Query psy13339
Match_columns 365
No_of_seqs 313 out of 679
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 16:54:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13339.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13339hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2687|consensus 100.0 3.6E-50 7.8E-55 397.0 20.3 183 61-244 230-413 (414)
2 PF07738 Sad1_UNC: Sad1 / UNC- 100.0 9.2E-38 2E-42 270.1 13.8 129 110-241 3-135 (135)
3 KOG2687|consensus 99.9 1.1E-25 2.5E-30 223.1 8.5 102 262-365 249-359 (414)
4 PF07738 Sad1_UNC: Sad1 / UNC- 99.7 1.9E-17 4E-22 143.2 7.1 74 288-364 2-83 (135)
5 cd00057 FA58C Substituted upda 97.8 0.00065 1.4E-08 57.9 12.9 112 113-239 24-143 (143)
6 KOG1396|consensus 97.7 2.7E-06 5.9E-11 86.9 -2.6 144 72-245 124-268 (530)
7 TIGR02961 allantoicase allanto 97.4 0.026 5.6E-07 55.9 20.0 234 73-356 2-260 (322)
8 cd08366 APC10 APC10 subunit of 97.1 0.014 3E-07 51.3 13.2 110 122-239 25-139 (139)
9 PF00754 F5_F8_type_C: F5/8 ty 97.1 0.013 2.9E-07 48.0 12.2 111 114-235 16-129 (129)
10 PRK13257 allantoicase; Provisi 97.0 0.15 3.3E-06 50.8 20.4 228 69-355 13-270 (336)
11 cd08667 APC10-ZZEF1 APC10/DOC1 96.6 0.05 1.1E-06 47.3 12.2 109 122-239 21-131 (131)
12 cd08159 APC10-like APC10-like 96.5 0.059 1.3E-06 46.8 11.9 107 122-238 21-129 (129)
13 PRK13797 putative bifunctional 96.1 1.1 2.3E-05 47.5 20.9 238 72-356 9-272 (516)
14 cd08365 APC10-like1 APC10-like 95.8 0.23 5E-06 43.3 12.3 106 122-237 22-130 (131)
15 cd08665 APC10-CUL7 APC10-like 95.7 0.25 5.4E-06 43.1 11.9 109 122-239 21-131 (131)
16 PF03256 APC10: Anaphase-promo 95.6 0.084 1.8E-06 48.8 9.4 115 121-243 52-170 (193)
17 PF06201 PITH: PITH domain; I 95.3 0.16 3.5E-06 45.1 9.7 88 137-240 48-151 (152)
18 cd08666 APC10-HECTD3 APC10-lik 94.6 1.1 2.3E-05 39.3 12.8 105 122-237 26-133 (134)
19 PRK13257 allantoicase; Provisi 93.7 1.5 3.3E-05 43.8 13.3 113 114-242 205-335 (336)
20 PRK13797 putative bifunctional 92.5 2.1 4.5E-05 45.3 13.0 125 114-254 206-346 (516)
21 PF03561 Allantoicase: Allanto 92.3 3.7 8.1E-05 36.6 12.5 100 126-239 38-152 (152)
22 TIGR02961 allantoicase allanto 90.7 4.5 9.7E-05 40.4 12.5 135 73-240 172-322 (322)
23 cd08664 APC10-HERC2 APC10-like 90.5 6.2 0.00013 35.3 11.9 102 125-237 47-151 (152)
24 KOG3437|consensus 87.7 15 0.00033 33.7 12.5 121 113-243 37-161 (184)
25 PF06588 Muskelin_N: Muskelin 81.5 4.5 9.8E-05 37.6 6.4 120 114-242 20-149 (199)
26 COG5156 DOC1 Anaphase-promotin 78.4 28 0.0006 31.5 10.1 116 114-239 42-162 (189)
27 PF14958 DUF4506: Domain of un 76.3 44 0.00094 29.4 10.7 92 136-246 16-111 (138)
28 PF00754 F5_F8_type_C: F5/8 ty 70.5 15 0.00031 29.7 6.2 54 298-357 23-78 (129)
29 smart00231 FA58C Coagulation f 55.2 1.3E+02 0.0028 25.4 11.6 99 126-239 33-138 (139)
30 PF14652 DUF4457: Domain of un 52.7 96 0.0021 31.0 9.3 42 132-176 79-120 (329)
31 KOG0908|consensus 47.8 1.2E+02 0.0026 29.6 8.7 104 135-254 164-277 (288)
32 COG4266 Alc Allantoicase [Nucl 45.6 1.7E+02 0.0037 28.8 9.3 94 137-246 78-177 (334)
33 KOG1730|consensus 43.4 2.5E+02 0.0054 26.1 9.5 96 139-243 74-173 (206)
34 PF14652 DUF4457: Domain of un 36.1 2.5E+02 0.0055 28.0 9.4 42 307-351 79-120 (329)
35 PF12386 Peptidase_C71: Pseudo 33.2 78 0.0017 27.5 4.4 33 210-244 72-104 (142)
36 KOG4145|consensus 32.8 2.2E+02 0.0049 27.8 7.9 96 137-245 83-188 (340)
37 PF11303 DUF3105: Protein of u 30.6 20 0.00044 31.1 0.5 17 257-273 43-59 (130)
38 cd08159 APC10-like APC10-like 25.4 1.8E+02 0.0039 25.2 5.5 49 298-352 22-72 (129)
39 KOG2437|consensus 25.2 2.1E+02 0.0046 30.8 6.8 122 114-244 23-151 (723)
40 PF06588 Muskelin_N: Muskelin 23.1 1.4E+02 0.0031 27.8 4.7 39 308-352 42-80 (199)
41 KOG3038|consensus 20.4 80 0.0017 30.7 2.5 27 227-254 210-236 (264)
No 1
>KOG2687|consensus
Probab=100.00 E-value=3.6e-50 Score=396.96 Aligned_cols=183 Identities=36% Similarity=0.702 Sum_probs=174.7
Q ss_pred hHHHHHHhccccccceeeeccCCceeeccccCcccCCCCceeeecccccccccCccccccccCCCCCeeeccCCceEEEE
Q psy13339 61 SILRTIKKRKRSWLGHILRRDCGSVIDIRCTETYTLKDPYYVLFGYALWRRDSSPRKAIQPGLLPGDCWAFQGAIGCLVL 140 (365)
Q Consensus 61 ~il~~i~~drl~w~dhAlr~~Ga~vv~~~tS~ty~~~~~~~~~~g~~~~~~~~~P~~aL~p~~~pG~CW~f~Gs~G~L~I 140 (365)
-.++++.+|+++.+|||+.+.||+|+.+ ||.+|...+....+.++++|.+.++|.++|+|+..||+||||+|++|+++|
T Consensus 230 ~~i~~~~~d~v~~~DYAl~s~GAsI~~~-~S~~y~~~~~~~~~~~i~~~~~~~~P~vil~~~v~PG~Cw~FkGsrg~v~V 308 (414)
T KOG2687|consen 230 MEIQRLAEDGVGKVDYALESGGASIDSE-CSETYKSDKALLFWNGISLWNHHQPPRVILQPNVSPGECWAFKGSRGYVTV 308 (414)
T ss_pred HHHHHHhccccCcchhhhhcCCcEEEee-cccccccCCcceEeeccccccccCCCceEecCCCCccceeeecCCceEEEE
Confidence 4677899999999999999999999999 999999999888899999999999999999999999999999999999999
Q ss_pred EcCceeEEEEEEEEecCCCCCCCCCCCCCCcEEEEEEEecCCCCCceeEEEEEEcCCCCceeEEEecCC-CcceeEEEEE
Q psy13339 141 KLSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMV-ADTFDMVELK 219 (365)
Q Consensus 141 ~Ls~~I~~~~vsieHi~~~~s~~~~~~SAPr~f~V~g~~~~~~~~~~~Lg~f~Yd~~g~~~Q~F~v~~~-~~~~~~V~lr 219 (365)
+|+++|+|++|||||++++++|+++++||||+|.|||+.++..++.++||+|+||.++.++|+|.++.. ..+|+.|+|+
T Consensus 309 ~La~~Iip~avTleHv~~sVspd~~~sSAPKdf~V~g~~~~~~~~~~LLG~ftYD~d~~~~QtF~~q~~~~~~~~~V~l~ 388 (414)
T KOG2687|consen 309 RLARFIIPSAVTLEHVPKSVSPDGNISSAPKDFDVFGSTQDCTEEEVLLGEFTYDLDGSPIQTFSLQHDTSAPFKTVELR 388 (414)
T ss_pred EecceEEeeeeeeecccceecCCCCcCcCCcceEEEeecccCCcCceeeEEEEECCCCCcceEEeccCCCccccceEEEE
Confidence 999999999999999999999999999999999999999976777899999999999999999999987 6679999999
Q ss_pred EeecCCCCCCceEEEEEEeeeeCCC
Q psy13339 220 ILSNHGNIEYTCLYRFRVHGNLAPS 244 (365)
Q Consensus 220 i~SN~G~~~yTClYR~RVhG~~~~~ 244 (365)
|+||||+++|||||||||||+++++
T Consensus 389 ~~SN~G~p~fTCiYR~RVhG~~~~~ 413 (414)
T KOG2687|consen 389 FNSNHGHPKFTCIYRFRVHGRPVDP 413 (414)
T ss_pred EecCCCCCCceEEEEEEEcCccCCC
Confidence 9999999999999999999997654
No 2
>PF07738 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: IPR012919 The Caenorhabditis elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localises at the spindle pole body. UNC-84 and Sad1 share a common C-terminal region that is often termed the SUN (Sad1 and UNC) domain [, ]. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2 []. The SUN domain of Sun2 has been demonstrated to be in the periplasm []. ; PDB: 4DXT_A 3UNP_A 4DXR_A 4DXS_A.
Probab=100.00 E-value=9.2e-38 Score=270.08 Aligned_cols=129 Identities=47% Similarity=0.881 Sum_probs=98.0
Q ss_pred ccccCcccccccc---CCCCCeeeccCCceEEEEEcCceeEEEEEEEEecCCCCCCCCCCCCCCcEEEEEEEecCCCCCc
Q psy13339 110 RRDSSPRKAIQPG---LLPGDCWAFQGAIGCLVLKLSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDENP 186 (365)
Q Consensus 110 ~~~~~P~~aL~p~---~~pG~CW~f~Gs~G~L~I~Ls~~I~~~~vsieHi~~~~s~~~~~~SAPr~f~V~g~~~~~~~~~ 186 (365)
...++|+.||+++ ..||+||||+|++|+|+|+|+++|.|++|+|+|+++.+++ ++||||+|+|||..+..+..+
T Consensus 3 ~~~~~p~~il~~~~~~~~~g~Cw~~~g~~~~~~I~L~~~I~v~~v~i~h~~~~~~~---~sSapk~f~V~g~~~~~~~~~ 79 (135)
T PF07738_consen 3 PEAKPPSNILSPDKDSYMPGPCWAFEGSKGWLTIELSEPIYVTSVTIEHVEKSIAP---FSSAPKDFEVWGSVDYPDEEW 79 (135)
T ss_dssp EE---GGGGGSS-----STT-SEEEETT-EEEEEEEEEEEEEEEEEEE---GGGSG----TTSB-EEEEEEESSSSTS--
T ss_pred cccCChhheECCCCCcccCCccCccCCCceEEEEEcCCcEEEEEEEEEEeccccCC---cCCCCcEEEEEEEecccccce
Confidence 3567999999999 8999999999999999999999999999999999998876 799999999999999988779
Q ss_pred eeEEEEEEcCCCCceeEEEecCC-CcceeEEEEEEeecCCCCCCceEEEEEEeeee
Q psy13339 187 TLLGEFMYDSEGPTLQYFEAKMV-ADTFDMVELKILSNHGNIEYTCLYRFRVHGNL 241 (365)
Q Consensus 187 ~~Lg~f~Yd~~g~~~Q~F~v~~~-~~~~~~V~lri~SN~G~~~yTClYR~RVhG~~ 241 (365)
+.||+|+|+.++.++|+|+|+.. ..+++.|+|+|+||||+++|||||||||||+.
T Consensus 80 ~~LG~f~y~~~~~~~QtF~l~~~~~~~~~~i~l~i~sN~G~~~ytclyr~rVhG~~ 135 (135)
T PF07738_consen 80 VLLGEFEYDSDGNSIQTFPLPRPPRQPVRYIKLRILSNHGNEEYTCLYRFRVHGES 135 (135)
T ss_dssp EEEEEEE--TTS-SEEEEE-SS--S--EEEEEEEE--BSS-SSEEEE-EEEEEEE-
T ss_pred eeeceEEEcCCcCccEeeeeccCchhcCcEEEEEEEcCCCCCceEEEEEEEEEeeC
Confidence 99999999999999999999986 34899999999999999999999999999973
No 3
>KOG2687|consensus
Probab=99.92 E-value=1.1e-25 Score=223.14 Aligned_cols=102 Identities=25% Similarity=0.341 Sum_probs=92.3
Q ss_pred ccceeeeccCCCCccccc----cccccceeeeeccCCcCC----CCCCCeeeeeCCeeEEEEEecceeEeeEEEEeecCC
Q psy13339 262 LHHMTSSKYNPSGTEEEK----SNRSVALTWVMFQSHRAG----KMRTNGMAFQGAIGCLVLKLSHRIQVTRFSMEHIPK 333 (365)
Q Consensus 262 ~~~~~~~~~~~s~~~~~~----~~~~~~~~~~~~~~p~~~----~~pg~cw~f~g~~g~~~i~l~~~i~~~~~tleHi~~ 333 (365)
|-||.|+-. ||-||... ||+++ .+|+++|+|+++ ++||+||||+|++|+++|+|+++|+|++||||||||
T Consensus 249 s~GAsI~~~-~S~~y~~~~~~~~~~~i-~~~~~~~~P~vil~~~v~PG~Cw~FkGsrg~v~V~La~~Iip~avTleHv~~ 326 (414)
T KOG2687|consen 249 SGGASIDSE-CSETYKSDKALLFWNGI-SLWNHHQPPRVILQPNVSPGECWAFKGSRGYVTVRLARFIIPSAVTLEHVPK 326 (414)
T ss_pred cCCcEEEee-cccccccCCcceEeecc-ccccccCCCceEecCCCCccceeeecCCceEEEEEecceEEeeeeeeecccc
Confidence 689999988 99998764 45544 478999999886 799999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCceeEEEEeec-CCCceecccC
Q psy13339 334 TLTPNGIIDSAPKKFAVWVSEH-SQCNVTFLLQ 365 (365)
Q Consensus 334 ~~~~~~~~~sapk~f~v~g~~~-~~~~~~~l~~ 365 (365)
+++|+|+++||||||.|||+.+ ..++++|||+
T Consensus 327 sVspd~~~sSAPKdf~V~g~~~~~~~~~~LLG~ 359 (414)
T KOG2687|consen 327 SVSPDGNISSAPKDFDVFGSTQDCTEEEVLLGE 359 (414)
T ss_pred eecCCCCcCcCCcceEEEeecccCCcCceeeEE
Confidence 9999999999999999999999 5678889885
No 4
>PF07738 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: IPR012919 The Caenorhabditis elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localises at the spindle pole body. UNC-84 and Sad1 share a common C-terminal region that is often termed the SUN (Sad1 and UNC) domain [, ]. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2 []. The SUN domain of Sun2 has been demonstrated to be in the periplasm []. ; PDB: 4DXT_A 3UNP_A 4DXR_A 4DXS_A.
