Query psy13333
Match_columns 114
No_of_seqs 106 out of 280
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 16:47:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13333.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13333hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3516|consensus 99.9 8.1E-23 1.8E-27 181.8 8.8 104 1-110 1069-1184(1306)
2 PF00054 Laminin_G_1: Laminin 99.8 1.8E-19 4E-24 126.2 11.7 90 1-95 30-128 (131)
3 smart00282 LamG Laminin G doma 99.8 1.9E-18 4.2E-23 119.6 10.3 89 2-95 39-135 (135)
4 KOG3516|consensus 99.8 8.1E-19 1.8E-23 156.5 9.5 92 2-97 846-938 (1306)
5 PF02210 Laminin_G_2: Laminin 99.8 1E-17 2.2E-22 112.9 12.0 90 1-95 30-128 (128)
6 cd00110 LamG Laminin G domain; 99.7 3.6E-16 7.9E-21 108.6 9.8 86 2-93 58-151 (151)
7 KOG3514|consensus 99.2 5.1E-11 1.1E-15 106.8 8.2 104 1-110 498-614 (1591)
8 KOG4289|consensus 98.8 6.4E-09 1.4E-13 95.8 6.2 102 2-105 1374-1490(2531)
9 KOG1219|consensus 98.8 1.1E-08 2.5E-13 97.0 7.5 98 1-103 3739-3844(4289)
10 KOG3514|consensus 98.7 5.9E-08 1.3E-12 87.6 7.6 97 2-104 1121-1218(1591)
11 smart00210 TSPN Thrombospondin 98.6 8.2E-07 1.8E-11 65.6 10.3 76 13-93 105-181 (184)
12 KOG4289|consensus 97.7 4.4E-05 9.5E-10 71.4 5.4 83 5-98 1600-1685(2531)
13 PF13385 Laminin_G_3: Concanav 97.4 0.00029 6.3E-09 47.6 4.6 68 19-92 79-146 (157)
14 cd00152 PTX Pentraxins are pla 97.0 0.0094 2E-07 44.4 9.6 71 21-95 86-164 (201)
15 smart00159 PTX Pentraxin / C-r 97.0 0.0088 1.9E-07 44.8 9.4 71 21-95 86-164 (206)
16 smart00560 LamGL LamG-like jel 95.3 0.088 1.9E-06 36.5 6.5 62 25-93 61-126 (133)
17 PF00354 Pentaxin: Pentaxin fa 94.7 0.88 1.9E-05 34.0 10.8 71 21-95 80-158 (195)
18 KOG3509|consensus 85.6 0.41 8.9E-06 44.0 1.4 85 3-96 293-387 (964)
19 KOG1836|consensus 79.3 1.7 3.6E-05 42.4 2.9 75 21-105 1613-1695(1705)
20 PF06439 DUF1080: Domain of Un 68.5 10 0.00022 26.7 4.2 32 21-54 123-154 (185)
21 PF07622 DUF1583: Protein of u 66.8 11 0.00024 31.7 4.5 42 20-65 85-126 (399)
22 PF00139 Lectin_legB: Legume l 62.5 9 0.0002 29.0 3.1 29 20-48 162-190 (236)
23 cd01951 lectin_L-type legume l 55.7 28 0.0006 25.8 4.7 25 25-49 154-178 (223)
24 PF14607 GxDLY: N-terminus of 50.8 54 0.0012 23.8 5.3 49 24-75 92-140 (147)
25 cd06899 lectin_legume_LecRK_Ar 47.9 27 0.00059 26.5 3.6 28 21-48 159-186 (236)
26 TIGR03436 acidobact_VWFA VWFA- 44.4 42 0.00091 25.8 4.2 25 12-36 257-282 (296)
27 cd04508 TUDOR Tudor domains ar 43.8 26 0.00056 19.4 2.3 26 23-48 10-35 (48)
28 KOG1834|consensus 37.6 1.5E+02 0.0032 27.3 6.8 75 13-92 430-514 (952)
29 PF02973 Sialidase: Sialidase, 32.6 1.5E+02 0.0032 22.5 5.4 73 21-95 99-176 (190)
30 PF13501 SoxY: Sulfur oxidatio 32.1 87 0.0019 21.5 3.8 28 2-31 74-101 (111)
31 PF14099 Polysacc_lyase: Polys 31.4 1.9E+02 0.0042 21.1 5.9 60 16-75 143-205 (224)
32 PF00567 TUDOR: Tudor domain; 27.8 76 0.0016 20.1 2.8 28 23-50 64-92 (121)
33 PF00609 DAGK_acc: Diacylglyce 24.6 82 0.0018 22.4 2.7 22 26-49 140-161 (161)
34 cd00413 Glyco_hydrolase_16 gly 24.4 2.6E+02 0.0056 20.0 5.4 49 23-76 140-188 (210)
35 PF09061 Stirrup: Stirrup; In 21.6 42 0.00091 21.6 0.6 12 18-29 35-46 (79)
No 1
>KOG3516|consensus
Probab=99.88 E-value=8.1e-23 Score=181.76 Aligned_cols=104 Identities=38% Similarity=0.627 Sum_probs=95.2
Q ss_pred CeEEEEEcCC-eeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCC--
Q psy13333 1 HLRVVFDFGF-ERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNE-- 77 (114)
Q Consensus 1 ~Lq~ry~Lg~-~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~-- 77 (114)
+||+||+||+ .+.+++++.+||+|||.|+++|.|.. +++++|||+++++++.+ +.+++|+.+++|++|++.
T Consensus 1069 sLq~ry~lg~~e~~~~~~~~kn~~~gq~H~i~i~r~~--~~~~i~vD~y~~~~y~~----~~~~~~~~~ksl~lg~v~e~ 1142 (1306)
T KOG3516|consen 1069 SLQTRYMLGFREPFEYQFKDKNIALGQPHDINITRGP--RTVFLEVDGYLKVEYTF----SIDVDFQSPKSLTLGPVTET 1142 (1306)
T ss_pred ceEEEEecCCcCceEEecccccccCCCceEEEEecCC--ceEEEEecCccceeeec----ccceeecccchhhccceeec
Confidence 6999999999 55999999999999999999999999 99999999999999994 569999999999999962
Q ss_pred ---------ccCccceeeeceeEEcChhhhhhhccCCCCCCc
Q psy13333 78 ---------SMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANV 110 (114)
Q Consensus 78 ---------~~~~GF~GCls~v~~N~i~plk~a~~~~~~~~v 110 (114)
.+++||.||+|+||||+++|||+|++++..+++
T Consensus 1143 ~~~d~~~~k~~t~gF~GClS~Vqf~~vaPLK~~~~~~~~~~~ 1184 (1306)
T KOG3516|consen 1143 ANIDHEISKYNTPGFGGCLSRVQFNDVAPLKAAFRTEVFIIV 1184 (1306)
T ss_pred cCCChhHHhhcCCCccceeeEEEccccccchhccccCCceeE
Confidence 459999999999999999999999999855443
No 2
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
Probab=99.82 E-value=1.8e-19 Score=126.19 Aligned_cols=90 Identities=19% Similarity=0.359 Sum_probs=75.0
Q ss_pred CeEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCC---
Q psy13333 1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNE--- 77 (114)
Q Consensus 1 ~Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~--- 77 (114)
+|+++|++|+++..+.+.. +++||+||+|.++|+. +.++|+||.....+... +.+...++++...|||||.+
T Consensus 30 ~l~~~~~~G~~~~~~~~~~-~i~dg~wh~v~~~r~~--~~~~L~Vd~~~~~~~~s--~~~~~~~l~~~~~lyvGG~p~~~ 104 (131)
T PF00054_consen 30 RLEFRYNLGSGPASLRSPQ-KINDGKWHTVSVSRNG--RNGSLSVDGEEVVTGES--PSGATQSLDVDGPLYVGGLPSSS 104 (131)
T ss_dssp EEEEEEESSSEEEEEEESS-ETTSSSEEEEEEEEET--TEEEEEETTSEEEEEEE--CSSSSSSCEECSEEEESSSSTTT
T ss_pred EEEEEEeCCCccceecCCC-ccCCCcceEEEEEEcC--cEEEEEECCccceeeec--CCccccccccccCEEEccCCchh
Confidence 4899999999998887655 4999999999999998 99999999988756653 22344469999999999986
Q ss_pred ------ccCccceeeeceeEEcCh
Q psy13333 78 ------SMTEGFIGCVSRVEFDDI 95 (114)
Q Consensus 78 ------~~~~GF~GCls~v~~N~i 95 (114)
....||.|||+++.+|+.
