RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13333
(114 letters)
>gnl|CDD|216930 pfam02210, Laminin_G_2, Laminin G domain. This family includes the
Thrombospondin N-terminal-like domain, a Laminin G
subfamily.
Length = 124
Score = 55.9 bits (135), Expect = 2e-11
Identities = 24/100 (24%), Positives = 35/100 (35%), Gaps = 13/100 (13%)
Query: 1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
L + +D G L+ K GQ+H + + R TL VD S
Sbjct: 30 RLVLRYDLGSGGSVLLLSGKKLNDGQWHRVSVSRDGRSLTL--SVDGGTVVSEALPGSSS 87
Query: 61 ADAQFNNIQYMYIG--------RNESMTEGFIGCVSRVEF 92
N +Y+G +TEGF+GC+ V
Sbjct: 88 ---ILNLNGPLYLGGLPEDSGLSLLPVTEGFVGCIRNVRV 124
>gnl|CDD|214598 smart00282, LamG, Laminin G domain.
Length = 132
Score = 49.6 bits (119), Expect = 7e-09
Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 13/101 (12%)
Query: 1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
L + +D G L GQ+H + + R TL VD
Sbjct: 35 RLVLRYDLGSGPARLTSDPTPLNDGQWHRVAVERNGRSVTL--SVDGGNRVSGE---SPG 89
Query: 61 ADAQFNNIQYMYIG--------RNESMTEGFIGCVSRVEFD 93
N +Y+G +T GF GC+ ++ +
Sbjct: 90 GLTILNLDGPLYLGGLPEDLKLPPLPVTPGFRGCIRNLKVN 130
>gnl|CDD|238058 cd00110, LamG, Laminin G domain; Laminin G-like domains are usually
Ca++ mediated receptors that can have binding sites for
steroids, beta1 integrins, heparin, sulfatides,
fibulin-1, and alpha-dystroglycans. Proteins that
contain LamG domains serve a variety of purposes
including signal transduction via cell-surface steroid
receptors, adhesion, migration and differentiation
through mediation of cell adhesion molecules.
Length = 151
Score = 46.3 bits (110), Expect = 2e-07
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 14/101 (13%)
Query: 1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
L + +D G L GQ+H + + R TL VD E
Sbjct: 57 RLVLRYDLGSGSLVLSSKT-PLNDGQWHSVSVERNGRSVTL--SVDGERVVES---GSPG 110
Query: 61 ADAQFNNIQYMYIG--------RNESMTEGFIGCVSRVEFD 93
A N +Y+G ++ GF+GC+ ++ +
Sbjct: 111 GSALLNLDGPLYLGGLPEDLKSPGLPVSPGFVGCIRDLKVN 151
>gnl|CDD|225215 COG2336, MazE, Growth regulator [Signal transduction mechanisms].
Length = 82
Score = 28.1 bits (63), Expect = 0.38
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 30 IRIRRKNSGATLLMQVDSYEPKEFHFNIKDSADA 63
IR R+ S A LL ++ P+ FH I D A
Sbjct: 44 IRPVRRRSLAELLALLEETTPENFHEEIDDGAPV 77
>gnl|CDD|224225 COG1306, COG1306, Uncharacterized conserved protein [Function
unknown].
Length = 400
Score = 28.0 bits (62), Expect = 0.99
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 45 VDSYEPKEFHFNI---KDSADAQFNNIQYMYI 73
VD+Y+ + +N+ K++A F+ IQ+ YI
Sbjct: 187 VDAYDKNLWEYNVTIAKEAAKFGFDEIQFDYI 218
>gnl|CDD|237676 PRK14329, PRK14329, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 467
Score = 27.7 bits (62), Expect = 1.6
Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 16 IFPNKHFGLGQYHDIRIRRKNSGATLL 42
+FP +++ +G + ++RI + ATLL
Sbjct: 436 VFPKENYKIGDFVNVRI-TDCTSATLL 461
>gnl|CDD|200389 TIGR04138, Plancto_Ver_chp, Verruc_Plancto-restricted protein.
Members of this protein family are extremely
lineage-restricted, occurring exclusively in the
Planctomycetes and Chlamydiae/Verrucomicrobia group,
although not in Chlamydia itself. The function is
unknown; the lack of invariant residues other than a
single Phe suggests an ancient, conserved, non-enzymatic
role.
Length = 122
Score = 26.8 bits (60), Expect = 2.0
Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 19/105 (18%)
Query: 10 FERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEF---------HFNIKDS 60
F R+ L F K G + + R SG LL + Y K+F + ++ +
Sbjct: 19 FVREALDFTQKRLGKQRSQE---REHVSGQELLEGLRDYALKQFGPMALTVLNEWGVRKT 75
Query: 61 ADAQFNNIQYMYIGRNE-SMTEGFIGCVSRVEFDDIYPLKLLFQE 104
D F I + I S TE SR +FDD+Y + F E
Sbjct: 76 ED--FGEIVFNLIEYGLLSKTERD----SREDFDDVYDFEEAFDE 114
>gnl|CDD|233252 TIGR01056, topB, DNA topoisomerase III, bacteria and conjugative
plasmid. This model describes topoisomerase III from
bacteria and its equivalents encoded on plasmids. The
gene is designated topB if found in the bacterial
chromosome, traE on conjugative plasmid RP4, etc. These
enzymes are involved in the control of DNA topology.
DNA topoisomerase III belongs to the type I
topoisomerases, which are ATP-independent [DNA
metabolism, DNA replication, recombination, and
repair].
Length = 660
Score = 26.7 bits (59), Expect = 3.3
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 49 EPKEFHFNIKDSADAQFNNIQ 69
EP+++ + D QFN I+
Sbjct: 68 EPEDWQLVVSDKTKKQFNVIK 88
>gnl|CDD|110176 pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-coenzyme A
synthase N terminal.
Length = 171
Score = 25.6 bits (56), Expect = 5.9
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 66 NNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVRSI 113
NN+ Y IGR E TE I V+ L LF+E G ++ I
Sbjct: 65 NNLDYDCIGRLEVGTETIIDKSKSVKTV----LMQLFEESGNTDIEGI 108
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.144 0.432
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,884,777
Number of extensions: 499894
Number of successful extensions: 389
Number of sequences better than 10.0: 1
Number of HSP's gapped: 386
Number of HSP's successfully gapped: 17
Length of query: 114
Length of database: 10,937,602
Length adjustment: 78
Effective length of query: 36
Effective length of database: 7,477,990
Effective search space: 269207640
Effective search space used: 269207640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.2 bits)