Query psy13331
Match_columns 143
No_of_seqs 13 out of 15
Neff 2.1
Searched_HMMs 46136
Date Fri Aug 16 16:45:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13331.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13331hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00054 photosystem I reactio 61.8 3.2 6.9E-05 33.2 0.5 17 84-100 85-102 (139)
2 PF06159 DUF974: Protein of un 46.5 16 0.00034 29.9 2.2 51 39-93 12-69 (249)
3 PF05479 PsaN: Photosystem I r 46.1 9.7 0.00021 30.4 0.9 17 84-100 85-102 (138)
4 COG2360 Aat Leu/Phe-tRNA-prote 43.0 3.5 7.6E-05 34.9 -2.1 63 63-126 65-131 (221)
5 PF02192 PI3K_p85B: PI3-kinase 37.7 19 0.00042 25.5 1.3 48 41-91 26-76 (78)
6 COG2802 Uncharacterized protei 37.3 20 0.00044 30.2 1.5 27 70-96 5-31 (221)
7 PF09783 Vac_ImportDeg: Vacuol 32.2 66 0.0014 25.8 3.6 30 112-141 111-152 (176)
8 PF12582 DUF3757: Protein of u 31.7 58 0.0013 24.3 3.0 65 72-139 43-113 (121)
9 PF13024 DUF3884: Protein of u 30.2 31 0.00066 24.8 1.3 29 14-43 23-51 (77)
10 PRK00329 GIY-YIG nuclease supe 25.8 40 0.00086 23.7 1.2 17 46-62 11-27 (86)
11 KOG3873|consensus 25.3 43 0.00094 30.9 1.7 19 18-36 109-127 (422)
12 PF08212 Lipocalin_2: Lipocali 24.4 1.1E+02 0.0023 22.2 3.3 44 95-138 4-47 (143)
13 COG5073 VID24 Vacuolar import 24.1 58 0.0013 28.6 2.1 31 109-139 192-235 (272)
14 PRK06298 type III secretion sy 23.5 37 0.00081 29.6 0.9 19 108-126 256-277 (356)
15 PRK10507 bifunctional glutathi 22.0 39 0.00085 31.9 0.8 37 63-106 195-231 (619)
16 PF08553 VID27: VID27 cytoplas 21.5 44 0.00096 32.6 1.0 45 72-121 669-713 (794)
17 PRK08156 type III secretion sy 21.5 46 0.001 29.3 1.0 19 108-126 250-271 (361)
18 PRK12468 flhB flagellar biosyn 21.4 44 0.00095 29.6 0.9 19 108-126 262-283 (386)
19 PRK13109 flhB flagellar biosyn 21.1 44 0.00096 29.2 0.8 19 108-126 264-285 (358)
20 PRK05702 flhB flagellar biosyn 20.3 48 0.001 28.9 0.9 19 108-126 262-283 (359)
21 PF00635 Motile_Sperm: MSP (Ma 20.1 66 0.0014 21.4 1.4 34 48-92 27-60 (109)
No 1
>PLN00054 photosystem I reaction center subunit N; Provisional
Probab=61.80 E-value=3.2 Score=33.16 Aligned_cols=17 Identities=41% Similarity=1.028 Sum_probs=13.1
Q ss_pred eeeeCCC-CCCCCccccc
Q psy13331 84 AEVVEPG-CQLPQNFSGD 100 (143)
Q Consensus 84 ~e~v~PG-C~lP~nFsG~ 100 (143)
+-.|+-| |++|+||+|-
T Consensus 85 a~TV~~G~C~FP~Nf~GC 102 (139)
T PLN00054 85 SRTVQDGTCKFPENFTGC 102 (139)
T ss_pred heeeecccccCCcccccH
Confidence 3456665 9999999994
No 2
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=46.51 E-value=16 Score=29.85 Aligned_cols=51 Identities=29% Similarity=0.443 Sum_probs=36.4