T Consensus 105 ~~~~~~~~~~~f~GCi~~~~in~~ 128 (131)
T PF00054_consen 105 SRPRPLPISPGFKGCIRNLSINGK 128 (131)
T ss_dssp GCGSSCSCCSB-EEEEEEEEETTE
T ss_pred hcccccccCCCeeEEEEEeEECCE
Confidence 348999999999999985
No 3
>smart00282 LamG Laminin G domain.
Probab=99.78 E-value=1.9e-18 Score=119.64 Aligned_cols=89 Identities=21% Similarity=0.361 Sum_probs=73.6
Q ss_pred eEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCc---
Q psy13333 2 LRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNES--- 78 (114)
Q Consensus 2 Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~--- 78 (114)
|.++|++|.++..++....+++||+||+|.|+|+. +.+.|+||......... +++...++....|||||...
T Consensus 39 l~~~~~~g~~~~~~~~~~~~~~dg~WH~v~i~~~~--~~~~l~VD~~~~~~~~~---~~~~~~l~~~~~l~iGG~p~~~~ 113 (135)
T smart00282 39 LVLRYDLGSGPARLTSDPTPLNDGQWHRVAVERNG--RRVTLSVDGENPVSGES---PGGLTILNLDGPLYLGGLPEDLK 113 (135)
T ss_pred EEEEEECCCCCEEEEECCeEeCCCCEEEEEEEEeC--CEEEEEECCCccccEEC---CCCceEEecCCCcEEccCCchhc
Confidence 67899999888777776578999999999999998 99999999866555442 14456788889999999752
Q ss_pred -----cCccceeeeceeEEcCh
Q psy13333 79 -----MTEGFIGCVSRVEFDDI 95 (114)
Q Consensus 79 -----~~~GF~GCls~v~~N~i 95 (114)
...||.|||++|++|+.
T Consensus 114 ~~~~~~~~~F~GCi~~v~in~~ 135 (135)
T smart00282 114 LPPLLVTPGFRGCIRNLKVNGK 135 (135)
T ss_pred ccccccCCCCeeEeeEEEECCC
Confidence 37899999999999973
No 4
>KOG3516|consensus
Probab=99.77 E-value=8.1e-19 Score=156.52 Aligned_cols=92 Identities=18% Similarity=0.365 Sum_probs=82.8
Q ss_pred eEEEEEcCCeeEEEEecCc-cCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCccC
Q psy13333 2 LRVVFDFGFERQELIFPNK-HFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNESMT 80 (114)
Q Consensus 2 Lq~ry~Lg~~~~~l~~~~~-~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~~~ 80 (114)
++|.|+.|.|+.++++... ++||+|||+|++||+. |+++||||+.++..++. |+..-..|.+..+||+|++.+.+
T Consensus 846 vtf~~dvgnGp~~~~V~s~t~~nD~qWH~V~~Ern~--K~a~LqVD~~~~~~r~s--p~~~~~~L~l~s~l~vGgt~~~~ 921 (1306)
T KOG3516|consen 846 VTFAFDVGNGPSQLTVRSPTELNDNQWHQVRAERNS--KEASLQVDGLPKSIRTS--PIPGTRLLQLYSSLFVGGTVSRQ 921 (1306)
T ss_pred eEEEEEcCCCceeEEEcCCcccCCCceEEEEEEecc--ccceEEEcCcccceecC--CCCCEEEEEeccceeccccccCc
Confidence 6899999999977777654 9999999999999999 99999999999999884 33556689999999999999999
Q ss_pred ccceeeeceeEEcChhh
Q psy13333 81 EGFIGCVSRVEFDDIYP 97 (114)
Q Consensus 81 ~GF~GCls~v~~N~i~p 97 (114)
+||.|||+++++||+..
T Consensus 922 ~gF~GCIRsl~LNGv~l 938 (1306)
T KOG3516|consen 922 RGFLGCIRSLQLNGVML 938 (1306)
T ss_pred Ccceeeeeeeeecceee
Confidence 99999999999999964
No 5
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=99.77 E-value=1e-17 Score=112.91 Aligned_cols=90 Identities=23% Similarity=0.436 Sum_probs=73.5
Q ss_pred CeEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcc-eeeceeeEEEccCCcc
Q psy13333 1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADA-QFNNIQYMYIGRNESM 79 (114)
Q Consensus 1 ~Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~-~ln~~~~L~lGg~~~~ 79 (114)
.|.++|++|...........+++||+||.|.++|.. +.+.|.||......... +.... .++....|||||....
T Consensus 30 ~l~~~~~~g~~~~~~~~~~~~~~dg~wh~v~i~~~~--~~~~l~Vd~~~~~~~~~---~~~~~~~~~~~~~l~iGg~~~~ 104 (128)
T PF02210_consen 30 RLVVRYNLGGSEIVTTFSNSNLNDGQWHKVSISRDG--NRVTLTVDGQSVSSESL---PSSSSDSLDPDGSLYIGGLPES 104 (128)
T ss_dssp EEEEEEESSSSEEEEEECSSSSTSSSEEEEEEEEET--TEEEEEETTSEEEEEES---SSTTHHCBESEEEEEESSTTTT
T ss_pred EEEEEEEccccceeeeccCccccccceeEEEEEEee--eeEEEEecCccceEEec---cccceecccCCCCEEEecccCc
Confidence 378999999666555556679999999999999999 99999999998887763 13332 7899999999997422
Q ss_pred --------CccceeeeceeEEcCh
Q psy13333 80 --------TEGFIGCVSRVEFDDI 95 (114)
Q Consensus 80 --------~~GF~GCls~v~~N~i 95 (114)
..||.|||+.+++||.
