BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13330
         (289 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q2FUW3|ASP1_STAA8 Accessory Sec system protein Asp1 OS=Staphylococcus aureus (strain
           NCTC 8325) GN=asp1 PE=3 SV=1
          Length = 517

 Score = 35.4 bits (80), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 13/117 (11%)

Query: 27  NTKESRKDEKFRCFLKNRDDDLYIGVSITAECSTLKTVEKSPER---LHITPVKA-EVVE 82
           N  E+  DE+++  +KN      I  S+  E   +   EK       + ITP +  +   
Sbjct: 257 NRNETVSDEEYQSIVKNAH---LIVDSVQLERDLISHQEKYQRENTMIRITPFETRQSPN 313

Query: 83  PGCQLPQNFSGDWINTANIDADVFIKRVKYMMARLTVDGCQKDYVCFDFVPRHHNVI 139
              QL + F G WI+  + DAD+     + MM RL     Q+DY     + RH N I
Sbjct: 314 ISSQLMETFIGVWIDGMS-DADL-----QQMMQRLVDYIAQEDYYRLILLSRHQNDI 364


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.140    0.445 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,533,941
Number of Sequences: 539616
Number of extensions: 4868832
Number of successful extensions: 11779
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11779
Number of HSP's gapped (non-prelim): 2
length of query: 289
length of database: 191,569,459
effective HSP length: 116
effective length of query: 173
effective length of database: 128,974,003
effective search space: 22312502519
effective search space used: 22312502519
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 61 (28.1 bits)