RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1333
(79 letters)
>d1uoua2 c.27.1.1 (A:101-373) Thymidine phosphorylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 273
Score = 54.4 bits (130), Expect = 3e-11
Identities = 25/38 (65%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Query: 42 LSW--GPEGIVVDKHSTGGVGDKVSIPLVPALAACGLK 77
L W +VDKHSTGGVGDKVS+ L PALAACG K
Sbjct: 2 LEWPEAWRQQLVDKHSTGGVGDKVSLVLAPALAACGCK 39
>d2tpta2 c.27.1.1 (A:71-335) Thymidine phosphorylase {Escherichia
coli [TaxId: 562]}
Length = 265
Score = 53.6 bits (128), Expect = 6e-11
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 47 EGIVVDKHSTGGVGDKVSIPLVPALAACGLK 77
G +VDKHSTGGVGD S+ L P +AACG
Sbjct: 8 NGPIVDKHSTGGVGDVTSLMLGPMVAACGGY 38
>d1brwa2 c.27.1.1 (A:71-330) Pyrimidine nucleoside phosphorylase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 260
Score = 53.6 bits (128), Expect = 6e-11
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 47 EGIVVDKHSTGGVGDKVSIPLVPALAACGLK 77
G+ VDKHSTGGVGD ++ L P +A+ G+
Sbjct: 5 RGVKVDKHSTGGVGDTTTLVLGPLVASVGVP 35
>d2tpta1 a.46.2.1 (A:1-70) Thymidine phosphorylase {Escherichia
coli [TaxId: 562]}
Length = 70
Score = 44.0 bits (104), Expect = 2e-08
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETL 42
A+ M +F + +T E ++LT +M DSG L
Sbjct: 41 ALAMTIFFHDMTMPERVSLTMAMRDSGTVL 70
>d1uoua1 a.46.2.1 (A:33-100) Thymidine phosphorylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 42.5 bits (100), Expect = 8e-08
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGE 40
AMLMA+ + G+ EET LT+++ SG+
Sbjct: 41 AMLMAIRLRGMDLEETSVLTQALAQSGQ 68
>d1brwa1 a.46.2.1 (A:1-70) Pyrimidine nucleoside phosphorylase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 70
Score = 42.4 bits (100), Expect = 8e-08
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETL 42
A+ MA++ G+T EET ALT +MV SGE L
Sbjct: 40 ALAMAIYFRGMTEEETAALTMAMVQSGEML 69
>d1khda2 c.27.1.1 (A:81-344) Anthranilate
phosphoribosyltransferase (TrpD) {Pectobacterium
carotovorum [TaxId: 554]}
Length = 264
Score = 39.5 bits (91), Expect = 7e-06
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 46 PEGIVVDKHSTGGVGDK---VSIPLVPALAACGLK 77
P+ D TGG G +S A+CG K
Sbjct: 2 PDYDFADIVGTGGDGTNSINISTASAFVAASCGAK 36
>d2elca2 c.27.1.1 (A:66-329) Anthranilate
phosphoribosyltransferase (TrpD) {Thermus thermophilus
[TaxId: 274]}
Length = 264
Score = 38.7 bits (89), Expect = 1e-05
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 50 VVDKHSTGGVGDK---VSIPLVPALAACGLK 77
++D TGG G +S AA G+
Sbjct: 8 LLDIVGTGGDGKGLMNLSTLAALVAAAGGVA 38
>d1o17a1 a.46.2.1 (A:1-70) Anthranilate phosphoribosyltransferase
(TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 70
Score = 36.6 bits (85), Expect = 2e-05
Identities = 6/30 (20%), Positives = 16/30 (53%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETL 42
A+L+A+ + G + E + ++M + +
Sbjct: 40 AILVALRMKGESKNEIVGFARAMRELAIKI 69
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase
(TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Length = 69
Score = 35.9 bits (83), Expect = 3e-05
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 13 AMLMAMFINGLTNEETIALTKSMVDSGETL 42
A L++M + G EE +++ +
Sbjct: 39 AALISMKMRGERPEEIAGAASALLADAQPF 68
>d2bb0a2 c.1.9.17 (A:74-373) Imidazolonepropionase {Bacillus
subtilis [TaxId: 1423]}
Length = 300
Score = 25.3 bits (53), Expect = 0.85
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 5 SDTNNVPRAMLMAMFINGLTNEETIAL 31
S T N+ M +A +T EE
Sbjct: 257 SPTENIQLIMSIAALHLKMTAEEIWHA 283
>d2puza2 c.1.9.17 (A:80-380) Imidazolonepropionase {Agrobacterium
tumefaciens [TaxId: 358]}
Length = 301
Score = 24.5 bits (51), Expect = 2.0
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 5 SDTNNVPRAMLMAMFINGLTNEETIAL 31
S ++ M M + +T EE +
Sbjct: 258 SPLTSLLLTMNMGATLFRMTVEECLTA 284
>d2q09a2 c.1.9.17 (A:66-366) Probable 4-imidazolone-5-propanoate
amidohydrolase GOS_1928421 {Environmental samples}
Length = 301
Score = 24.5 bits (51), Expect = 2.0
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 5 SDTNNVPRAMLMAMFINGLTNEETIAL 31
+ ++ AM MA + GLT E +A
Sbjct: 258 APIVSLRMAMNMACTLFGLTPVEAMAG 284
>d1b1ya_ c.1.8.1 (A:) beta-Amylase {Barley (Hordeum vulgare) [TaxId:
4513]}
Length = 500
Score = 24.0 bits (52), Expect = 2.6
Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
Query: 54 HSTGG-VGDKVSIPL 67
H GG VGD V+IP+
Sbjct: 87 HQCGGNVGDAVNIPI 101
>d1fa2a_ c.1.8.1 (A:) beta-Amylase {Sweet potato (Ipomoea batatas)
[TaxId: 4120]}
Length = 498
Score = 23.6 bits (51), Expect = 2.9
Identities = 9/15 (60%), Positives = 10/15 (66%), Gaps = 1/15 (6%)
Query: 54 HSTGG-VGDKVSIPL 67
H GG VGD V IP+
Sbjct: 94 HQCGGNVGDAVFIPI 108
>d1afsa_ c.1.7.1 (A:) 3-alpha-hydroxysteroid dehydrogenase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 319
Score = 23.8 bits (50), Expect = 3.6
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 2 VTQSDTNNVPRAMLMAMFINGLTNEETIALTKSMVDSGETL 42
V +D N +P + +E I TK +D+G
Sbjct: 8 VALNDGNFIPVLGFGTTVPEKVAKDEVIKATKIAIDNGFRH 48
>d1wdpa1 c.1.8.1 (A:6-495) beta-Amylase {Soybean (Glycine max)
[TaxId: 3847]}
Length = 490
Score = 23.2 bits (50), Expect = 4.2
Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
Query: 54 HSTGG-VGDKVSIPL 67
H GG VGD V+IP+
Sbjct: 88 HQCGGNVGDIVNIPI 102
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.130 0.374
Gapped
Lambda K H
0.267 0.0512 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 257,043
Number of extensions: 8917
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 18
Length of query: 79
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 34
Effective length of database: 1,789,746
Effective search space: 60851364
Effective search space used: 60851364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.4 bits)