T Consensus 105 ~~~~~~~~~~~f~Gci~~l~vng~ 128 (128)
T PF02210_consen 105 NQPSGSVDTPGFVGCIRDLRVNGQ 128 (128)
T ss_dssp CTCTTSSTTSB-EEEEEEEEETTE
T ss_pred cccccccCCCCcEEEcCeEEECCC
Confidence 8999999999999984
No 6
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=99.68 E-value=3.6e-16 Score=108.63 Aligned_cols=86 Identities=22% Similarity=0.400 Sum_probs=66.5
Q ss_pred eEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCc---
Q psy13333 2 LRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNES--- 78 (114)
Q Consensus 2 Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~--- 78 (114)
|.+.|+.|.....++... +++||+||+|.|+|.. ..+.|+||.....+... + .....++....+||||...
T Consensus 58 l~~~~~~g~~~~~~~~~~-~v~dg~Wh~v~i~~~~--~~~~l~VD~~~~~~~~~--~-~~~~~~~~~~~~~iGg~~~~~~ 131 (151)
T cd00110 58 LVLRYDLGSGSLVLSSKT-PLNDGQWHSVSVERNG--RSVTLSVDGERVVESGS--P-GGSALLNLDGPLYLGGLPEDLK 131 (151)
T ss_pred EEEEEcCCcccEEEEccC-ccCCCCEEEEEEEECC--CEEEEEECCccEEeeeC--C-CCceeecCCCCeEEcCCCCchh
Confidence 567777775556665433 7999999999999998 99999999985444431 1 2222578999999999753
Q ss_pred -----cCccceeeeceeEEc
Q psy13333 79 -----MTEGFIGCVSRVEFD 93 (114)
Q Consensus 79 -----~~~GF~GCls~v~~N 93 (114)
...||.|||++|++|
T Consensus 132 ~~~~~~~~~F~Gci~~v~in 151 (151)
T cd00110 132 SPGLPVSPGFVGCIRDLKVN 151 (151)
T ss_pred cccccccCCCceEeeEeEeC
Confidence 378999999999987
No 7
>KOG3514|consensus
Probab=99.20 E-value=5.1e-11 Score=106.79 Aligned_cols=104 Identities=20% Similarity=0.427 Sum_probs=80.8
Q ss_pred CeEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCC---
Q psy13333 1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNE--- 77 (114)
Q Consensus 1 ~Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~--- 77 (114)
||-+-.|||+|-..++-..+.++||+||+|.+.|+. +.+++.||.- +..+. .|+...-|++...||||-..
T Consensus 498 hlyl~ldlGSG~iklras~rkv~DGeWhhv~l~R~g--R~gsvsVd~~-~~df~---tpG~s~iL~ld~~mylG~~~n~l 571 (1591)
T KOG3514|consen 498 HLYLLLDLGSGVIKLRASSRKVNDGEWHHVDLQRDG--RTGSVSVDAI-KTDFS---TPGDSEILDLDDPMYLGEVPNNL 571 (1591)
T ss_pred eEEEEEecCCceEEeeeecccccCCceEEEEeeccC--ccceEEEeee-ecCcc---CCCcceeEeecCceeeccCCCCc
Confidence 577888999999888877789999999999999998 9999999972 12232 22444568999999999653
Q ss_pred ---------ccCccceeeeceeEEcChh-hhhhhccCCCCCCc
Q psy13333 78 ---------SMTEGFIGCVSRVEFDDIY-PLKLLFQEDGPANV 110 (114)
Q Consensus 78 ---------~~~~GF~GCls~v~~N~i~-plk~a~~~~~~~~v 110 (114)
....||+|||+++.++|+. -+.+..+..+++.|
T Consensus 572 ~~P~~vWta~L~~GyvGCirdl~i~G~s~di~q~ae~q~sagv 614 (1591)
T KOG3514|consen 572 VYPSEVWTAALRKGYVGCIRDLFIDGVSTDIRQEAEAQNSAGV 614 (1591)
T ss_pred cCcHHHHHHHHhccchheehhheecceehhhHHHhhhcccccc
Confidence 2289999999999999996 45555554444444
No 8
>KOG4289|consensus
Probab=98.82 E-value=6.4e-09 Score=95.75 Aligned_cols=102 Identities=16% Similarity=0.302 Sum_probs=75.9
Q ss_pred eEEEEEcCCeeEEEEecC-ccCCCCCceEEEEEEecCCCEEEEEECCCCCe-EEEee-cC--------CCCcceeeceee
Q psy13333 2 LRVVFDFGFERQELIFPN-KHFGLGQYHDIRIRRKNSGATLLMQVDSYEPK-EFHFN-IK--------DSADAQFNNIQY 70 (114)
Q Consensus 2 Lq~ry~Lg~~~~~l~~~~-~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~-~~~~~-l~--------~~~~~~ln~~~~ 70 (114)
+|+.|.+|....++...- .-++|||||+|.++..+ |.+.+.||+-... ...+- ++ .++..-|++..+
T Consensus 1374 vqltfS~Ges~t~v~p~Vp~gvsDGqWHtV~l~YyN--K~av~svDdCdt~~al~fg~~gNCAa~g~q~~sKKsLDltgp 1451 (2531)
T KOG4289|consen 1374 VQLTFSAGESTTTVSPDVPGGVSDGQWHTVQLEYYN--KVAVVSVDDCDTNVALRFGTIGNCAAQGTQTGSKKSLDLTGP 1451 (2531)
T ss_pred EEEEEecccccceecCCCCCCcccCceeEEEEEEec--eEEEEEeccccccceeeecCccchHhhhhccCcceeeeccCc
Confidence 678888886556664432 37999999999999998 9999999984322 21110 00 023345899999
Q ss_pred EEEccCCc----cCccceeeeceeEEcChhhhhhhccCC
Q psy13333 71 MYIGRNES----MTEGFIGCVSRVEFDDIYPLKLLFQED 105 (114)
Q Consensus 71 L~lGg~~~----~~~GF~GCls~v~~N~i~plk~a~~~~ 105 (114)
|+|||++. ..+-|+||||++++.+...-+|++-.+
T Consensus 1452 LlLGGvPe~fpv~~k~FvGCmrdLsvD~~~VDma~fian 1490 (2531)
T KOG4289|consen 1452 LLLGGVPETFPVIEKQFVGCMRDLSVDGRDVDMATFIAN 1490 (2531)
T ss_pred eeecCCCCcchhhHhHhhhhhhhcccccccccHHHHHhh
Confidence 99999863 378899999999999998888887643
No 9
>KOG1219|consensus
Probab=98.80 E-value=1.1e-08 Score=96.97 Aligned_cols=98 Identities=16% Similarity=0.229 Sum_probs=80.9
Q ss_pred CeEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCC---
Q psy13333 1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNE--- 77 (114)
Q Consensus 1 ~Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~--- 77 (114)
++|+.|+=|+|+-.+.+..+..+|||||.|-++|+. .-++|.||+..-..... |+..+.+|+...||+|+.-
T Consensus 3739 ~~~l~~~cgsG~Givg~q~~~VnDgqWHsialerrr--~~irlsvDd~~~~~atv---Pg~~~tln~d~hiy~Ga~vrlr 3813 (4289)
T KOG1219|consen 3739 SPQLLADCGSGPGIVGSQKRTVNDGQWHSIALERRR--NHIRLSVDDDTYDSATV---PGMKSTLNLDTHIYLGALVRLR 3813 (4289)
T ss_pred cEEEEEecCCCCCcccccceEeecCceeEEEeeccC--CceEEEEcccCceeeec---ccceeeccccceEEEeeEeeec
Confidence 468888889999666665579999999999999999 99999999977776663 3667779999999999842
Q ss_pred -----ccCccceeeeceeEEcChhhhhhhcc
Q psy13333 78 -----SMTEGFIGCVSRVEFDDIYPLKLLFQ 103 (114)
Q Consensus 78 -----~~~~GF~GCls~v~~N~i~plk~a~~ 103 (114)
..+.||.|||.++.+||.+..+.+-.
