BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13333
(114 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BOP|A Chain A, Structure Of Mouse Beta-neurexin 2d4
pdb|3BOP|B Chain B, Structure Of Mouse Beta-neurexin 2d4
pdb|3BOP|C Chain C, Structure Of Mouse Beta-neurexin 2d4
Length = 175
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 4 VVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADA 63
V+F+ G + + PN G+YH +R R ATL QVDS+ E + A
Sbjct: 67 VIFNVGTDDITIDEPNAIVSDGKYHVVRFTRSGGNATL--QVDSWPVNERY-----PAGR 119
Query: 64 Q---FNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVRSIG 114
Q FN+ + IG F G VS + ++ + L L + D NVR+ G
Sbjct: 120 QLTIFNSQAAIKIG-GRDQGRPFQGQVSGLYYNGLKVLALAAESD--PNVRTEG 170
>pdb|3MW3|A Chain A, Crystal Structure Of Beta-Neurexin 2 With The Splice
Insert 4
Length = 208
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 4 VVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKE 52
V+F+ G + + PN G+YH +R R ATL QVDS+ E
Sbjct: 70 VIFNVGTDDITIDEPNAIVSDGKYHVVRFTRSGGNATL--QVDSWPVNE 116
>pdb|3B3Q|E Chain E, Crystal Structure Of A Synaptic Adhesion Complex
pdb|3B3Q|F Chain F, Crystal Structure Of A Synaptic Adhesion Complex
Length = 197
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 17/118 (14%)
Query: 2 LRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYE-----PKEFHFN 56
+ V F+ G + + N G+YH +R R ATL QVDS+ P
Sbjct: 76 IGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATL--QVDSWPVIERYPAGRQLT 133
Query: 57 IKDSADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVRSIG 114
I FN+ + IG E + F G +S + ++ + L + + D AN+ +G
Sbjct: 134 I-------FNSQATIIIGGKE-QGQPFQGQLSGLYYNGLKVLNMAAEND--ANIAIVG 181
>pdb|2WQZ|C Chain C, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2WQZ|D Chain D, Crystal Structure Of Synaptic Protein Neuroligin-4 In
Complex With Neurexin-beta 1: Alternative Refinement
pdb|2XB6|C Chain C, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
pdb|2XB6|D Chain D, Revisited Crystal Structure Of Neurexin1beta-neuroligin4
Complex
Length = 179
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 17/118 (14%)
Query: 2 LRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYE-----PKEFHFN 56
+ V F+ G + + N G+YH +R R ATL QVDS+ P
Sbjct: 69 IGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATL--QVDSWPVIERYPAGRQLT 126
Query: 57 IKDSADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVRSIG 114
I FN+ + IG E + F G +S + ++ + L + + D AN+ +G
Sbjct: 127 I-------FNSQATIIIGGKE-QGQPFQGQLSGLYYNGLKVLNMAAEND--ANIAIVG 174
>pdb|3BOD|A Chain A, Structure Of Mouse Beta-Neurexin 1
Length = 178
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 17/118 (14%)
Query: 2 LRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYE-----PKEFHFN 56
+ V F+ G + + N G+YH +R R ATL QVDS+ P
Sbjct: 68 IGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATL--QVDSWPVIERYPAGRQLT 125
Query: 57 IKDSADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVRSIG 114
I FN+ + IG E + F G +S + ++ + L + + D AN+ +G
Sbjct: 126 I-------FNSQATIIIGGKE-QGQPFQGQLSGLYYNGLKVLNMAAEND--ANIAIVG 173
>pdb|3BIW|E Chain E, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|F Chain F, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|G Chain G, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|H Chain H, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
Length = 243
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 17/118 (14%)
Query: 2 LRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYE-----PKEFHFN 56
+ V F+ G + + N G+YH +R R ATL QVDS+ P
Sbjct: 116 IGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATL--QVDSWPVIERYPAGRQLT 173
Query: 57 IKDSADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVRSIG 114
I FN+ + IG E + F G +S + ++ + L + + D AN+ +G
Sbjct: 174 I-------FNSQATIIIGGKE-QGQPFQGQLSGLYYNGLKVLNMAAEND--ANIAIVG 221
>pdb|1C4R|A Chain A, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|B Chain B, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|C Chain C, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|D Chain D, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|E Chain E, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|F Chain F, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|G Chain G, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|H Chain H, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
Length = 182
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 17/118 (14%)
