RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13333
(114 letters)
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 78.9 bits (194), Expect = 8e-19
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Query: 1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
+ V F+ G + + N G+YH +R R ATL QVDS+ E +
Sbjct: 287 KIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATL--QVDSWPVIERY--PAGR 342
Query: 61 ADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVRSIG 114
FN+ + IG E + F G +S + ++ + L + + D AN+ +G
Sbjct: 343 QLTIFNSQATIIIGGKEQ-GQPFQGQLSGLYYNGLKVLNMAAEND--ANIAIVG 393
Score = 40.8 bits (95), Expect = 3e-05
Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 8/101 (7%)
Query: 1 HLRVVFDFGFERQEL-IFPNKHFGLGQYHDIRIRRKNSGATLLMQVDS---YEPKEFHFN 56
+L VFD G + NK Q+H++ I R S + ++D+ + N
Sbjct: 62 YLHYVFDLGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTV-KIDTKITTQITAGARN 120
Query: 57 IKDSADAQF---NNIQYMYIGRNESMTEGFIGCVSRVEFDD 94
+ +D Y + + EGF GC++ V+ +
Sbjct: 121 LDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNG 161
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 77.6 bits (190), Expect = 3e-18
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 5/111 (4%)
Query: 1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
+ V F+ G + + N G+YH +R R ATL QVDS+ E
Sbjct: 1119 KIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATL--QVDSWPVIE--RYPAGR 1174
Query: 61 ADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVR 111
FN+ + IG E + F G +S + ++ + L + + D +
Sbjct: 1175 QLTIFNSQATIIIGGKEQ-GQPFQGQLSGLYYNGLKVLNMAAENDANIAIV 1224
Score = 46.4 bits (109), Expect = 3e-07
Identities = 17/128 (13%), Positives = 42/128 (32%), Gaps = 22/128 (17%)
Query: 1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
HL ++ D G ++ K G+++ + +R T+ V++
Sbjct: 491 HLYLLLDMGSGTIKIKALQKKVNDGEWYHVDFQRDGRSGTI--SVNTLRTPYTA----PG 544
Query: 61 ADAQFNNIQYMYIG---------------RNESMTEGFIGCVSRVEFDD-IYPLKLLFQE 104
+ +Y+G + G++GC+ + D ++ + +
Sbjct: 545 ESEILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEV 604
Query: 105 DGPANVRS 112
A V+
Sbjct: 605 QSTAGVKP 612
Score = 46.4 bits (109), Expect = 3e-07
Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 20/119 (16%)
Query: 1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
L++ F + + G +H++RIRR+ TL +D E K S
Sbjct: 58 RLQLSFSIFCAEPATLLTDTPVNDGAWHNVRIRRQFRNTTL--FIDQVEAKWVE---VKS 112
Query: 61 ADAQFNNIQYMYIG---------------RNESMTEGFIGCVSRVEFDDIYPLKLLFQE 104
+++G + E F G + V L + E
Sbjct: 113 KRRDMTVFSGLFVGGLPPELRAAALKLTLASVREREPFKGWIRDVRVQSSLALPVDSGE 171
Score = 39.1 bits (90), Expect = 1e-04
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 8/104 (7%)
Query: 1 HLRVVFDFGFERQEL-IFPNKHFGLGQYHDIRIRRKNSGATLLMQVD---SYEPKEFHFN 56
+L VFD G + NK Q+H++ I R S + ++D + + N
Sbjct: 894 YLHYVFDLGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTV-KIDTKITTQITAGARN 952
Query: 57 IKDSADAQFNNI---QYMYIGRNESMTEGFIGCVSRVEFDDIYP 97
+ +D + Y + + EGF GC++ V+ + P
Sbjct: 953 LDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLP 996
Score = 37.9 bits (87), Expect = 3e-04
Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 15/107 (14%)
Query: 1 HLRVVFDFGFERQELI--FPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIK 58
+ +V + G E + N F +HD+++ R T+ VD +
Sbjct: 289 AVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTI--SVDGILTTTGYTQ-- 344
Query: 59 DSADAQFNNIQYMYIG--------RNESMTEGFIGCVSRVEFDDIYP 97
+ + Y+G ++ F+GC+ V + +
Sbjct: 345 -EDYTMLGSDDFFYVGGSPSTADLPGSPVSNNFMGCLKEVVYKNNDV 390
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E*
3mw3_A*
Length = 220
Score = 62.1 bits (150), Expect = 4e-13
Identities = 30/142 (21%), Positives = 50/142 (35%), Gaps = 33/142 (23%)
Query: 1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFH------ 54
+ V F+ G + + N G+YH +R R ATL QVDS+ E +
Sbjct: 73 KIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATL--QVDSWPVIERYPAGNND 130
Query: 55 ----------------------FNIKDSADAQFNNIQYMYIGRNESMTEGFIGCVSRVEF 92
K FN+ + IG E + F G +S + +
Sbjct: 131 NERLAIARQRIPYRLGRVVDEWLLDKGRQLTIFNSQATIIIGGKE-QGQPFQGQLSGLYY 189
Query: 93 DDIYPLKLLFQEDGPANVRSIG 114
+ + L + + D N+ +G
Sbjct: 190 NGLKVLNMAAENDA--NIAIVG 209
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB:
3biw_E*
Length = 226
Score = 60.1 bits (145), Expect = 2e-12
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 5/111 (4%)
Query: 1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
+ V F+ G + + N G+YH +R R ATL QVDS+ E + +
Sbjct: 101 KIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATL--QVDSWPVIERYPAGRQL 158
Query: 61 ADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVR 111
FN+ + IG + + F G +S + ++ + L + + D +
Sbjct: 159 --TIFNSQATIIIG-GKEQGQPFQGQLSGLYYNGLKVLNMAAENDANIAIV 206
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium,
cell adhesion, EGF-like domain, glycoprotein, membrane,
metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C*
2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Length = 178
Score = 56.8 bits (137), Expect = 2e-11
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Query: 1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
+ V F+ G + + N G+YH +R R ATL QVDS+ E + +
Sbjct: 67 KIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATL--QVDSWPVIERYPAGRQL 124
Query: 61 ADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVRSIG 114
FN+ + IG + + F G +S + ++ + L + + D N+ +G
Sbjct: 125 --TIFNSQATIIIG-GKEQGQPFQGQLSGLYYNGLKVLNMAAENDA--NIAIVG 173
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A
{Bos taurus}
Length = 182
Score = 45.2 bits (107), Expect = 3e-07
Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 13/107 (12%)
Query: 1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
+++ + G + E +F + ++H +R+ R+ L VD + + +
Sbjct: 64 RVKLTVNLG-KGPETLFAGYNLNDNEWHTVRVVRRGKSLKL--TVDDQQAMTG----QMA 116
Query: 61 ADAQFNNIQYMYIG------RNESMTEGFIGCVSRVEFDDIYPLKLL 101
D + G S+ FIG + + F+ + + L
Sbjct: 117 GDHTRLEFHNIETGIITERRYLSSVPSNFIGHLQSLTFNGMAYIDLC 163
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil,
glycoprotein, laminin EGF-like domain, extracellular
matrix, laminin G-like domain; HET: NAG; 2.80A {Mus
musculus}
Length = 608