T Consensus 3814 ~~~~tqvs~Gf~GCldsiyLng~el~l~~k~ 3844 (4289)
T KOG1219|consen 3814 HQRSTQVSYGFDGCLDSIYLNGMELPLTRKG 3844 (4289)
T ss_pred cCCCccccccccceeeeEEEccccccccCCC
Confidence 23899999999999999987665543
No 10
>KOG3514|consensus
Probab=98.67 E-value=5.9e-08 Score=87.65 Aligned_cols=97 Identities=25% Similarity=0.352 Sum_probs=79.0
Q ss_pred eEEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCc-ceeeceeeEEEccCCccC
Q psy13333 2 LRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSAD-AQFNNIQYMYIGRNESMT 80 (114)
Q Consensus 2 Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~-~~ln~~~~L~lGg~~~~~ 80 (114)
|-+-|++|+-...+.-....+|||.+|-||++|.+ .+++||||..+...+. |.+.+ +-||....+-|||.. +.
T Consensus 1121 igvvfNiGt~Diti~E~~~ivNDgkYHVVRFtR~G--GNATLQVD~wpV~e~y---P~grqlTiFNtqa~I~IGGk~-qG 1194 (1591)
T KOG3514|consen 1121 IGVVFNIGTDDITISEHNAIVNDGKYHVVRFTRSG--GNATLQVDSWPVNERY---PAGRQLTIFNSQARISIGGKF-QG 1194 (1591)
T ss_pred EEEEEeccCcccccccccccccCCceEEEEEEecC--CceEEEecccchhhcc---CCCceeEEeeccceEEecccc-cC
Confidence 44678888866555434468999999999999998 8999999999987764 33332 358999999999976 45
Q ss_pred ccceeeeceeEEcChhhhhhhccC
Q psy13333 81 EGFIGCVSRVEFDDIYPLKLLFQE 104 (114)
Q Consensus 81 ~GF~GCls~v~~N~i~plk~a~~~ 104 (114)
+.|-|-||.+-+||...|..|-+.
T Consensus 1195 RpFqGqiSGLyyNgLkVLdlAaE~ 1218 (1591)
T KOG3514|consen 1195 RPFQGQISGLYYNGLKVLDLAAEN 1218 (1591)
T ss_pred CcccceecceEEcceeeeehhhcc
Confidence 589999999999999999888765
No 11
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=98.58 E-value=8.2e-07 Score=65.57 Aligned_cols=76 Identities=13% Similarity=0.223 Sum_probs=53.3
Q ss_pred EEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccC-CccCccceeeeceeE
Q psy13333 13 QELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRN-ESMTEGFIGCVSRVE 91 (114)
Q Consensus 13 ~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~-~~~~~GF~GCls~v~ 91 (114)
..+.++..+|+||+||+|.+.-.. ..++|-||-....... |+.+....++ ..+.++++. .....-|.|||..++
T Consensus 105 ~~~~f~~~~l~dg~WH~lal~V~~--~~v~LyvDC~~~~~~~--l~~~~~~~~~-~~g~~~~g~~~~~~~~f~G~lq~l~ 179 (184)
T smart00210 105 HTVSFRNLPLADGQWHKLALSVSG--SSATLYVDCNEIDSRP--LDRPGQPPID-TDGIEVRGAQAADRKPFQGDLQQLK 179 (184)
T ss_pred EEEeecCCccccCCceEEEEEEeC--CEEEEEECCcccccee--cCCccccccc-ccceEEEeeccCCCCcceEEeEEEE
Confidence 445555568999999999999998 8999999997766665 3322222344 444555544 333557999999997
Q ss_pred Ec
Q psy13333 92 FD 93 (114)
Q Consensus 92 ~N 93 (114)
+-
T Consensus 180 i~ 181 (184)
T smart00210 180 IV 181 (184)
T ss_pred Ee
Confidence 63
No 12
>KOG4289|consensus
Probab=97.75 E-value=4.4e-05 Score=71.39 Aligned_cols=83 Identities=19% Similarity=0.363 Sum_probs=55.8
Q ss_pred EEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECCCCCe-EEEeecCCCCcceeeceeeEEEccCC--ccCc
Q psy13333 5 VFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPK-EFHFNIKDSADAQFNNIQYMYIGRNE--SMTE 81 (114)
Q Consensus 5 ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~-~~~~~l~~~~~~~ln~~~~L~lGg~~--~~~~ 81 (114)
.|+.+... +..+....+||+||++.|+=.. ...+..|...-. +.. .+-..|++ ++||+||.. ....
T Consensus 1600 ~~~v~~s~--v~L~~~~vtdg~Wh~~~i~l~~---d~~~t~d~g~~~aea~-----~gl~gl~l-~sl~vGgap~~g~p~ 1668 (2531)
T KOG4289|consen 1600 KYNVGDSS--VELPAPRVTDGHWHHLVIELEA---DSVATLDYGIYQAEAK-----AGLSGLNL-ESLYVGGAPATGVPR 1668 (2531)
T ss_pred EEEecCce--EEccCccccCCchhheeeeecc---CeEEEEechhhhhhhh-----cCCCCcee-eEEEEccccCCCccc
Confidence 45555432 3334457899999999999885 566666653221 111 12234554 489999985 4599
Q ss_pred cceeeeceeEEcChhhh
Q psy13333 82 GFIGCVSRVEFDDIYPL 98 (114)
Q Consensus 82 GF~GCls~v~~N~i~pl 98 (114)
||+|||..|.+.|+..|
T Consensus 1669 gf~GCiqgV~v~g~~~l 1685 (2531)
T KOG4289|consen 1669 GFRGCIQGVRVGGVSIL 1685 (2531)
T ss_pred cchhhhhceEECCEeec
Confidence 99999999999988644
No 13
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=97.40 E-value=0.00029 Score=47.60 Aligned_cols=68 Identities=12% Similarity=0.254 Sum_probs=45.4
Q ss_pred CccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCccCccceeeeceeEE
Q psy13333 19 NKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNESMTEGFIGCVSRVEF 92 (114)
Q Consensus 19 ~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~~~~GF~GCls~v~~ 92 (114)
..++.+++||+|.+.... ..++|-||......... ...........++||+.......|.|-|.++++
T Consensus 79 ~~~~~~~~W~~l~~~~~~--~~~~lyvnG~~~~~~~~----~~~~~~~~~~~~~iG~~~~~~~~~~g~i~~~~i 146 (157)
T PF13385_consen 79 DSNLPDNKWHHLALTYDG--STVTLYVNGELVGSSTI----PSNISLNSNGPLFIGGSGGGSSPFNGYIDDLRI 146 (157)
T ss_dssp BS---TT-EEEEEEEEET--TEEEEEETTEEETTCTE----ESSSSTTSCCEEEESS-STT--B-EEEEEEEEE
T ss_pred CcccCCCCEEEEEEEEEC--CeEEEEECCEEEEeEec----cCCcCCCCcceEEEeecCCCCCceEEEEEEEEE
Confidence 357889999999999997 89999999854433321 122224677789999987668889999999976
No 14
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=97.01 E-value=0.0094 Score=44.39 Aligned_cols=71 Identities=15% Similarity=0.248 Sum_probs=50.5
Q ss_pred cCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCC-------ccCccceeeeceeEE-
Q psy13333 21 HFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNE-------SMTEGFIGCVSRVEF- 92 (114)
Q Consensus 21 ~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~-------~~~~GF~GCls~v~~- 92 (114)
+..||+||+|-++.+.....+.|-||........+ .....+.....|.||... .....|.|.|+.|++
T Consensus 86 ~~~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~~----~~~~~~~~~g~l~lG~~q~~~gg~~~~~~~f~G~I~~v~iw 161 (201)
T cd00152 86 PESDGAWHHICVTWESTSGIAELWVNGKLSVRKSL----KKGYTVGPGGSIILGQEQDSYGGGFDATQSFVGEISDVNMW 161 (201)
T ss_pred cCCCCCEEEEEEEEECCCCcEEEEECCEEeccccc----cCCCEECCCCeEEEeecccCCCCCCCCCcceEEEEceeEEE
Confidence 56999999999999863356889999865443321 233456777789999743 126789999999954
Q ss_pred cCh
Q psy13333 93 DDI 95 (114)
Q Consensus 93 N~i 95 (114)
+..
