RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13331
         (143 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 31/142 (21%), Positives = 49/142 (34%), Gaps = 48/142 (33%)

Query: 7    QGLQKV----VEYSCLGDWFVDKNHFFAVANTKE--SRKDEKFRCFLKNRDDDLYIGVSI 60
            QG Q+       Y         K      A  ++  +R D  F+        D Y G SI
Sbjct: 1624 QGSQEQGMGMDLY---------KT--SKAA--QDVWNRADNHFK--------DTY-GFSI 1661

Query: 61   TAECSTLKTVEKSPERL--HITPVKAEVVEPGCQLPQNFSG---DWINTANIDAD-VF-- 112
                  L  V  +P  L  H    K      G ++ +N+S    + I    +  + +F  
Sbjct: 1662 ------LDIVINNPVNLTIHFGGEK------GKRIRENYSAMIFETIVDGKLKTEKIFKE 1709

Query: 113  INETHIIETYYPDEGRYRRTIY 134
            INE     T+  ++G    T +
Sbjct: 1710 INEHSTSYTFRSEKGLLSATQF 1731


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 32.1 bits (72), Expect = 0.034
 Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 15/43 (34%)

Query: 18  LGDWF------VDKNHFFAVANTKESRKDEKFRCFLKNRDDDL 54
           L +W       V+KN          +R  +K   F +  D D+
Sbjct: 120 LEEWNQRQSEQVEKNK-------INNRIADK--AFYQQPDADI 153


>3aqu_A AT4G19810; stress response, TIM barrel, hydrolase, chitin; HET:
          FLC; 2.01A {Arabidopsis thaliana}
          Length = 356

 Score = 25.3 bits (56), Expect = 8.1
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 18 LGDWFVDKNHFFAVANTKESRK 39
          +G    DK  + ++A+   SRK
Sbjct: 73 IGGGIADKTAYASMASNPTSRK 94


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0713    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,191,465
Number of extensions: 116158
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 7
Length of query: 143
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 59
Effective length of database: 4,356,429
Effective search space: 257029311
Effective search space used: 257029311
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.8 bits)