Query psy13331
Match_columns 143
No_of_seqs 13 out of 15
Neff 2.1
Searched_HMMs 29240
Date Fri Aug 16 16:45:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13331.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13331hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lw5_N Photosystem I-N subunit 66.6 1.9 6.4E-05 31.0 1.0 18 84-101 32-50 (85)
2 2wsc_N PSAN, PSI-N, photosyste 55.9 3.6 0.00012 32.6 1.0 17 84-100 117-134 (170)
3 1m1s_A WR4; structural genomic 46.3 18 0.00062 26.0 3.3 20 72-92 46-65 (116)
4 1z9l_A Vesicle-associated memb 39.5 16 0.00055 25.2 2.1 20 72-92 50-69 (128)
5 3lag_A Uncharacterized protein 35.6 12 0.0004 24.7 0.9 34 57-97 1-34 (98)
6 1row_A SSP-19, MSP-domain prot 35.1 20 0.00069 25.0 2.1 20 72-92 38-57 (109)
7 1xed_A Polymeric-immunoglobuli 32.5 48 0.0016 21.5 3.5 23 39-61 86-108 (117)
8 1msp_A MSP, major sperm protei 32.1 22 0.00075 24.9 1.9 19 72-91 48-66 (126)
9 1ywl_A Hypothetical UPF0213 pr 30.5 23 0.00077 24.7 1.7 20 43-62 8-27 (96)
10 2cri_A Vesicle-associated memb 29.0 27 0.00093 24.9 1.9 20 72-92 54-73 (147)
11 1zg2_A Hypothetical UPF0213 pr 24.7 37 0.0013 24.1 2.0 20 43-62 9-28 (107)
12 1wic_A Hypothetical protein ri 22.1 44 0.0015 24.2 2.0 20 72-92 58-77 (152)
13 3kxt_A Chromatin protein CREN7 20.7 60 0.0021 21.7 2.2 22 67-90 6-27 (56)
No 1
>3lw5_N Photosystem I-N subunit, photosystem I reaction center subunit IX; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CLA PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_N*
Probab=66.58 E-value=1.9 Score=31.04 Aligned_cols=18 Identities=50% Similarity=0.866 Sum_probs=13.6
Q ss_pred eeeeCCC-CCCCCccccce
Q psy13331 84 AEVVEPG-CQLPQNFSGDW 101 (143)
Q Consensus 84 ~e~v~PG-C~lP~nFsG~W 101 (143)
+-.|+-| |++|+||.|-=
T Consensus 32 s~TV~~G~C~FP~Nf~GCq 50 (85)
T 3lw5_N 32 AYTVEFGSCKFPENFTGCQ 50 (85)
T ss_dssp TSSCCCSCSSCCSCCSCSS
T ss_pred eeEeecccccCCccccchH
Confidence 3456655 99999999953
No 2
>2wsc_N PSAN, PSI-N, photosystem I-N subunit; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Phaseolus vulgaris} PDB: 2wse_N* 2wsf_N*
Probab=55.89 E-value=3.6 Score=32.55 Aligned_cols=17 Identities=53% Similarity=0.970 Sum_probs=13.6
Q ss_pred eeeeCCC-CCCCCccccc
Q psy13331 84 AEVVEPG-CQLPQNFSGD 100 (143)
Q Consensus 84 ~e~v~PG-C~lP~nFsG~ 100 (143)
+-.|+-| |++|+||+|-
T Consensus 117 a~TV~~GtCkFP~Nf~GC 134 (170)
T 2wsc_N 117 AYTVEFGSCKFPENFTGC 134 (170)
T ss_dssp CTTCCCSCSSCCSCCSCS
T ss_pred eeeeecccccCCccccch
Confidence 4466666 9999999995
No 3
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=46.27 E-value=18 Score=25.98 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=15.7
Q ss_pred CCceeEEeecceeeeeCCCCC
Q psy13331 72 KSPERLHITPVKAEVVEPGCQ 92 (143)
Q Consensus 72 ~sPeRl~l~Pvk~e~v~PGC~ 92 (143)
++|+.|+++|+ ...|+||..