T Consensus 162 ~~~ 164 (201)
T cd00152 162 DSV 164 (201)
T ss_pred ccc
Confidence 543
No 15
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=97.01 E-value=0.0088 Score=44.82 Aligned_cols=71 Identities=15% Similarity=0.244 Sum_probs=51.4
Q ss_pred cCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCCc-------cCccceeeeceeEE-
Q psy13333 21 HFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNES-------MTEGFIGCVSRVEF- 92 (114)
Q Consensus 21 ~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~~-------~~~GF~GCls~v~~- 92 (114)
++.||+||+|-++.+.....+.|-||........ + .....+.....|.||..+. ....|.|-|+.|++
T Consensus 86 ~~~~g~W~hvc~tw~~~~g~~~lyvnG~~~~~~~--~--~~g~~i~~~G~lvlGq~qd~~gg~f~~~~~f~G~i~~v~iw 161 (206)
T smart00159 86 PESDGKWHHICTTWESSSGIAELWVDGKPGVRKG--L--AKGYTVKPGGSIILGQEQDSYGGGFDATQSFVGEIGDLNMW 161 (206)
T ss_pred cccCCceEEEEEEEECCCCcEEEEECCEEccccc--c--cCCcEECCCCEEEEEecccCCCCCCCCCcceeEEEeeeEEe
Confidence 6899999999999986446678889987642222 1 3445677888899998531 26689999999954
Q ss_pred cCh
Q psy13333 93 DDI 95 (114)
Q Consensus 93 N~i 95 (114)
|..
T Consensus 162 ~~~ 164 (206)
T smart00159 162 DSV 164 (206)
T ss_pred ccc
Confidence 543
No 16
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=95.29 E-value=0.088 Score=36.49 Aligned_cols=62 Identities=16% Similarity=0.121 Sum_probs=42.8
Q ss_pred CCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEc-cCC---ccCccceeeeceeEEc
Q psy13333 25 GQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIG-RNE---SMTEGFIGCVSRVEFD 93 (114)
Q Consensus 25 gqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lG-g~~---~~~~GF~GCls~v~~N 93 (114)
|+||+|-+..+....++.|-||........ .. .-....+|.+| +.. .....|.|+|.+|++=
T Consensus 61 ~~W~hva~v~d~~~g~~~lYvnG~~~~~~~-----~~--~~~~~~~~~iG~~~~~~~~~~~~f~G~Idevriy 126 (133)
T smart00560 61 GVWVHLAGVYDGGAGKLSLYVNGVEVATSE-----TQ--PSPSSGNLPQGGRILLGGAGGENFSGRLDEVRVY 126 (133)
T ss_pred CCEEEEEEEEECCCCeEEEEECCEEccccc-----cC--CcccCCceEEeeeccCCCCCCCCceEEeeEEEEe
Confidence 999999999986335899999985443322 11 12445678888 332 2367899999999763
No 17
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....
Probab=94.66 E-value=0.88 Score=34.02 Aligned_cols=71 Identities=17% Similarity=0.303 Sum_probs=44.6
Q ss_pred cCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCC-------ccCccceeeeceeEE-
Q psy13333 21 HFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNE-------SMTEGFIGCVSRVEF- 92 (114)
Q Consensus 21 ~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~-------~~~~GF~GCls~v~~- 92 (114)
++.|++||++=++-+.....+.+-||........ + .....+.....|+||-.+ .....|+|=|+.+.+
T Consensus 80 ~~~~~~Whh~C~tW~s~~G~~~ly~dG~~~~~~~--~--~~g~~i~~gG~~vlGQeQd~~gG~fd~~q~F~G~i~~~~iW 155 (195)
T PF00354_consen 80 PIRDGQWHHICVTWDSSTGRWQLYVDGVRLSSTG--L--ATGHSIPGGGTLVLGQEQDSYGGGFDESQAFVGEISDFNIW 155 (195)
T ss_dssp CS-TSS-EEEEEEEETTTTEEEEEETTEEEEEEE--S--STT--B-SSEEEEESS-BSBTTBTCSGGGB--EEEEEEEEE
T ss_pred ccCCCCcEEEEEEEecCCcEEEEEECCEeccccc--c--cCCceECCCCEEEECccccccCCCcCCccEeeEEEeceEEE
Confidence 6789999999999887556777889997322222 2 455567777889999643 136789999999965
Q ss_pred cCh
Q psy13333 93 DDI 95 (114)
Q Consensus 93 N~i 95 (114)
|.+
T Consensus 156 d~v 158 (195)
T PF00354_consen 156 DRV 158 (195)
T ss_dssp SS-
T ss_pred eee
Confidence 444
No 18
>KOG3509|consensus
Probab=85.64 E-value=0.41 Score=44.03 Aligned_cols=85 Identities=18% Similarity=0.237 Sum_probs=52.9
Q ss_pred EEEEEcCCeeEEEEecCccCCCCCceEEEEEEecCCCEEEEEECC-CCCeEEEeecCCCCcceeeceeeEEEccCC----
Q psy13333 3 RVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDS-YEPKEFHFNIKDSADAQFNNIQYMYIGRNE---- 77 (114)
Q Consensus 3 q~ry~Lg~~~~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~-~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~---- 77 (114)
-+||+.+.++-.+.. .....+++||.+.|.|-. .+-+++ ....+... .....++..-.++|+|++-
T Consensus 293 g~~~~~~~~~~~~~~-~~~~~~~E~~~~~i~r~s-----~~~~~g~~~~l~g~~---~~~~~~i~~ee~v~lg~i~ni~~ 363 (964)
T KOG3509|consen 293 GVRYDCGLPQREDRL-DVTSYIGEWRFGIIFRGS-----GLSVSGHKGVLQGNS---NILVSRITNEESVFLGGIINIET 363 (964)
T ss_pred cccccccCcchhhhh-ccccccceeeeeEeeecc-----cccccCcceeecccc---cccccceeecccccCCceeeecc
Confidence 356666665555443 236889999999999922 222333 11122221 1334456666788888852
Q ss_pred -----ccCccceeeeceeEEcChh
Q psy13333 78 -----SMTEGFIGCVSRVEFDDIY 96 (114)
Q Consensus 78 -----~~~~GF~GCls~v~~N~i~ 96 (114)
....||.||+.++++|...
