BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13331
         (143 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B1KIC1|LFTR_SHEWM Leucyl/phenylalanyl-tRNA--protein transferase OS=Shewanella woodyi
           (strain ATCC 51908 / MS32) GN=aat PE=3 SV=1
          Length = 236

 Score = 32.7 bits (73), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 65  STLKTVEKSPERLHITPVKAEVVEPGCQLPQNFS-GDWINTANIDADVFINE---THIIE 120
           S LK ++K P R  I    ++V+E GC  P++   G WI     DA + ++E    H IE
Sbjct: 78  SLLKHLKKQPWRYSINHAFSQVIE-GCAAPRSSQDGTWITPEIQDAYLKLHELGKAHSIE 136

Query: 121 TYYPDE 126
            ++ DE
Sbjct: 137 VWHQDE 142


>sp|A6LD45|LON_PARD8 Lon protease OS=Parabacteroides distasonis (strain ATCC 8503 /
          DSM 20701 / NCTC 11152) GN=lon PE=3 SV=1
          Length = 823

 Score = 30.4 bits (67), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 8/62 (12%)

Query: 41 EKFRCFLKNR----DDDLYIGVSITAECST----LKTVEKSPERLHITPVKAEVVEPGCQ 92
          EK R F +N     DD++ I + I  EC       + +EK  + + I P++  V+ PG  
Sbjct: 7  EKTRVFCQNSFDDLDDNIGIVMPILTECDVDEDFTEGIEKVGDTIPILPLRNMVLFPGVA 66

Query: 93 LP 94
          LP
Sbjct: 67 LP 68


>sp|Q6P132|TXB1B_DANRE Tax1-binding protein 1 homolog B OS=Danio rerio GN=tax1bp1b PE=2
           SV=3
          Length = 823

 Score = 29.3 bits (64), Expect = 8.2,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 6/74 (8%)

Query: 5   TGQGLQKVVEYSCLGDWFVDKN-HFFAVANTKESRKDEK--FRCFLKNRDDDLYIGVSIT 61
           T +GLQK  E  CL D     N    A+    ++ KDEK  ++  LKNR+ +      ++
Sbjct: 248 TQKGLQKETELDCLKDRVKKLNLEKEALEGQLKNEKDEKELYKIHLKNRELE---NTKLS 304

Query: 62  AECSTLKTVEKSPE 75
           AE   LK+V+ + E
Sbjct: 305 AELQMLKSVDVNKE 318


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.135    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,272,472
Number of Sequences: 539616
Number of extensions: 2085975
Number of successful extensions: 4389
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 4389
Number of HSP's gapped (non-prelim): 8
length of query: 143
length of database: 191,569,459
effective HSP length: 106
effective length of query: 37
effective length of database: 134,370,163
effective search space: 4971696031
effective search space used: 4971696031
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)