Query psy13330
Match_columns 289
No_of_seqs 16 out of 18
Neff 2.3
Searched_HMMs 46136
Date Fri Aug 16 16:44:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13330.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13330hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05265 DUF723: Protein of un 44.9 14 0.0003 28.5 1.5 18 174-191 27-44 (60)
2 PLN00054 photosystem I reactio 41.4 11 0.00023 33.2 0.5 11 83-93 91-101 (139)
3 cd00191 TY Thyroglobulin type 35.1 29 0.00062 26.0 1.9 29 223-251 23-55 (66)
4 PF05479 PsaN: Photosystem I r 30.1 25 0.00054 31.0 1.0 14 80-93 87-101 (138)
5 PF08119 Toxin_31: Scorpion ac 30.1 28 0.00061 24.6 1.0 20 213-232 14-33 (37)
6 PF13501 SoxY: Sulfur oxidatio 28.5 46 0.00099 27.4 2.2 32 168-203 47-79 (111)
7 PRK07474 sulfur oxidation prot 24.1 69 0.0015 28.1 2.6 32 168-203 88-120 (154)
8 smart00815 AMA-1 Apical membra 22.4 58 0.0013 30.9 1.9 31 180-211 39-69 (240)
9 PF12946 EGF_MSP1_1: MSP1 EGF 22.2 69 0.0015 22.6 1.8 18 3-20 17-34 (37)
10 PF06477 DUF1091: Protein of u 19.5 32 0.00069 25.1 -0.3 25 167-191 36-61 (81)
No 1
>PF05265 DUF723: Protein of unknown function (DUF723); InterPro: IPR007929 This family contains several uncharacterised proteins from Neisseria meningitidis. These proteins may have a role in DNA binding.
Probab=44.93 E-value=14 Score=28.48 Aligned_cols=18 Identities=39% Similarity=0.942 Sum_probs=14.9
Q ss_pred ccCCceeecccCceeeeE
Q psy13330 174 AKNPVPVRCPIAGKFNFT 191 (289)
Q Consensus 174 a~~P~pi~CPvaGkf~F~ 191 (289)
...|+.|+||+-|-|...
T Consensus 27 ~~~PvtI~CP~HG~~~~s 44 (60)
T PF05265_consen 27 VATPVTIRCPKHGNFTCS 44 (60)
T ss_pred CCCceEEECCCCCcEEec
Confidence 467999999999987654
No 2
>PLN00054 photosystem I reaction center subunit N; Provisional
Probab=41.44 E-value=11 Score=33.22 Aligned_cols=11 Identities=45% Similarity=1.226 Sum_probs=9.7
Q ss_pred CCCCCCCcCcc
Q psy13330 83 PGCQLPQNFSG 93 (289)
Q Consensus 83 pgC~lP~nFsG 93 (289)
--|+||+||+|
T Consensus 91 G~C~FP~Nf~G 101 (139)
T PLN00054 91 GTCKFPENFTG 101 (139)
T ss_pred ccccCCccccc
Confidence 35999999998
No 3
>cd00191 TY Thyroglobulin type I repeats.; The N-terminal region of human thyroglobulin contains 11 type-1 repeats TY repeats are proposed to be inhibitors of cysteine proteases
Probab=35.13 E-value=29 Score=26.02 Aligned_cols=29 Identities=31% Similarity=0.593 Sum_probs=21.0
Q ss_pred ceeecCCC--cEEEEecc--eeeeeecCCCcee
Q psy13330 223 FSVCDTDQ--KEVTIDET--YCLSVDYLGRPVD 251 (289)
Q Consensus 223 ~svCd~dq--K~~~id~~--~ClsvD~~GrPvd 251 (289)
+-.|+.|. +.+|=+.. +||=||..|++|.
