RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13333
         (114 letters)



>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 177

 Score = 49.8 bits (118), Expect = 3e-09
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 7/114 (6%)

Query: 1   HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
            + V F+ G +   +   N     G+YH +R  R    ATL  QVDS+   E +   +  
Sbjct: 66  KIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATL--QVDSWPVIERYPAGRQ- 122

Query: 61  ADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVRSIG 114
               FN+   + IG  E   + F G +S + ++ +  L +  + D  AN+  +G
Sbjct: 123 -LTIFNSQATIIIGGKEQ-GQPFQGQLSGLYYNGLKVLNMAAEND--ANIAIVG 172


>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 185

 Score = 34.0 bits (77), Expect = 0.001
 Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 16/124 (12%)

Query: 1   HLRVVFDFGFERQELIF---PNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNI 57
            L    D G  R   I+      H   GQ+H +  ++  +   L++  +           
Sbjct: 60  KLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTAKKIKNRLELVVDGNQV-----DAQS 114

Query: 58  KDSADAQFNNIQYMYIG--------RNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPAN 109
            +SA    +    +++G           +    F GC+  ++        L         
Sbjct: 115 PNSASTSADTNDPVFVGGFPGGLNQFGLTTNIRFRGCIRSLKLTKGTGKPLEVNFAKALE 174

Query: 110 VRSI 113
           +R +
Sbjct: 175 LRGV 178


>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 191

 Score = 32.9 bits (74), Expect = 0.004
 Identities = 8/95 (8%), Positives = 24/95 (25%), Gaps = 11/95 (11%)

Query: 1   HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
            L +   +      +         G +  I +        L+++V+     +        
Sbjct: 94  RLELQLRY-NGVGRVTSSGPVINHGMWQTISVEE--LARNLVIKVNRDAVMKIAVAGDLF 150

Query: 61  ADAQFNNIQYMYIG--------RNESMTEGFIGCV 87
              +      + +G          + +     GC+
Sbjct: 151 QPERGLYHLNLTVGGIPFHEKDLVQPINPRLDGCM 185


>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]}
          Length = 195

 Score = 32.2 bits (72), Expect = 0.006
 Identities = 15/104 (14%), Positives = 36/104 (34%), Gaps = 16/104 (15%)

Query: 1   HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
            +++++D G +    +          +  I+           +QV +  P      +  +
Sbjct: 80  FVQMMYDLGSKPVV-LRSTVPINTNHWTHIKAY--RVQREGSLQVGNEAPITGSSPLGAT 136

Query: 61  ADAQFNNIQYMYIG----------RNESMTEGFIGCVSRVEFDD 94
              Q +    +++G            ++ + GFIGC+  V  D 
Sbjct: 137 ---QLDTDGALWLGGMERLSVAHKLPKAYSTGFIGCIRDVIVDR 177


>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 189

 Score = 30.6 bits (68), Expect = 0.023
 Identities = 20/99 (20%), Positives = 28/99 (28%), Gaps = 8/99 (8%)

Query: 1   HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFHFNIKDS 60
                +D G      + P K    GQ+H I+I R      L   VD    +       D 
Sbjct: 75  FPYFSYDLGSGDTSTMIPTK-INDGQWHKIKIVRVKQEGIL--YVDDASSQTISPKKADI 131

Query: 61  ADAQFNNI-----QYMYIGRNESMTEGFIGCVSRVEFDD 94
            D                 R   +T    GCV  +  + 
Sbjct: 132 LDVVGILYVGGLPINYTTRRIGPVTYSLDGCVRNLHMEQ 170


>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 170

 Score = 30.1 bits (67), Expect = 0.037
 Identities = 13/113 (11%), Positives = 32/113 (28%), Gaps = 7/113 (6%)

Query: 1   HLRVVFDFGFERQELIFPNKHFGLGQYHDIRIRRKNSGATLLMQVDSYEPKEFH-FNIKD 59
              +     + +   +        G++H + ++ +     L  +VD  E       +   
Sbjct: 63  RPEIQLHNHWAQLT-VGAGPRLDDGRWHQVEVKMEGDSVLL--EVDGEEVLRLRQVSGHP 119

Query: 60  SADAQFNNIQYMYIGRNESMTEGFIGCVSRVEFDDIYPLKLLFQEDGPANVRS 112
                   + +        +     GC+ R  + D            P ++RS
Sbjct: 120 IMRIALGGLLFPASNLRLPLVPALDGCLRRDSWLDKQ---AEISASAPTSLRS 169


>d1tdha2 b.113.1.1 (A:2-131) Endonuclease VIII-like 1 (NEIL1) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 130

 Score = 23.5 bits (50), Expect = 6.9
 Identities = 6/17 (35%), Positives = 6/17 (35%)

Query: 1   HLRVVFDFGFERQELIF 17
           HLR        R  L F
Sbjct: 97  HLRFYTAPPGPRLALCF 113


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.144    0.432 

Gapped
Lambda     K      H
   0.267   0.0667    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 435,417
Number of extensions: 18079
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 10
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.0 bits)