RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13330
         (289 letters)



>d1zy9a2 c.1.8.13 (A:178-525) Alpha-galactosidase GalA catalytic
           domain {Thermotoga maritima [TaxId: 2336]}
          Length = 348

 Score = 27.0 bits (59), Expect = 2.9
 Identities = 22/173 (12%), Positives = 48/173 (27%), Gaps = 26/173 (15%)

Query: 9   YSCLGDWFVDKNHFFAVANTKESRKDEKFRCFLKNRDDDLYIGVSITAECSTLKTVEKSP 68
              +GDW V +  F +V    +   +  F          ++      +E S +       
Sbjct: 47  EKDIGDWLVTRGDFPSVEEMAKVIAENGFIPG-------IWTAPFSVSETSDV------F 93

Query: 69  ERLHITPVKAEVVEPGCQLPQNFSGDWINTANIDADVFIKRVKYMMARLTVDGCQKDYVC 128
                  VK            N     ++ +  +   ++  +   + ++     + D++ 
Sbjct: 94  NEHPDWVVKENGEPKMAYRNWNKKIYALDLSKDEVLNWLFDLFSSLRKMGYRYFKIDFLF 153

Query: 129 FDFVPRHHN-----VIRYRKGIAVIKDNFH-----TVCSYVQF---KNDNQWR 168
              VP         +  +RKGI  I+           C           +  R
Sbjct: 154 AGAVPGERKKNITPIQAFRKGIETIRKAVGEDSFILGCGSPLLPAVGCVDGMR 206


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.140    0.445 

Gapped
Lambda     K      H
   0.267   0.0453    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,182,206
Number of extensions: 57275
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 7
Length of query: 289
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 205
Effective length of database: 1,254,276
Effective search space: 257126580
Effective search space used: 257126580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.5 bits)