Probab=99.70 E-value=1.9e-17 Score=143.20 Aligned_cols=74 Identities=32% Similarity=0.417 Sum_probs=55.7
Q ss_pred eeeccCCcCC-------CCCCCeeeeeCCeeEEEEEecceeEeeEEEEeecCCCCCCCCCCCCCCceeEEEEeecCCCc-
Q psy13339 288 WVMFQSHRAG-------KMRTNGMAFQGAIGCLVLKLSHRIQVTRFSMEHIPKTLTPNGIIDSAPKKFAVWVSEHSQCN- 359 (365)
Q Consensus 288 ~~~~~~p~~~-------~~pg~cw~f~g~~g~~~i~l~~~i~~~~~tleHi~~~~~~~~~~~sapk~f~v~g~~~~~~~- 359 (365)
|++..+|..+ .+||+||+|.|++|+|+|+|+.+|.|++|||+|+++++++ ++||||+|+|||..+...+
T Consensus 2 ~~~~~~p~~il~~~~~~~~~g~Cw~~~g~~~~~~I~L~~~I~v~~v~i~h~~~~~~~---~sSapk~f~V~g~~~~~~~~ 78 (135)
T PF07738_consen 2 NPEAKPPSNILSPDKDSYMPGPCWAFEGSKGWLTIELSEPIYVTSVTIEHVEKSIAP---FSSAPKDFEVWGSVDYPDEE 78 (135)
T ss_dssp EEE---GGGGGSS-----STT-SEEEETT-EEEEEEEEEEEEEEEEEEE---GGGSG----TTSB-EEEEEEESSSSTS-
T ss_pred CcccCChhheECCCCCcccCCccCccCCCceEEEEEcCCcEEEEEEEEEEeccccCC---cCCCCcEEEEEEEecccccc
Confidence 4566666654 6789999999999999999999999999999999999998 8999999999999998776
Q ss_pred eeccc
Q psy13339 360 VTFLL 364 (365)
Q Consensus 360 ~~~l~ 364 (365)
.++||
T Consensus 79 ~~~LG 83 (135)
T PF07738_consen 79 WVLLG 83 (135)
T ss_dssp -EEEE
T ss_pred eeeec
Confidence 67776
No 5
>cd00057 FA58C Substituted updates: Jan 31, 2002
Probab=97.76 E-value=0.00065 Score=57.85 Aligned_cols=112 Identities=15% Similarity=0.101 Sum_probs=80.3
Q ss_pred cCccccccccCCCCCeeeccC--CceEEEEEcCceeEEEEEEEEecCCCCCCCCCCCCCCcEEEEEEEecCCCCCceeEE
Q psy13339 113 SSPRKAIQPGLLPGDCWAFQG--AIGCLVLKLSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDENPTLLG 190 (365)
Q Consensus 113 ~~P~~aL~p~~~pG~CW~f~G--s~G~L~I~Ls~~I~~~~vsieHi~~~~s~~~~~~SAPr~f~V~g~~~~~~~~~~~Lg 190 (365)
..|..+ + ..++.+||... ....|.|.|.++..|+.|.+...... ....-++.|+|.+..|. ..+..+.
T Consensus 24 ~~~~~~-d--g~~~t~W~~~~~~~~~wi~vDL~~~~~i~~v~i~~~~~~-----~~~~~~~~~~i~~s~dg--~~W~~~~ 93 (143)
T cd00057 24 WEASRA-R--LNSDNAWTPAVNDPPQWLQVDLGKTRRVTGIQTQGRKGG-----GSSEWVTSYKVQYSLDG--ETWTTYK 93 (143)
T ss_pred CCcCee-e--cCCCCcccCCCCCCCceEEEECCCCEEEEEEEEccCCCC-----CccCeeEEEEEEEECCC--CCEeEEE
Confidence 355555 3 34478999875 45689999999999999999764321 13457999999877663 2355554
Q ss_pred E----EEEc--CCCCceeEEEecCCCcceeEEEEEEeecCCCCCCceEEEEEEee
Q psy13339 191 E----FMYD--SEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHG 239 (365)
Q Consensus 191 ~----f~Yd--~~g~~~Q~F~v~~~~~~~~~V~lri~SN~G~~~yTClYR~RVhG 239 (365)
+ ..|. .++...+++.++. ....++|+|.++++.| +-|| +|.|||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~-pv~aRyvRl~~~~~~~---~~~l-e~evyG 143 (143)
T cd00057 94 DKGEEKVFTGNSDGSTPVTNDFPP-PIVARYIRILPTTWNG---NISL-RLELYG 143 (143)
T ss_pred cCCcEEEEeCCcCCCeEEEEeCCC-CEEEEEEEEEEeecCC---ccEE-EEEEcC
Confidence 3 2333 3345678888876 3558999999999888 7999 999998
No 6
>KOG1396|consensus
Probab=97.74 E-value=2.7e-06 Score=86.94 Aligned_cols=144 Identities=19% Similarity=0.223 Sum_probs=103.2
Q ss_pred cccceeeeccCCceeeccccCcccCCCCceeeecccccccccCccccccccCCCCCeeeccCCceEEEEEcCceeEEEEE
Q psy13339 72 SWLGHILRRDCGSVIDIRCTETYTLKDPYYVLFGYALWRRDSSPRKAIQPGLLPGDCWAFQGAIGCLVLKLSHRIQVTRF 151 (365)
Q Consensus 72 ~w~dhAlr~~Ga~vv~~~tS~ty~~~~~~~~~~g~~~~~~~~~P~~aL~p~~~pG~CW~f~Gs~G~L~I~Ls~~I~~~~v 151 (365)
...+||+.+-||.|+... -++-.. . .++.- .-.-.+|.|... ..-+++|.|++.|.++.|
T Consensus 124 kr~NyAS~~cgAkIi~~n-~ea~~~-~---ail~~------dkd~yllnpcss---------~~K~vviel~e~~lv~~~ 183 (530)
T KOG1396|consen 124 KRYNYASAECGAKILAAN-PEAKGA-S---AILLE------DKDKYLLNPCSS---------EKKFVVIELCERILVNTL 183 (530)
T ss_pred cccchhhhhhhhHHHhcC-hhhccc-h---hhhhh------chHHHhhccccc---------ccceEEeehhHHHhhhhe
Confidence 348999999999998642 111110 0 11100 111223333322 256899999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCcEEEEEEEecCCCCCceeEEEEEEcCCCCceeEEEecCCCcceeEEEEEEeecCCCCCCce
Q psy13339 152 SMEHIPKALTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTC 231 (365)
Q Consensus 152 sieHi~~~~s~~~~~~SAPr~f~V~g~~~~~~~~~~~Lg~f~Yd~~g~~~Q~F~v~~~~~~~~~V~lri~SN~G~~~yTC 231 (365)
.|.... ..+|-||+|+|.+-.-.....+..+|+|.--.. ..+|+|..++ ..=.+++++.++|.||. ++.|
T Consensus 184 ~ian~e-------~~ss~pk~f~v~~s~~~P~~~w~~~G~f~a~N~-r~lQsF~~n~-~~wakYlKIellsHygs-EfyC 253 (530)
T KOG1396|consen 184 RIANFE-------HFSSPPKDFSVSISIRYPTPSWIHLGQFHARNE-RNLQSFPLNE-QKWAKYLKIELLSHYGS-EFYC 253 (530)
T ss_pred eeeeec-------ccCCCCCceeeccccccCCccceecCcccccch-hhhcCCCCCc-hhhhhHhhhhhhhhccc-cccc
Confidence 988762 567899999998866555556899999987666 8999999554 45578999999999997 8888
Q ss_pred -EEEEEEeeeeCCCC
Q psy13339 232 -LYRFRVHGNLAPSP 245 (365)
Q Consensus 232 -lYR~RVhG~~~~~~ 245 (365)
+--+||+|....++
T Consensus 254 pvSli~VyG~tm~Ee 268 (530)
T KOG1396|consen 254 PVSLIRVYGKTMVEE 268 (530)
T ss_pred chhhhhhhchhHHHH
Confidence 77889999976654
No 7
>TIGR02961 allantoicase allantoicase. A different but similarly named enzyme, allantoate amidohydrolase (EC 3.5.3.9), simultaneously breaks down the urea to ammonia and carbon dioxide.
Probab=97.41 E-value=0.026 Score=55.92 Aligned_cols=234 Identities=14% Similarity=0.159 Sum_probs=137.5
Q ss_pred ccceeeeccCCceeeccccCc-ccCCCCceeeecccccccccCccc---cccccCCCCCeeeccCCce----EEEEEcCc
Q psy13339 73 WLGHILRRDCGSVIDIRCTET-YTLKDPYYVLFGYALWRRDSSPRK---AIQPGLLPGDCWAFQGAIG----CLVLKLSH 144 (365)
Q Consensus 73 w~dhAlr~~Ga~vv~~~tS~t-y~~~~~~~~~~g~~~~~~~~~P~~---aL~p~~~pG~CW~f~Gs~G----~L~I~Ls~ 144 (365)
++|-|....|++|+. +|.. |.....++ .+.+|.. ...+.-.-++.|-....+. .+.|+|+.
