Query psy13330
Match_columns 289
No_of_seqs 16 out of 18
Neff 2.3
Searched_HMMs 29240
Date Fri Aug 16 16:44:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13330.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13330hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uww_A Endoglucanase; carbohyd 58.1 5.9 0.0002 35.0 2.8 107 86-205 17-156 (191)
2 3ach_A Beta-1,4-endoglucanase; 47.3 8.8 0.0003 34.1 2.2 117 86-214 27-177 (203)
3 3lw5_N Photosystem I-N subunit 47.1 6.2 0.00021 31.1 1.1 14 80-93 34-48 (85)
4 2nnc_A Sulfur covalently-bindi 40.1 14 0.00047 29.9 2.1 32 168-203 60-91 (124)
5 2oxg_Y SOXY protein; immunoglo 39.3 13 0.00045 30.3 1.9 32 168-203 58-90 (124)
6 2wsc_N PSAN, PSI-N, photosyste 37.0 11 0.00037 32.8 1.1 14 80-93 119-133 (170)
7 4f3j_A Complement C1Q tumor ne 31.4 19 0.00066 28.3 1.7 16 179-194 41-56 (148)
8 3h8z_A FragIle X mental retard 30.3 36 0.0012 27.8 3.1 37 245-282 62-103 (128)
9 2jyd_A F5 domain of myelin tra 21.0 26 0.00087 24.9 0.5 16 172-187 2-17 (46)
10 1icf_I Protein (invariant chai 20.3 65 0.0022 23.2 2.6 30 224-253 21-54 (65)
No 1
>1uww_A Endoglucanase; carbohydrate binding module, glycosidase, lectin, cellulose, binding, CBM, hydrolase; HET: MSE; 1.4A {Bacillus akibai} SCOP: b.18.1.23
Probab=58.11 E-value=5.9 Score=34.96 Aligned_cols=107 Identities=21% Similarity=0.362 Sum_probs=64.0
Q ss_pred CCCCcCcc------cceecccCcceEEEcc-------------------------eeEEEEEEeecCcccceEEEEeecC
Q psy13330 86 QLPQNFSG------DWINTANIDADVFIKR-------------------------VKYMMARLTVDGCQKDYVCFDFVPR 134 (289)
Q Consensus 86 ~lP~nFsG------~W~ntan~Da~V~In~-------------------------sr~mmAr~tv~gCq~dymCfdF~pR 134 (289)
.||.+|.- +|..++-..+.+.|.+ -|.|.-....+-=..+|++||||=.
T Consensus 17 tLPS~FEdgTRQGWdW~~~SGVktaLTIeeANgS~AlSWe~~YPEvKpsD~WAsAPRl~l~~~~~tRg~n~YlaFDfYl~ 96 (191)
T 1uww_A 17 VLPSVFEDGTRQGWDWAGESGVKTALTIEEANGSNALSWEFGYPEVKPSDNWATAPRLDFWKSDLVRGENDYVTFDFYLD 96 (191)
T ss_dssp CSSBCCCSSSCTTEEECTTCSCCCCCEEEEETTEEEEEEEEECCSSCCSSTTTTCCEEEEECTTCCCTTCCEEEEEEEEE
T ss_pred cCCccccccccccccccCCCCccceEEEEecCCcceeEEEEeCCcccCCcccccCceeEEeccccccccCceEEEEEEEC
Confidence 58999964 8999999999999965 3444444444444789999999953
Q ss_pred CceeEEEecChhhhhhhhh--cccccccccCccceeEEEeeccCCceeecccCceeeeEEeCCceeeeEeeCc
Q psy13330 135 HHNVIRYRKGIAVIKDNFH--TVCSYVQFKNDNQWRYNLFLAKNPVPVRCPIAGKFNFTQRGDALFETRILGG 205 (289)
Q Consensus 135 hhnVIryr~G~~~i~~~f~--~vCsw~~F~n~~~w~Yd~fla~~P~pi~CPvaGkf~F~QrG~~~f~TrIlGG 205 (289)
-+|--+|.=-|-=.|. +.=-|.|=+.. |++=|.+=-. -+ -..|.|.|. ++|+-|-..+
