy1333 21 NGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGG 58 (79)
Q Consensus 21 kGet~~Ei~g~~~am~~~~~~~~~~~~~~~vD~~gTGG 58 (79)
|-+|.+||....+.+.+.+.+..-.. .+.|++|+--|
T Consensus 140 ~~mt~~eI~~ii~~f~~aA~~a~~aG-fDgVEih~a~G 176 (349)
T 3hgj_A 140 EPLDEAGMERILQAFVEGARRALRAG-FQVIELHMAHG 176 (349)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTT-CCEEEEEECTT
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcC-CCEEEECCccc
Confidence 56899999999999988876653222 35688888665
No 89
>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}
Probab=20.51 E-value=67 Score=23.43 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=20.0
Q ss_pred hcCCCHHHHHHHHHHHHhhCCccC
Q psy1333 20 INGLTNEETIALTKSMVDSGETLS 43 (79)
Q Consensus 20 ~kGet~~Ei~g~~~am~~~~~~~~ 43 (79)
..|+|.+|+..+++.+.+.....+
T Consensus 171 ~~GmT~~E~~~~~~~~~~~~~~~~ 194 (385)
T 4gxt_A 171 LKNYKTEEVYDLCKGAYASMKKER 194 (385)
T ss_dssp GTTCCHHHHHHHHHHHHHHHTTSC
T ss_pred HcCCCHHHHHHHHHHHHHhccccc
Confidence 479999999999999998765543
No 90
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=20.45 E-value=92 Score=15.98 Aligned_cols=16 Identities=0% Similarity=-0.184 Sum_probs=9.7
Q ss_pred CCCChHHHHHHHHHHH
Q psy1333 4 QSDTNNVPRAMLMAMF 19 (79)
Q Consensus 4 g~~~~~qiaafL~al~ 19 (79)
++.+++|++-+..+|+
T Consensus 10 ~dA~~Eela~Y~~~Lr 25 (36)
T 2bf9_A 10 DDAPVEDLIRFYNDLQ 25 (36)
T ss_dssp TTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 3456666666666654
No 91
>2bsz_A Arylamine N-acetyltransferase 1; acyltransferase, complete proteome; 2.0A {Rhizobium loti} SCOP: d.3.1.5
Probab=20.38 E-value=4.8 Score=28.55 Aligned_cols=74 Identities=18% Similarity=0.136 Sum_probs=42.9
Q ss_pred CCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCccCCCCC------------CCceee---eccCCCCCCcchHHHH
Q psy1333 5 SDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETLSWGPE------------GIVVDK---HSTGGVGDKVSIPLVP 69 (79)
Q Consensus 5 ~~~~~qiaafL~al~~kGet~~Ei~g~~~am~~~~~~~~~~~~------------~~~vD~---~gTGGdg~niSt~~a~ 69 (79)
..+..|+-++|.=+-..+....-+..+.+-++.|...+|++.. ..+.|| -+-||...-.....+-
T Consensus 3 ~~~~~~l~~Yl~RIg~~~~~~~~l~~L~~L~~~h~~~IPFENLdv~~g~~i~ld~~~l~~KiV~~~RGGyC~ElN~Lf~~ 82 (278)
T 2bsz_A 3 DAPPFDLDAYLARIGYTGPRNASLDTLKALHFAHPQAIPFENIDPFLGRPVRLDLAALQDKIVLGGRGGYCFEHNLLFMH 82 (278)
T ss_dssp ---CCCHHHHHHHHTCCSCCSSCHHHHHHHHHHHHHHSCEECHHHHTTCCCCCSHHHHHHHHTTSCCCBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCcCChhHhcCCCCCCCHHHHHHHHHhCCCCeehHHHHHHHHH
Confidence 4677889999998888776444455666666666555554320 012222 3566665555566666
Q ss_pred HHhcCCCCC
Q psy1333 70 ALAACGLKP 78 (79)
Q Consensus 70 v~Aa~Gv~V 78 (79)
++-++|..|
T Consensus 83 ~L~~LGF~V 91 (278)
T 2bsz_A 83 ALKALGFEV 91 (278)
T ss_dssp HHHHHTCEE
T ss_pred HHHHCCCeE
Confidence 677777654
No 92
>2af7_A Gamma-carboxymuconolactone decarboxylase; O26336_metth, NESG, TT747, structural genomics, PSI, protein structure initiative; 2.81A {Methanothermobacterthermautotrophicus} SCOP: a.152.1.2
Probab=20.31 E-value=1.5e+02 Score=17.72 Aligned_cols=29 Identities=14% Similarity=0.268 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy1333 7 TNNVPRAMLMAMFINGLTNEETIALTKSM 35 (79)
Q Consensus 7 ~~~qiaafL~al~~kGet~~Ei~g~~~am 35 (79)
.++++..-+-..+..|.|++||......+
T Consensus 69 c~~cl~~H~~~a~~~G~t~~ei~e~~~~~ 97 (125)
T 2af7_A 69 ADDQLKSHVRGALNAGCSKDEIIEVMIQM 97 (125)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 35677777777788999999998776544
No 93
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=20.15 E-value=1.3e+02 Score=17.71 Aligned_cols=26 Identities=8% Similarity=0.022 Sum_probs=15.1
Q ss_pred CCCCChHHHHHHHHHHHhcCCCHHHHHHH
Q psy1333 3 TQSDTNNVPRAMLMAMFINGLTNEETIAL 31 (79)
Q Consensus 3 ~g~~~~~qiaafL~al~~kGet~~Ei~g~ 31 (79)
+|.++-.|+..+|.. -|.+.+|+..+
T Consensus 28 dG~Is~~el~~~l~~---~gl~~~el~~i 53 (106)
T 1eh2_A 28 NGFLSGDKVKPVLLN---SKLPVDILGRV 53 (106)
T ss_dssp SSCCBHHHHHHHHHT---TTCCHHHHHHH
T ss_pred CCeEcHHHHHHHHHH---cCCCHHHHHHH
Confidence 466666666666643 25666665543
Done!