T Consensus 2 ~~dLa~~~~Gg~vl~--~sDe~Fa~~~nLl---------~p~~~~f~~~~f~~~G~~~DGWETRRrR~~g~DW~ivkLg~ 70 (322)
T TIGR02961 2 LVNLADRRLGGKVLF--ASDEFFAPAENLL---------KPEAPEFKPGVFDEFGKWMDGWETRRKRGAGHDWCIVRLGV 70 (322)
T ss_pred ccceehhhcCCEEEE--EccchhcCHHhcc---------CCCCCccccccccccCccccCccccccCCCCCCEEEEEeCC
Confidence 578889999999996 3433 33322221 1112211 1111123456776665432 68999999
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCCCcEEEEEEEecCCCCCceeEE--EEEEcC-----CCCceeEEEecCCCcceeEEE
Q psy13339 145 RIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDENPTLLG--EFMYDS-----EGPTLQYFEAKMVADTFDMVE 217 (365)
Q Consensus 145 ~I~~~~vsieHi~~~~s~~~~~~SAPr~f~V~g~~~~~~~~~~~Lg--~f~Yd~-----~g~~~Q~F~v~~~~~~~~~V~ 217 (365)
|-+|..|.|+=.. -....|-.++|-|+.++.......+. .|+-=. .+.....|.|.. ..++.+|+
T Consensus 71 ~G~I~~v~vDTa~-------F~GN~p~~~siea~~~~~~~~~~~~~~~~W~ell~~t~l~~~~~h~f~v~~-~~~~THvR 142 (322)
T TIGR02961 71 PGVIHGVDIDTSF-------FTGNYPPAVSIEACLSPEPSPEILLDSTEWVELLPRTELGPSQHHYFEVSS-KQRFTHIR 142 (322)
T ss_pred CcEEEEEEEeCcc-------cCCCCCCeEEEEEEeCCCCCccccccCCCCcEeecccccCCCceeeEEcCC-CCceEEEE
Confidence 9999999998543 33457888999998854321111111 122111 235567788765 57799999
Q ss_pred EEEeecCCCCCCceEEEEEEeeeeCCCCCcccc--cccccccccccccceeeeccCCCCccccccccccceeeeeccCCc
Q psy13339 218 LKILSNHGNIEYTCLYRFRVHGNLAPSPSPVHT--YNRFSSANHNTLHHMTSSKYNPSGTEEEKSNRSVALTWVMFQSHR 295 (365)
Q Consensus 218 lri~SN~G~~~yTClYR~RVhG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~p~ 295 (365)
|.+-=--| +-||||||++.++++.+.. +-+.. ...+|+.+. .+|...-....|+| ...++--
T Consensus 143 Lni~PDGG------iaRlRvyG~~~~d~~~~~~~~~~DLa----a~~nGg~vl--~~sD~~fg~~~Nli----~pg~~~~ 206 (322)
T TIGR02961 143 LNIYPDGG------IARLRVYGIVVPDWSLLDADETVDLA----ALENGGVVV--ACSDAHFGHPDNLI----GPGRGRN 206 (322)
T ss_pred EEEECCCC------eeeEEeeccccCCcccccccccccee----ecccCCEEE--EecccccCCHHHcc----CCCcccc
Confidence 99988877 7899999999988764332 11110 125788887 44442222222222 1100000
Q ss_pred CC--------CCCCCeeeeeCCeeEEEEEecceeEeeEEEEeecCCCCCCCCCCCCCCceeEEEEeecC
Q psy13339 296 AG--------KMRTNGMAFQGAIGCLVLKLSHRIQVTRFSMEHIPKTLTPNGIIDSAPKKFAVWVSEHS 356 (365)
Q Consensus 296 ~~--------~~pg~cw~f~g~~g~~~i~l~~~i~~~~~tleHi~~~~~~~~~~~sapk~f~v~g~~~~ 356 (365)
.. +.||+= .++|+|..|-.|..|.|+= +. -....|..++|.|..-+
T Consensus 207 mgDGWETrRrR~pG~D--------W~IvkLg~~G~I~~i~VDT-----~~--FkGN~P~~~si~a~~~~ 260 (322)
T TIGR02961 207 MGDGWETARRRDPGND--------WAIVRLGAPGEIERIEVDT-----AH--FKGNYPDSCSLQAADLE 260 (322)
T ss_pred cccCcceeeccCCCCC--------EEEEEcCCCCeEEEEEEeC-----Cc--cCCCCCCeEEEEEEeCC
Confidence 00 345544 4689999999998888862 22 24568888888886543
No 8
>cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination. This model represents the single domain protein APC10, a subunit of the anaphase-promoting complex (APC), which is a multi-subunit E3 ubiquitin ligase. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a vital component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC (also known as the cyclosome), is a cell cycle-regulated E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. In mitosis, the APC initiates sister chromatid separation by ubiquitinating the anaphase inhibitor securin and triggers exit from mitosis by ubiquitinating cyclin B. The C-terminus of APC10 binds to CDC27/APC3, an APC subunit that contains multiple tetratrico peptide repeats. APC10 domains are homologous to the DOC1 domains present in the
Probab=97.12 E-value=0.014 Score=51.28 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=82.5
Q ss_pred cCCCCCeeeccCCce-EEEEEcCceeEEEEEEEEecCCCCCCCCCCCCCCcEEEEEEEecCCCCCceeEEEEEEcCCCCc
Q psy13339 122 GLLPGDCWAFQGAIG-CLVLKLSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPT 200 (365)
Q Consensus 122 ~~~pG~CW~f~Gs~G-~L~I~Ls~~I~~~~vsieHi~~~~s~~~~~~SAPr~f~V~g~~~~~~~~~~~Lg~f~Yd~~g~~ 200 (365)
+.++..||-..|+.. .|+|++.+++.+..+++.=-.+ -|-+=.|+.+.|.|=.+..+- ..+...+.+.. .+
T Consensus 25 D~~~~TyWQSDg~qPH~I~i~f~k~~~i~~l~i~vd~~-----~DeSYtP~~I~v~~G~~~~dl--~e~~~v~l~~p-~G 96 (139)
T cd08366 25 DDSLDTYWQSDGPQPHLINIQFSKKTDISAVALYLDYK-----LDESYTPSKISIRAGTSPHDL--QEVRTVELEEP-NG 96 (139)
T ss_pred CCCCCccCCCCCCCCEEEEEEecCCcEEEEEEEEEccC-----CCCCCCCEEEEEEEECCcCch--hheEEEEcCCC-CE
Confidence 456678999998876 7999999999999998875432 144568999999976665442 45556665555 44
Q ss_pred eeEEEecCC----CcceeEEEEEEeecCCCCCCceEEEEEEee
Q psy13339 201 LQYFEAKMV----ADTFDMVELKILSNHGNIEYTCLYRFRVHG 239 (365)
Q Consensus 201 ~Q~F~v~~~----~~~~~~V~lri~SN~G~~~yTClYR~RVhG 239 (365)
-..+.+... ...+..|++.|++||-|..-|-+-.+||+|
T Consensus 97 wv~i~l~~~~~~~~~~~~~iqi~I~~nh~nG~DthiR~iki~g 139 (139)
T cd08366 97 WVHIPLEDNRDGKPLRTFFLQIAILSNHQNGRDTHIRQIKVYG 139 (139)
T ss_pred EEEEEccCCCCCCeeEEEEEEEEEecccCCCCCcceeeeEecC
Confidence 555555532 245779999999999999999999999987
No 9
>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain. In the Dictyostelium discoideum (Slime mold) cell adhesion protein discoidin, a related domain, named discoidin I-like domain, DLD, or DS, has been found which shares a common C-terminal region of about 110 amino acids with the FA58C domain, but whose N-terminal 40 amino acids are much less conserved. Similar domains have been detected in other extracellular and membrane proteins [, , ] In coagulation factors V and VIII the repeated domains compose part of a larger functional domain which promotes binding to anionic phospholipids on the surface of platelets and endothelial cells []. The C-terminal domain of the second FA58C repeat (C2) of coagulation factor VIII has been shown to be responsible for phosphatidylserine-binding and essential for activity [, ]. It forms an amphipathic alpha-helix, which binds to the membrane []. FA58C contains two conserved cysteines in most proteins, which link the extremities of the domain by a disulphide bond [, , ]. A further disulphide bond is located near the C-terminal of the second FA58C domain in MFGM Q08431 from SWISSPROT []. +------------------------------------------------------------------------+ | +-+ | | | | | CxPLGxxQITASxxxxxRLxxxWxxxxWxxxxxxQGxxxxxxxxxxxxGNxxxxxxxxxxRxPxcxcLRxExGC 'C': conserved cysteine involved in a disulphide bond. 'c': cysteine involved in a disulphide bond in MFGM Q08431 from SWISSPROT. 'x': any amino acid. upper case letters: conserved residues. ; GO: 0007155 cell adhesion; PDB: 2J22_A 3CQO_C 1SDD_B 2VCA_A 2VC9_A 2VCC_A 2VCB_A 2J1E_A 2J7M_A 2J1A_A ....
Probab=97.07 E-value=0.013 Score=47.99 Aligned_cols=111 Identities=13% Similarity=0.208 Sum_probs=77.3
Q ss_pred CccccccccCCCCCeeecc--CCceEEEEEcCceeEEEEEEEEecCCCCCCCCCCCCCCcEEEEEEEecCCCCCceeEEE
Q psy13339 114 SPRKAIQPGLLPGDCWAFQ--GAIGCLVLKLSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDENPTLLGE 191 (365)
Q Consensus 114 ~P~~aL~p~~~pG~CW~f~--Gs~G~L~I~Ls~~I~~~~vsieHi~~~~s~~~~~~SAPr~f~V~g~~~~~~~~~~~Lg~ 191 (365)
+|..+++.+ ++.+||.. +....|.|.|.++..++.|.|..-.... ...|+.|.|....|. ..+..+.+
T Consensus 16 ~~~~~~Dg~--~~t~W~~~~~~~~~~i~idl~~~~~i~~i~i~~~~~~~------~~~~~~~~i~~s~dg--~~w~~~~~ 85 (129)
T PF00754_consen 16 PASNAFDGD--PSTAWCSNWDDSPQWIQIDLGKPYTISGISIQFRNDGN------NGRPKSFKIEYSNDG--SNWTTVAS 85 (129)
T ss_dssp GGGGGGSSS--TTSSEEESSSSSTEEEEEEEEEEEEEEEEEEEEESSTT------TEEEEEEEEEEESSS--SSEEEEEE
T ss_pred hHHheEeCC--CCCEEECCCCCCCceEEEEeeeeEecceeeeccccccc------ceeeeeeeeeeeccc--cccccccc
Confidence 567777766 89999994 6678999999999999999999764221 148999999998666 24677776
Q ss_pred EEEcC-CCCceeEEEecCCCcceeEEEEEEeecCCCCCCceEEEE
Q psy13339 192 FMYDS-EGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRF 235 (365)
Q Consensus 192 f~Yd~-~g~~~Q~F~v~~~~~~~~~V~lri~SN~G~~~yTClYR~ 235 (365)
..++. +....+...+.. ....+.|+|.+++-.|...+.+++-|
T Consensus 86 ~~~~~~~~~~~~~~~~~~-~~~~ryiri~~~~~~~~~~~~~i~Ei 129 (129)
T PF00754_consen 86 QFYGNTNSGSVVTISFFP-PVKARYIRITVTSWNGNNGWVSIAEI 129 (129)
T ss_dssp TEEEESSSSSSEEEEEEE-EEEEEEEEEEEEEEESCSSEEEEEEE
T ss_pred ceeeccCCCceEEEEeCC-CeEEEEEEEEEEEECCCCceEEEEeC
Confidence 43322 333334433443 24578999999864444467777643
No 10
>PRK13257 allantoicase; Provisional
Probab=96.98 E-value=0.15 Score=50.84 Aligned_cols=228 Identities=13% Similarity=0.114 Sum_probs=136.4
Q ss_pred ccccccceeeeccCCceeeccccC-cccCCCCceeeecccccccccCccc----------cccccC-----CCCCeeecc
Q psy13339 69 RKRSWLGHILRRDCGSVIDIRCTE-TYTLKDPYYVLFGYALWRRDSSPRK----------AIQPGL-----LPGDCWAFQ 132 (365)
Q Consensus 69 drl~w~dhAlr~~Ga~vv~~~tS~-ty~~~~~~~~~~g~~~~~~~~~P~~----------aL~p~~-----~pG~CW~f~ 132 (365)
+..+.+|-|+...|++|+. +|. -|.....++ .+.+|.. +.+.|. .||.=
T Consensus 13 ~~~~~~dLas~~~Gg~vl~--~sDe~Fa~~~nLl---------~p~~~~~~~~~f~~~Gk~~DGWETRRrR~~g~D---- 77 (336)
T PRK13257 13 FFRRYPNLADRRLGAQVLA--ASDEFFAEKERML---------NPEPAVFIPGKFDDHGKWMDGWETRRRRTTGHD---- 77 (336)
T ss_pred hhhcccceehhhcCCEEEE--EchhhhcCHHHcc---------CCCCCccccccccccCccccCccccccCCCCCC----
Confidence 4456799999999999996 343 343322221 1112211 222221 24444
Q ss_pred CCceEEEEEcCceeEEEEEEEEecCCCCCCCCCCCCCCcEEEEEEEecCCCC-----Cce-eEEEEEEcCCCCceeEEEe
Q psy13339 133 GAIGCLVLKLSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDE-----NPT-LLGEFMYDSEGPTLQYFEA 206 (365)
Q Consensus 133 Gs~G~L~I~Ls~~I~~~~vsieHi~~~~s~~~~~~SAPr~f~V~g~~~~~~~-----~~~-~Lg~f~Yd~~g~~~Q~F~v 206 (365)
.+.|+|+.|-.|..|.|+=.. -....|-.++|-|+..+.+. .++ +|..-. ..+.....|.|
T Consensus 78 ----W~IirLg~~G~I~~v~VDTa~-------F~GN~p~~~siea~~~~~~~~~~~~~W~ellp~~~--l~p~~~h~f~v 144 (336)
T PRK13257 78 ----WAIVRLGVPGVIRGVDVDTAH-------FTGNYPPAASVEACYVPDGYPSDAAEWTEIVPATT--LQGDSHHYFEV 144 (336)
T ss_pred ----EEEEEcCCCcEEEEEEEeccc-------cCCCCCCeEEEEEEecCCCCCccCCCceEeccccc--cCCCcEeeEEc
Confidence 468999999999999998543 33467889999998752111 122 221110 12355677887
Q ss_pred cCCCcceeEEEEEEeecCCCCCCceEEEEEEeeeeCCCCCcccccccccccccccccceeeeccCCCCccccccccccce
Q psy13339 207 KMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPSPSPVHTYNRFSSANHNTLHHMTSSKYNPSGTEEEKSNRSVAL 286 (365)
Q Consensus 207 ~~~~~~~~~V~lri~SN~G~~~yTClYR~RVhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 286 (365)
.. ..++.+|+|.+-=--| +-||||||++.+++..+.. .++ .|. ....|+.+. .+|...-....|+|
T Consensus 145 ~~-~~~~THvRLniyPDGG------vaRlRv~G~~~~d~~~~~~-~~i-DLa-a~~nGg~v~--~~SD~hfg~~~Nll-- 210 (336)
T PRK13257 145 DD-ARRFTHVRLNIYPDGG------VARLRVYGEPQPDWAFLDA-GEV-DLA-ALENGGRVV--ACSNQHFGSPSNLL-- 210 (336)
T ss_pred CC-CCceEEEEEEEECCCC------eeEEEEeeeecCChhhccc-ccc-chh-hhhcCCEEE--EecccccCCHHHee--
Confidence 65 5679999999988777 7899999999987763322 001 000 125788888 55553222223332
Q ss_pred eeeeccCCcCC--------CCCCCeeeeeCCeeEEEEEecceeEeeEEEEeecCCCCCCCCCCCCCCceeEEEEeec
Q psy13339 287 TWVMFQSHRAG--------KMRTNGMAFQGAIGCLVLKLSHRIQVTRFSMEHIPKTLTPNGIIDSAPKKFAVWVSEH 355 (365)
Q Consensus 287 ~~~~~~~p~~~--------~~pg~cw~f~g~~g~~~i~l~~~i~~~~~tleHi~~~~~~~~~~~sapk~f~v~g~~~ 355 (365)
..-.+-... +.||+= .++|+|..+-.|..|.|+= +. -...+|..++|.|..-
T Consensus 211 --~Pg~~~~mgDGWETrRrR~pG~D--------W~iikLg~~G~I~~ieVDT-----~~--FkGN~P~~~si~~~~~ 270 (336)
T PRK13257 211 --LPGRGVNMGDGWETRRRREPGND--------WVIVALAAPGVIRKIEVDT-----AH--FKGNFPDRCSLQAAYV 270 (336)
T ss_pred --CCCcccccccccccccccCCCCC--------EEEEEcCCCCEEEEEEEeC-----cc--cCCCCCCeEEEEEEec
Confidence 000000000 345544 4689999999999998863 22 3557999999999765
No 11
>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs. This model represents the APC10/DOC1-like domain present in the uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) of Mus musculus. Members of this family contain EF-hand, APC10, CUB, and zinc finger ZZ-type domains. ZZEF1-like APC10 domains are homologous to the APC10 subunit/DOC1 domains present in E3 ubiquitin ligases, which mediate substrate ubiquitination (or ubiquitylation), and are components of the ubiquitin-26S proteasome pathway for selective proteolytic degradation.
Probab=96.59 E-value=0.05 Score=47.33 Aligned_cols=109 Identities=13% Similarity=0.098 Sum_probs=76.0
Q ss_pred cCCCCCeeeccCCce--EEEEEcCceeEEEEEEEEecCCCCCCCCCCCCCCcEEEEEEEecCCCCCceeEEEEEEcCCCC
Q psy13339 122 GLLPGDCWAFQGAIG--CLVLKLSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGP 199 (365)
Q Consensus 122 ~~~pG~CW~f~Gs~G--~L~I~Ls~~I~~~~vsieHi~~~~s~~~~~~SAPr~f~V~g~~~~~~~~~~~Lg~f~Yd~~g~ 199 (365)
+.++...|-..|+.| .+.|++.+.+.+..+.+.=-+ -|-+=.|..+.|.|=.+..+- ..+...+.+.+-.
