RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1333
(79 letters)
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase;
pyrimidine-nucleoside phosphorylase, structural
genomics; 1.80A {Thermus thermophilus}
Length = 423
Score = 109 bits (274), Expect = 2e-30
Identities = 34/65 (52%), Positives = 42/65 (64%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGVGDKVSIPLVPALA 72
A LMA F+ GL EET+ LT++M SG+ L VDKHS+GGVGDKVS+ + P LA
Sbjct: 40 AWLMAAFLRGLDPEETLWLTETMARSGKVLDLSGLPHPVDKHSSGGVGDKVSLVVGPILA 99
Query: 73 ACGLK 77
A G
Sbjct: 100 ASGCT 104
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain
movement, transferase; HET: MES; 2.10A {Geobacillus
stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Length = 433
Score = 109 bits (274), Expect = 2e-30
Identities = 33/66 (50%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGP-EGIVVDKHSTGGVGDKVSIPLVPAL 71
A+ MA++ G+T EET ALT +MV SGE L G+ VDKHSTGGVGD ++ L P +
Sbjct: 40 ALAMAIYFRGMTEEETAALTMAMVQSGEMLDLSSIRGVKVDKHSTGGVGDTTTLVLGPLV 99
Query: 72 AACGLK 77
A+ G+
Sbjct: 100 ASVGVP 105
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics,
glycosyltransferase, transferase; HET: MSE THM; 1.94A
{Staphylococcus aureus}
Length = 436
Score = 109 bits (274), Expect = 2e-30
Identities = 26/66 (39%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGP-EGIVVDKHSTGGVGDKVSIPLVPAL 71
++ MA++ + ++E +ALT +MV+SG+ + +G+ VDKHSTGGVGD ++ L P +
Sbjct: 43 SLAMAIYFQDMNDDERVALTMAMVNSGDMIDLSDIKGVKVDKHSTGGVGDTTTLVLAPLV 102
Query: 72 AACGLK 77
AA +
Sbjct: 103 AAVDVP 108
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase,
chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens}
SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A
2j0f_A
Length = 474
Score = 108 bits (272), Expect = 5e-30
Identities = 38/67 (56%), Positives = 47/67 (70%), Gaps = 2/67 (2%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSW--GPEGIVVDKHSTGGVGDKVSIPLVPA 70
AMLMA+ + G+ EET LT+++ SG+ L W +VDKHSTGGVGDKVS+ L PA
Sbjct: 67 AMLMAIRLRGMDLEETSVLTQALAQSGQQLEWPEAWRQQLVDKHSTGGVGDKVSLVLAPA 126
Query: 71 LAACGLK 77
LAACG K
Sbjct: 127 LAACGCK 133
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A
{Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB:
1azy_A 1tpt_A 1otp_A
Length = 440
Score = 107 bits (270), Expect = 7e-30
Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSW---GPEGIVVDKHSTGGVGDKVSIPLVP 69
A+ M +F + +T E ++LT +M DSG L W G +VDKHSTGGVGD S+ L P
Sbjct: 41 ALAMTIFFHDMTMPERVSLTMAMRDSGTVLDWKSLHLNGPIVDKHSTGGVGDVTSLMLGP 100
Query: 70 ALAACGLK 77
+AACG
Sbjct: 101 MVAACGGY 108
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A
{Thermus scotoductus} PDB: 3hf3_A*
Length = 349
Score = 25.6 bits (57), Expect = 1.7
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 21 NGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGVGDKVSIPLVPA 70
G + E+T+A + + + G L + S+GGV +V IPL P
Sbjct: 234 GGWSLEDTLAFARRLKELGVDL------LDC---SSGGVVLRVRIPLAPG 274
>2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo
4YL)-propionic acid, PSI-2 community, structural
genomics, structure initiative; HET: DI6; 1.97A
{Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A*
Length = 416
Score = 25.6 bits (56), Expect = 1.8
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 5 SDTNNVPRAMLMAMFINGLTNEETIA 30
+ ++ AM MA + GLT E +A
Sbjct: 323 APIVSLRMAMNMACTLFGLTPVEAMA 348
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 25.3 bits (56), Expect = 2.2
Identities = 9/59 (15%), Positives = 17/59 (28%), Gaps = 17/59 (28%)
Query: 19 FINGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGVGDKVSIPLVPALAACGLK 77
+ +E T+ K G +GI + + + A G+K
Sbjct: 29 YHTEFLDENTVEWAK-----------GFDGINS------LQTTPYAAGVFEKMHAYGIK 70
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN;
1.03A {Pseudomonas putida} PDB: 3l5m_A* 3n19_B* 3n16_A*
3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A*
2h8x_A*
Length = 363
Score = 24.8 bits (55), Expect = 3.2
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 9/50 (18%)
Query: 21 NGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGVGDKVSIPLVPA 70
+ T EE+I L + G L + V S G +IP PA
Sbjct: 241 DEQTLEESIELARRFKAGGLDL------LSV---SVGFTIPDTNIPWGPA 281
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics,
NPPSFA, national project O structural and functional
analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1
c.27.1.1 PDB: 1v8g_A
Length = 329
Score = 24.4 bits (54), Expect = 4.5
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGVGDK-VSIPLVPAL 71
+L+A+ + G E A+ ++M ++ L ++D TGG G +++ + AL
Sbjct: 37 GLLVALSLRGERPHEIAAMARAMREAARPLR-VHRRPLLDIVGTGGDGKGLMNLSTLAAL 95
Query: 72 --AACGLK 77
AA G+
Sbjct: 96 VAAAGGVA 103
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold,
nucleotide binding fold; 1.86A {Pectobacterium
carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A
Length = 345
Score = 24.0 bits (53), Expect = 5.6
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGVG 60
A L++M + G EE +++ + P+ D TGG G
Sbjct: 50 AALISMKMRGERPEEIAGAASALLADAQPFP-RPDYDFADIVGTGGDG 96
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 24.1 bits (53), Expect = 5.9
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 17/59 (28%)
Query: 19 FINGLTNEETIALTKSMVDSGETLSWGPEGIVVDKHSTGGVGDKVSIPLVPALAACGLK 77
+ + L ET+AL K G +G+VV + ALA G+
Sbjct: 31 YTDKLLTPETVALAK-----------GADGVVV------YQQLDYIAETLQALADNGIT 72
>2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate,
product-bound, structural genomics, protein STRU
initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens
str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A
Length = 419
Score = 23.7 bits (51), Expect = 8.3
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 5 SDTNNVPRAMLMAMFINGLTNEETIA 30
S ++ M M + +T EE +
Sbjct: 335 SPLTSLLLTMNMGATLFRMTVEECLT 360
>2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus
subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A
Length = 421
Score = 23.6 bits (51), Expect = 8.9
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 5 SDTNNVPRAMLMAMFINGLTNEETIA 30
S T N+ M +A +T EE
Sbjct: 330 SPTENIQLIMSIAALHLKMTAEEIWH 355
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.130 0.374
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,116,582
Number of extensions: 53435
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 17
Length of query: 79
Length of database: 6,701,793
Length adjustment: 48
Effective length of query: 31
Effective length of database: 5,361,585
Effective search space: 166209135
Effective search space used: 166209135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.4 bits)