Q ss_pred ccceeeeec--ccCCCceEEEeeecccccccccccCCceeEEeecce-----eeeeCCCCCC
Q psy13331 39 KDEKFRCFL--KNRDDDLYIGVSITAECSTLKTVEKSPERLHITPVK-----AEVVEPGCQL 93 (143)
Q Consensus 39 ~dekyRCfl--kNrdDd~y~G~SitaeC~tLkt~e~sPeRl~l~Pvk-----~e~v~PGC~l 93 (143)
+-|.|+|++ .|..+.---+|.|.+|..|=.. + .|+.|.+.. ...|+||+.|
T Consensus 12 lGEtF~~~l~~~N~s~~~v~~v~ikvemqT~s~---~-~r~~L~~~~~~~~~~~~L~p~~~l 69 (249)
T PF06159_consen 12 LGETFSCYLSVNNDSNKPVRNVRIKVEMQTPSQ---S-LRLPLSDNENSDSPVASLAPGESL 69 (249)
T ss_pred ecCCEEEEEEeecCCCCceEEeEEEEEEeCCCC---C-ccccCCCCccccccccccCCCCeE
Confidence 357888888 7888888889999998655332 2 566666643 3468999876
No 3
>PF05479 PsaN: Photosystem I reaction centre subunit N (PSAN or PSI-N); InterPro: IPR008796 This family contains several Photosystem I reaction centre subunit N (PSI-N) proteins. The protein has no known function although it is localised in the thylakoid lumen []. PSI-N is a small extrinsic subunit at the lumen side and is very likely involved in the docking of plastocyanin.; GO: 0005516 calmodulin binding, 0015979 photosynthesis, 0009522 photosystem I, 0042651 thylakoid membrane; PDB: 2WSE_N 2WSC_N 2WSF_N 2O01_N.
Probab=46.09 E-value=9.7 Score=30.43 Aligned_cols=17 Identities=47% Similarity=0.933 Sum_probs=10.9
Q ss_pred eeeeCCC-CCCCCccccc
Q psy13331 84 AEVVEPG-CQLPQNFSGD 100 (143)
Q Consensus 84 ~e~v~PG-C~lP~nFsG~ 100 (143)
+-.|+-| |++|+||+|-
T Consensus 85 ~~tv~fg~c~fP~n~~gc 102 (138)
T PF05479_consen 85 AYTVQFGTCKFPENFTGC 102 (138)
T ss_dssp GTT--TSTSSSSS-SSSS
T ss_pred heeeecccccCCccchhh
Confidence 4456655 9999999995
No 4
>COG2360 Aat Leu/Phe-tRNA-protein transferase [Posttranslational modification, protein turnover, chaperones]
Probab=42.97 E-value=3.5 Score=34.91 Aligned_cols=63 Identities=30% Similarity=0.445 Sum_probs=48.0
Q ss_pred cccccccccCCceeEEeecceeeeeCCCCCCCCc-cccceeeccccceeE---EecceeEEEeEecCC
Q psy13331 63 ECSTLKTVEKSPERLHITPVKAEVVEPGCQLPQN-FSGDWINTANIDADV---FINETHIIETYYPDE 126 (143)
Q Consensus 63 eC~tLkt~e~sPeRl~l~Pvk~e~v~PGC~lP~n-FsG~W~ntan~da~V---~In~THI~et~~pd~ 126 (143)
.++--|+..++|=|.++.-..++|++ ||.-+.. =.|.|||..=..|-. .+---|-+|+|..|+
T Consensus 65 ~rsl~k~lr~~~~~v~~n~aF~~Vi~-~CA~~~~~r~~TWI~~~~~~aY~~Lh~~G~AHSvE~W~gde 131 (221)
T COG2360 65 SRSLKKFLRQSPYRVRVNYAFAAVIE-GCAATRPPRDGTWINDEIREAYHKLHEMGHAHSVEVWQGDE 131 (221)
T ss_pred cHHHHHHHccCCeEEEechhHHHHHH-HHhccCCCCCCcccCHHHHHHHHHHHHhccceeEEEeeCCe
Confidence 35556788899999999999888775 8988654 689999976544433 344569999999886