T Consensus 21 D~~~~TYWQSDG~q~pH~I~i~f~~~v~i~~l~i~v~~------~DeSYtPs~I~I~~G~~~~dL--~e~~~v~l~~~~~ 92 (131)
T cd08667 21 DGETSTYWQSDGSARSHWIRLKMKPDVVLRHLSIAVAA------TDQSYMPQQVTVSVGRSASSL--QEVRDVHIPSNVT 92 (131)
T ss_pred cCCCCccCccCCCCCCeEEEEEecCCeEEEEEEEEEcC------CCCCcCCcEEEEEecCCHhhh--eeeEEEEcCCCCc
Confidence 556778999999753 799999999999998887542 145569999999874433221 2344444432212
Q ss_pred ceeEEEecCCCcceeEEEEEEeecCCCCCCceEEEEEEee
Q psy13339 200 TLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHG 239 (365)
Q Consensus 200 ~~Q~F~v~~~~~~~~~V~lri~SN~G~~~yTClYR~RVhG 239 (365)
+-..+.... ...+-.|++.|++||-|..-|-+-.+||+|
T Consensus 93 Gwv~l~~~~-~~~~~~iqI~I~~nhqnG~DthIRgiki~G 131 (131)
T cd08667 93 GYVTLLENA-NISYLVVQINIKRCHSDGCDTRIHGLKTIG 131 (131)
T ss_pred eeEEEEcCC-ceEEEEEEEEeHHhccCCccceeeEEEEcC
Confidence 223332111 445778999999999999999999999998
No 12
>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination. This family contains the single domain protein, APC10, a subunit of the anaphase-promoting complex (APC), as well as the DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC, a multi-protein complex (or cyclosome), is a cell cycle-regulated, E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. APC10-like DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included in this hierarchy. CUL7 is a member of the Cullin-RING ligase family and f
Probab=96.48 E-value=0.059 Score=46.80 Aligned_cols=107 Identities=12% Similarity=0.054 Sum_probs=76.8
Q ss_pred cCCCCCeeeccCCce-E-EEEEcCceeEEEEEEEEecCCCCCCCCCCCCCCcEEEEEEEecCCCCCceeEEEEEEcCCCC
Q psy13339 122 GLLPGDCWAFQGAIG-C-LVLKLSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGP 199 (365)
Q Consensus 122 ~~~pG~CW~f~Gs~G-~-L~I~Ls~~I~~~~vsieHi~~~~s~~~~~~SAPr~f~V~g~~~~~~~~~~~Lg~f~Yd~~g~ 199 (365)
+.++..+|...|+.| + +.+.+.+.+.+..+.+.=-+. |-+=.|+.+.|.|=.+..+ -..+...+.+.. .
T Consensus 21 D~~~~tyWQSdG~qphh~i~l~f~k~v~i~~l~i~~~~~------DeSYtP~~I~V~~G~~~~d--L~e~~~v~l~~p-~ 91 (129)
T cd08159 21 DGNYDTYWQSDGSQGSHWIRLFMKKDVLIRVLAIFVDMA------DSSYMPSLVVVYGGHSPSD--LRELKDVNIRPS-N 91 (129)
T ss_pred CCCCCccCCCCCCCCCEEEEEEEcCCcEEEEEEEEecCC------CCCcCCcEEEEEecCCHHH--hheeEEEEecCC-C
Confidence 456779999999999 3 889999999999999886541 4556899999987655332 234555555554 2
Q ss_pred ceeEEEecCCCcceeEEEEEEeecCCCCCCceEEEEEEe
Q psy13339 200 TLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVH 238 (365)
Q Consensus 200 ~~Q~F~v~~~~~~~~~V~lri~SN~G~~~yTClYR~RVh 238 (365)
+-.... .+....+..|++.|++||-|..-|-+-.+||+
T Consensus 92 Gwv~i~-~~~~~~~~~iqI~I~~nhqnG~DthiRgikI~ 129 (129)
T cd08159 92 GWVALL-EDDTLKCPYIEIRIKRCRSDGIDTRIRGLRLL 129 (129)
T ss_pred ceEEEE-cCCcEEEEEEEEEEHHhccCCccceeeEEEeC
Confidence 222221 11134578999999999999999988888875
No 13
>PRK13797 putative bifunctional allantoicase/OHCU decarboxylase; Provisional
Probab=96.08 E-value=1.1 Score=47.47 Aligned_cols=238 Identities=13% Similarity=0.179 Sum_probs=132.2
Q ss_pred cccceeeeccCCceeeccccCcccCCCCceeeecccccccccCccc---cccccCCCCCeeeccCCce-----EEEEEcC
Q psy13339 72 SWLGHILRRDCGSVIDIRCTETYTLKDPYYVLFGYALWRRDSSPRK---AIQPGLLPGDCWAFQGAIG-----CLVLKLS 143 (365)
Q Consensus 72 ~w~dhAlr~~Ga~vv~~~tS~ty~~~~~~~~~~g~~~~~~~~~P~~---aL~p~~~pG~CW~f~Gs~G-----~L~I~Ls 143 (365)
+.+|-|....|++|+.. +-+-|.....++ .+.+|.. ...+.-.-++=|-....+. .+.|+|+
T Consensus 9 ~~~dLa~~~~Gg~v~~~-sD~~Fa~~~nll---------~p~~~~~~~~~f~~~G~~~DGWETrR~R~~~g~DW~iirLg 78 (516)
T PRK13797 9 NLVDLAAARFGGTVVAV-NDEFFAFAERML---------LAEPPVVRPGVFTERGQWTDGWETRRRRDLPGADWAIVRLG 78 (516)
T ss_pred chhhhhhhhcCCEEEEE-ccchhcCHHhcC---------CCCCCccccccccccCccccCccccccCCCCCCCEEEEEeC
Confidence 45788999999999962 223343332221 1112210 0001111233343333221 4689999
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCCCcEEEEEEEecCCCCCceeEE----EEEEc-----CCCCceeEEEecCCCc-ce
Q psy13339 144 HRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDENPTLLG----EFMYD-----SEGPTLQYFEAKMVAD-TF 213 (365)
Q Consensus 144 ~~I~~~~vsieHi~~~~s~~~~~~SAPr~f~V~g~~~~~~~~~~~Lg----~f~Yd-----~~g~~~Q~F~v~~~~~-~~ 213 (365)
.|-+|..|.|+=.. -....|-.++|-|+.-+.......+. .|+-= ..+.....|.+..... ++
T Consensus 79 ~~g~i~~v~vDTa~-------F~GN~p~~~siea~~~~~~~~~~~~~~~~~~W~~ll~~~~l~~~~~h~f~~~~~~~~~~ 151 (516)
T PRK13797 79 APGIAHAVTVDTTH-------FTGNAPEAVEIHGATLAGYPSAEDVADDSVHWVELVPRTPIAADAVNVLPVASSGRLRI 151 (516)
T ss_pred CCcEEEEEEEeccc-------cCCCCCCeEEEEEEecCCCCChhhhcccCCCCcEeeccccCCCCceeeEEcCCCCccee
Confidence 99999999998553 33457888898887643211000000 12111 1235567788765322 35
Q ss_pred eEEEEEEeecCCCCCCceEEEEEEeeeeCCCCCcccccccccccccccccceeeeccCCCCccccccccccceeeeeccC
Q psy13339 214 DMVELKILSNHGNIEYTCLYRFRVHGNLAPSPSPVHTYNRFSSANHNTLHHMTSSKYNPSGTEEEKSNRSVALTWVMFQS 293 (365)
Q Consensus 214 ~~V~lri~SN~G~~~yTClYR~RVhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 293 (365)
.+|+|.+-=--| +-||||||+..+++..+.. ..+ .|. ...+|+.++ -+|...-....|+| ....+
T Consensus 152 THvRlni~PDGG------iaRlRv~G~~~~~~~~~~~-~~~-dLa-~~~nGg~v~--~~sD~~fg~~~nli----~pg~~ 216 (516)
T PRK13797 152 THLRLTIHPDGG------VARLRVHGTVVPDPRLLDR-VTS-DLA-AAYLGGVVV--AASDMHYGDRHNLN----ASGDA 216 (516)
T ss_pred eEEEEEEecCCC------eeEEEEeccccCCcccccc-ccc-chh-hhccCCEEE--EecccccCCHHHcc----CCCCc
Confidence 999999988777 7899999999887663321 111 000 125788887 44442222223322 11111
Q ss_pred CcCC--------CCCCCeeeeeCCeeEEEEEecceeEeeEEEEeecCCCCCCCCCCCCCCceeEEEEeecC
Q psy13339 294 HRAG--------KMRTNGMAFQGAIGCLVLKLSHRIQVTRFSMEHIPKTLTPNGIIDSAPKKFAVWVSEHS 356 (365)
Q Consensus 294 p~~~--------~~pg~cw~f~g~~g~~~i~l~~~i~~~~~tleHi~~~~~~~~~~~sapk~f~v~g~~~~ 356 (365)
.... +.||+=| ++|+|..|..|..|.|+= +. -....|..++|.|..-+
T Consensus 217 ~~mgDGWETrRrR~pg~Dw--------~iv~Lg~~G~I~~v~vDT-----~~--FkGN~P~~~si~a~~~~ 272 (516)
T PRK13797 217 RAMGEGWETRRRRGPGHDW--------AVVRLATQGTIVRAEVDT-----RH--FRGNAPRAVALWAADAP 272 (516)
T ss_pred ccccccccccccCCCCCCE--------EEEEeCCCCEEEEEEEeC-----Cc--cCCCCCCeEEEEEEecC
Confidence 0000 4555444 689999999999998873 22 34568999999987543
No 14
>cd08365 APC10-like1 APC10-like DOC1 domains of E3 ubiquitin ligases that mediate substrate ubiquitination. This model represens the APC10-like DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. APC10/DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included here. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling a SCF-ROC1-like E3 ubiquitin ligase complex consisting of Skp1, CUL7, Fbx29 F-box protein, and ROC1 (RING-box protein 1) and promotes ubiquitination. CUL7 is a multi-domain protein with a C-terminal cullin domain that binds ROC1 and a centrally positioned APC10/DOC1 domain. HECTD3 contains a C-te
Probab=95.81 E-value=0.23 Score=43.27 Aligned_cols=106 Identities=16% Similarity=0.139 Sum_probs=74.4
Q ss_pred cCCCCCeeeccCCce--EEEEEcCceeEEEEEEEEecCCCCCCCCCCCCCCcEEEEEEEecCCCCCceeEEEEEEcCCCC
Q psy13339 122 GLLPGDCWAFQGAIG--CLVLKLSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGP 199 (365)
Q Consensus 122 ~~~pG~CW~f~Gs~G--~L~I~Ls~~I~~~~vsieHi~~~~s~~~~~~SAPr~f~V~g~~~~~~~~~~~Lg~f~Yd~~g~ 199 (365)
+..+..+|...|+.| .+.|++.+.+.+..+.+.=-+ -|-+-.|+.+.|.|=.+..+- ..+...+.+...
T Consensus 22 D~~~~tyWQSDG~q~pH~I~i~f~k~v~i~~l~l~vd~------~DeSYtP~~I~V~~G~~~~dL--~e~~~v~v~~~~- 92 (131)
T cd08365 22 DGNTSTYWQSDGSQGSHWIRLKMKPDVLVRHLSLAVDA------TDSSYMPQRVVVAGGRSASNL--QELRDVNIPPSV- 92 (131)
T ss_pred cCCCCceEccCCCCCCEEEEEEEcCCcEEEEEEEEecC------CCCCCCCcEEEEEecCCHHHh--eeEEEEEccCCC-
Confidence 445678999999986 799999999999999988643 144669999999875543321 334444444331
Q ss_pred ceeEEEecCC-CcceeEEEEEEeecCCCCCCceEEEEEE
Q psy13339 200 TLQYFEAKMV-ADTFDMVELKILSNHGNIEYTCLYRFRV 237 (365)
Q Consensus 200 ~~Q~F~v~~~-~~~~~~V~lri~SN~G~~~yTClYR~RV 237 (365)
.....+.++ ......|+++|++||-|..-|-+-.+||
T Consensus 93 -~g~v~ll~~~~~~~~~iqI~I~~nhqnG~DthiRgikI 130 (131)
T cd08365 93 -TGYVTLLEDATISQPYIEIRIKRCRSDGIDTRIHGLRI 130 (131)
T ss_pred -ceeEEEccCCceeeEEEEEEEHHHccCCccceeeEEEe
Confidence 122223333 4457899999999999988887777776
No 15
>cd08665 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in CUL7, a subunit of the SCF-ROC1-like E3 Ubiquitin (Ub) ligase complex, which mediates substrate ubiquitination (or ubiquitylation), and is a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling the SCF-ROC1-like E3 Ub ligase complex consisting of the adapter protein Skp1, CUL7, the WD40 repeat-containing F-box Fbw8 (also known as Fbx29), and ROC1 (RING-box protein 1). CUL7 is a large protein with a C-terminal cullin domain that binds ROC1 and additional domains, including an APC10/DOC1 domain. While the Fbw8 protein is responsible for substrate protein recognition, the ROC1 RING domain recruits an Ub-charged E2 Ub-conjugating enzyme for substrate ubiqui
Probab=95.67 E-value=0.25 Score=43.05 Aligned_cols=109 Identities=12% Similarity=0.150 Sum_probs=73.2
Q ss_pred cCCCCCeeeccCCce--EEEEEcCceeEEEEEEEEecCCCCCCCCCCCCCCcEEEEEEEecCCCCCceeEEEEEEcCCCC
Q psy13339 122 GLLPGDCWAFQGAIG--CLVLKLSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGP 199 (365)
Q Consensus 122 ~~~pG~CW~f~Gs~G--~L~I~Ls~~I~~~~vsieHi~~~~s~~~~~~SAPr~f~V~g~~~~~~~~~~~Lg~f~Yd~~g~ 199 (365)
+.++..+|-..|+.| .+.|+|.+.+.+..++|.=-+ -|-+-.|..++|.|=....+- ...+..-+.+....