T Consensus 364 l~~~~~~~eGf~gci~~~~~~~k~ 387 (964)
T KOG3509|consen 364 LQHNLPLPEGFAGCIRDLVMNLKD 387 (964)
T ss_pred ccccCCCccCccceehhhhhhccc
Confidence 2389999999999988753
No 19
>KOG1836|consensus
Probab=79.34 E-value=1.7 Score=42.45 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=53.6
Q ss_pred cCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccCC--------ccCccceeeeceeEE
Q psy13333 21 HFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRNE--------SMTEGFIGCVSRVEF 92 (114)
Q Consensus 21 ~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~~--------~~~~GF~GCls~v~~ 92 (114)
.+=+++||.+...+.. ..+-+++|.+..... ....-....++++|+.. ...++|.||| -|..
T Consensus 1613 ~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~-------~~~~~~~~~p~~~~~~~~s~~~~~~~~~~~~~~~~-~~~~ 1682 (1705)
T KOG1836|consen 1613 SLLPGGCHSVTSSTDP--GVVQLEDDTYTVGEI-------PPPPADTQEPIKLGGYPSSLTTLRIAVLKSFTGCI-FVVM 1682 (1705)
T ss_pred hhcCCcceeeeeecCC--ccccccccceecccC-------CCCchhccCCcccCCccccccceeeecccccccce-EEec
Confidence 5679999999999998 888888888544333 22334566789999964 2389999999 4444
Q ss_pred cChhhhhhhccCC
Q psy13333 93 DDIYPLKLLFQED 105 (114)
Q Consensus 93 N~i~plk~a~~~~ 105 (114)
+...++-.|..+.
T Consensus 1683 ~~~~~~~~a~~~~ 1695 (1705)
T KOG1836|consen 1683 GIRVDVTLAGEVM 1695 (1705)
T ss_pred CCCCcHHHHHhhh
Confidence 4446776666653
No 20
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=68.55 E-value=10 Score=26.71 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=26.3
Q ss_pred cCCCCCceEEEEEEecCCCEEEEEECCCCCeEEE
Q psy13333 21 HFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFH 54 (114)
Q Consensus 21 ~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~ 54 (114)
....++||+++|.=.. ..+.+.||........
T Consensus 123 ~~~~~~W~~~~I~~~g--~~i~v~vnG~~v~~~~ 154 (185)
T PF06439_consen 123 AIPPGEWNTVRIVVKG--NRITVWVNGKPVADFT 154 (185)
T ss_dssp S--TTSEEEEEEEEET--TEEEEEETTEEEEEEE
T ss_pred cCCCCceEEEEEEEEC--CEEEEEECCEEEEEEE
Confidence 5789999999999998 9999999997766654
No 21
>PF07622 DUF1583: Protein of unknown function (DUF1583); InterPro: IPR011475 Most of the Rhodopirellula baltica hypothetical proteins that have this domain also match PF07619 from PFAM.
Probab=66.84 E-value=11 Score=31.71 Aligned_cols=42 Identities=12% Similarity=0.299 Sum_probs=33.5
Q ss_pred ccCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCccee
Q psy13333 20 KHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQF 65 (114)
Q Consensus 20 ~~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~l 65 (114)
.++.+.+|-+|+++|.+ ..+.|-.++.+..+.. +.+.+..+|
T Consensus 85 ~~l~~~~wN~v~l~~~g--~~v~l~LN~~~i~~~~--~~~~~~~~f 126 (399)
T PF07622_consen 85 LPLKVNAWNRVRLQRRG--DKVQLHLNGQLIYERP--LEPGSSRQF 126 (399)
T ss_pred CCCCccccceEEEEEeC--CEEEEEeCCceeEecc--cCCCCCCcc
Confidence 48999999999999998 8999999998777766 334445444
No 22
>PF00139 Lectin_legB: Legume lectin domain; InterPro: IPR001220 Legume lectins are one of the largest lectin families with more than 70 lectins reported. Leguminous plant lectins resemble each other in their physicochemical properties although they differ in their carbohydrate specificities. They consist of two or four subunits with relative molecular mass of 30 kDa and each subunit has one carbohydrate-binding site. The interaction with sugars requires tightly bound calcium and manganese ions. The structural similarities of these lectins are reported by the primary structural analyses and X-ray crystallographic studies. X-ray studies have shown that the folding of the polypeptide chains in the region of the carbohydrate-binding sites is also similar, despite differences in the primary sequences. The carbohydrate-binding sites of these lectins consist of two conserved amino acids on beta pleated sheets. One of these loops contains transition metals, calcium and manganese, which keep the amino acid residues of the sugar-binding site at the required positions. Amino acid sequences of this loop play an important role in the carbohydrate-binding specificities of these lectins. These lectins bind either glucose/mannose or galactose. The exact function of legume lectins is not known but they may be involved in the attachment of nitrogen-fixing bacteria to legumes and in the protection against pathogens. Some legume lectins are proteolytically processed to produce two chains, beta (which corresponds to the N-terminal) and alpha (C-terminal) (IPR000985 from INTERPRO). The lectin concanavalin A (conA) from jack bean is exceptional in that the two chains are transposed and ligated (by formation of a new peptide bond). The N terminus of mature conA thus corresponds to that of the alpha chain and the C terminus to the beta chain.; GO: 0005488 binding; PDB: 1VLN_B 2GDF_C 2JE9_C 2JEC_C 1DGL_B 2P37_B 2CWM_A 2P34_D 2OW4_A 3IPV_B ....
Probab=62.54 E-value=9 Score=29.01 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=24.6
Q ss_pred ccCCCCCceEEEEEEecCCCEEEEEECCC
Q psy13333 20 KHFGLGQYHDIRIRRKNSGATLLMQVDSY 48 (114)
Q Consensus 20 ~~l~DgqwH~V~i~R~~~~k~~~lqVD~~ 48 (114)
.+|.||.||.|.|+-+...+.+.+-++..
T Consensus 162 ~~l~~g~~~~v~I~Yd~~~~~L~V~l~~~ 190 (236)
T PF00139_consen 162 FSLSDGKWHTVWIDYDASTKRLSVYLDDN 190 (236)
T ss_dssp HHHGTTSEEEEEEEEETTTTEEEEEEEET
T ss_pred ccccCCcEEEEEEEEcCCccEEEEEEecc
Confidence 47899999999999998667777777776
No 23
>cd01951 lectin_L-type legume lectins. The L-type (legume-type) lectins are a highly diverse family of carbohydrate binding proteins that generally display no enzymatic activity toward the sugars they bind. This family includes arcelin, concanavalinA, the lectin-like receptor kinases, the ERGIC-53/VIP36/EMP46 type1 transmembrane proteins, and an alpha-amylase inhibitor. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.