Score = 45.1 bits (106), Expect = 9e-07
Identities = 16/105 (15%), Positives = 34/105 (32%), Gaps = 18/105 (17%)
Query: 1 HLRVVFDFG---FERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNI 57
L V G + + F G+ H + + R T+ Q+D +
Sbjct: 443 RLEVHLSSGTRTMRKIVIKPEPNRFHDGREHSVHVERTRGIFTV--QIDEDRRH-----M 495
Query: 58 KDSADAQFNNIQYMYIG--------RNESMTEGFIGCVSRVEFDD 94
++ + Q ++ +++G F GCV + +
Sbjct: 496 QNLTEEQPIEVKKLFVGGAPPEFQPSPLRNIPAFQGCVWNLVINS 540
Score = 40.8 bits (95), Expect = 2e-05
Identities = 13/108 (12%), Positives = 32/108 (29%), Gaps = 14/108 (12%)
Query: 1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
+ ++D G + +P+ ++ I R ++ ++ + S
Sbjct: 68 KVSFLWDVGSGVGRVEYPDLTIDDSYWYRIEASRTGRNGSISVRALDGPKASMVPSTYHS 127
Query: 61 ADAQFNNIQY------MYIG--------RNESMTEGFIGCVSRVEFDD 94
I +++G + F GC+ FD+
Sbjct: 128 VSPPGYTILDVDANAMLFVGGLTGKIKKADAVRVITFTGCMGETYFDN 175
Score = 38.1 bits (88), Expect = 2e-04
Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 15/106 (14%)
Query: 1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
H++V +D G ++ N++ G++ + R A + + + + S
Sbjct: 262 HVKVSYDLGSGMTSVV-SNQNHNDGKWKAFTLSRIQKQANI--SIVDIDSNQEENVATSS 318
Query: 61 A----DAQFNNIQYMYIG--------RNESMTEGFIGCVSRVEFDD 94
+ +Y G R E + + GC+ +E
Sbjct: 319 SGNNFGLDLKADDKIYFGGLPTLRNLRPEVNVKKYSGCLKDIEISR 364
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4
PDB: 1pz8_A 1pz9_A 1q56_A
Length = 204
Score = 43.7 bits (103), Expect = 2e-06
Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 16/104 (15%)
Query: 1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
+++++D G + ++ + I+ R +L QV + P
Sbjct: 86 FVQMMYDLG-SKPVVLRSTVPINTNHWTHIKAYRVQREGSL--QVGNEAPITGSSP---L 139
Query: 61 ADAQFNNIQYMYIG----------RNESMTEGFIGCVSRVEFDD 94
Q + +++G ++ + GFIGC+ V D
Sbjct: 140 GATQLDTDGALWLGGMERLSVAHKLPKAYSTGFIGCIRDVIVDR 183
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller,
laminin-G, signaling, protein binding; HET: NAG; 2.85A
{Rattus norvegicus} PDB: 3v65_A
Length = 191
Score = 43.3 bits (102), Expect = 2e-06
Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 16/104 (15%)
Query: 1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
HL++ +D G + ++ ++ IR R++ +L QV + P
Sbjct: 73 HLQLSYDLG-SQPVVLRSTVKVNTNRWLRIRAHREHREGSL--QVGNEAPVTGSSP---L 126
Query: 61 ADAQFNNIQYMYIG----------RNESMTEGFIGCVSRVEFDD 94
Q + +++G ++ GF+GC+ V
Sbjct: 127 GATQLDTDGALWLGGLQKLPVGQALPKAYGTGFVGCLRDVVVGH 170
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding
protein; 1.9A {Mus musculus}
Length = 383
Score = 43.0 bits (101), Expect = 3e-06
Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 15/103 (14%)
Query: 1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
L +FD G R ++ P G++H ++ A + VD E
Sbjct: 80 RLHFMFDLGKGRTKVSHPAL-LSDGKWHTVKTEYIKRKAFM--TVDGQESPSVTVV---G 133
Query: 61 ADAQFNNIQYMYIG---------RNESMTEGFIGCVSRVEFDD 94
+ + +Y+G ++T C+ + +
Sbjct: 134 KATTLDVERKLYLGGLPSHYRARNIGTITHSIPACIGEIMVNG 176
Score = 42.7 bits (100), Expect = 6e-06
Identities = 14/112 (12%), Positives = 30/112 (26%), Gaps = 16/112 (14%)