T Consensus 21 D~~~~tyWQSdG~q~pH~I~i~f~k~v~I~~l~i~v~~------~DeSYtPs~I~V~~G~~~~dL-~~e~~~V~~~~~~g 93 (131)
T cd08665 21 DGNPKTYWESNGSTGSHYINIHMHRGVVIRQLYMLVAS------EDSSYMPARVVVLGGDSPSCI-TTELNAVNVSPTAS 93 (131)
T ss_pred cCCCCceEccCCCCCCeEEEEEECCCcEEEEEEEEecC------CCCCcCCeeEEEEecCCHHHh-hheeEEEEccCCcc
Confidence 556778999999754 799999999999999988632 155668999999875443321 01233333333211
Q ss_pred ceeEEEecCCCcceeEEEEEEeecCCCCCCceEEEEEEee
Q psy13339 200 TLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHG 239 (365)
Q Consensus 200 ~~Q~F~v~~~~~~~~~V~lri~SN~G~~~yTClYR~RVhG 239 (365)
- -.. +.......-.|++.|++||-|..-|=+-.+||+|
T Consensus 94 ~-v~l-l~~~~~~~~~iqI~I~~nhqnG~DthIRgikI~G 131 (131)
T cd08665 94 R-VVL-LENMTRFWPIIQIRIKRCQQGGIDTRVRGLEILG 131 (131)
T ss_pred e-EEE-cccCcccceEEEEEEhhhcccCccceeeEEEecC
Confidence 1 111 2221122248999999999999999999999998
No 16
>PF03256 APC10: Anaphase-promoting complex, subunit 10 (APC10); InterPro: IPR004939 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. One of the subunits of the APC that is required for ubiquitination activity is APC10, a one-domain protein homologous to a sequence element, termed the DOC domain, found in several hypothetical proteins that may also mediate ubiquitination reactions, because they contain combinations of either RING finger (see PDOC00449 from PROSITEDOC), cullin (see PDOC00967 from PROSITEDOC) or HECT (see PDOC50237 from PROSITEDOC) domains [, , ]. The DOC domain consists of a beta-sandwich, in which a five-stranded antiparallel beta-sheet is packed on top of a three stranded antiparallel beta-sheet, exhibiting a 'jellyroll' fold [, ]. Proteins known to contain a DOC domain include: Eucaryotic Doc1/Apc10. Mammalian protein associated with the transcription factor Myc (PAM). Mouse runty-jerky-sterile (RJS) protein. Human HERC2, the ortholog of RJS. ; PDB: 1GQP_B 1JHJ_A.
Probab=95.63 E-value=0.084 Score=48.85 Aligned_cols=115 Identities=15% Similarity=0.113 Sum_probs=73.5
Q ss_pred ccCCCCCeeeccCCce-EEEEEcCceeEEEEEEEEecCCCCCCCCCCCCCCcEEEEEEEecCCCCCceeEEEEEEcCCCC
Q psy13339 121 PGLLPGDCWAFQGAIG-CLVLKLSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGP 199 (365)
Q Consensus 121 p~~~pG~CW~f~Gs~G-~L~I~Ls~~I~~~~vsieHi~~~~s~~~~~~SAPr~f~V~g~~~~~~~~~~~Lg~f~Yd~~g~ 199 (365)
.+.++...|-..|+.+ .|.|.+.+.+.|..|.+.--.+. |-+=.|+.+.|.|=....+- ..+...+.+.. .
T Consensus 52 rD~~~~TyWQSDG~qpH~I~i~f~k~v~I~~l~iyvd~~~-----DeSYtPs~I~V~aG~~~~dl--~e~~~v~l~~p-~ 123 (193)
T PF03256_consen 52 RDGSTETYWQSDGSQPHWITIQFHKRVIISSLSIYVDYKQ-----DESYTPSKISVRAGNSPHDL--QEVKTVELEEP-N 123 (193)
T ss_dssp HSS-TT--EE--SSSSEEEEEEEEEEEEE-EEEEEEEHHH-----HGGGSEEEEEEEEESSTTT---EEEEEEEECC--E
T ss_pred eCCChhHhhccCCCCCEEEEEEEcCCcEEEEEEEEEccCc-----CCCCCceEEEEEEeCCcCce--EEEEEEEecCC-C
Confidence 3567788999999876 79999999999999998654211 33448999999976655432 45555555542 2
Q ss_pred ceeEEEecCC---CcceeEEEEEEeecCCCCCCceEEEEEEeeeeCC
Q psy13339 200 TLQYFEAKMV---ADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAP 243 (365)
Q Consensus 200 ~~Q~F~v~~~---~~~~~~V~lri~SN~G~~~yTClYR~RVhG~~~~ 243 (365)
+-..+.+... ...+..|++.|++||-+..-|.+-.+||+|-...
T Consensus 124 GWv~i~l~~~~~~~~r~~~iqI~I~~nhq~G~DthiR~iki~gp~~~ 170 (193)
T PF03256_consen 124 GWVHIPLLDNRGNPLRCFFIQIAILSNHQNGKDTHIRGIKIYGPRPS 170 (193)
T ss_dssp EEEEEE-BSTTTSBEEEEEEEEEEEEECCC-SS-EESEEEEEEE---
T ss_pred ccEEEEeCCCCCCcEEEEEEEEEEEecccCCCCCceeeEEEECCCCc
Confidence 3344555443 2235679999999999999999999999997654
No 17
>PF06201 PITH: PITH domain; InterPro: IPR010400 The full-length, Txnl1, protein which is a probable component of the 32 kDa 26S proteasome, uses its C-terminal, PITH, domain to associate specifically with the 26S proteasome. PITH derives from proteasome-interacting thioredoxin domain which this entry represents [].; PDB: 1XOY_A 1WWY_A.
Probab=95.26 E-value=0.16 Score=45.14 Aligned_cols=88 Identities=17% Similarity=0.255 Sum_probs=55.0
Q ss_pred EEEEEcCceeEEEEEEEEecCCCCCCCCCCCCCCcEEEEEEEecCCCCCceeEEEEEEcC--CCCceeEEEecC------
Q psy13339 137 CLVLKLSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDS--EGPTLQYFEAKM------ 208 (365)
Q Consensus 137 ~L~I~Ls~~I~~~~vsieHi~~~~s~~~~~~SAPr~f~V~g~~~~~~~~~~~Lg~f~Yd~--~g~~~Q~F~v~~------ 208 (365)
-+-|-+.++|.+.+|.|-=.+ +-++|||.+.||.-.... .-|+. +..+.|++.+.+
T Consensus 48 ii~IpF~~~Vkl~si~i~~~~-------~~~~~P~~iKlf~N~~~~---------ldF~~~~~~~p~q~~~l~~~~~~~~ 111 (152)
T PF06201_consen 48 IIHIPFTQPVKLHSIIIKGPP-------DDDSAPKTIKLFINQRPN---------LDFDDAESIKPTQELELTEEDSDGG 111 (152)
T ss_dssp EEEEEEEEEEEEEEEEEE----------STTTSEEEEEEEES-SS------------CCHHCCS--SCEEE--TTTCCCT
T ss_pred EEEEccCCceEEEEEEEEecc-------CCCCCCeEEEEEECCCCC---------cCccccccCCCCceEEcCccccCCc
Confidence 456677888999888887432 456899999999862211 01111 124555555544
Q ss_pred -------C-CcceeEEEEEEeecCCCCCCceEEEEEEeee
Q psy13339 209 -------V-ADTFDMVELKILSNHGNIEYTCLYRFRVHGN 240 (365)
Q Consensus 209 -------~-~~~~~~V~lri~SN~G~~~yTClYR~RVhG~ 240 (365)
. -.-++.+.+-|.+|+|..+.|-||++++.|+
T Consensus 112 ~~~~Lk~~KFqnV~sLtif~~~n~g~~~~T~I~~i~l~G~ 151 (152)
T PF06201_consen 112 VEYPLKFVKFQNVNSLTIFFEDNQGGDDVTRIYYIGLRGE 151 (152)
T ss_dssp --EE--TTT-TTEEEEEEEEEEETT--SS-EESEEEEEEE
T ss_pred eEeeeeeeccCCccEEEEEEeCCcCCCccEEEEEEEEEee
Confidence 2 2347889999999999669999999999996
No 18
>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in HECTD3, a HECT (Homologous to the E6-AP Carboxyl Terminus) E3 ubiquitin ligase protein. HECT E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), and are a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. They also regulate the trafficking of many receptors, channels, transporters and viral proteins. HECTD3 (HECT domain-containing protein3) contains a C-terminal HECT domain with the active site for ubiquitin transfer onto substrates, and an N-terminal APC10/DOC1 domain, which is responsible for substrate recognition and binding. HECTD3 specifically recognizes the Trio-binding protein, Tara (Trio-associated repeat on actin), implicated in regulating actin cytoskeletal, cell motility and cell growth. Tara also binds to TRF1 and may participate i
Probab=94.63 E-value=1.1 Score=39.28 Aligned_cols=105 Identities=13% Similarity=0.163 Sum_probs=70.2
Q ss_pred cCCCCCeeeccCCce--EEEEEcCceeEEEEEEEEecCCCCCCCCCCCCCCcEEEEEEEecCCCCCceeEEEEEEcCCCC
Q psy13339 122 GLLPGDCWAFQGAIG--CLVLKLSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGP 199 (365)
Q Consensus 122 ~~~pG~CW~f~Gs~G--~L~I~Ls~~I~~~~vsieHi~~~~s~~~~~~SAPr~f~V~g~~~~~~~~~~~Lg~f~Yd~~g~ 199 (365)
+.++...|...|+.| .+.|++.+.+.+..+.+.=-+ -|-+-.|..+.|.|=. ..+ -..+...+.+..
T Consensus 26 D~~~~tyWQSdG~qgpH~I~l~f~~~v~i~~l~i~v~~------~DeSYtP~~I~V~~G~-~~d--L~ei~~V~i~~~-- 94 (134)
T cd08666 26 DGDPDTYWESDGSQGQHWIRLHMKKGTIIKKLLLTVDA------TDDNYMPKRVAVYGGE-GDN--LKKLNDVSIDET-- 94 (134)
T ss_pred cCCCCccEecCCCCCCeEEEEEECCCcEeeEEEEEecC------CCCCcCCcEEEEEecC-ccC--hhheEEEEeCCC--
Confidence 456778999999986 799999999999999986432 1556699999998655 222 233444444432
Q ss_pred ceeEEEecCC-CcceeEEEEEEeecCCCCCCceEEEEEE
Q psy13339 200 TLQYFEAKMV-ADTFDMVELKILSNHGNIEYTCLYRFRV 237 (365)
Q Consensus 200 ~~Q~F~v~~~-~~~~~~V~lri~SN~G~~~yTClYR~RV 237 (365)
......+.+. ......|+++|++||-|..-|=+-.++|
T Consensus 95 ~~g~V~il~~~~~~~~~iqI~I~~nhqnG~DthIRgiKI 133 (134)
T cd08666 95 LIGDVCILEDMTTHLPVIEIRIKECKDEGIDVRIRGIKI 133 (134)
T ss_pred CCCeEEEecCCceEeEEEEEEeHHhccCCccceeeEEEe
Confidence 1122222222 3334579999999999987776666554
No 19
>PRK13257 allantoicase; Provisional
Probab=93.69 E-value=1.5 Score=43.84 Aligned_cols=113 Identities=21% Similarity=0.303 Sum_probs=76.2
Q ss_pred CccccccccC--CCCCeeeccCCc----eEEEEEcCceeEEEEEEEEecCCCCCCCCCCCCCCcEEEEEEEecCCCCC--
Q psy13339 114 SPRKAIQPGL--LPGDCWAFQGAI----GCLVLKLSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDEN-- 185 (365)
Q Consensus 114 ~P~~aL~p~~--~pG~CW~f~Gs~----G~L~I~Ls~~I~~~~vsieHi~~~~s~~~~~~SAPr~f~V~g~~~~~~~~-- 185 (365)
+|+.+|.|.. .-|+=|.....+ =.+.|+|+.+-.|..|.|+=.. -....|..++|.|+.-+..+.
T Consensus 205 ~~~Nll~Pg~~~~mgDGWETrRrR~pG~DW~iikLg~~G~I~~ieVDT~~-------FkGN~P~~~si~~~~~~~~~~~~ 277 (336)
T PRK13257 205 SPSNLLLPGRGVNMGDGWETRRRREPGNDWVIVALAAPGVIRKIEVDTAH-------FKGNFPDRCSLQAAYVEGGTDSS 277 (336)
T ss_pred CHHHeeCCCcccccccccccccccCCCCCEEEEEcCCCCEEEEEEEeCcc-------cCCCCCCeEEEEEEecCCCcccc
Confidence 4555555543 346667766544 3689999999999999998543 445689999999986432221
Q ss_pred -------c-eeEEEEEEcCCCCceeEEE--ecCCCcceeEEEEEEeecCCCCCCceEEEEEEeeeeC
Q psy13339 186 -------P-TLLGEFMYDSEGPTLQYFE--AKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLA 242 (365)
Q Consensus 186 -------~-~~Lg~f~Yd~~g~~~Q~F~--v~~~~~~~~~V~lri~SN~G~~~yTClYR~RVhG~~~ 242 (365)
+ .+|+.-.-. ....+.|. +.. ..++..|+|.|-=--| +-||||||...
T Consensus 278 ~~~~~~~W~~Llp~tkl~--pd~~h~F~~~~~~-~~~~THvRl~I~PDGG------vsRlRv~G~~~ 335 (336)
T PRK13257 278 LITQSMFWPELLPEQKLQ--MDTRHRFEAELAA-LGPVTHVRLNIFPDGG------VSRLRLWGKLA 335 (336)
T ss_pred cccccCcCeEcccccccC--CCcEeeecccccC-CCceEEEEEEEECCCC------ceeEEeeeEec
Confidence 1 122222211 23466776 544 5679999999998888 68999999864
No 20
>PRK13797 putative bifunctional allantoicase/OHCU decarboxylase; Provisional
Probab=92.50 E-value=2.1 Score=45.32 Aligned_cols=125 Identities=18% Similarity=0.253 Sum_probs=81.9
Q ss_pred CccccccccC--CCCCeeeccCCce----EEEEEcCceeEEEEEEEEecCCCCCCCCCCCCCCcEEEEEEEecCCCC---
Q psy13339 114 SPRKAIQPGL--LPGDCWAFQGAIG----CLVLKLSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDE--- 184 (365)
Q Consensus 114 ~P~~aL~p~~--~pG~CW~f~Gs~G----~L~I~Ls~~I~~~~vsieHi~~~~s~~~~~~SAPr~f~V~g~~~~~~~--- 184 (365)
+|+.+|.|.. .-|+=|.....++ .+.|+|+.|-.|..|.|+=.. -....|-.++|.|+.-+...
