Query psy13330
Match_columns 289
No_of_seqs 16 out of 18
Neff 2.3
Searched_HMMs 13730
Date Fri Aug 16 16:44:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13330.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13330hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pk6a_ b.22.1.1 (A:) Compleme 42.5 4.9 0.00035 28.4 1.7 17 179-195 39-55 (133)
2 d1gr3a_ b.22.1.1 (A:) Collagen 41.7 5.1 0.00037 28.5 1.7 15 179-193 40-54 (132)
3 d1pk6b_ b.22.1.1 (B:) Compleme 41.6 5.1 0.00037 28.4 1.7 15 178-192 40-54 (132)
4 d1c3ha_ b.22.1.1 (A:) 30 kDa a 41.4 5.1 0.00037 29.2 1.7 14 179-192 42-55 (137)
5 d1o91a_ b.22.1.1 (A:) Collagen 40.3 5.5 0.0004 28.6 1.7 17 178-194 38-54 (131)
6 d1pk6c_ b.22.1.1 (C:) Compleme 36.7 6.8 0.00049 28.0 1.7 16 178-193 40-55 (129)
7 d1b9wa1 g.3.11.4 (A:1-45) Mero 27.5 13 0.00097 24.7 1.7 19 3-21 22-40 (45)
8 d2gc9a1 b.60.1.6 (A:1-178) P-c 22.6 38 0.0028 27.7 4.0 41 165-208 22-66 (178)
9 d1ob1c1 g.3.11.4 (C:1-45) Mero 17.0 24 0.0018 23.4 1.3 20 2-21 21-40 (45)
10 d1wgva_ b.15.1.4 (A:) NudC dom 15.3 94 0.0069 21.7 4.4 67 176-244 10-79 (124)
No 1
>d1pk6a_ b.22.1.1 (A:) Complement c1q globular head, A chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.50 E-value=4.9 Score=28.36 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=14.0
Q ss_pred eeecccCceeeeEEeCC
Q psy13330 179 PVRCPIAGKFNFTQRGD 195 (289)
Q Consensus 179 pi~CPvaGkf~F~QrG~ 195 (289)
-..|||+|+|.|+-...
T Consensus 39 ~FTaPv~G~Y~f~~~~~ 55 (133)
T d1pk6a_ 39 RFVCTVPGYYYFTFQVL 55 (133)
T ss_dssp EEECCSCEEEEEEEEEE
T ss_pred EEEeeEcccEEEEEEEE
Confidence 58899999999986544
No 2
>d1gr3a_ b.22.1.1 (A:) Collagen NC1 trimerisation domain {Human (Homo sapiens), isoform X [TaxId: 9606]}
Probab=41.69 E-value=5.1 Score=28.49 Aligned_cols=15 Identities=27% Similarity=0.634 Sum_probs=12.5
Q ss_pred eeecccCceeeeEEe
Q psy13330 179 PVRCPIAGKFNFTQR 193 (289)
Q Consensus 179 pi~CPvaGkf~F~Qr 193 (289)
-..|||+|+|-|+=.
T Consensus 40 ~FTaPv~G~Y~F~~~ 54 (132)
T d1gr3a_ 40 IFTCQIPGIYYFSYH 54 (132)
T ss_dssp EEECSSCEEEEEEEE
T ss_pred EEEeeEccEEEEEEE
Confidence 589999999999643
No 3
>d1pk6b_ b.22.1.1 (B:) Complement c1q globular head, B chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.62 E-value=5.1 Score=28.39 Aligned_cols=15 Identities=27% Similarity=0.585 Sum_probs=12.5
Q ss_pred ceeecccCceeeeEE
Q psy13330 178 VPVRCPIAGKFNFTQ 192 (289)
Q Consensus 178 ~pi~CPvaGkf~F~Q 192 (289)
--+.|||+|+|-|.=
T Consensus 40 g~FTaPv~G~Y~F~~ 54 (132)
T d1pk6b_ 40 GKFTCKVPGLYYFTY 54 (132)
T ss_dssp TEEECSSCEEEEEEE
T ss_pred CeEEcccCcEEEEEE
Confidence 458999999998863
No 4
>d1c3ha_ b.22.1.1 (A:) 30 kDa adipocyte complement-related protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=41.44 E-value=5.1 Score=29.21 Aligned_cols=14 Identities=29% Similarity=0.657 Sum_probs=12.0
Q ss_pred eeecccCceeeeEE
Q psy13330 179 PVRCPIAGKFNFTQ 192 (289)
Q Consensus 179 pi~CPvaGkf~F~Q 192 (289)
-..|||+|+|-|.=
T Consensus 42 ~FTaPv~G~Y~F~~ 55 (137)
T d1c3ha_ 42 KFYCNIPGLYYFSY 55 (137)
T ss_dssp EEECCSCEEEEEEE
T ss_pred EEEeCcCCEEEEEE
Confidence 48999999998864
No 5
>d1o91a_ b.22.1.1 (A:) Collagen NC1 trimerisation domain {Mouse (Mus musculus), isoform VIII [TaxId: 10090]}
Probab=40.33 E-value=5.5 Score=28.55 Aligned_cols=17 Identities=18% Similarity=0.397 Sum_probs=13.3
Q ss_pred ceeecccCceeeeEEeC
Q psy13330 178 VPVRCPIAGKFNFTQRG 194 (289)
Q Consensus 178 ~pi~CPvaGkf~F~QrG 194 (289)
--..|||+|+|-|.=..