No 5
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=37.74 E-value=19 Score=25.46 Aligned_cols=48 Identities=21% Similarity=0.247 Sum_probs=31.9
Q ss_pred ceeeeecccCCCceEEEeeecccccccccccCCceeE-Eeecce--eeeeCCCC
Q psy13331 41 EKFRCFLKNRDDDLYIGVSITAECSTLKTVEKSPERL-HITPVK--AEVVEPGC 91 (143)
Q Consensus 41 ekyRCflkNrdDd~y~G~SitaeC~tLkt~e~sPeRl-~l~Pvk--~e~v~PGC 91 (143)
...-++|++++|=.|.|++-+++.-.|..-. -|| .|+|.. +..|||-|
T Consensus 26 ~PL~~~L~~~~~Y~F~~in~~ae~EEl~DEs---rrL~dv~pf~p~Lklver~g 76 (78)
T PF02192_consen 26 YPLFSLLKDPSSYIFSCINQFAEQEELYDES---RRLCDVRPFFPVLKLVERSG 76 (78)
T ss_dssp STTCCCS--GGGEEEEEEBTTSCEEEE--TT---SBTGGC-BSSSEEEEEESTT
T ss_pred CChHHHhCCCCcEEEEEecCCCccceeEcch---heeeeccCcceEEEEEeecC
Confidence 3456789999999999999999987554332 677 777763 66666654
No 6
>COG2802 Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only]
Probab=37.32 E-value=20 Score=30.19 Aligned_cols=27 Identities=33% Similarity=0.545 Sum_probs=23.8
Q ss_pred ccCCceeEEeecceeeeeCCCCCCCCc
Q psy13331 70 VEKSPERLHITPVKAEVVEPGCQLPQN 96 (143)
Q Consensus 70 ~e~sPeRl~l~Pvk~e~v~PGC~lP~n 96 (143)
+-..|.-|.|-|..-.++-|||.||.|
T Consensus 5 ~~~~p~~LplFPL~~~vLlPg~~LpL~ 31 (221)
T COG2802 5 PDDLPLELPLFPLPGAVLLPGGLLPLN 31 (221)
T ss_pred cCCccceeeccccccccccCCCCCchh
Confidence 446789999999999999999999975
No 7
>PF09783 Vac_ImportDeg: Vacuolar import and degradation protein; InterPro: IPR018618 Members of this family are involved in the negative regulation of gluconeogenesis. They are required for both proteosome-dependent and vacuolar catabolite degradation of fructose-1,6-bisphosphatase (FBPase), where they probably regulate FBPase targeting from the FBPase-containing vesicles to the vacuole [, ].
Probab=32.25 E-value=66 Score=25.82 Aligned_cols=30 Identities=20% Similarity=0.559 Sum_probs=22.3
Q ss_pred EecceeEEEeEe-----cC-------CceeeeEEEEeeeecc
Q psy13331 112 FINETHIIETYY-----PD-------EGRYRRTIYVCREQRD 141 (143)
Q Consensus 112 ~In~THI~et~~-----pd-------~~ryr~tiyVCreqr~ 141 (143)
..|.-||+|+|| || ..-|.==||||-.|..
T Consensus 111 ~~~~~~IfMRWKE~Flvpd~~~~~i~GaSf~GFYYI~~~~~~ 152 (176)
T PF09783_consen 111 LLNQRYIFMRWKERFLVPDHRVKSISGASFEGFYYICLDRST 152 (176)
T ss_pred hcCCCcEEEEEEeEEEcccccCCCcCceeEeeEEEEEEEccC
Confidence 358899999998 55 2456667899988743
No 8
>PF12582 DUF3757: Protein of unknown function (DUF3757); InterPro: IPR022231 This family of proteins is found in bacteria. Proteins in this family are typically between 94 and 154 amino acids in length.