T Consensus 206 ~~~nli~pg~~~~mgDGWETrRrR~pg~Dw~iv~Lg~~G~I~~v~vDT~~-------FkGN~P~~~si~a~~~~~~~~~~ 278 (516)
T PRK13797 206 DRHNLNASGDARAMGEGWETRRRRGPGHDWAVVRLATQGTIVRAEVDTRH-------FRGNAPRAVALWAADAPDLLDPD 278 (516)
T ss_pred CHHHccCCCCcccccccccccccCCCCCCEEEEEeCCCCEEEEEEEeCCc-------cCCCCCCeEEEEEEecCCCCchh
Confidence 4455555433 3467777665432 689999999999999998543 34568999999998643211
Q ss_pred ------Cce-eEEEEEEcCCCCceeEEEecCCCcceeEEEEEEeecCCCCCCceEEEEEEeeeeCCCCCcccccccc
Q psy13339 185 ------NPT-LLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPSPSPVHTYNRF 254 (365)
Q Consensus 185 ------~~~-~Lg~f~Yd~~g~~~Q~F~v~~~~~~~~~V~lri~SN~G~~~yTClYR~RVhG~~~~~~~~~~~~~~~ 254 (365)
.++ +|..-.- .+.....|.+.. ...+.+|+|.|-=--| +-||||||.+.+....--+|.+|
T Consensus 279 ~~~~~~~W~~llp~~~l--~~~~~h~f~~~~-~~~~THvrl~i~PDGG------vsRlRv~G~~~~~~~~~l~L~~~ 346 (516)
T PRK13797 279 DLAAITEWRPLLPRTRV--QPNTRHLFDLEV-PVQATHVRVDAIPDGG------LARLRLTGAPTRSGREALAMRWF 346 (516)
T ss_pred hhccCCCceEcCCCccc--CCCceeeeecCC-CCCceEEEEEEECCCC------eeeEEEeeeeccchhhhhchhhc
Confidence 121 2222111 124577787655 4568999999988877 78999999998665333344444
No 21
>PF03561 Allantoicase: Allantoicase repeat; InterPro: IPR015908 Allantoicase (also known as allantoate amidinohydrolase) is involved in purine degradation, facilitating the utilization of purines as secondary nitrogen sources under nitrogen-limiting conditions. While purine degradation converges to uric acid in all vertebrates, its further degradation varies from species to species. Uric acid is excreted by birds, reptiles, and some mammals that do not have a functional uricase gene, whereas other mammals produce allantoin. Amphibians and microorganisms produce ammonia and carbon dioxide using the uricolytic pathway. Allantoicase performs the second step in this pathway catalyzing the conversion of allantoate into ureidoglycolate and urea. allantoate + H(2)0 = (S)-ureidoglycolate + urea The structure of allantoicase is best described as being composed of two repeats (the allantoicase repeats: AR1 and AR2), which are connected by a flexible linker. The crystal structure, resolved at 2.4A resolution, reveals that AR1 has a very similar fold to AR2, both repeats being jelly-roll motifs, composed of four-stranded and five-stranded antiparallel beta-sheets []. Each jelly-roll motif has two conserved surface patches that probably constitute the active site []. The mammalian proteins matched by this entry are thought to be non-functional as mammals do not appear to possess allantoicase activity [].; GO: 0004037 allantoicase activity; PDB: 1O59_A 1SG3_A.
Probab=92.29 E-value=3.7 Score=36.63 Aligned_cols=100 Identities=20% Similarity=0.233 Sum_probs=58.4
Q ss_pred CCeeeccCCc----eEEEEEcCceeEEEEEEEEecCCCCCCCCCCCCCCcEEEEEEEecCCCC----------CceeEEE
Q psy13339 126 GDCWAFQGAI----GCLVLKLSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDE----------NPTLLGE 191 (365)
Q Consensus 126 G~CW~f~Gs~----G~L~I~Ls~~I~~~~vsieHi~~~~s~~~~~~SAPr~f~V~g~~~~~~~----------~~~~Lg~ 191 (365)
++=|.....+ =.+.|+|+.|-.|..|.|+=.. -....|-.++|.|+...... .+..|-.
T Consensus 38 ~DGWETrRrr~~g~DW~IikLg~~G~I~~i~IDT~~-------F~GN~P~~~sv~~~~~~~~~~~~~~~~~~~~W~~llp 110 (152)
T PF03561_consen 38 MDGWETRRRRDPGHDWAIIKLGAPGVIRGIEIDTAH-------FKGNYPPSVSVEGAYLPDDDDPEIIELDSEEWVELLP 110 (152)
T ss_dssp GCSEE--SS-STT-EEEEEE-SSSCEEEEEEEE-TT--------SSSB-SEEEEEEE--SS----S---TT-TTEEEEEE
T ss_pred ccceeeccccCCCCCEEEEECCCCCEEEEEEEeccc-------ccCCCCCEEEEEEEEcCCCcccccccccCCCceEeec
Confidence 4455555433 2678999999999999999543 34568999999998754321 2333322
Q ss_pred EEEcCCCCceeEEEecCC-CcceeEEEEEEeecCCCCCCceEEEEEEee
Q psy13339 192 FMYDSEGPTLQYFEAKMV-ADTFDMVELKILSNHGNIEYTCLYRFRVHG 239 (365)
Q Consensus 192 f~Yd~~g~~~Q~F~v~~~-~~~~~~V~lri~SN~G~~~yTClYR~RVhG 239 (365)
.+-- .....+.|.+... ..++.+|+|.+----| +-||||||
T Consensus 111 ~~~l-~~~~~h~f~~~~~~~~~~THvRl~i~PDGG------IaRlRv~G 152 (152)
T PF03561_consen 111 RTKL-GPDKRHYFKLEINNEKPFTHVRLNIYPDGG------IARLRVYG 152 (152)
T ss_dssp EEE---TT-EEEEE-TECECS-BSEEEEEEESS-E------ESEEEEEE
T ss_pred ceEc-CCCcccEeccccCCCCceeEEEEEEeCCCC------EEEEEEcC
Confidence 2211 1346778875322 6789999999986554 88999998
No 22
>TIGR02961 allantoicase allantoicase. A different but similarly named enzyme, allantoate amidohydrolase (EC 3.5.3.9), simultaneously breaks down the urea to ammonia and carbon dioxide.
Probab=90.74 E-value=4.5 Score=40.38 Aligned_cols=135 Identities=19% Similarity=0.280 Sum_probs=83.8
Q ss_pred ccceeeeccCCceeeccccCcccCCCCceeeecccccccccCccccccccC--CCCCeeeccCCc----eEEEEEcCcee
Q psy13339 73 WLGHILRRDCGSVIDIRCTETYTLKDPYYVLFGYALWRRDSSPRKAIQPGL--LPGDCWAFQGAI----GCLVLKLSHRI 146 (365)
Q Consensus 73 w~dhAlr~~Ga~vv~~~tS~ty~~~~~~~~~~g~~~~~~~~~P~~aL~p~~--~pG~CW~f~Gs~----G~L~I~Ls~~I 146 (365)
.+|-|....|++++. +|.-+- .+|+.+|.|.. .-|+=|.....+ =.+.|+|+.|-
T Consensus 172 ~~DLaa~~nGg~vl~--~sD~~f-----------------g~~~Nli~pg~~~~mgDGWETrRrR~pG~DW~IvkLg~~G 232 (322)
T TIGR02961 172 TVDLAALENGGVVVA--CSDAHF-----------------GHPDNLIGPGRGRNMGDGWETARRRDPGNDWAIVRLGAPG 232 (322)
T ss_pred ccceeecccCCEEEE--eccccc-----------------CCHHHccCCCcccccccCcceeeccCCCCCEEEEEcCCCC
Confidence 466666666666663 333221 23444554432 335566665433 26789999999
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCCcEEEEEEEecCCCCCcee-EE--EEEEc-----CCCCceeEEE--ecCCCcceeEE
Q psy13339 147 QVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDENPTL-LG--EFMYD-----SEGPTLQYFE--AKMVADTFDMV 216 (365)
Q Consensus 147 ~~~~vsieHi~~~~s~~~~~~SAPr~f~V~g~~~~~~~~~~~-Lg--~f~Yd-----~~g~~~Q~F~--v~~~~~~~~~V 216 (365)
.|..|.|+=.. -....|-.++|.|+.-+..+...+ .. .|..= ..+.....|. +.. ..++..|
T Consensus 233 ~I~~i~VDT~~-------FkGN~P~~~si~a~~~~~~~~~~~~~~~~~W~~llp~t~l~~~~~h~f~~~~~~-~~~~THv 304 (322)
T TIGR02961 233 EIERIEVDTAH-------FKGNYPDSCSLQAADLEGGEDEQLITQSMFWVELLPRTKLGPDTEHVFESSLAA-SGPVTHV 304 (322)
T ss_pred eEEEEEEeCCc-------cCCCCCCeEEEEEEeCCCCCchhhhccCCCceEcccccccCCCcEeeecccccC-CCceEEE
Confidence 99999998543 345689999999986443221111 11 12221 1234567776 433 5679999
Q ss_pred EEEEeecCCCCCCceEEEEEEeee
Q psy13339 217 ELKILSNHGNIEYTCLYRFRVHGN 240 (365)
Q Consensus 217 ~lri~SN~G~~~yTClYR~RVhG~ 240 (365)
+|.|-=--| +-||||||.
T Consensus 305 RlnI~PDGG------vsRlRv~G~ 322 (322)
T TIGR02961 305 RLNIIPDGG------VSRLRLWGR 322 (322)
T ss_pred EEEEECCCC------eeeEEEeeC
Confidence 999998888 789999994
No 23
>cd08664 APC10-HERC2 APC10-like DOC1 domain present in HERC2 (HECT domain and RLD2). This model represents the APC10/DOC1 domain present in HERC2 (HECT domain and RLD2), a large multi-domain protein with three RCC1-like domains (RLDs), additional internal domains including a zinc finger ZZ-type and Cyt-b5 (Cytochrome b5-like Heme/Steroid binding) domains, and a C-terminal HECT (Homologous to the E6-AP Carboxyl Terminus) domain. The APC10/DOC1 domain of HERC2 is a homolog of the APC10 subunit and the DOC1 domain present in E3 ubiquitin ligases which mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. As suggested by structural relationships between HERC2 and other proteins such as HERC1, the proposed role for HERC2 in protein trafficking and degradation pathways is consistent with observations that mutations in HERC2 lead to neuromuscular secretory vesicle and sperm acrosome defects, other develo
Probab=90.51 E-value=6.2 Score=35.29 Aligned_cols=102 Identities=14% Similarity=0.152 Sum_probs=67.5
Q ss_pred CCCeeeccCCce--EEEEEcCceeEEEEEEEEecCCCCCCCCCCCCCCcEEEEEEEecCCCCCceeEEEEEEcCCCCcee
Q psy13339 125 PGDCWAFQGAIG--CLVLKLSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQ 202 (365)
Q Consensus 125 pG~CW~f~Gs~G--~L~I~Ls~~I~~~~vsieHi~~~~s~~~~~~SAPr~f~V~g~~~~~~~~~~~Lg~f~Yd~~g~~~Q 202 (365)
++.+|...|+.| .+.++|.+.+.+..+++.=.+ .|-+-.|..+.|.|=.+..+- ..|.....+....
T Consensus 47 ~~TYWQSdG~q~~HwI~l~~~~~v~I~~L~i~vd~------~DeSY~Ps~I~V~~G~~~~~L--~el~~V~i~~~~~--- 115 (152)
T cd08664 47 SGSYWQSSGSQGKHWIRLELHPDVLIHSLKIIVDP------ADSSYMPSLVVVSGGDSLNSL--KELKTINVNATDT--- 115 (152)
T ss_pred CCCeeccCCCCCceEEEEEECCCcEEEEEEEEecC------CCCCcCCceEEEEecCChhhh--heeEEEEcCCCCc---
Confidence 889999999987 799999999999999988653 144569999999875443221 2233333333211
Q ss_pred EEEecCC-CcceeEEEEEEeecCCCCCCceEEEEEE
Q psy13339 203 YFEAKMV-ADTFDMVELKILSNHGNIEYTCLYRFRV 237 (365)
Q Consensus 203 ~F~v~~~-~~~~~~V~lri~SN~G~~~yTClYR~RV 237 (365)
...|.+. ......|++.|++||-+..-|=+-.|+|
T Consensus 116 ~v~Ll~~~~~~~~~IqI~I~~ch~~GiDt~IrglkI 151 (152)
T cd08664 116 LVTLLQDVKEYYRYIEIAIKQCRNNGIDCKIHGLNI 151 (152)
T ss_pred eEEeccCCCeeeEEEEEEhHhhhhCCCcceeeEEEe
Confidence 1112222 2235689999999999876665555544
No 24
>KOG3437|consensus
Probab=87.69 E-value=15 Score=33.66 Aligned_cols=121 Identities=14% Similarity=0.056 Sum_probs=75.9
Q ss_pred cCccccccccCCCCCeeeccCCce-EEEEEcCceeEEEEEEEEecCCCCCCCCCCCCCCcEEEEEEEecCCCCCceeEEE
Q psy13339 113 SSPRKAIQPGLLPGDCWAFQGAIG-CLVLKLSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDENPTLLGE 191 (365)
Q Consensus 113 ~~P~~aL~p~~~pG~CW~f~Gs~G-~L~I~Ls~~I~~~~vsieHi~~~~s~~~~~~SAPr~f~V~g~~~~~~~~~~~Lg~ 191 (365)
.|++.+++. .+-.-|...|+.+ .+-|.+.+.+.|..|.|.=--+ -|-+=+|-.+.|.+-..-.+- -.+-.
T Consensus 37 ~pvd~l~Dd--n~etyWqSdG~~PH~i~I~F~K~~~I~~v~if~~f~-----~DeSYtPs~i~I~~G~g~~dl--~~~~~ 107 (184)
T KOG3437|consen 37 FPVDNLRDD--NPETYWQSDGSQPHLINIQFHKRVDIQYVVIFLDFK-----QDESYTPSKIKIRAGNGFNDL--WEIQS 107 (184)
T ss_pred CChHHhhcC--ChhHheecCCCCCeEEEEEEEeEEEEEEEEEEEEEe-----cccccCceeEEEEecCChhhe--eeeeE
Confidence 456666543 4556899999988 5789999999999999875422 144557888886543322221 11111
Q ss_pred EEEcCCCCceeEEEecCC---CcceeEEEEEEeecCCCCCCceEEEEEEeeeeCC
Q psy13339 192 FMYDSEGPTLQYFEAKMV---ADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAP 243 (365)
Q Consensus 192 f~Yd~~g~~~Q~F~v~~~---~~~~~~V~lri~SN~G~~~yTClYR~RVhG~~~~ 243 (365)
.+.+.. ++--.-++... ...+..+++.|.+||-|.+-|-+-.+|||+-...