T Consensus 97 ---P~rAs~G~i~I~l~f~PP~lGyWaqa~~~----f~I~l~~L~~-a~-t~DgLYh~~----v~~dl~ki~~ 156 (191)
T 1uww_A 97 ---PVRATEGAMNINLVFQPPTNGYWVQAPKT----YTINFDELEE-AN-QVNGLYHYE----VKINVRDITN 156 (191)
T ss_dssp ---EEECCSCEEEEEEEECCGGGTTCEECSSC----EEEEGGGGGG-SC-EETTEEEEE----EEEECTTCTT
T ss_pred ---ccccCCceEEEEEEecCCCCccceeCcce----eeccHHHhhh-cc-CCCceEEEE----EEEchhhhcc
Confidence 3466666533321121 22235554433 5554443222 12 457888885 5566554443
No 2
>3ach_A Beta-1,4-endoglucanase; beta-jellyroll, cellulose-binding domain, hydrolase; HET: BGC; 1.40A {Clostridium josui} PDB: 3acf_A* 3acg_A* 3aci_A*
Probab=47.33 E-value=8.8 Score=34.14 Aligned_cols=117 Identities=22% Similarity=0.406 Sum_probs=68.5
Q ss_pred CCCCcCcc------cceecccCcceEEEcc---e----------------------eEEEEEEeecCcccceEEEEeecC
Q psy13330 86 QLPQNFSG------DWINTANIDADVFIKR---V----------------------KYMMARLTVDGCQKDYVCFDFVPR 134 (289)
Q Consensus 86 ~lP~nFsG------~W~ntan~Da~V~In~---s----------------------r~mmAr~tv~gCq~dymCfdF~pR 134 (289)
.||..|.. +|..++-..+.+.|.+ | |.|.-...++-=...|++||||=.
T Consensus 27 tLPS~FED~TRQGWdWd~~SGVk~aLTIeeANgS~AlSwe~~YPEvKpsD~WAsApRl~l~~~~~tRg~n~YlaFDfYl~ 106 (203)
T 3ach_A 27 TLPSTFEDSTRQGWAWDATSGVQSALTIKDANESKAISWEVKYPEVKPVDGWASAPRIMLGNVNTTRGNNKYLTFDFYLK 106 (203)
T ss_dssp CSSBCCTTSSCTTEEECTTCSCCSCCEEEEETTEEEEEEEEECCSSCCSSTTTTSCEEEETTCCBCCTTCSEEEEEEEEE
T ss_pred cCCCcccccccccccccCCCCccceeEEeecCCcceeEEEEeCCcccCCcccccCceeEEecccceeccCcEEEEEEEEC
Confidence 58999964 8999999999999955 3 333333344444778999999953
Q ss_pred CceeEEEecChhhhhhhhh--cccccccccCccceeEEEeeccCCceeecccCceeeeEEeCCceeee-EeeCccccCCC
Q psy13330 135 HHNVIRYRKGIAVIKDNFH--TVCSYVQFKNDNQWRYNLFLAKNPVPVRCPIAGKFNFTQRGDALFET-RILGGVTLSPR 211 (289)
Q Consensus 135 hhnVIryr~G~~~i~~~f~--~vCsw~~F~n~~~w~Yd~fla~~P~pi~CPvaGkf~F~QrG~~~f~T-rIlGGvT~sPr 211 (289)
-+|--+|.=-|-=.|. +.=-|.|-+.. |++=|++=-. -+=-..|.|.|. ++|+- +|-||-.+.|-
T Consensus 107 ---P~rAskG~i~I~laf~PP~lGyWAqa~~~----f~IdL~~L~~-a~~t~DgLYh~~----v~~dl~ki~~~Kvl~~d 174 (203)
T 3ach_A 107 ---PTQASKGSLTISLAFAPPSLGFWAQATGD----VNIPLSSLSK-MKKTTDGLYHFQ----VKYDLDKINDGKVLTAN 174 (203)
T ss_dssp ---EEECCSSEEEEEEEEECGGGTTCEEBSCC----EEEEGGGGGG-SCCCTTSCEEEE----EEEETTCBGGGCCCCTT
T ss_pred ---ccccCCceEEEEEEecCCCCccceeCcce----ecccHHHhhh-cccCCCccEEEE----EEEehhhccCCcccCCC
Confidence 3466666533321121 12234444332 4444433211 112236888885 45654 46677777765
Q ss_pred Cce
Q psy13330 212 PNL 214 (289)
Q Consensus 212 p~i 214 (289)
-.+
T Consensus 175 T~L 177 (203)
T 3ach_A 175 TVL 177 (203)
T ss_dssp CCB
T ss_pred cee
Confidence 443