T Consensus 38 g~FTaPvaG~Y~f~~~~ 54 (131)
T d1o91a_ 38 GIFTCEVPGVYYFAYHV 54 (131)
T ss_dssp TEEECCSCEEEEEEEEE
T ss_pred CEEEcccceEEEEEEEE
Confidence 35789999999997433
No 6
>d1pk6c_ b.22.1.1 (C:) Complement c1q globular head, C chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.70 E-value=6.8 Score=27.96 Aligned_cols=16 Identities=19% Similarity=0.509 Sum_probs=12.9
Q ss_pred ceeecccCceeeeEEe
Q psy13330 178 VPVRCPIAGKFNFTQR 193 (289)
Q Consensus 178 ~pi~CPvaGkf~F~Qr 193 (289)
--..|||+|+|-|.=.
T Consensus 40 g~FTaPv~G~Y~F~~~ 55 (129)
T d1pk6c_ 40 GKFTCKVPGLYYFVYH 55 (129)
T ss_dssp TEEECSSCEEEEEEEE
T ss_pred CEEECCcCCEEEEEEE
Confidence 3589999999988643
No 7
>d1b9wa1 g.3.11.4 (A:1-45) Merozoite surface protein 1 (MSP-1) {Malaria parasite (Plasmodium cynomolgi) [TaxId: 5827]}
Probab=27.49 E-value=13 Score=24.68 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=15.6
Q ss_pred cCceEEEEEeeeeeecCCc
Q psy13330 3 VKKVVEYSCLGDWFVDKNH 21 (289)
Q Consensus 3 ~~~vve~sCLg~Wf~gknh 21 (289)
.+|.+||+||=..+..++.
T Consensus 22 ~dg~EEwRClL~fK~~~~~ 40 (45)
T d1b9wa1 22 LDGTEEWRCLLYFKEDAGK 40 (45)
T ss_dssp TTSCEEEEECTTEEEETTE
T ss_pred cCCCeeEEEEeeeeccCCE
Confidence 6899999999888876665
No 8
>d2gc9a1 b.60.1.6 (A:1-178) P-coumaric acid decarboxylase, pdc {Lactobacillus plantarum [TaxId: 1590]}
Probab=22.58 E-value=38 Score=27.67 Aligned_cols=41 Identities=17% Similarity=0.319 Sum_probs=30.9
Q ss_pred cceeEEEeeccCCce----eecccCceeeeEEeCCceeeeEeeCcccc
Q psy13330 165 NQWRYNLFLAKNPVP----VRCPIAGKFNFTQRGDALFETRILGGVTL 208 (289)
Q Consensus 165 ~~w~Yd~fla~~P~p----i~CPvaGkf~F~QrG~~~f~TrIlGGvT~ 208 (289)
+.|+|++.+.+.-.- +-=||||..++.|.- +..|+.||+-.
T Consensus 22 ngW~YE~y~kN~~tIdYrIHgG~vaGRwv~dq~~---~~~~~~~~l~k 66 (178)
T d2gc9a1 22 NGWEYEWYAKNDHTVDYRIHGGMVAGRWVTDQKA---DIVMLTEGIYK 66 (178)
T ss_dssp TSCEEEEEEEETTEEEEEECSSTTTTCEEEEEEC---EEEEEETTEEE
T ss_pred CCcEEEEEEecCCEEEEEEecCcccCceecceEE---EEEEEcCCeEE
Confidence 459999999876432 346999999998865 67788888653
No 9
>d1ob1c1 g.3.11.4 (C:1-45) Merozoite surface protein 1 (MSP-1) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=17.02 E-value=24 Score=23.36 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=14.7
Q ss_pred ccCceEEEEEeeeeeecCCc
Q psy13330 2 RVKKVVEYSCLGDWFVDKNH 21 (289)
Q Consensus 2 ~~~~vve~sCLg~Wf~gknh 21 (289)
.++|.+||+||=..+-..+.
T Consensus 21 yldg~EEwrCLL~fKk~~~k 40 (45)
T d1ob1c1 21 HLDEREECKCLLNYKQEGDK 40 (45)
T ss_dssp CTTSCCEEEECTTEEEETTE
T ss_pred ecCCCeeeeeeeeecccCCC
Confidence 36899999999776655443
No 10
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.30 E-value=94 Score=21.70 Aligned_cols=67 Identities=7% Similarity=0.130 Sum_probs=38.5
Q ss_pred CCceeecccCceeeeEEeCCc-eeeeEeeCccccCCCCceeecccc--ccceeecCCCcEEEEecceeeeee
Q psy13330 176 NPVPVRCPIAGKFNFTQRGDA-LFETRILGGVTLSPRPNLYCKQNI--SDFSVCDTDQKEVTIDETYCLSVD 244 (289)
Q Consensus 176 ~P~pi~CPvaGkf~F~QrG~~-~f~TrIlGGvT~sPrp~i~C~~~i--Sd~svCd~dqK~~~id~~~ClsvD 244 (289)
+|...+=....+|...|..+. .-.-.++.|+|.. -+|.|.-.. -.+++.....++..++.+.+-.+|
T Consensus 10 ~~~~~nG~~~~~Y~W~Qt~~~V~i~i~lp~~~~k~--kdv~v~~~~~~l~v~v~~~~~~~~~l~g~L~~~I~ 79 (124)
T d1wgva_ 10 NPDSYNGAVRENYTWSQDYTDLEVRVPVPKHVVKG--KQVSVALSSSSIRVAMLEENGERVLMEGKLTHKIN 79 (124)
T ss_dssp CSSSSSSBCCSSCEEEEETTEEEEEEECCTTCCSG--GGEEEEECSSEEEEEEECSSSEEEEEEEEBSSCBC
T ss_pred CCCCcCCcCCCCeEEEeECCEEEEEEEeCCCCcch--hhEEEEEEeCEEEEEEeccCCcceEEeCcccCccc
Confidence 444444445668999999993 3334566776632 255554443 344556666666666655444444
Done!