T Consensus 108 ~el~ep-~GWv~lp~~d~~~~~lr~~~iqi~i~~NHq~GkDthvR~iri~~p~~e 161 (184)
T KOG3437|consen 108 VELVEP-KGWVHLPVLDNDDKPLRCFMIQIAILSNHQNGKDTHVRHIRIYAPSIE 161 (184)
T ss_pred EEEecC-CceEEEeeccCCCCceEEEEEEEEeecccccCccceeEEEEEeccccc
Confidence 122221 11111111111 3346789999999999999999999999987443
No 25
>PF06588 Muskelin_N: Muskelin N-terminus; InterPro: IPR010565 This entry represents the N-terminal region of muskelin and is found in conjunction with several IPR006652 from INTERPRO repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1 [].
Probab=81.52 E-value=4.5 Score=37.61 Aligned_cols=120 Identities=15% Similarity=0.128 Sum_probs=80.2
Q ss_pred Ccccccc-ccCCCCCeeeccCCc--eEEEEEcCceeEEEEEEEEecCCCCCCCCCCCCCCcEEEEEEEecCCCCCceeEE
Q psy13339 114 SPRKAIQ-PGLLPGDCWAFQGAI--GCLVLKLSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDENPTLLG 190 (365)
Q Consensus 114 ~P~~aL~-p~~~pG~CW~f~Gs~--G~L~I~Ls~~I~~~~vsieHi~~~~s~~~~~~SAPr~f~V~g~~~~~~~~~~~Lg 190 (365)
-|+-+|. ...++-+=|...... -.|+++|.+|.+|+.|+----.+. --+--|+|.|||-.++..- ..|-
T Consensus 20 ~P~NIlvd~P~dqsSRWss~~~~~~QyiiLkL~~paiV~sItFGKy~K~------HvCNlK~fkv~gG~~~~~m--~ell 91 (199)
T PF06588_consen 20 HPENILVDKPNDQSSRWSSSSNSPPQYIILKLESPAIVKSITFGKYEKP------HVCNLKKFKVYGGMDEENM--IELL 91 (199)
T ss_pred ChhheeecCCCCccccccCCCCCCCcEEEEEcCCCeEEEEEeccccccC------ccccceeeEEeccCCHHHH--HHHH
Confidence 4556664 344666668766443 489999999999999987654332 1256899999986654321 1111
Q ss_pred EEEEcCCCCceeEEEecCC-------CcceeEEEEEEeecCCCCCCceEEEEEEeeeeC
Q psy13339 191 EFMYDSEGPTLQYFEAKMV-------ADTFDMVELKILSNHGNIEYTCLYRFRVHGNLA 242 (365)
Q Consensus 191 ~f~Yd~~g~~~Q~F~v~~~-------~~~~~~V~lri~SN~G~~~yTClYR~RVhG~~~ 242 (365)
+.--..| ..--+|+|... ..|+++|++.=+.-||..-...|.-|-++|..-
T Consensus 92 ~~gLkND-~~~Etf~l~~~~~~~~~~~fP~rYIKIvPL~swGpsFNfSIWyVeL~Gi~d 149 (199)
T PF06588_consen 92 HGGLKND-SNPETFNLKHKTNNGIENYFPCRYIKIVPLQSWGPSFNFSIWYVELSGIDD 149 (199)
T ss_pred hhhccCC-CCCceEEeEEecCCcccceeeeeeeEEechhhcCCCCceEEEEEEEeccCC
Confidence 2222222 22356666533 237899999999999987778899999999863
No 26
>COG5156 DOC1 Anaphase-promoting complex (APC), subunit 10 [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones]
Probab=78.36 E-value=28 Score=31.46 Aligned_cols=116 Identities=10% Similarity=0.052 Sum_probs=72.3
Q ss_pred CccccccccCCCCCeeeccCCce-EEEEEcCceeEEEEEEEEecCCCCCCCCCCCCCCcEEEEEEEecCCCCCceeEEEE
Q psy13339 114 SPRKAIQPGLLPGDCWAFQGAIG-CLVLKLSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDENPTLLGEF 192 (365)
Q Consensus 114 ~P~~aL~p~~~pG~CW~f~Gs~G-~L~I~Ls~~I~~~~vsieHi~~~~s~~~~~~SAPr~f~V~g~~~~~~~~~~~Lg~f 192 (365)
|=+.+|+.+. ..-|...|..+ +|-|.+.+...+..|.+--. ..-|-+=+|-.+-|.+=....|- ..+...
T Consensus 42 p~r~~lddn~--dtyWqsDg~qPH~i~I~F~kr~~I~~v~lfls-----~t~DeSYtPs~i~v~aG~~~~D~--r~~~~v 112 (189)
T COG5156 42 PLRELLDDNM--DTYWQSDGVQPHSIQISFDKRRYIQSVQLFLS-----FTQDESYTPSKIGVRAGLTREDV--REISSV 112 (189)
T ss_pred cHHHHhhcch--hhhhccCCCCCceEEEEEeEEEeeeeehhhhh-----hhcccccCcceeEEeccCChhhh--eeEEEE
Confidence 3344555443 45799988776 89999999999988887643 11255668888888753332221 111111
Q ss_pred EEcCCCCceeEEEecCC----CcceeEEEEEEeecCCCCCCceEEEEEEee
Q psy13339 193 MYDSEGPTLQYFEAKMV----ADTFDMVELKILSNHGNIEYTCLYRFRVHG 239 (365)
Q Consensus 193 ~Yd~~g~~~Q~F~v~~~----~~~~~~V~lri~SN~G~~~yTClYR~RVhG 239 (365)
+-... ++--+-.+... ...+..|++.|.+||.+.+-|-+--+|++-
T Consensus 113 ev~ep-~Gwv~l~v~d~~~d~LL~c~~I~v~i~~NHq~GKDsHvR~ikiy~ 162 (189)
T COG5156 113 EVVEP-EGWVTLSVADKREDDLLKCIYILVVINSNHQEGKDSHVRHIKIYE 162 (189)
T ss_pred EEEcC-CceEEEEecccCcCCceeEEEEEEEEecCcccCcccceeeEEEec
Confidence 11111 12222222221 334789999999999999999999999884
No 27
>PF14958 DUF4506: Domain of unknown function (DUF4506)
Probab=76.30 E-value=44 Score=29.38 Aligned_cols=92 Identities=23% Similarity=0.357 Sum_probs=63.9
Q ss_pred eEEEEEcCceeEEEEEEEEecCCCCCCCCCCCCCCcEEEEE-EEecCCCCCceeEEEEEEcCC---CCceeEEEecCCCc
Q psy13339 136 GCLVLKLSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVW-GLREKYDENPTLLGEFMYDSE---GPTLQYFEAKMVAD 211 (365)
Q Consensus 136 G~L~I~Ls~~I~~~~vsieHi~~~~s~~~~~~SAPr~f~V~-g~~~~~~~~~~~Lg~f~Yd~~---g~~~Q~F~v~~~~~ 211 (365)
-.|.++++-...|.+|.|- |--|.+||+ |..+++.. +.-|++.++.+ +..+-.+.+.- ..
T Consensus 16 C~L~l~~~p~~~I~si~I~-------------SeAR~~EvY~g~~~EY~~--T~rGe~v~~~~~~~~~~lY~~~l~l-e~ 79 (138)
T PF14958_consen 16 CELYLQCDPKEEIASIGIV-------------SEARNMEVYVGQSEEYCG--TSRGELVDEDSEEENIILYKKDLKL-ES 79 (138)
T ss_pred EEEEEEECCCceEEEEEEE-------------EccCEEEEEECCCCceee--EcCcEEecCCCccccceEEEEEEEc-CC
Confidence 3588888887777777664 345789999 66566543 55577777332 23333333333 36
Q ss_pred ceeEEEEEEeecCCCCCCceEEEEEEeeeeCCCCC
Q psy13339 212 TFDMVELKILSNHGNIEYTCLYRFRVHGNLAPSPS 246 (365)
Q Consensus 212 ~~~~V~lri~SN~G~~~yTClYR~RVhG~~~~~~~ 246 (365)
+...+.|+++|= | +.-|+|-.+||..+.+.+.
T Consensus 80 ~~~~~~iK~lSl-~--~k~~vy~~~i~v~~~~~~~ 111 (138)
T PF14958_consen 80 PTSECKIKFLSL-G--EKQCVYGSKIVVHLRPVSA 111 (138)
T ss_pred CccEEEEEEEec-C--CccEEEEEEEEEEecCCCC
Confidence 789999999998 5 4699999999999876654
No 28
>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain. In the Dictyostelium discoideum (Slime mold) cell adhesion protein discoidin, a related domain, named discoidin I-like domain, DLD, or DS, has been found which shares a common C-terminal region of about 110 amino acids with the FA58C domain, but whose N-terminal 40 amino acids are much less conserved. Similar domains have been detected in other extracellular and membrane proteins [, , ] In coagulation factors V and VIII the repeated domains compose part of a larger functional domain which promotes binding to anionic phospholipids on the surface of platelets and endothelial cells []. The C-terminal domain of the second FA58C repeat (C2) of coagulation factor VIII has been shown to be responsible for phosphatidylserine-binding and essential for activity [, ]. It forms an amphipathic alpha-helix, which binds to the membrane []. FA58C contains two conserved cysteines in most proteins, which link the extremities of the domain by a disulphide bond [, , ]. A further disulphide bond is located near the C-terminal of the second FA58C domain in MFGM Q08431 from SWISSPROT []. +------------------------------------------------------------------------+ | +-+ | | | | | CxPLGxxQITASxxxxxRLxxxWxxxxWxxxxxxQGxxxxxxxxxxxxGNxxxxxxxxxxRxPxcxcLRxExGC 'C': conserved cysteine involved in a disulphide bond. 'c': cysteine involved in a disulphide bond in MFGM Q08431 from SWISSPROT. 'x': any amino acid. upper case letters: conserved residues. ; GO: 0007155 cell adhesion; PDB: 2J22_A 3CQO_C 1SDD_B 2VCA_A 2VC9_A 2VCC_A 2VCB_A 2J1E_A 2J7M_A 2J1A_A ....
Probab=70.49 E-value=15 Score=29.66 Aligned_cols=54 Identities=11% Similarity=0.146 Sum_probs=44.8
Q ss_pred CCCCCeeee--eCCeeEEEEEecceeEeeEEEEeecCCCCCCCCCCCCCCceeEEEEeecCC
Q psy13339 298 KMRTNGMAF--QGAIGCLVLKLSHRIQVTRFSMEHIPKTLTPNGIIDSAPKKFAVWVSEHSQ 357 (365)
Q Consensus 298 ~~pg~cw~f--~g~~g~~~i~l~~~i~~~~~tleHi~~~~~~~~~~~sapk~f~v~g~~~~~ 357 (365)
..++.+|.- .+....|+|.|..+..+++|.|..-...-. ..|+.|.|.+..++.
T Consensus 23 g~~~t~W~~~~~~~~~~i~idl~~~~~i~~i~i~~~~~~~~------~~~~~~~i~~s~dg~ 78 (129)
T PF00754_consen 23 GDPSTAWCSNWDDSPQWIQIDLGKPYTISGISIQFRNDGNN------GRPKSFKIEYSNDGS 78 (129)
T ss_dssp SSTTSSEEESSSSSTEEEEEEEEEEEEEEEEEEEEESSTTT------EEEEEEEEEEESSSS
T ss_pred CCCCCEEECCCCCCCceEEEEeeeeEecceeeecccccccc------eeeeeeeeeeecccc
Confidence 458899998 689999999999999999999987654311 589999999987763
No 29
>smart00231 FA58C Coagulation factor 5/8 C-terminal domain, discoidin domain. Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
Probab=55.25 E-value=1.3e+02 Score=25.40 Aligned_cols=99 Identities=12% Similarity=0.055 Sum_probs=57.3
Q ss_pred CCeeeccCC--ceEEEEEcCceeEEEEEEEEecCCCCCCCCCCCCCCcEEEEEEEecCCCCCceeE-----EEEEEcCCC
Q psy13339 126 GDCWAFQGA--IGCLVLKLSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDENPTLL-----GEFMYDSEG 198 (365)
Q Consensus 126 G~CW~f~Gs--~G~L~I~Ls~~I~~~~vsieHi~~~~s~~~~~~SAPr~f~V~g~~~~~~~~~~~L-----g~f~Yd~~g 198 (365)
+..||.... ...|.|.|.++..|+.|.+.-.. . . +.--..|.++ .++. ..+..+ +.|.-+.+.