T Consensus 46 T~p~~YrVrP~-~G~I~Pg~~ 65 (116)
T 1m1s_A 46 SNNEHYRVRPV-YGFVDAKGK 65 (116)
T ss_dssp SCTTTEEEECS-EEEECTTCE
T ss_pred cCCCceEEcCC-ceEECCCCe
Confidence 57999999998 457788764
No 4
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=39.47 E-value=16 Score=25.25 Aligned_cols=20 Identities=30% Similarity=0.697 Sum_probs=16.4
Q ss_pred CCceeEEeecceeeeeCCCCC
Q psy13331 72 KSPERLHITPVKAEVVEPGCQ 92 (143)
Q Consensus 72 ~sPeRl~l~Pvk~e~v~PGC~ 92 (143)
++|.||.++|.. ..|+||..
T Consensus 50 T~p~~y~VrP~~-G~i~P~~s 69 (128)
T 1z9l_A 50 TAPRRYCVRPNS-GVIDPGSI 69 (128)
T ss_dssp SCGGGEEEESCE-EEECTTCE
T ss_pred CCCCceEEeCCC-cEECCCCe
Confidence 689999999995 57888764
No 5
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=35.61 E-value=12 Score=24.65 Aligned_cols=34 Identities=15% Similarity=0.320 Sum_probs=24.4
Q ss_pred EeeecccccccccccCCceeEEeecceeeeeCCCCCCCCcc
Q psy13331 57 GVSITAECSTLKTVEKSPERLHITPVKAEVVEPGCQLPQNF 97 (143)
Q Consensus 57 G~SitaeC~tLkt~e~sPeRl~l~Pvk~e~v~PGC~lP~nF 97 (143)
||++.|.+.+|-. + +|++++=+ .|+||..+|--.
T Consensus 1 ~~~~~a~~~V~ie--n--~~~rV~r~---~i~PG~~~~~H~ 34 (98)
T 3lag_A 1 GMTVAAKSEIQID--N--DEVRVTEW---RLPPGSATGHHT 34 (98)
T ss_dssp CCCEECEEEEEEE--S--SSEEEEEE---EECTTEECCSEE
T ss_pred CCCccceeeEEEc--C--CeEEEEEE---EECCCCccCcEE
Confidence 7888888877643 3 46776555 899999998643
No 6
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=35.11 E-value=20 Score=25.01 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=15.8
Q ss_pred CCceeEEeecceeeeeCCCCC
Q psy13331 72 KSPERLHITPVKAEVVEPGCQ 92 (143)
Q Consensus 72 ~sPeRl~l~Pvk~e~v~PGC~ 92 (143)
+||+.|+++|+ ...|+||..
T Consensus 38 T~p~~y~VrP~-~G~I~P~~~ 57 (109)
T 1row_A 38 SNNNEYRIAPV-FGFVDPSGS 57 (109)
T ss_dssp SCSSSEEEECS-EEEECTTEE
T ss_pred CCCCceEEcCC-ceEECCCCe
Confidence 58999999998 457788753
No 7
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system; 1.90A {Homo sapiens} SCOP: b.1.1.1
Probab=32.48 E-value=48 Score=21.53 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=18.3
Q ss_pred ccceeeeecccCCCceEEEeeec
Q psy13331 39 KDEKFRCFLKNRDDDLYIGVSIT 61 (143)
Q Consensus 39 ~dekyRCflkNrdDd~y~G~Sit 61 (143)
..-.|.|...+...++|.|+.++
T Consensus 86 DsG~Y~C~v~~~~~~l~f~~~~~ 108 (117)
T 1xed_A 86 DSGRYKCGLGINSRGLSFDVSLE 108 (117)
T ss_dssp GCEEEEEEESCGGGCCEEEEEEE
T ss_pred HCEEEEEEEEeCCCCeeEEEEEE
Confidence 34478999988888899998765
No 8
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=32.11 E-value=22 Score=24.93 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=14.1
Q ss_pred CCceeEEeecceeeeeCCCC
Q psy13331 72 KSPERLHITPVKAEVVEPGC 91 (143)
Q Consensus 72 ~sPeRl~l~Pvk~e~v~PGC 91 (143)
+||.||+++|. ..+|+||-
T Consensus 48 T~p~~y~VrP~-~Gii~P~~ 66 (126)
T 1msp_A 48 TNMRRLSVDPP-CGVLDPKE 66 (126)
T ss_dssp SCTTTEEEESC-EEEECTTC
T ss_pred CCCCcEEEECC-CeEECCCC
Confidence 68999999998 34555554
No 9
>1ywl_A Hypothetical UPF0213 protein EF2693; alpha and beta, structural genomics, northeast structural genomics consortium (NESG); NMR {Enterococcus faecalis}
Probab=30.51 E-value=23 Score=24.75 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=15.5
Q ss_pred eeeecccCCCceEEEeeecc
Q psy13331 43 FRCFLKNRDDDLYIGVSITA 62 (143)
Q Consensus 43 yRCflkNrdDd~y~G~Sita 62 (143)
|--+|.++|+-||+|++.+.
