RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy13331
         (143 letters)



>gnl|CDD|237229 PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase; Reviewed.
          Length = 282

 Score = 27.9 bits (63), Expect = 1.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)

Query: 50  RDDDLYIGVSITA 62
           RDDDL IG+  TA
Sbjct: 187 RDDDLKIGIKSTA 199


>gnl|CDD|225362 COG2802, COG2802, Uncharacterized protein, similar to the
          N-terminal domain of Lon protease [General function
          prediction only].
          Length = 221

 Score = 26.2 bits (58), Expect = 6.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 74 PERLHITPVKAEVVEPGCQLPQN 96
          P  L + P+   V+ PG  LP N
Sbjct: 9  PLELPLFPLPGAVLLPGGLLPLN 31


>gnl|CDD|165239 PHA02928, PHA02928, Hypothetical protein; Provisional.
          Length = 214

 Score = 26.1 bits (57), Expect = 7.0
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 4/40 (10%)

Query: 40 DEKFRCFLKNRDDDLYIG----VSITAECSTLKTVEKSPE 75
          D++F+C +    D LY+      SIT E    + VE+ P+
Sbjct: 20 DDEFKCIIHRSSDFLYLSDRDYTSITKETLVSEIVEEYPD 59


>gnl|CDD|233277 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic reticulum
           calcium-translocating P-type ATPase.  This model
           describes the P-type ATPase responsible for
           translocating calcium ions across the endoplasmic
           reticulum membrane of eukaryotes , and is of particular
           importance in the sarcoplasmic reticulum of skeletal and
           cardiac muscle in vertebrates. These pumps transfer Ca2+
           from the cytoplasm to the lumen of the endoplasmic
           reticulum. In humans and mice, at least, there are
           multiple isoforms of the SERCA pump with overlapping but
           not redundant functions. Defects in SERCA isoforms are
           associated with diseases in humans. The calcium P-type
           ATPases have been characterized as Type IIA based on a
           phylogenetic analysis which distinguishes this group
           from the Type IIB PMCA calcium pump modelled by
           TIGR01517. A separate analysis divides Type IIA into
           sub-types, SERCA and PMR1 the latter of which is
           modelled by TIGR01522 [Transport and binding proteins,
           Cations and iron carrying compounds].
          Length = 917

 Score = 26.3 bits (58), Expect = 8.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 6   GQGLQKVVEYSCLGDWFVDKNHFF 29
           G+ L KV+   C+  W ++  HF 
Sbjct: 201 GELLSKVIGLICILVWVINIGHFN 224


>gnl|CDD|222505 pfam14028, SpaB_C, SpaB C-terminal domain.  This presumed domain is
           found at the C-terminus of the SpaB protein. SpaB is
           involved in the synthesis of the lantibiotic subtilin.
           This family of proteins is found in bacteria and
           eukaryotes. Proteins in this family are typically
           between 317 and 1029 amino acids in length. The family
           is often found in association with pfam04737, pfam04738.
           This domain is found in isolation in some proteins. This
           domain is also found in EpiB involved in epidermin
           biosynthesis.
          Length = 259

 Score = 25.6 bits (56), Expect = 9.8
 Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 7/54 (12%)

Query: 76  RLHITPVKAEVVEPGCQLPQNFSGDWINTANIDADVFINETHIIETYYPDEGRY 129
           RL ++  +             +  +      I           + TY P+  RY
Sbjct: 49  RLRLSSEEPAAYGAVAARLAAWLRELRERGLIA-------RLTLATYEPETERY 95


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,138,959
Number of extensions: 611563
Number of successful extensions: 425
Number of sequences better than 10.0: 1
Number of HSP's gapped: 425
Number of HSP's successfully gapped: 17
Length of query: 143
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 56
Effective length of database: 7,078,804
Effective search space: 396413024
Effective search space used: 396413024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)