T Consensus 23 iP~C~~~G~y~~~QC~~~~g~CwCVd~~G~~i~ 55 (66)
T cd00191 23 VPQCDEDGNYEPVQCHGSTGYCWCVDPDGEEIP 55 (66)
T ss_pred CcccCCCCCEeeeeecCCCCcEEEECCCCcCCC
Confidence 33455544 46666766 9999999999975
No 4
>PF05479 PsaN: Photosystem I reaction centre subunit N (PSAN or PSI-N); InterPro: IPR008796 This family contains several Photosystem I reaction centre subunit N (PSI-N) proteins. The protein has no known function although it is localised in the thylakoid lumen []. PSI-N is a small extrinsic subunit at the lumen side and is very likely involved in the docking of plastocyanin.; GO: 0005516 calmodulin binding, 0015979 photosynthesis, 0009522 photosystem I, 0042651 thylakoid membrane; PDB: 2WSE_N 2WSC_N 2WSF_N 2O01_N.
Probab=30.13 E-value=25 Score=31.01 Aligned_cols=14 Identities=43% Similarity=1.032 Sum_probs=8.9
Q ss_pred ccCC-CCCCCCcCcc
Q psy13330 80 VVEP-GCQLPQNFSG 93 (289)
Q Consensus 80 ~v~p-gC~lP~nFsG 93 (289)
.|+- -|+||.||+|
T Consensus 87 tv~fg~c~fP~n~~g 101 (138)
T PF05479_consen 87 TVQFGTCKFPENFTG 101 (138)
T ss_dssp T--TSTSSSSS-SSS
T ss_pred eeecccccCCccchh
Confidence 3444 4999999987
No 5
>PF08119 Toxin_31: Scorpion acidic alpha-KTx toxin family; InterPro: IPR012635 This entry represents proteins that are acidic alpha-KTx short chain scorpion toxins. These toxins are named parabutoxins, that binds and inhibit voltage-sensitive potassium channels and inhibit the vertebrate potassium channel Kv1.1 with low affinity. Furthermore, they lack the crucial pore-plugging lysine. In addition, the second important residue of the dyad, the hydrophobic residue (Phe or Tyr) is also missing [].; GO: 0019870 potassium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region
Probab=30.09 E-value=28 Score=24.56 Aligned_cols=20 Identities=40% Similarity=0.630 Sum_probs=17.3
Q ss_pred ceeeccccccceeecCCCcE
Q psy13330 213 NLYCKQNISDFSVCDTDQKE 232 (289)
Q Consensus 213 ~i~C~~~iSd~svCd~dqK~ 232 (289)
-||||...-+-.|||.-||-
T Consensus 14 viyckgeeystgvcdgpqkc 33 (37)
T PF08119_consen 14 VIYCKGEEYSTGVCDGPQKC 33 (37)
T ss_pred EEEecCceeccccccCCccc
Confidence 48999998888999999983
No 6
>PF13501 SoxY: Sulfur oxidation protein SoxY; PDB: 2OXG_B 2OX5_B 2OXH_F 2NNF_A 2NNC_B.