T Consensus 8 ~vYIL~~~~g~lY~G~T~dl 27 (96)
T 1ywl_A 8 YFYVLLCQDGSFYGGYTTEP 27 (96)
T ss_dssp EEEEEECTTCCCEEEEESCH
T ss_pred EEEEEEcCCCCEEEEEeCCH
Confidence 44566889999999988653
No 10
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=28.99 E-value=27 Score=24.92 Aligned_cols=20 Identities=25% Similarity=0.692 Sum_probs=15.6
Q ss_pred CCceeEEeecceeeeeCCCCC
Q psy13331 72 KSPERLHITPVKAEVVEPGCQ 92 (143)
Q Consensus 72 ~sPeRl~l~Pvk~e~v~PGC~ 92 (143)
++|.||.++|.. ..|+||..
T Consensus 54 T~p~~y~VrP~~-GiI~P~~s 73 (147)
T 2cri_A 54 TAPRRYCVRPNS-GIIDPGSI 73 (147)
T ss_dssp SCTTSEEEESSE-EECCTTCE
T ss_pred CCCccEEEcCCC-cEECCCCe
Confidence 689999999985 46777663
No 11
>1zg2_A Hypothetical UPF0213 protein BH0048; BHR2, structure, autostructure, northeast structural genomics consortium, PSI; NMR {Bacillus halodurans}
Probab=24.69 E-value=37 Score=24.06 Aligned_cols=20 Identities=20% Similarity=0.468 Sum_probs=15.6
Q ss_pred eeeecccCCCceEEEeeecc
Q psy13331 43 FRCFLKNRDDDLYIGVSITA 62 (143)
Q Consensus 43 yRCflkNrdDd~y~G~Sita 62 (143)
|--+|.++++-||+|++.+.
T Consensus 9 ~VYIL~~~~g~lY~G~T~dl 28 (107)
T 1zg2_A 9 YVYILECKDGSWYTGYTTDV 28 (107)
T ss_dssp EEEEEECTTSCEEEEEECCH
T ss_pred EEEEEEcCCCCEEEEEECCH
Confidence 45567889999999988653
No 12
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=22.06 E-value=44 Score=24.21 Aligned_cols=20 Identities=25% Similarity=0.718 Sum_probs=16.2
Q ss_pred CCceeEEeecceeeeeCCCCC
Q psy13331 72 KSPERLHITPVKAEVVEPGCQ 92 (143)
Q Consensus 72 ~sPeRl~l~Pvk~e~v~PGC~ 92 (143)
++|.+|.++|.. -.|+||..
T Consensus 58 T~p~~y~VrP~~-GiI~P~~s 77 (152)
T 1wic_A 58 TAPEKYRVKPSN-SSCDPGAS 77 (152)
T ss_dssp SCTTTEEEESSE-EEECTTCE
T ss_pred CCCCceeecCCC-cEECCCCe
Confidence 689999999984 47788764
No 13
>3kxt_A Chromatin protein CREN7; protein-DNA complex, crenarchaea chromatin protein, minor-GR binding, methylation; 1.60A {Sulfolobus solfataricus} PDB: 2jtm_A 3lwh_A* 3lwi_A*
Probab=20.66 E-value=60 Score=21.66 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=17.2
Q ss_pred cccccCCceeEEeecceeeeeCCC
Q psy13331 67 LKTVEKSPERLHITPVKAEVVEPG 90 (143)
Q Consensus 67 Lkt~e~sPeRl~l~Pvk~e~v~PG 90 (143)
+|++. =.+++|.|+|+=+|+|-
T Consensus 6 vk~p~--G~e~~L~P~KvWvL~P~ 27 (56)
T 3kxt_A 6 VKTPA--GKEAELVPEKVWALAPK 27 (56)
T ss_dssp EECTT--SCEEEECCSEEEEECCT
T ss_pred eeCCC--CCEEEEeeeEEEEEcCC
Confidence 34553 56899999999999984
Done!