Probab=55.71 E-value=28 Score=25.85 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=20.9
Q ss_pred CCceEEEEEEecCCCEEEEEECCCC
Q psy13333 25 GQYHDIRIRRKNSGATLLMQVDSYE 49 (114)
Q Consensus 25 gqwH~V~i~R~~~~k~~~lqVD~~~ 49 (114)
|+||+|+|+-+...+.+.+.+|...
T Consensus 154 g~~~~v~I~Y~~~~~~L~v~l~~~~ 178 (223)
T cd01951 154 GNEHTVRITYDPTTNTLTVYLDNGS 178 (223)
T ss_pred CCEEEEEEEEeCCCCEEEEEECCCC
Confidence 9999999999953488888888754
No 24
>PF14607 GxDLY: N-terminus of Esterase_SGNH_hydro-type
Probab=50.82 E-value=54 Score=23.79 Aligned_cols=49 Identities=18% Similarity=0.278 Sum_probs=29.1
Q ss_pred CCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEcc
Q psy13333 24 LGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGR 75 (114)
Q Consensus 24 DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg 75 (114)
||+|+.+.+-|-..+.+....+++.....+.+.|-.+ =-|..++|-||=
T Consensus 92 ~G~W~~~~~g~p~~~~~~~~~~~~m~~~~rey~LyLP---LYn~v~sLeIGV 140 (147)
T PF14607_consen 92 DGKWRFAGVGRPKFGDTESYLFSNMDPEEREYLLYLP---LYNGVKSLEIGV 140 (147)
T ss_pred CCCEEEEEecccCCCcceEEEEecCCCcceEEEEecc---CccceEEEEEcc
Confidence 9999999988876555666666665443332211000 015667777773
No 25
>cd06899 lectin_legume_LecRK_Arcelin_ConA legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor. This alignment model includes the legume lectins (also known as agglutinins), the arcelin (also known as phytohemagglutinin-L) family of lectin-like defense proteins, the LecRK family of lectin-like receptor kinases, concanavalinA (ConA), and an alpha-amylase inhibitor. Arcelin is a major seed glycoprotein discovered in kidney beans (Phaseolus vulgaris) that has insecticidal properties and protects the seeds from predation by larvae of various bruchids. Arcelin is devoid of monosaccharide binding properties and lacks a key metal-binding loop that is present in other members of this family. Phytohaemagglutinin (PHA) is a lectin found in plants, especially beans, that affects cell metabolism by inducing mitosis and by altering the permeability of the cell membrane to various proteins. PHA agglutinates most mammalian red blood cell types by bindin
Probab=47.93 E-value=27 Score=26.53 Aligned_cols=28 Identities=14% Similarity=0.099 Sum_probs=22.3
Q ss_pred cCCCCCceEEEEEEecCCCEEEEEECCC
Q psy13333 21 HFGLGQYHDIRIRRKNSGATLLMQVDSY 48 (114)
Q Consensus 21 ~l~DgqwH~V~i~R~~~~k~~~lqVD~~ 48 (114)
+|.||++|.|+|.-+.+.+.+.+.++..
T Consensus 159 ~l~~g~~~~v~I~Y~~~~~~L~V~l~~~ 186 (236)
T cd06899 159 KLKSGKPMQAWIDYDSSSKRLSVTLAYS 186 (236)
T ss_pred cccCCCeEEEEEEEcCCCCEEEEEEEeC
Confidence 3689999999999996447777777754
No 26
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=44.41 E-value=42 Score=25.84 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=18.7
Q ss_pred eEEEEecCcc-CCCCCceEEEEEEec
Q psy13333 12 RQELIFPNKH-FGLGQYHDIRIRRKN 36 (114)
Q Consensus 12 ~~~l~~~~~~-l~DgqwH~V~i~R~~ 36 (114)
+++|.+...+ -.||.||.|+++=+.
T Consensus 257 ~Y~l~y~~~~~~~dg~~~~i~V~~~~ 282 (296)
T TIGR03436 257 QYLIGYYPPNPAHDGKFRKIKVRVKR 282 (296)
T ss_pred eEEEEEcCCCCCCCCceeEEEEEEeC
Confidence 4677766554 459999999998765
No 27
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=43.77 E-value=26 Score=19.44 Aligned_cols=26 Identities=15% Similarity=0.163 Sum_probs=17.1
Q ss_pred CCCCceEEEEEEecCCCEEEEEECCC
Q psy13333 23 GLGQYHDIRIRRKNSGATLLMQVDSY 48 (114)
Q Consensus 23 ~DgqwH~V~i~R~~~~k~~~lqVD~~ 48 (114)
.||+|++.+|.....+....+.-.++
T Consensus 10 ~d~~wyra~V~~~~~~~~~~V~f~Dy 35 (48)
T cd04508 10 DDGKWYRAKITSILSDGKVEVFFVDY 35 (48)
T ss_pred CCCeEEEEEEEEECCCCcEEEEEEcC
Confidence 48999999999986223444443343
No 28
>KOG1834|consensus
Probab=37.57 E-value=1.5e+02 Score=27.30 Aligned_cols=75 Identities=12% Similarity=0.136 Sum_probs=44.6
Q ss_pred EEEEecCccCCCCCceEEEEEEecCCCEEEEEECCC--CCeEEEeecCCCCcceeeceeeEEEccC-----C---ccCcc
Q psy13333 13 QELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSY--EPKEFHFNIKDSADAQFNNIQYMYIGRN-----E---SMTEG 82 (114)
Q Consensus 13 ~~l~~~~~~l~DgqwH~V~i~R~~~~k~~~lqVD~~--~~~~~~~~l~~~~~~~ln~~~~L~lGg~-----~---~~~~G 82 (114)
+++.-....+-|++||+-.++-+. -.++|-||.- .+-...-+ .+----..-..|.+|.. . ..+.=
T Consensus 430 aef~Wkl~qVCD~EWH~Y~ln~ef--p~VtlyvDG~Sfep~~i~dd---wplHpsk~~tqLvVGACW~g~~~~~l~~aqf 504 (952)
T KOG1834|consen 430 AEFHWKLPQVCDNEWHHYVLNVEF--PDVTLYVDGKSFEPPLITDD---WPLHPSKIETQLVVGACWQGRQQKPLKLAQF 504 (952)
T ss_pred hheeccchhhhhhhhheeEEeecC--ceEEEEEcCcccCCceeccC---CccCcccccceeEEeeeccCccccchhHHHH
Confidence 444333446789999999999998 8999999973 22221100 11101123446888874 1 22445
Q ss_pred ceeeeceeEE
Q psy13333 83 FIGCVSRVEF 92 (114)
Q Consensus 83 F~GCls~v~~ 92 (114)
|.|-|+++.+
T Consensus 505 FrG~Lasltl 514 (952)
T KOG1834|consen 505 FRGQLASLTL 514 (952)
T ss_pred hhcccceeEE
Confidence 7777776643
No 29
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=32.61 E-value=1.5e+02 Score=22.46 Aligned_cols=73 Identities=10% Similarity=0.125 Sum_probs=44.5
Q ss_pred cCCCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCc-ceeeceeeEEEccCC---ccCccceeeeceeE-EcCh
Q psy13333 21 HFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSAD-AQFNNIQYMYIGRNE---SMTEGFIGCVSRVE-FDDI 95 (114)
Q Consensus 21 ~l~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~-~~ln~~~~L~lGg~~---~~~~GF~GCls~v~-~N~i 95 (114)
..++-.||.|...-+..++...|-||+.-...... +...+ ..+.-.-++.||++. ...-||.|=|..|. ||.+
T Consensus 99 ~~~~~~~~tva~~ad~~~~~ykly~NG~~v~~~~~--~~~~Fis~i~~~n~~~iG~t~R~g~~~y~f~G~I~~l~iYn~a 176 (190)
T PF02973_consen 99 YKNNVTFNTVAFVADSKNKGYKLYVNGELVSTLSS--KSGNFISDIPGLNSVQIGGTNRAGSNAYPFNGTIDNLKIYNRA 176 (190)
T ss_dssp ETTEES-EEEEEEEETTTTEEEEEETTCEEEEEEE--CTSS-GGGSTT--EEEESSEEETTEEES--EEEEEEEEEESS-
T ss_pred ccCCceEEEEEEEEecCCCeEEEEeCCeeEEEecc--ccccHhhcCcCCceEEEcceEeCCCceecccceEEEEEEEcCc
Confidence 45777899999988722389999999955444431 10111 123445689999974 34788999999995 4654
No 30
>PF13501 SoxY: Sulfur oxidation protein SoxY; PDB: 2OXG_B 2OX5_B 2OXH_F 2NNF_A 2NNC_B.
