Query psy13331
Match_columns 143
No_of_seqs 13 out of 15
Neff 2.1
Searched_HMMs 13730
Date Fri Aug 16 16:46:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13331.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13331hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m1sa_ b.1.11.2 (A:) WR4 {Nem 32.1 9.8 0.00071 24.8 1.7 21 72-93 39-59 (109)
2 d1rowa_ b.1.11.2 (A:) SSP-19 { 25.9 12 0.00088 24.5 1.3 20 72-92 36-55 (107)
3 d1nlqa_ b.121.3.1 (A:) Chromat 23.8 56 0.0041 20.6 4.4 10 53-62 2-11 (105)
4 d1vema1 b.3.1.1 (A:418-516) be 22.8 52 0.0038 20.5 4.0 29 24-53 45-74 (99)
5 d1grwa_ b.1.11.2 (A:) Major sp 22.3 21 0.0015 23.5 2.0 20 72-92 46-65 (124)
6 d1b9wa1 g.3.11.4 (A:1-45) Mero 21.6 19 0.0014 21.7 1.4 14 9-22 22-35 (45)
7 d1kt7a_ b.60.1.1 (A:) Retinol 20.3 49 0.0036 21.0 3.6 32 95-126 18-49 (175)
8 d1b12a_ b.87.1.2 (A:) Type 1 s 20.2 17 0.0012 25.0 1.2 27 18-44 182-208 (247)
9 d1wica_ b.1.11.2 (A:) MSP doma 19.7 25 0.0018 23.8 2.0 20 72-92 58-77 (152)
10 d1ob1c1 g.3.11.4 (C:1-45) Mero 18.8 20 0.0014 21.6 1.1 13 8-20 21-33 (45)
No 1
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=32.14 E-value=9.8 Score=24.82 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=16.6
Q ss_pred CCceeEEeecceeeeeCCCCCC
Q psy13331 72 KSPERLHITPVKAEVVEPGCQL 93 (143)
Q Consensus 72 ~sPeRl~l~Pvk~e~v~PGC~l 93 (143)
++|++|+++|.. ..|+||+..
T Consensus 39 t~~~~y~V~P~~-G~I~P~~~~ 59 (109)
T d1m1sa_ 39 SNNEHYRVRPVY-GFVDAKGKS 59 (109)
T ss_dssp SCTTTEEEECSE-EEECTTCEE
T ss_pred CCCCeEEEeCCe-eEECCCCeE
Confidence 578999999984 478888753
No 2
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=25.90 E-value=12 Score=24.52 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=16.1
Q ss_pred CCceeEEeecceeeeeCCCCC
Q psy13331 72 KSPERLHITPVKAEVVEPGCQ 92 (143)
Q Consensus 72 ~sPeRl~l~Pvk~e~v~PGC~ 92 (143)
++|++|+++|.. ..|+||+.
T Consensus 36 t~~~~y~V~P~~-G~i~P~~~ 55 (107)
T d1rowa_ 36 SNNNEYRIAPVF-GFVDPSGS 55 (107)
T ss_dssp SCSSSEEEECSE-EEECTTEE
T ss_pred CCCCeEEEECCE-EEECCCCE
Confidence 478999999985 47888873
No 3
>d1nlqa_ b.121.3.1 (A:) Chromatin decondensation protein 1 (Crp1, Nlp) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=23.83 E-value=56 Score=20.57 Aligned_cols=10 Identities=40% Similarity=0.806 Sum_probs=4.7
Q ss_pred ceEEEeeecc
Q psy13331 53 DLYIGVSITA 62 (143)
Q Consensus 53 d~y~G~Sita 62 (143)
.+|||+-+.+
T Consensus 2 e~FwG~el~~ 11 (105)
T d1nlqa_ 2 ESFYGVTLTA 11 (105)
T ss_dssp EEEEEEEECS
T ss_pred CeeEEEEEcC
Confidence 3445554444
No 4
>d1vema1 b.3.1.1 (A:418-516) beta-amylase {Bacillus cereus [TaxId: 1396]}
Probab=22.75 E-value=52 Score=20.47 Aligned_cols=29 Identities=14% Similarity=0.367 Sum_probs=16.2
Q ss_pred cCCcEE-EEeecccccccceeeeecccCCCc
Q psy13331 24 DKNHFF-AVANTKESRKDEKFRCFLKNRDDD 53 (143)
Q Consensus 24 ~knh~f-Avantkesr~dekyRCflkNrdDd 53 (143)
..+++| +.+.-..+ ..+.|+++.++.+..
T Consensus 45 ~~~~~W~~~v~lp~~-~~~eYKyvi~~~~g~ 74 (99)
T d1vema1 45 SHSNDWRGNVVLPAE-RNIEFKAFIKSKDGT 74 (99)
T ss_dssp TTTTEEEEEEEEETT-CCEEEEEEEECTTSC
T ss_pred CCCCCEEEEEEEcCC-CcEEEEEEEEeCCCC
Confidence 345566 33333333 256788888876543
No 5
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=22.26 E-value=21 Score=23.55 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=15.7
Q ss_pred CCceeEEeecceeeeeCCCCC
Q psy13331 72 KSPERLHITPVKAEVVEPGCQ 92 (143)
Q Consensus 72 ~sPeRl~l~Pvk~e~v~PGC~ 92 (143)
++|.||.++|. ...|+||+.