No 3
>3lw5_N Photosystem I-N subunit, photosystem I reaction center subunit IX; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CLA PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_N*
Probab=47.07 E-value=6.2 Score=31.06 Aligned_cols=14 Identities=50% Similarity=1.113 Sum_probs=10.9
Q ss_pred ccCC-CCCCCCcCcc
Q psy13330 80 VVEP-GCQLPQNFSG 93 (289)
Q Consensus 80 ~v~p-gC~lP~nFsG 93 (289)
.|+- -|+||+||.|
T Consensus 34 TV~~G~C~FP~Nf~G 48 (85)
T 3lw5_N 34 TVEFGSCKFPENFTG 48 (85)
T ss_dssp SCCCSCSSCCSCCSC
T ss_pred EeecccccCCccccc
Confidence 3443 5999999998
No 4
>2nnc_A Sulfur covalently-binding protein; sulfur binding protein, SOXY, beta sandwich, green sulfur BA ligand binding protein; 2.14A {Chlorobium limicola} PDB: 2nnf_A
Probab=40.09 E-value=14 Score=29.91 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=27.1
Q ss_pred eEEEeeccCCceeecccCceeeeEEeCCceeeeEee
Q psy13330 168 RYNLFLAKNPVPVRCPIAGKFNFTQRGDALFETRIL 203 (289)
Q Consensus 168 ~Yd~fla~~P~pi~CPvaGkf~F~QrG~~~f~TrIl 203 (289)
+--+|...||.| ++..|.|+-.|+..|.|||-
T Consensus 60 ~I~l~vd~NP~P----~~a~f~~~p~~~~~~stRir 91 (124)
T 2nnc_A 60 NISIFTPANFSP----MVASFDVLPRMKPEVSLRMR 91 (124)
T ss_dssp EEEEECTTSSSC----EEEEEEECTTSCCEEEEEEE
T ss_pred EEEEEECCCCCC----EEEEEEECCCCceeEEEEEE
Confidence 456888999996 56799999889999999986
No 5
>2oxg_Y SOXY protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2oxh_Y* 2ox5_Y*
Probab=39.33 E-value=13 Score=30.26 Aligned_cols=32 Identities=38% Similarity=0.470 Sum_probs=28.0
Q ss_pred eEEEeeccCCceeecccCceeeeEE-eCCceeeeEee
Q psy13330 168 RYNLFLAKNPVPVRCPIAGKFNFTQ-RGDALFETRIL 203 (289)
Q Consensus 168 ~Yd~fla~~P~pi~CPvaGkf~F~Q-rG~~~f~TrIl 203 (289)
+--+|+..||.| ++..|.|+- .|+..|.|||-
T Consensus 58 ~I~l~vd~NP~P----~va~F~~~p~~~~~~~stRIR 90 (124)
T 2oxg_Y 58 AIMLLAAGNPEP----AVATFNFGPAAADQRAATRIR 90 (124)
T ss_dssp EEEEEETTSSSC----EEEEEEECTTEEEEEEEEEEC
T ss_pred EEEEEECCCCCC----EEEEEEeCCcccceeEEEEEE
Confidence 777899999996 567999998 89999999996
No 6
>2wsc_N PSAN, PSI-N, photosystem I-N subunit; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Phaseolus vulgaris} PDB: 2wse_N* 2wsf_N*
Probab=37.01 E-value=11 Score=32.75 Aligned_cols=14 Identities=50% Similarity=1.113 Sum_probs=10.9
Q ss_pred ccCC-CCCCCCcCcc
Q psy13330 80 VVEP-GCQLPQNFSG 93 (289)
Q Consensus 80 ~v~p-gC~lP~nFsG 93 (289)
.|+- -|+||+||.|
T Consensus 119 TV~~GtCkFP~Nf~G 133 (170)
T 2wsc_N 119 TVEFGSCKFPENFTG 133 (170)
T ss_dssp TCCCSCSSCCSCCSC
T ss_pred eeecccccCCccccc
Confidence 4444 4999999987
No 7