Probab=31.75 E-value=58 Score=24.26 Aligned_cols=65 Identities=23% Similarity=0.314 Sum_probs=42.2
Q ss_pred CCceeEEeecceeeeeCCC----CCC--CCccccceeeccccceeEEecceeEEEeEecCCceeeeEEEEeeee
Q psy13331 72 KSPERLHITPVKAEVVEPG----CQL--PQNFSGDWINTANIDADVFINETHIIETYYPDEGRYRRTIYVCREQ 139 (143)
Q Consensus 72 ~sPeRl~l~Pvk~e~v~PG----C~l--P~nFsG~W~ntan~da~V~In~THI~et~~pd~~ryr~tiyVCreq 139 (143)
++..+.-|.+......++| |.+ .++-..++-+..+....+.|-..+.. |+..++-| .++|+|.++
T Consensus 43 ~~F~~A~i~~~~~~~~~~g~~~~CtY~l~~~~~~dm~~~~~~~~~~~i~~~~~~--W~~~~~~~-~~~~~Cs~~ 113 (121)
T PF12582_consen 43 KSFSEALIIPDSNSDFGPGKFVKCTYNLADGGEVDMYYRMNLGKLISISGVGPH--WKKEEGPF-LEYYVCSGT 113 (121)
T ss_pred cCcceEEEEEccCCcccCCceEEeeeecCCCCcEEEEEEccCCeeEEEecCCcc--ceeccCCc-eeeeeeCCC
Confidence 3444455555533211232 654 45777777777777777777654433 99999999 999999854
No 9
>PF13024 DUF3884: Protein of unknown function (DUF3884)
Probab=30.16 E-value=31 Score=24.82 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=21.9
Q ss_pred EEEEeceeeecCCcEEEEeeccccccccee
Q psy13331 14 EYSCLGDWFVDKNHFFAVANTKESRKDEKF 43 (143)
Q Consensus 14 ~~~ClG~Wf~~knh~fAvantkesr~deky 43 (143)
+...||.|++..++.|+--. +-+..+|+.
T Consensus 23 ~lk~LG~W~~~tg~~WiChS-~~~~eeFq~ 51 (77)
T PF13024_consen 23 ELKSLGKWYVTTGKEWICHS-DLSLEEFQK 51 (77)
T ss_pred HHHHhhceeecCCcEEEEec-cccHHHHHH
Confidence 45679999999999998655 556666654
No 10
>PRK00329 GIY-YIG nuclease superfamily protein; Validated
Probab=25.83 E-value=40 Score=23.74 Aligned_cols=17 Identities=29% Similarity=0.657 Sum_probs=12.9
Q ss_pred ecccCCCceEEEeeecc
Q psy13331 46 FLKNRDDDLYIGVSITA 62 (143)
Q Consensus 46 flkNrdDd~y~G~Sita 62 (143)
.|.+.+|-+|+|++.+.
T Consensus 11 il~~~~~~~Y~G~T~dl 27 (86)
T PRK00329 11 LLRCADGSLYTGITTDV 27 (86)
T ss_pred EEEcCCCCEEEEEcCCH
Confidence 34567889999998653
No 11
>KOG3873|consensus
Probab=25.30 E-value=43 Score=30.88 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=15.1
Q ss_pred eceeeecCCcEEEEeeccc
Q psy13331 18 LGDWFVDKNHFFAVANTKE 36 (143)
Q Consensus 18 lG~Wf~~knh~fAvantke 36 (143)
-||||+||+-=-++.+...
T Consensus 109 rGDWf~GK~Vgl~~l~~~g 127 (422)
T KOG3873|consen 109 RGDWFGGKGVGLTVLLVGG 127 (422)
T ss_pred eccccccceeEEEEEeeCC
Confidence 4999999987777776654
No 12
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=24.45 E-value=1.1e+02 Score=22.19 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=28.5
Q ss_pred CccccceeeccccceeEEecceeEEEeEecCCceeeeEEEEeee
Q psy13331 95 QNFSGDWINTANIDADVFINETHIIETYYPDEGRYRRTIYVCRE 138 (143)
Q Consensus 95 ~nFsG~W~ntan~da~V~In~THI~et~~pd~~ryr~tiyVCre 138 (143)
.-|+|.|..-|-+.....-+...+...|-......=...+.|+.
