BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13339
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FI9|A Chain A, Structure Of Human Sun-Kash Complex
Length = 195
Score = 171 bits (433), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 84/169 (49%), Positives = 111/169 (65%), Gaps = 3/169 (1%)
Query: 76 HILRRDCGSVIDIRCTETYTLKDPYYVLFGYALWRRDSSPRKAIQPGLLPGDCWAFQGAI 135
+ L SVI RC+ETY K LFG LW SPR +QP + PG+CWAFQG
Sbjct: 27 YALESGGASVISTRCSETYETKTALLSLFGIPLWYHSQSPRVILQPDVHPGNCWAFQGPQ 86
Query: 136 GCLVLKLSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYD 195
G V++LS RI+ T ++EH+PKAL+PN I SAPK FA++G E + TLLG+F YD
Sbjct: 87 GFAVVRLSARIRPTAVTLEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLLGKFTYD 146
Query: 196 SEGPTLQ--YFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLA 242
+G +Q +F+A +A T+ +VEL+IL+N G+ EYTC+YRFRVHG A
Sbjct: 147 QDGEPIQTFHFQAPTMA-TYQVVELRILTNWGHPEYTCIYRFRVHGEPA 194
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 35/50 (70%)
Query: 302 NGMAFQGAIGCLVLKLSHRIQVTRFSMEHIPKTLTPNGIIDSAPKKFAVW 351
N AFQG G V++LS RI+ T ++EH+PK L+PN I SAPK FA++
Sbjct: 78 NCWAFQGPQGFAVVRLSARIRPTAVTLEHVPKALSPNSTISSAPKDFAIF 127
>pdb|4DXT|A Chain A, Human Sun2 (Aa 522-717)
Length = 198
Score = 171 bits (433), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 84/169 (49%), Positives = 111/169 (65%), Gaps = 3/169 (1%)
Query: 76 HILRRDCGSVIDIRCTETYTLKDPYYVLFGYALWRRDSSPRKAIQPGLLPGDCWAFQGAI 135
+ L SVI RC+ETY K LFG LW SPR +QP + PG+CWAFQG
Sbjct: 30 YALESGGASVISTRCSETYETKTALLSLFGIPLWYHSQSPRVILQPDVHPGNCWAFQGPQ 89
Query: 136 GCLVLKLSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYD 195
G V++LS RI+ T ++EH+PKAL+PN I SAPK FA++G E + TLLG+F YD
Sbjct: 90 GFAVVRLSARIRPTAVTLEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLLGKFTYD 149
Query: 196 SEGPTLQ--YFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLA 242
+G +Q +F+A +A T+ +VEL+IL+N G+ EYTC+YRFRVHG A
Sbjct: 150 QDGEPIQTFHFQAPTMA-TYQVVELRILTNWGHPEYTCIYRFRVHGEPA 197
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 35/50 (70%)
Query: 302 NGMAFQGAIGCLVLKLSHRIQVTRFSMEHIPKTLTPNGIIDSAPKKFAVW 351
N AFQG G V++LS RI+ T ++EH+PK L+PN I SAPK FA++
Sbjct: 81 NCWAFQGPQGFAVVRLSARIRPTAVTLEHVPKALSPNSTISSAPKDFAIF 130
>pdb|3UNP|A Chain A, Structure Of Human Sun2 Sun Domain
Length = 203
Score = 171 bits (433), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 84/169 (49%), Positives = 111/169 (65%), Gaps = 3/169 (1%)
Query: 76 HILRRDCGSVIDIRCTETYTLKDPYYVLFGYALWRRDSSPRKAIQPGLLPGDCWAFQGAI 135
+ L SVI RC+ETY K LFG LW SPR +QP + PG+CWAFQG
Sbjct: 30 YALESGGASVISTRCSETYETKTALLSLFGIPLWYHSQSPRVILQPDVHPGNCWAFQGPQ 89
Query: 136 GCLVLKLSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYD 195
G V++LS RI+ T ++EH+PKAL+PN I SAPK FA++G E + TLLG+F YD
Sbjct: 90 GFAVVRLSARIRPTAVTLEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLLGKFTYD 149
Query: 196 SEGPTLQ--YFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLA 242
+G +Q +F+A +A T+ +VEL+IL+N G+ EYTC+YRFRVHG A
Sbjct: 150 QDGEPIQTFHFQAPTMA-TYQVVELRILTNWGHPEYTCIYRFRVHGEPA 197
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 35/50 (70%)
Query: 302 NGMAFQGAIGCLVLKLSHRIQVTRFSMEHIPKTLTPNGIIDSAPKKFAVW 351
N AFQG G V++LS RI+ T ++EH+PK L+PN I SAPK FA++
Sbjct: 81 NCWAFQGPQGFAVVRLSARIRPTAVTLEHVPKALSPNSTISSAPKDFAIF 130
>pdb|4DXR|A Chain A, Human Sun2-Kash1 Complex
pdb|4DXS|A Chain A, Human Sun2-Kash2 Complex
Length = 202
Score = 171 bits (432), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 84/169 (49%), Positives = 111/169 (65%), Gaps = 3/169 (1%)
Query: 76 HILRRDCGSVIDIRCTETYTLKDPYYVLFGYALWRRDSSPRKAIQPGLLPGDCWAFQGAI 135
+ L SVI RC+ETY K LFG LW SPR +QP + PG+CWAFQG
Sbjct: 34 YALESGGASVISTRCSETYETKTALLSLFGIPLWYHSQSPRVILQPDVHPGNCWAFQGPQ 93
Query: 136 GCLVLKLSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYD 195