>4f3j_A Complement C1Q tumor necrosis factor-related PROT; late-onset retinal macular degeneration, L-ORMD, L-ORD, AMD, related macular degeneration; 1.34A {Homo sapiens}
Probab=31.42 E-value=19 Score=28.28 Aligned_cols=16 Identities=19% Similarity=0.621 Sum_probs=13.2
Q ss_pred eeecccCceeeeEEeC
Q psy13330 179 PVRCPIAGKFNFTQRG 194 (289)
Q Consensus 179 pi~CPvaGkf~F~QrG 194 (289)
-..|||+|+|-|+=.+
T Consensus 41 ~FTaPv~G~Y~Fs~~~ 56 (148)
T 4f3j_A 41 KFTCQVPGVYYFAVHA 56 (148)
T ss_dssp EEECCSCEEEEEEEEE
T ss_pred eEECCcceEEEEEEEE
Confidence 4899999999997544
No 8
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=30.27 E-value=36 Score=27.78 Aligned_cols=37 Identities=27% Similarity=0.653 Sum_probs=26.3
Q ss_pred cCCCceeeecCCCCceeEeeeecccceee-----eeeecCCCc
Q psy13330 245 YLGRPVDIYSDPDYRMKCIGFWKENLKSY-----LITYDELDP 282 (289)
Q Consensus 245 ~~GrPvdiYs~~d~~~~Cig~w~en~ksy-----lityd~~dp 282 (289)
..|+.|++|+..+-.-.| |.|.--+++. +|.|+.+|+
T Consensus 62 ~~gd~VEV~~~~~d~ep~-gWw~a~I~~~kg~f~~V~y~~~~~ 103 (128)
T 3h8z_A 62 TEGDEVEVYSRANEQEPC-GWWLARVRMMKGDFYVIEYAACDA 103 (128)
T ss_dssp CTTCEEEEEECC---CCC-EEEEEEEEEEETTEEEEEETTC--
T ss_pred CCCCEEEEEecCCCCCcC-ccEEEEEEEeeCCEEEEEEcCCCC
Confidence 479999999976555444 8898887775 999999884
No 9
>2jyd_A F5 domain of myelin transcription factor 1; zinc-finger, MYT1, alternative splicing, developmental protein, differentiation, DNA-binding; NMR {Mus musculus}
Probab=21.00 E-value=26 Score=24.86 Aligned_cols=16 Identities=25% Similarity=0.627 Sum_probs=13.7
Q ss_pred eeccCCceeecccCce
Q psy13330 172 FLAKNPVPVRCPIAGK 187 (289)
Q Consensus 172 fla~~P~pi~CPvaGk 187 (289)
+||.++++.+||..|=
T Consensus 2 ~~~~~~~~~~CPtpGC 17 (46)
T 2jyd_A 2 SMAAHSADLKCPTPGC 17 (46)
T ss_dssp CSCBTTBTTSCSCSSC
T ss_pred cccccccCCcCCCCCc
Confidence 5788999999999873
No 10
>1icf_I Protein (invariant chain); cysteine proteinase, cathepsin, MHC class II, invariant CHAI thyroglobulin type-1 domain, hydrolase; HET: NAG; 2.00A {Homo sapiens} SCOP: g.28.1.1 PDB: 1l3h_A
Probab=20.33 E-value=65 Score=23.22 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=21.4
Q ss_pred eeecCCC--cEEEEe--cceeeeeecCCCceeee
Q psy13330 224 SVCDTDQ--KEVTID--ETYCLSVDYLGRPVDIY 253 (289)
Q Consensus 224 svCd~dq--K~~~id--~~~ClsvD~~GrPvdiY 253 (289)
-.||.+. +.+|-+ ..+||=||..|++|.--
T Consensus 21 P~Cd~~G~y~~~QC~~~~g~CWCVd~~G~~i~gt 54 (65)
T 1icf_I 21 PKCDENGNYLPLQCYGSIGYCWCVFPNGTEVPNT 54 (65)
T ss_dssp CCBCTTSCBCSEEEETTTTEEEEBCTTSCBCTTC
T ss_pred cccCCCCCccCeEECCCCCeEEEECCCCCCCCCC
Confidence 3465544 567777 46899999999987543
Done!