Query: 2 LRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYE-----PKEFHFN 56
+ V F+ G + + N G+YH +R R ATL QVDS+ P
Sbjct: 68 IGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATL--QVDSWPVIERYPAGRQLT 125
Query: 57 IKDSADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVRSIG 114
I FN+ + IG E + F G +S + ++ + L + + D AN+ +G
Sbjct: 126 I-------FNSQATIIIGGKE-QGQPFQGQLSGLYYNGLKVLNMAAEND--ANIAIVG 173
>pdb|3VKF|C Chain C, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
pdb|3VKF|D Chain D, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
Length = 181
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 17/118 (14%)
Query: 2 LRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYE-----PKEFHFN 56
+ V F+ G + + N G+YH +R R ATL QVDS+ P
Sbjct: 67 IGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATL--QVDSWPVIERYPAGRQLT 124
Query: 57 IKDSADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVRSIG 114
I FN+ + IG E + F G +S + ++ + L + + D AN+ +G
Sbjct: 125 I-------FNSQATIIIGGKE-QGQPFQGQLSGLYYNGLKVLNMAAEND--ANIAIVG 172
>pdb|2R1D|A Chain A, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|B Chain B, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|C Chain C, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|D Chain D, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|E Chain E, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|F Chain F, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|G Chain G, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|H Chain H, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|I Chain I, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
pdb|2R1D|W Chain W, Crystal Structure Of Rat Neurexin 1beta In The Ca2+
Containing Form
Length = 226
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 17/118 (14%)
Query: 2 LRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYE-----PKEFHFN 56
+ V F+ G + + N G+YH +R R ATL QVDS+ P
Sbjct: 102 IGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATL--QVDSWPVIERYPAGRQLT 159
Query: 57 IKDSADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVRSIG 114
I FN+ + IG E + F G +S + ++ + L + + D AN+ +G
Sbjct: 160 I-------FNSQATIIIGGKE-QGQPFQGQLSGLYYNGLKVLNMAAEND--ANIAIVG 207
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 15/97 (15%)
Query: 25 GQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQ---FNNIQYMYIGRNESMTE 81
G+YH +R R ATL QVDS+ E + A Q FN+ + IG E +
Sbjct: 1152 GKYHVVRFTRSGGNATL--QVDSWPVIE-----RYPAGRQLTIFNSQATIIIGGKEQ-GQ 1203
Query: 82 GFIGCVSRVEFDDIYPLKLLFQEDGP----ANVRSIG 114
F G +S + ++ + L + + D NVR +G
Sbjct: 1204 PFQGQLSGLYYNGLKVLNMAAENDANIAIVGNVRLVG 1240
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No Splice
Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No Splice
Inserts
Length = 1245
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 15/97 (15%)
Query: 25 GQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQ---FNNIQYMYIGRNESMTE 81
G+YH +R R ATL QVDS+ E + A Q FN+ + IG E +
Sbjct: 1143 GKYHVVRFTRSGGNATL--QVDSWPVIE-----RYPAGRQLTIFNSQATIIIGGKEQ-GQ 1194
Query: 82 GFIGCVSRVEFDDIYPLKLLFQEDGP----ANVRSIG 114
F G +S + ++ + L + + D NVR +G
Sbjct: 1195 PFQGQLSGLYYNGLKVLNMAAENDANIAIVGNVRLVG 1231
>pdb|3ASI|A Chain A, Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns6
Length = 410
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 15/97 (15%)
Query: 25 GQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQ---FNNIQYMYIGRNESMTE 81
G+YH +R R ATL QVDS+ E + A Q FN+ + IG E +
Sbjct: 311 GKYHVVRFTRSGGNATL--QVDSWPVIE-----RYPAGRQLTIFNSQATIIIGGKEQ-GQ 362
Query: 82 GFIGCVSRVEFDDIYPLKLLFQEDGP----ANVRSIG 114
F G +S + ++ + L + + D NVR +G
Sbjct: 363 PFQGQLSGLYYNGLKVLNMAAENDANIAIVGNVRLVG 399
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 25 GQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQ---FNNIQYMYIGRNESMTE 81
G+YH +R R ATL QVDS+ E + A Q FN+ + IG E +
Sbjct: 927 GKYHVVRFTRSGGNATL--QVDSWPVIE-----RYPAGRQLTIFNSQATIIIGGKEQ-GQ 978
Query: 82 GFIGCVSRVEFDDIYPLKLLFQEDGPANVRSIG 114
F G +S + ++ + L + + D AN+ +G
Sbjct: 979 PFQGQLSGLYYNGLKVLNMAAEND--ANIAIVG 1009
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.144 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,371,313
Number of Sequences: 62578
Number of extensions: 126109
Number of successful extensions: 247
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 16
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)