T Consensus 46 t~p~~y~v~P~-~G~i~p~~~ 65 (124)
T d1grwa_ 46 TNMKRLGVDPP-CGVLDPKEA 65 (124)
T ss_dssp SCTTTEEEESS-EEEECTTCE
T ss_pred CCCceEEEECC-CCEECCCCE
Confidence 68999999998 456777765
No 6
>d1b9wa1 g.3.11.4 (A:1-45) Merozoite surface protein 1 (MSP-1) {Malaria parasite (Plasmodium cynomolgi) [TaxId: 5827]}
Probab=21.57 E-value=19 Score=21.74 Aligned_cols=14 Identities=29% Similarity=0.430 Sum_probs=10.4
Q ss_pred CCceEEEEEeceee
Q psy13331 9 LQKVVEYSCLGDWF 22 (143)
Q Consensus 9 ~~g~v~~~ClG~Wf 22 (143)
++|.-||+||=..-
T Consensus 22 ~dg~EEwRClL~fK 35 (45)
T d1b9wa1 22 LDGTEEWRCLLYFK 35 (45)
T ss_dssp TTSCEEEEECTTEE
T ss_pred cCCCeeEEEEeeee
Confidence 67888999985543
No 7
>d1kt7a_ b.60.1.1 (A:) Retinol binding protein {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.34 E-value=49 Score=20.98 Aligned_cols=32 Identities=25% Similarity=0.548 Sum_probs=20.8
Q ss_pred CccccceeeccccceeEEecceeEEEeEecCC
Q psy13331 95 QNFSGDWINTANIDADVFINETHIIETYYPDE 126 (143)
Q Consensus 95 ~nFsG~W~ntan~da~V~In~THI~et~~pd~ 126 (143)
+-|.|.|.-.|.+......+..-...+|.+.+
T Consensus 18 ~kf~G~WYeia~~~~~~~~~~~c~~~~y~~~~ 49 (175)
T d1kt7a_ 18 ARFAGTWYAMAKKDPEGLFLQDNIVAEFSVDE 49 (175)
T ss_dssp HHHCEEEEEEEEECCSSSCCCEEEEEEEEECT
T ss_pred HHcCEEhheEEEcCCccccCceEEEEEEEEcC
Confidence 35889999877766555555555556665544
No 8
>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]}
Probab=20.24 E-value=17 Score=24.98 Aligned_cols=27 Identities=19% Similarity=0.697 Sum_probs=22.4
Q ss_pred eceeeecCCcEEEEeecccccccceee
Q psy13331 18 LGDWFVDKNHFFAVANTKESRKDEKFR 44 (143)
Q Consensus 18 lG~Wf~~knh~fAvantkesr~dekyR 44 (143)
.+.|.+.+||||+.-.-..+-.|-||-
T Consensus 182 ~~~~~Vp~~~yfvmGDNR~nS~DSR~w 208 (247)
T d1b12a_ 182 LATWIVPPGQYFMMGDNRDNSADSRYW 208 (247)
T ss_dssp TTEEECCTTEEEEECSBTTSCCCHHHH
T ss_pred cceEEEeCCeEEEecCCCCCCcccccc
Confidence 467999999999998877777787764
No 9
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.66 E-value=25 Score=23.85 Aligned_cols=20 Identities=25% Similarity=0.718 Sum_probs=16.2
Q ss_pred CCceeEEeecceeeeeCCCCC
Q psy13331 72 KSPERLHITPVKAEVVEPGCQ 92 (143)
Q Consensus 72 ~sPeRl~l~Pvk~e~v~PGC~ 92 (143)
++|++|+++|.. -.|+||+.
T Consensus 58 t~p~~y~V~P~~-G~i~p~~~ 77 (152)
T d1wica_ 58 TAPEKYRVKPSN-SSCDPGAS 77 (152)
T ss_dssp SCTTTEEEESSE-EEECTTCE
T ss_pred CCCccEEEECCc-eEECCCCE
Confidence 689999999984 47788874
No 10
>d1ob1c1 g.3.11.4 (C:1-45) Merozoite surface protein 1 (MSP-1) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=18.77 E-value=20 Score=21.63 Aligned_cols=13 Identities=31% Similarity=0.445 Sum_probs=9.4
Q ss_pred CCCceEEEEEece
Q psy13331 8 GLQKVVEYSCLGD 20 (143)
Q Consensus 8 ~~~g~v~~~ClG~ 20 (143)
-++|.-||+||=.
T Consensus 21 yldg~EEwrCLL~ 33 (45)
T d1ob1c1 21 HLDEREECKCLLN 33 (45)
T ss_dssp CTTSCCEEEECTT
T ss_pred ecCCCeeeeeeee
Confidence 3678888888743
Done!