G V++LS RI+ T ++EH+PKAL+PN I SAPK FA++G E + TLLG+F YD
Sbjct: 94 GFAVVRLSARIRPTAVTLEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLLGKFTYD 153
Query: 196 SEGPTLQ--YFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLA 242
+G +Q +F+A +A T+ +VEL+IL+N G+ EYTC+YRFRVHG A
Sbjct: 154 QDGEPIQTFHFQAPTMA-TYQVVELRILTNWGHPEYTCIYRFRVHGEPA 201
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 35/50 (70%)
Query: 302 NGMAFQGAIGCLVLKLSHRIQVTRFSMEHIPKTLTPNGIIDSAPKKFAVW 351
N AFQG G V++LS RI+ T ++EH+PK L+PN I SAPK FA++
Sbjct: 85 NCWAFQGPQGFAVVRLSARIRPTAVTLEHVPKALSPNSTISSAPKDFAIF 134
>pdb|1YBZ|A Chain A, Conserved Hypothetical Protein From Pyrococcus Furiosus
Pfu-1581948- 001
Length = 91
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 40 NIKCSDKVRNEEVLRRIGEERSILRTI 66
N+ D+ R EEVLRR GE R I I
Sbjct: 55 NLPIEDRKREEEVLRRAGEFREIFEKI 81
>pdb|3NWC|A Chain A, Crystal Structure Of The Pyrococcus Furiosus Smc Protein
Hinge Domain
pdb|3NWC|B Chain B, Crystal Structure Of The Pyrococcus Furiosus Smc Protein
Hinge Domain
Length = 189
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 11 LYGSETWTMRKKEETYLESFEMWLWRRIENIKCSDKVRNEEVLRRIGEER 60
+YG+ ++ K+E Y + E+ L R +N+ D++ E+ ++ + E +
Sbjct: 36 IYGTLAELIKVKDEAYALAIEVALGNRADNVVVEDELVAEKAIKYLKEHK 85
>pdb|2J1K|C Chain C, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|D Chain D, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|E Chain E, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|F Chain F, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|H Chain H, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|I Chain I, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|L Chain L, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|M Chain M, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|N Chain N, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|Q Chain Q, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|R Chain R, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|S Chain S, Cav-2 Fibre Head In Complex With Car D1
pdb|2J2J|A Chain A, Canine Adenovirus Fibre Head At 1.5 A Resolution
pdb|2J2J|B Chain B, Canine Adenovirus Fibre Head At 1.5 A Resolution
pdb|2J2J|C Chain C, Canine Adenovirus Fibre Head At 1.5 A Resolution
pdb|2J2J|D Chain D, Canine Adenovirus Fibre Head At 1.5 A Resolution
pdb|2J2J|E Chain E, Canine Adenovirus Fibre Head At 1.5 A Resolution
pdb|2J2J|F Chain F, Canine Adenovirus Fibre Head At 1.5 A Resolution
pdb|2W9L|C Chain C, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|D Chain D, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|E Chain E, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|F Chain F, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|H Chain H, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|I Chain I, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|L Chain L, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|M Chain M, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|N Chain N, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|Q Chain Q, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|R Chain R, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|S Chain S, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
Length = 197
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 185 NPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPS 244
N + +GE Y PT F M D F L + GNI T + + GN
Sbjct: 54 NASFVGEGGYRIVSPTQSQFSLIMEFDQFGQ-----LMSTGNINSTTTWGEKPWGNNTVQ 108
Query: 245 PSPVHTY 251
P P HT+
Sbjct: 109 PRPSHTW 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,504,089
Number of Sequences: 62578
Number of extensions: 465837
Number of successful extensions: 947
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 932
Number of HSP's gapped (non-prelim): 14
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)