Probab=28.48 E-value=46 Score=27.37 Aligned_cols=32 Identities=44% Similarity=0.769 Sum_probs=25.1
Q ss_pred eEEEeeccCCceeecccCceeeeEE-eCCceeeeEee
Q psy13330 168 RYNLFLAKNPVPVRCPIAGKFNFTQ-RGDALFETRIL 203 (289)
Q Consensus 168 ~Yd~fla~~P~pi~CPvaGkf~F~Q-rG~~~f~TrIl 203 (289)
+--+|...||.|. +..|.|+- .|+..|.|||-
T Consensus 47 ~I~l~vd~NP~P~----~a~f~~~p~~~~~~~stRir 79 (111)
T PF13501_consen 47 RIHLFVDKNPSPL----AATFELTPAGGEPYVSTRIR 79 (111)
T ss_dssp EEEEEETTSSSSE----EEEEEE-TTCCEEEEEEEEE
T ss_pred EEEEEecCCCCcE----EEEEEEcCCCCCceeEEEEE
Confidence 4568889999964 67899965 77788999986
No 7
>PRK07474 sulfur oxidation protein SoxY; Provisional
Probab=24.07 E-value=69 Score=28.14 Aligned_cols=32 Identities=34% Similarity=0.491 Sum_probs=25.1
Q ss_pred eEEEeeccCCceeecccCceeeeE-EeCCceeeeEee
Q psy13330 168 RYNLFLAKNPVPVRCPIAGKFNFT-QRGDALFETRIL 203 (289)
Q Consensus 168 ~Yd~fla~~P~pi~CPvaGkf~F~-QrG~~~f~TrIl 203 (289)
+--+|...||.|. +..|.|+ ..|..-|.|||-
T Consensus 88 ~I~l~vd~NP~Pl----~a~f~l~p~~~~~~vstRIR 120 (154)
T PRK07474 88 AIHVFADGNPQPG----VATFHFGPAAGRAEASTRIR 120 (154)
T ss_pred EEEEEECCCCCCE----EEEEEecCCCCCceEEEEEE
Confidence 4568889999975 5789994 466678999986
No 8
>smart00815 AMA-1 Apical membrane antigen 1. Apical membrane antigen 1 (AMA-1) is a Plasmodium asexual blood-stage antigen. It has been suggested that positive selection operates on the AMA-1 gene in regions coding for antigenic sites.
Probab=22.41 E-value=58 Score=30.93 Aligned_cols=31 Identities=35% Similarity=0.458 Sum_probs=25.1
Q ss_pred eecccCceeeeEEeCCceeeeEeeCccccCCC
Q psy13330 180 VRCPIAGKFNFTQRGDALFETRILGGVTLSPR 211 (289)
Q Consensus 180 i~CPvaGkf~F~QrG~~~f~TrIlGGvT~sPr 211 (289)
=+|||=||.-=+|.+++.|-|.|.=|- ++||
T Consensus 39 GkCPV~GK~I~~~n~~~~fl~pv~~~d-~~~~ 69 (240)
T smart00815 39 GKCPVVGKGIILENSDADFLTPVATGD-QSVR 69 (240)
T ss_pred CcCCcccceEEeccCCCccccccccCC-cCcC
Confidence 379999999999999999999987443 3455
No 9
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=22.16 E-value=69 Score=22.62 Aligned_cols=18 Identities=17% Similarity=0.062 Sum_probs=13.6
Q ss_pred cCceEEEEEeeeeeecCC
Q psy13330 3 VKKVVEYSCLGDWFVDKN 20 (289)
Q Consensus 3 ~~~vve~sCLg~Wf~gkn 20 (289)
.+|.+||+||.-|+...+
T Consensus 17 ~dG~eecrCllgyk~~~~ 34 (37)
T PF12946_consen 17 DDGSEECRCLLGYKKVGG 34 (37)
T ss_dssp TTSEEEEEE-TTEEEETT
T ss_pred CCCCEEEEeeCCccccCC
Confidence 359999999999887554
No 10
>PF06477 DUF1091: Protein of unknown function (DUF1091); InterPro: IPR010512 This entry contains a number of proteins from Drosophila melanogaster and other insects. Their function is unknown.
Probab=19.45 E-value=32 Score=25.07 Aligned_cols=25 Identities=20% Similarity=0.533 Sum_probs=16.4
Q ss_pred eeEEEeeccCCceeeccc-CceeeeE
Q psy13330 167 WRYNLFLAKNPVPVRCPI-AGKFNFT 191 (289)
Q Consensus 167 w~Yd~fla~~P~pi~CPv-aGkf~F~ 191 (289)
.-|+.+.+....|..||+ +|.|-+.
T Consensus 36 ~~~~~~~~~sN~~~~CP~~~g~Y~~~ 61 (81)
T PF06477_consen 36 IVYKSLKKYSNLPHTCPFKKGNYYLR 61 (81)
T ss_pred HHHHHHhhccCCCCCCCCCCCEEEEE
Confidence 334555555566778999 7777554
Done!