RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13331
         (143 letters)



>d2j0pa1 e.62.1.1 (A:4-341) Hemin transport protein HemS {Yersinia
           enterocolitica [TaxId: 630]}
          Length = 338

 Score = 24.0 bits (52), Expect = 8.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 99  GDWINTANIDADVFINETHIIETY 122
            DWIN  N    + + ET I E++
Sbjct: 264 QDWINVFNQRFTLHLIETTIAESW 287


>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus
           thermophilus [TaxId: 274]}
          Length = 394

 Score = 23.8 bits (51), Expect = 9.5
 Identities = 18/115 (15%), Positives = 35/115 (30%), Gaps = 7/115 (6%)

Query: 14  EYSCLGDWFVDKNHFFAVANTKESRKDEKFRCFLKNRDDDLYIGVSITAEC--STLKTVE 71
             +   D  VD          K  R D   +   +     LY  + +  E   + ++ + 
Sbjct: 79  HEATFADPMVD-----NRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQAMM 133

Query: 72  KSPERLHITPVKAEVVEPGCQLPQNFSGDWINTANIDADVFINETHIIETYYPDE 126
           ++PER       A V++P    P +++                    +  Y   E
Sbjct: 134 QAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMFQDLRGPRGGRGLLAYLRPE 188


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0646    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 548,982
Number of extensions: 23083
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 4
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.4 bits)