Query: 1 HLRVVFDFG---FERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNI 57
+ + G + G++H ++ + L VD
Sbjct: 256 KVLFHVNNGAGRITATYQPRAARALCDGKWHTLQAHKSKHRIVL--TVDGNSV---RAES 310
Query: 58 KDSADAQFNNIQYMYIG--------RNESMTEGFIGCVSRVEFDDIYPLKLL 101
+ + +Y+G + S F GCV + ++ L
Sbjct: 311 PHTHSTSADTNDPIYVGGYPAHIKQNSLSSRASFRGCVRNLRLSRGSQVQSL 362
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus}
SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Length = 394
Score = 43.1 bits (101), Expect = 4e-06
Identities = 20/124 (16%), Positives = 38/124 (30%), Gaps = 16/124 (12%)
Query: 1 HLRVVFDFGFERQELIF---PNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNI 57
L D G R I+ H GQ+H + ++ + L VD +
Sbjct: 268 KLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTAKKIKNRLEL--VVDGNQV---DAQS 322
Query: 58 KDSADAQFNNIQYMYIG--------RNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPAN 109
+SA + +++G + F GC+ ++ L
Sbjct: 323 PNSASTSADTNDPVFVGGFPGGLNQFGLTTNIRFRGCIRSLKLTKGTGKPLEVNFAKALE 382
Query: 110 VRSI 113
+R +
Sbjct: 383 LRGV 386
Score = 42.3 bits (99), Expect = 8e-06
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 16/103 (15%)
Query: 1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
+D G + P K GQ+H I+I R ++ VD
Sbjct: 94 FPYFSYDLGSGDTSTMIPTK-INDGQWHKIKIVR--VKQEGILYVDDASS---QTISPKK 147
Query: 61 ADAQFNNIQYMYIG---------RNESMTEGFIGCVSRVEFDD 94
AD + + +Y+G R +T GCV + +
Sbjct: 148 AD-ILDVVGILYVGGLPINYTTRRIGPVTYSLDGCVRNLHMEQ 189
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein,
vitamin K-dependent protein, AXL/SKY/MER ligand, laminin
G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4
b.29.1.4 PDB: 2c5d_A*
Length = 422
Score = 42.9 bits (100), Expect = 5e-06
Identities = 8/108 (7%), Positives = 27/108 (25%), Gaps = 11/108 (10%)
Query: 1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
L + + + G + I + L+++V+ +
Sbjct: 98 RLELQLRYN-GVGRVTSSGPVINHGMWQTISVEEL--ARNLVIKVNRDAVMKIAVAGDLF 154
Query: 61 ADAQFNNIQYMYIG--------RNESMTEGFIGCVSRVEFDDIYPLKL 100
+ + +G + + GC+ + + +
Sbjct: 155 QPERGLYHLNLTVGGIPFHEKDLVQPINPRLDGCMRSWNWLNGEDTTI 202
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2,
protein structure initiative; 1.40A {Mus musculus}
Length = 189
Score = 41.4 bits (97), Expect = 1e-05
Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 17/104 (16%)
Query: 1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
HL +D G + +I + LG + + + R L QV +
Sbjct: 73 HLEFRYDLG-KGAAIIRSKEPIALGTWVRVFLERNGRKGAL--QVGDGPRVLG----ESP 125
Query: 61 ADAQFNNIQY-MYIG---------RNESMTEGFIGCVSRVEFDD 94
N++ +Y+G R ++ GF G + V
Sbjct: 126 VPHTMLNLKEPLYVGGAPDFSKLARGAAVASGFDGAIQLVSLRG 169
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal
binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A
Length = 195
Score = 40.3 bits (94), Expect = 3e-05
Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 14/105 (13%)
Query: 1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
HL + G + + G++H + R+ ++ QVD E
Sbjct: 72 HLVFRYQLG-SGEARLVSEDPINDGEWHRVTALREGRRGSI--QVDGEELVSG---RSPG 125
Query: 61 ADAQFNNIQYMYIG--------RNESMTEGFIGCVSRVEFDDIYP 97
+ N +YIG + G GCV + P