T Consensus 4 ~rY~G~WYEiar~p~~~q~~~~~~~a~Yt~~~dg~i~V~n~~~~ 47 (143)
T PF08212_consen 4 DRYMGTWYEIARYPNFFQRGCVCVTAEYTLRDDGTISVRNSCRR 47 (143)
T ss_dssp CCC-EEEEEEEEE--CCCTT-ECEEEEEEE-TTS-EEEEEEEEE
T ss_pred HHcCEeeeEEEEECCcccceeeeeeeeEEEcCCCEEEEEEEEEc
Confidence 45899999999998888877778888888754434445566764
No 13
>COG5073 VID24 Vacuolar import and degradation protein [Intracellular trafficking and secretion]
Probab=24.10 E-value=58 Score=28.59 Aligned_cols=31 Identities=29% Similarity=0.429 Sum_probs=26.4
Q ss_pred eeEEecceeEEEeEe-----cC--------CceeeeEEEEeeee
Q psy13331 109 ADVFINETHIIETYY-----PD--------EGRYRRTIYVCREQ 139 (143)
Q Consensus 109 a~V~In~THI~et~~-----pd--------~~ryr~tiyVCreq 139 (143)
-+..||+.-|+|+|| || ..+|+--||+|--|
T Consensus 192 ~~~~~~qryIymkWKE~flL~D~l~~d~~~GaS~dGFYY~c~~q 235 (272)
T COG5073 192 KDYKINQRYIYMKWKELFLLPDPLQLDTISGASIDGFYYCCLDQ 235 (272)
T ss_pred chhhhhheeeeeeehhhhccCchHhhcCCCCceeccEEEEEEec
Confidence 578899999999998 44 57899999999876
No 14
>PRK06298 type III secretion system protein; Validated
Probab=23.49 E-value=37 Score=29.62 Aligned_cols=19 Identities=26% Similarity=0.522 Sum_probs=13.4
Q ss_pred ceeEEe-cceeEEE--eEecCC
Q psy13331 108 DADVFI-NETHIIE--TYYPDE 126 (143)
Q Consensus 108 da~V~I-n~THI~e--t~~pd~ 126 (143)
+|||+| |.||+-= +|.|++
T Consensus 256 ~AdVVItNPTH~AVALkYd~~~ 277 (356)
T PRK06298 256 HASAVVSNPKDIAVAIGYMPEK 277 (356)
T ss_pred CCcEEEECCCceEEEeEeCCCC
Confidence 688888 9999864 444443
No 15
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=22.00 E-value=39 Score=31.91 Aligned_cols=37 Identities=24% Similarity=0.414 Sum_probs=29.4
Q ss_pred cccccccccCCceeEEeecceeeeeCCCCCCCCccccceeeccc
Q psy13331 63 ECSTLKTVEKSPERLHITPVKAEVVEPGCQLPQNFSGDWINTAN 106 (143)
Q Consensus 63 eC~tLkt~e~sPeRl~l~Pvk~e~v~PGC~lP~nFsG~W~ntan 106 (143)
+=-.+..++..|+-|.|...... .|.+|.+.|.|++|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~wl~~~~ 231 (619)
T PRK10507 195 TEYSLPQPEIAGELLKISGARLE-------NKGQFDGKWLDEKD 231 (619)
T ss_pred cccccCCCCCchhhhcccccccC-------CccccCcccCCCCC
Confidence 33467778888888888776544 78999999999999
No 16
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=21.46 E-value=44 Score=32.56 Aligned_cols=45 Identities=24% Similarity=0.381 Sum_probs=34.0
Q ss_pred CCceeEEeecceeeeeCCCCCCCCccccceeeccccceeEEecceeEEEe
Q psy13331 72 KSPERLHITPVKAEVVEPGCQLPQNFSGDWINTANIDADVFINETHIIET 121 (143)
Q Consensus 72 ~sPeRl~l~Pvk~e~v~PGC~lP~nFsG~W~ntan~da~V~In~THI~et 121 (143)
-.|.||.|+|..+..++-+=.-|-+|+..=|||.+ + =.|+||+-.
