RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13330
         (289 letters)



>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 35.9 bits (82), Expect = 0.006
 Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 15/43 (34%)

Query: 12  LGDWF------VDKNHFFAVANTKESRKDEKFRCFLKNRDDDL 48
           L +W       V+KN          +R  +K   F +  D D+
Sbjct: 120 LEEWNQRQSEQVEKNK-------INNRIADK--AFYQQPDADI 153


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 30.2 bits (67), Expect = 0.83
 Identities = 27/205 (13%), Positives = 59/205 (28%), Gaps = 49/205 (23%)

Query: 104 DVFIKRVKYMMARLTVDGCQKDYVCFDFVPRHHNVIRYRKGIAVIKDNFHTVCSYVQFKN 163
              + + + M+ +   +  + +Y    F+    + I+  +     +        Y++ + 
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINY---KFL---MSPIKTEQ-----RQPSMMTRMYIEQR- 116

Query: 164 DNQWRYNLFLAKNPVPVRCPIAGKFNFTQRGDALFETRILGGVTL--------SPRPNLY 215
           D  +  N   AK  V  R        + +   AL E R    V +        +      
Sbjct: 117 DRLYNDNQVFAKYNVS-RLQP-----YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170

Query: 216 CK----QNISDFSV-------CDTDQKEV--------TIDETYCLSVDYLGRPVDIYSDP 256
           C     Q   DF +       C++ +  +         ID  +    D+           
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 257 DYRMKCIGFWKENLKSYLITYDELD 281
              ++ +   K      L+    L 
Sbjct: 231 QAELRRLLKSKPYENCLLV----LL 251


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.9 bits (64), Expect = 2.9
 Identities = 32/201 (15%), Positives = 51/201 (25%), Gaps = 82/201 (40%)

Query: 135 HHNVIRYRKGIAVIKDNFHTVCSYVQFKNDNQWRYNLFLAKNPVPVR---------CPI- 184
            H  + +   + V       + S  Q +         F    P P            P  
Sbjct: 12  SHGSLEH--VLLV-PTASFFIAS--QLQEQ-------FNKILPEPTEGFAADDEPTTPAE 59

Query: 185 -AGKF-NFT----------QRGDAL------FETRILGGVTLSPRPNLYCKQNISDFSVC 226
             GKF  +           Q    L      FE   L G             +I   +  
Sbjct: 60  LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG------------NDIHALAAK 107

Query: 227 DTDQKEVTIDETYCLSVDY------LGRPVDIYSDPDYRMKCIGFWK----ENLKSYLI- 275
              + + T+ +T  L  +Y        RP D  S+          ++     N +   I 
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS-------ALFRAVGEGNAQLVAIF 160

Query: 276 -------TY-DEL----DPYN 284
                   Y +EL      Y+
Sbjct: 161 GGQGNTDDYFEELRDLYQTYH 181


>3e0k_A Amino-acid acetyltransferase; N-acetylglutamate synthase, structu
           genomics, PSI-2, protein structure initiative; HET: MSE;
           2.52A {Vibrio parahaemolyticus}
          Length = 150

 Score = 27.0 bits (60), Expect = 4.5
 Identities = 13/58 (22%), Positives = 20/58 (34%)

Query: 207 TLSPRPNLYCKQNISDFSVCDTDQKEVTIDETYCLSVDYLGRPVDIYSDPDYRMKCIG 264
            L  R     +Q I  F++ + D   +     Y  S +       +   PDYR    G
Sbjct: 29  ILVRRSREQLEQEIGKFTIIEKDGLIIGCAALYPYSEERKAEMACVAIHPDYRDGNRG 86


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.140    0.445 

Gapped
Lambda     K      H
   0.267   0.0625    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,687,719
Number of extensions: 276173
Number of successful extensions: 565
Number of sequences better than 10.0: 1
Number of HSP's gapped: 563
Number of HSP's successfully gapped: 5
Length of query: 289
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 196
Effective length of database: 4,105,140
Effective search space: 804607440
Effective search space used: 804607440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (26.0 bits)