Sbjct: 126 PNVAVNAKGSVYIGGAPDVATLTGGRFSSGITGCVKNLVLHSARP 170
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}
Length = 184
Score = 40.2 bits (94), Expect = 3e-05
Identities = 15/105 (14%), Positives = 35/105 (33%), Gaps = 15/105 (14%)
Query: 1 HLRVVFDFGFERQELIFPNKHFGL--GQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIK 58
+ +V + G E + + +HD+++ R T+ VD +
Sbjct: 63 AVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTI--SVDGILTTTGY---T 117
Query: 59 DSADAQFNNIQYMYIG--------RNESMTEGFIGCVSRVEFDDI 95
+ + Y+G ++ F+GC+ V + +
Sbjct: 118 QEDYTMLGSDDFFYVGGSPSTADLPGSPVSNNFMGCLKEVVYKNN 162
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein;
HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB:
1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*
Length = 205
Score = 36.8 bits (85), Expect = 5e-04
Identities = 12/102 (11%), Positives = 33/102 (32%), Gaps = 12/102 (11%)
Query: 1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
+ + + + + G++H + ++ + L +VD E +
Sbjct: 75 RPEIQLHNHWAQLTVGAGPR-LDDGRWHQVEVKMEGDSVLL--EVDGEEVLRLR-QVSGP 130
Query: 61 ADAQFNNIQYMYIG--------RNESMTEGFIGCVSRVEFDD 94
++ + I + +G + GC+ R + D
Sbjct: 131 LTSKRHPIMRIALGGLLFPASNLRLPLVPALDGCLRRDSWLD 172
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin
G-like domain, jellyroll, androgen binding protein
(ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4
PDB: 1kdk_A* 1kdm_A*
Length = 170
Score = 33.7 bits (77), Expect = 0.004
Identities = 13/102 (12%), Positives = 28/102 (27%), Gaps = 18/102 (17%)
Query: 1 HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
+ Q + G++H + ++ + L +VD E
Sbjct: 63 RPEIQLHNH-WAQLTVGAGPRLDDGRWHQVEVKMEGDSVLL--EVDGEEVLRLR------ 113
Query: 61 ADAQFNNIQYMYIG--------RNESMTEGFIGCVSRVEFDD 94
+ I + +G + GC+ R + D
Sbjct: 114 -QVSGHPIMRIALGGLLFPASNLRLPLVPALDGCLRRDSWLD 154
>1kop_A Carbonic anhydrase; lyase, structural trimming; 1.90A {Neisseria
gonorrhoeae} SCOP: b.74.1.1 PDB: 1koq_A
Length = 223
Score = 24.6 bits (54), Expect = 8.0
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 28 HDIRIRRKNSGATLLMQVDSYEPKEFHF 55
H I++ G TL + +Y K+FHF
Sbjct: 63 HTIQVNYPEGGNTLTVNGRTYTLKQFHF 90
>2c43_A Aminoadipate-semialdehyde dehydrogenase- phosphopantetheinyl
transferase; fatty acid biosynthesis, coenzyme A; HET:
COA; 1.93A {Homo sapiens} PDB: 2byd_A* 2cg5_A*
Length = 323
Score = 24.7 bits (53), Expect = 8.5
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 27 YHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDSAD 62
++ IR++R G +L + S F+FNI D
Sbjct: 89 WNHIRLQRTAKGKPVLAKDSSNPYPNFNFNISHQGD 124
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.144 0.432
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,751,620
Number of extensions: 91007
Number of successful extensions: 224
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 30
Length of query: 114
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 37
Effective length of database: 4,551,876
Effective search space: 168419412
Effective search space used: 168419412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.7 bits)