T Consensus 669 p~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~-~----~~E~~Ivts 713 (794)
T PF08553_consen 669 PQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGI-G----KQETSIVTS 713 (794)
T ss_pred CCCeEEecCHHHHHHHHhccCCCceeeceEEecCC-C----CccceEEEe
Confidence 37999999999877775555677899999999753 2 257777754
No 17
>PRK08156 type III secretion system protein SpaS; Validated
Probab=21.45 E-value=46 Score=29.28 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=13.5
Q ss_pred ceeEEe-cceeEEE--eEecCC
Q psy13331 108 DADVFI-NETHIIE--TYYPDE 126 (143)
Q Consensus 108 da~V~I-n~THI~e--t~~pd~ 126 (143)
+|||+| |.||+-= +|.|++
T Consensus 250 ~AdVVItNPTH~AVALkYd~~~ 271 (361)
T PRK08156 250 NSRLIVANPTHIAIGIYFNPEL 271 (361)
T ss_pred CCcEEEECCCeEEEEEEecCCC
Confidence 688888 9999753 454443
No 18
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=21.36 E-value=44 Score=29.58 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=13.5
Q ss_pred ceeEEe-cceeEEE--eEecCC
Q psy13331 108 DADVFI-NETHIIE--TYYPDE 126 (143)
Q Consensus 108 da~V~I-n~THI~e--t~~pd~ 126 (143)
+|||+| |.||+-- +|.|++
T Consensus 262 ~AdVVItNPTH~AVALkY~~~~ 283 (386)
T PRK12468 262 KADVIVTNPTHYAVALQYNESK 283 (386)
T ss_pred CCcEEEECCCceEEEEEeCCCC
Confidence 688988 9999865 444433
No 19
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=21.07 E-value=44 Score=29.19 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=12.9
Q ss_pred ceeEEe-cceeEEE--eEecCC
Q psy13331 108 DADVFI-NETHIIE--TYYPDE 126 (143)
Q Consensus 108 da~V~I-n~THI~e--t~~pd~ 126 (143)
+|||+| |.||+-= +|.|++
T Consensus 264 ~AdVVItNPTH~AVAL~Yd~~~ 285 (358)
T PRK13109 264 RATLVIANPTHFAIALRYERSE 285 (358)
T ss_pred CCcEEEECCCceEEEeEeCCCC
Confidence 688888 9999753 444433
No 20
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=20.32 E-value=48 Score=28.94 Aligned_cols=19 Identities=42% Similarity=0.510 Sum_probs=13.4
Q ss_pred ceeEEe-cceeEEE--eEecCC
Q psy13331 108 DADVFI-NETHIIE--TYYPDE 126 (143)
Q Consensus 108 da~V~I-n~THI~e--t~~pd~ 126 (143)
+|||+| |.||+-= +|.|++
T Consensus 262 ~AdVVItNPTH~AVal~Y~~~~ 283 (359)
T PRK05702 262 KADVVITNPTHYAVALKYDRGK 283 (359)
T ss_pred CCcEEEECCCceEEEeEeCCCC
Confidence 588887 9999864 454544
No 21
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=20.06 E-value=66 Score=21.40 Aligned_cols=34 Identities=29% Similarity=0.560 Sum_probs=19.8
Q ss_pred ccCCCceEEEeeecccccccccccCCceeEEeecceeeeeCCCCC
Q psy13331 48 KNRDDDLYIGVSITAECSTLKTVEKSPERLHITPVKAEVVEPGCQ 92 (143)
Q Consensus 48 kNrdDd~y~G~SitaeC~tLkt~e~sPeRl~l~Pvk~e~v~PGC~ 92 (143)
+|+.|. .+...|. -++|.+|.+.|. ...|+||+.
T Consensus 27 ~N~s~~-~i~fKik---------tt~~~~y~v~P~-~G~i~p~~~ 60 (109)
T PF00635_consen 27 TNPSDK-PIAFKIK---------TTNPNRYRVKPS-YGIIEPGES 60 (109)
T ss_dssp EE-SSS-EEEEEEE---------ES-TTTEEEESS-EEEE-TTEE
T ss_pred ECCCCC-cEEEEEE---------cCCCceEEecCC-CEEECCCCE
Confidence 677665 4444442 246778888888 467778764
Done!