Probab=32.10 E-value=87 Score=21.46 Aligned_cols=28 Identities=4% Similarity=-0.109 Sum_probs=15.0
Q ss_pred eEEEEEcCCeeEEEEecCccCCCCCceEEE
Q psy13333 2 LRVVFDFGFERQELIFPNKHFGLGQYHDIR 31 (114)
Q Consensus 2 Lq~ry~Lg~~~~~l~~~~~~l~DgqwH~V~ 31 (114)
+.+|.+++....+.-+ -..+||+||.-+
T Consensus 74 ~stRir~~~~s~V~av--a~t~dG~~~~a~ 101 (111)
T PF13501_consen 74 VSTRIRMAQTSPVRAV--AETSDGKLYMAS 101 (111)
T ss_dssp EEEEEE-SSSEEEEEE--EEETTTEEEEEE
T ss_pred eEEEEEecCcccEEEE--EEecCCeEEEee
Confidence 4556666654433222 135699999844
No 31
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=31.37 E-value=1.9e+02 Score=21.07 Aligned_cols=60 Identities=15% Similarity=0.040 Sum_probs=30.6
Q ss_pred EecCccCCCCCceEEEEEEecCC-CEEEEEE--CCCCCeEEEeecCCCCcceeeceeeEEEcc
Q psy13333 16 IFPNKHFGLGQYHDIRIRRKNSG-ATLLMQV--DSYEPKEFHFNIKDSADAQFNNIQYMYIGR 75 (114)
Q Consensus 16 ~~~~~~l~DgqwH~V~i~R~~~~-k~~~lqV--D~~~~~~~~~~l~~~~~~~ln~~~~L~lGg 75 (114)
.....++.-|+||++.+.=.-+. .+++++| |........-+.-......+..--.||=..
T Consensus 143 ~~~~~~~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~~~~~~~~~~y~K~GiYr~~ 205 (224)
T PF14099_consen 143 SVDLGPVERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGPTGYNDDRGPYFKFGIYRSG 205 (224)
T ss_dssp EEECCCS-TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEEECECCSSEEEEEEEEEEHC
T ss_pred eecCCCcCCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCCceeCCCCcceeEEEEECCC
Confidence 33445788899999998766531 2455554 765444443210001113444555566544
No 32
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=27.76 E-value=76 Score=20.08 Aligned_cols=28 Identities=11% Similarity=-0.003 Sum_probs=16.7
Q ss_pred CCCCceEEEEEEecCCCEEEEEE-CCCCC
Q psy13333 23 GLGQYHDIRIRRKNSGATLLMQV-DSYEP 50 (114)
Q Consensus 23 ~DgqwH~V~i~R~~~~k~~~lqV-D~~~~ 50 (114)
.||.|++.+|+-...+....++- |.-..
T Consensus 64 ~~~~w~Ra~I~~~~~~~~~~V~~iD~G~~ 92 (121)
T PF00567_consen 64 EDGRWYRAVITVDIDENQYKVFLIDYGNT 92 (121)
T ss_dssp TTSEEEEEEEEEEECTTEEEEEETTTTEE
T ss_pred cCCceeeEEEEEecccceeEEEEEecCce
Confidence 47899999993333225655554 54333
No 33
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=24.57 E-value=82 Score=22.43 Aligned_cols=22 Identities=36% Similarity=0.373 Sum_probs=15.9
Q ss_pred CceEEEEEEecCCCEEEEEECCCC
Q psy13333 26 QYHDIRIRRKNSGATLLMQVDSYE 49 (114)
Q Consensus 26 qwH~V~i~R~~~~k~~~lqVD~~~ 49 (114)
|=+.|+|+=.. ..+.+|||.++
T Consensus 140 Q~~~i~i~~~~--~~~~~QvDGEp 161 (161)
T PF00609_consen 140 QGRPIRIETKE--NKVPFQVDGEP 161 (161)
T ss_pred cCCEEEEEECC--CceeEEeCCCC
Confidence 34778877662 28999999875
No 34
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=24.36 E-value=2.6e+02 Score=19.98 Aligned_cols=49 Identities=14% Similarity=0.197 Sum_probs=35.3
Q ss_pred CCCCceEEEEEEecCCCEEEEEECCCCCeEEEeecCCCCcceeeceeeEEEccC
Q psy13333 23 GLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADAQFNNIQYMYIGRN 76 (114)
Q Consensus 23 ~DgqwH~V~i~R~~~~k~~~lqVD~~~~~~~~~~l~~~~~~~ln~~~~L~lGg~ 76 (114)
..+.||...++-.. ..+..-||......... + .+...+.+.-.+.+++.
T Consensus 140 ~~~~~H~Y~~~W~~--~~i~~yvDG~~~~~~~~--~-~p~~p~~i~ln~~~~~~ 188 (210)
T cd00413 140 PADDFHTYRVDWTP--GEITFYVDGVLVATITN--Q-VPDDPMNIILNLWSDGG 188 (210)
T ss_pred CccCeEEEEEEEeC--CEEEEEECCEEEEEECC--C-CCCCCcEEEEEEEECCC
Confidence 57899999999998 89999999877666542 1 23444555666666653
No 35
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=21.57 E-value=42 Score=21.63 Aligned_cols=12 Identities=42% Similarity=0.828 Sum_probs=8.4
Q ss_pred cCccCCCCCceE
Q psy13333 18 PNKHFGLGQYHD 29 (114)
Q Consensus 18 ~~~~l~DgqwH~ 29 (114)
....+.-||||.
T Consensus 35 ~~ekislgqwh~ 46 (79)
T PF09061_consen 35 KNEKISLGQWHT 46 (79)
T ss_dssp TTEEEE-TTHHH
T ss_pred cCceeehhhhhh
Confidence 445789999995
Done!