T Consensus 33 ~~~W~~~~~~~~~wlqvDLg~~~~v~~i~~qg~~-~-~-----~~~~~~~~~~--s~dg-~~W~~~~~~~~~~f~gn~d~ 102 (139)
T smart00231 33 DGAWCPAKNSLPPWIQVDLGRTRTVTGVITGGRH-G-D-----GDGVTYKLLY--SDDG-NNWTTYKDGNSKVFPGNSDA 102 (139)
T ss_pred CCcccCCCCCCCceeEeeccCcEEEEEEEecccC-C-C-----CcEEEEEEEE--EeCC-CCEeEEeCCCeEEEeCccCC
Confidence 568987653 34799999999999999997521 1 1 1122344442 2222 224333 233333334
Q ss_pred CceeEEEecCCCcceeEEEEEEeecCCCCCCceEEEEEEee
Q psy13339 199 PTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHG 239 (365)
Q Consensus 199 ~~~Q~F~v~~~~~~~~~V~lri~SN~G~~~yTClYR~RVhG 239 (365)
...+...+.. ....+.|+|..++ |-+ .+..||-|+|
T Consensus 103 ~~~~~~~~~~-~v~ARyvRi~p~~-~~~---~~~~r~ElyG 138 (139)
T smart00231 103 GTVVVNEFPP-PIVARYIRILPTG-WNG---NIILRVELLG 138 (139)
T ss_pred CceEEEecCC-CEEEEEEEEEEeE-cCC---CcEEEEEEEc
Confidence 4555554544 2346889999983 432 3446999998
No 30
>PF14652 DUF4457: Domain of unknown function (DUF4457)
Probab=52.66 E-value=96 Score=30.97 Aligned_cols=42 Identities=7% Similarity=0.140 Sum_probs=33.1
Q ss_pred cCCceEEEEEcCceeEEEEEEEEecCCCCCCCCCCCCCCcEEEEE
Q psy13339 132 QGAIGCLVLKLSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVW 176 (365)
Q Consensus 132 ~Gs~G~L~I~Ls~~I~~~~vsieHi~~~~s~~~~~~SAPr~f~V~ 176 (365)
.|..-.|+|.|.++..+..|.|-...++.. +...--|+++|+
T Consensus 79 ~~~~~~i~i~f~~~~~is~iRIWNYNks~~---ds~~GvK~v~I~ 120 (329)
T PF14652_consen 79 PGKQHVITIRFPEPTSISGIRIWNYNKSRE---DSYRGVKDVKIY 120 (329)
T ss_pred CCCCEEEEEEeCCCceeeEEEEEcCCCCcc---hhhcCeEEEEEE
Confidence 466779999999999999999999877643 223347888887
No 31
>KOG0908|consensus
Probab=47.77 E-value=1.2e+02 Score=29.61 Aligned_cols=104 Identities=21% Similarity=0.327 Sum_probs=67.3
Q ss_pred ceEEEEEcCceeEEEEEEEEecCCCCCCCCCCCCCCcEEEEEEEecCCCC-------CceeEEEEEE-cCCCC--ceeEE
Q psy13339 135 IGCLVLKLSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDE-------NPTLLGEFMY-DSEGP--TLQYF 204 (365)
Q Consensus 135 ~G~L~I~Ls~~I~~~~vsieHi~~~~s~~~~~~SAPr~f~V~g~~~~~~~-------~~~~Lg~f~Y-d~~g~--~~Q~F 204 (365)
.+-+.|-+.+++.+-++-+.-+. -..+||..-++-....... ++..+-++.= +..|. ++-.+
T Consensus 164 Ql~isi~fnq~vk~hS~a~k~p~--------~~~~Pk~vkifin~pr~~~F~~a~~f~ptQ~lel~e~~~~~~~V~lryv 235 (288)
T KOG0908|consen 164 QLIISIPFNQAVKVHSIAIKGPA--------NPLGPKTVKIFINQPRTMDFENAESFEPTQLLELTELDLQGLPVPLRYV 235 (288)
T ss_pred ceEEEeeccCccceeeeecCCCC--------CCCCCeeEEEEecCccccCcccccccCcccccchhhhhccCceEEeeee
Confidence 56788888888888666554331 2468999998865443211 1222222211 11121 22333
Q ss_pred EecCCCcceeEEEEEEeecCCCCCCceEEEEEEeeeeCCCCCcccccccc
Q psy13339 205 EAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPSPSPVHTYNRF 254 (365)
Q Consensus 205 ~v~~~~~~~~~V~lri~SN~G~~~yTClYR~RVhG~~~~~~~~~~~~~~~ 254 (365)
.+++ ++.|.|-+.+|-|.++-|=+-++-++|.|++.+. .|+|
T Consensus 236 kfqn----V~sv~iFiq~n~gg~evtri~~~~~~GsPv~~t~----m~~~ 277 (288)
T KOG0908|consen 236 KFQN----VNSVQIFIQSNQGGEEVTRISKLGLFGSPVPTTN----MNDF 277 (288)
T ss_pred eEEE----eeEEEEEEecCCCCcccceeeeeeeccccCCCCC----CCcc
Confidence 3333 6888999999999999999999999999998876 4555
No 32
>COG4266 Alc Allantoicase [Nucleotide transport and metabolism]
Probab=45.57 E-value=1.7e+02 Score=28.81 Aligned_cols=94 Identities=16% Similarity=0.248 Sum_probs=57.3
Q ss_pred EEEEEcCceeEEEEEEEEecCCCCCCCCCCCCCCcEEEEEEEecCC-----CCCce-eEEEEEEcCCCCceeEEEecCCC
Q psy13339 137 CLVLKLSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKY-----DENPT-LLGEFMYDSEGPTLQYFEAKMVA 210 (365)
Q Consensus 137 ~L~I~Ls~~I~~~~vsieHi~~~~s~~~~~~SAPr~f~V~g~~~~~-----~~~~~-~Lg~f~Yd~~g~~~Q~F~v~~~~ 210 (365)
++.|+|+.|-++..+-|+-.--. | .=|-..+|-++.... +..++ .|-.+.--.+ .-..|+... .
T Consensus 78 ~~iiklg~~g~i~G~dIDTsfFt----G---Nhppa~Siea~~~~eg~pdd~T~W~eilp~~~lgp~--~hH~~~~~~-~ 147 (334)
T COG4266 78 WVIIKLGVPGRIKGVDIDTSFFT----G---NHPPAVSIEACYLAEGDPDDATRWVEILPKTGLGPN--QHHYFNGLT-K 147 (334)
T ss_pred EEEEEecCCceEEeeeeecceec----C---CCCCcceehhhhcCCCCcccccceeeeeeccCCCCC--ccccccccc-c
Confidence 79999999999999888754211 1 123334455543321 11232 2223322222 222343333 5
Q ss_pred cceeEEEEEEeecCCCCCCceEEEEEEeeeeCCCCC
Q psy13339 211 DTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPSPS 246 (365)
Q Consensus 211 ~~~~~V~lri~SN~G~~~yTClYR~RVhG~~~~~~~ 246 (365)
..+..|+|++----| |.||||||.++++.+
T Consensus 148 ~~~THirl~iyPDGG------IARlRlYG~p~~d~~ 177 (334)
T COG4266 148 ERFTHIRLNIYPDGG------IARLRLYGRPVPDWK 177 (334)
T ss_pred ccceeEEEEEcCCCC------EEEEEEcCcccCCcc
Confidence 678999999987766 899999999998865
No 33
>KOG1730|consensus
Probab=43.36 E-value=2.5e+02 Score=26.09 Aligned_cols=96 Identities=14% Similarity=0.206 Sum_probs=56.0
Q ss_pred EEEcCceeEEEEEEEEecCCCCCCCCCCCCCCcEEEEEEEecCCCC-CceeEEEEEEcC--CCCceeEEEecCC-Cccee
Q psy13339 139 VLKLSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDE-NPTLLGEFMYDS--EGPTLQYFEAKMV-ADTFD 214 (365)
Q Consensus 139 ~I~Ls~~I~~~~vsieHi~~~~s~~~~~~SAPr~f~V~g~~~~~~~-~~~~Lg~f~Yd~--~g~~~Q~F~v~~~-~~~~~ 214 (365)
-|-+...|.+..|+|--- +-+|+|-.+.|+--.+.-+= .-..--+++++. ++.++-.|++... -..+.
T Consensus 74 niPFtg~vkLkgI~I~g~--------~d~shP~~~rlFkNR~~m~FdD~~~~~dqef~lt~d~~g~iey~~K~s~f~nv~ 145 (206)
T KOG1730|consen 74 NIPFTGNVKLKGISIMGE--------PDGSHPSKMRLFKNREQMDFDDAEAEPDQEFSLTRDLTGEIEYPTKISKFQNVH 145 (206)
T ss_pred eccccCceeEEEEEEEeC--------CCCCCchheEeecCCccCCcchhhcCcceecceecccCceEEeccceeeeccce
Confidence 355566677777777532 34689999998843322100 000111222222 2233333333322 22357
Q ss_pred EEEEEEeecCCCCCCceEEEEEEeeeeCC
Q psy13339 215 MVELKILSNHGNIEYTCLYRFRVHGNLAP 243 (365)
Q Consensus 215 ~V~lri~SN~G~~~yTClYR~RVhG~~~~ 243 (365)
.+.+-|.+|.|. +-|=||-+.+-|+-.+
T Consensus 146 nLsi~f~~nfG~-D~TqI~YIGlRGeft~ 173 (206)
T KOG1730|consen 146 NLSIHFPKNFGE-DTTQIYYIGLRGEFTE 173 (206)
T ss_pred eEEEEeccccCC-CcceEEEEEecceeee
Confidence 789999999995 8999999999998654
No 34
>PF14652 DUF4457: Domain of unknown function (DUF4457)
Probab=36.11 E-value=2.5e+02 Score=27.97 Aligned_cols=42 Identities=7% Similarity=0.143 Sum_probs=30.6
Q ss_pred eCCeeEEEEEecceeEeeEEEEeecCCCCCCCCCCCCCCceeEEE
Q psy13339 307 QGAIGCLVLKLSHRIQVTRFSMEHIPKTLTPNGIIDSAPKKFAVW 351 (365)
Q Consensus 307 ~g~~g~~~i~l~~~i~~~~~tleHi~~~~~~~~~~~sapk~f~v~ 351 (365)
.|.+-.++|.|..+..++.+-+--=-|+.. +..---|+++|+
T Consensus 79 ~~~~~~i~i~f~~~~~is~iRIWNYNks~~---ds~~GvK~v~I~ 120 (329)
T PF14652_consen 79 PGKQHVITIRFPEPTSISGIRIWNYNKSRE---DSYRGVKDVKIY 120 (329)
T ss_pred CCCCEEEEEEeCCCceeeEEEEEcCCCCcc---hhhcCeEEEEEE
Confidence 467778899999999999999988777643 122236777776
No 35
>PF12386 Peptidase_C71: Pseudomurein endo-isopeptidase Pei; InterPro: IPR022119 This peptidase has the catalytic triad C-H-D at the C-terminal end, a triad similar to that in thiol proteases and animal transglutaminases. It catalyses the in vitro lysis of M. marburgensis cells under reducing conditions and exhibits characteristics of metal-activated peptidases.
Probab=33.22 E-value=78 Score=27.54 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=27.5
Q ss_pred CcceeEEEEEEeecCCCCCCceEEEEEEeeeeCCC
Q psy13339 210 ADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPS 244 (365)
Q Consensus 210 ~~~~~~V~lri~SN~G~~~yTClYR~RVhG~~~~~ 244 (365)
...++.+-+|++-|-| .+.|-||+||-|....+
T Consensus 72 GY~Vq~~HVk~rc~~g--~wygH~~LRv~~~~~~~ 104 (142)
T PF12386_consen 72 GYDVQFEHVKCRCNSG--KWYGHYRLRVKHKELTS 104 (142)
T ss_pred CceEEEEEEEEEecCC--ceeeEEEEEecceeccC
Confidence 6678888888888888 57799999999988664
No 36
>KOG4145|consensus
Probab=32.85 E-value=2.2e+02 Score=27.85 Aligned_cols=96 Identities=20% Similarity=0.273 Sum_probs=59.4
Q ss_pred EEEEEcCce-eEEEEEEEEecCCCCCCCCCCCCCCcEEEEEEEecCCCCCceeEEEEEEcC--C---CCceeE--E-Eec
Q psy13339 137 CLVLKLSHR-IQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDS--E---GPTLQY--F-EAK 207 (365)
Q Consensus 137 ~L~I~Ls~~-I~~~~vsieHi~~~~s~~~~~~SAPr~f~V~g~~~~~~~~~~~Lg~f~Yd~--~---g~~~Q~--F-~v~ 207 (365)
.+.++|+.| -+|+.+-|+---- -..+|-..+|-|+....+++-+.+..-.... . =.+.|. | .+.
T Consensus 83 WvI~klg~~ag~Itg~EIDT~fF-------nGNhap~vsVea~~l~~qEgnvi~~~~kW~pilpk~~cgP~QrHlf~r~~ 155 (340)
T KOG4145|consen 83 WVIFKLGHPAGVITGIEIDTKFF-------NGNHAPSVSVEACILTTQEGNVILPAHKWKPILPKTKCGPNQRHLFDRLT 155 (340)
T ss_pred EEEEEecCCcceEEEEEEeeeee-------cCCCCCcceEEEEEeccccCCcccccccceeccccccCCcchhhhhHhhc
Confidence 367999999 8888888885421 1246667889999887665333322111110 0 022333 2 122
Q ss_pred CC-CcceeEEEEEEeecCCCCCCceEEEEEEeeeeCCCC
Q psy13339 208 MV-ADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPSP 245 (365)
Q Consensus 208 ~~-~~~~~~V~lri~SN~G~~~yTClYR~RVhG~~~~~~ 245 (365)
.. +..|..++|.+----| +.|||++|..+|++
T Consensus 156 ~~~qd~fTH~rL~myPDGG------IaRfRLyG~vvP~~ 188 (340)
T KOG4145|consen 156 LELQDVFTHARLTMYPDGG------IARFRLYGRVVPSS 188 (340)
T ss_pred hhhhhheeeeEEEEecCCC------EEEEEEeccccCcc
Confidence 22 4567888888877666 78999999877764
No 37
>PF11303 DUF3105: Protein of unknown function (DUF3105); InterPro: IPR021454 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=30.58 E-value=20 Score=31.11 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=15.4
Q ss_pred cccccccceeeeccCCC
Q psy13339 257 ANHNTLHHMTSSKYNPS 273 (365)
Q Consensus 257 ~~~~~~~~~~~~~~~~s 273 (365)
+=||++|||.++.+++.
T Consensus 43 ~VH~LEHGaV~i~Y~p~ 59 (130)
T PF11303_consen 43 AVHNLEHGAVWITYDPC 59 (130)
T ss_pred HHHhhhcCcEEEEECCC
Confidence 55999999999999997
No 38
>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination. This family contains the single domain protein, APC10, a subunit of the anaphase-promoting complex (APC), as well as the DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC, a multi-protein complex (or cyclosome), is a cell cycle-regulated, E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. APC10-like DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included in this hierarchy. CUL7 is a member of the Cullin-RING ligase family and f
Probab=25.41 E-value=1.8e+02 Score=25.21 Aligned_cols=49 Identities=10% Similarity=0.031 Sum_probs=38.2
Q ss_pred CCCCCeeeeeCCeeE--EEEEecceeEeeEEEEeecCCCCCCCCCCCCCCceeEEEE
Q psy13339 298 KMRTNGMAFQGAIGC--LVLKLSHRIQVTRFSMEHIPKTLTPNGIIDSAPKKFAVWV 352 (365)
Q Consensus 298 ~~pg~cw~f~g~~g~--~~i~l~~~i~~~~~tleHi~~~~~~~~~~~sapk~f~v~g 352 (365)
..+..+|--.|++++ +.+++.+.+.+..+.|.=-+ -|=+=.|....|.|
T Consensus 22 ~~~~tyWQSdG~qphh~i~l~f~k~v~i~~l~i~~~~------~DeSYtP~~I~V~~ 72 (129)
T cd08159 22 GNYDTYWQSDGSQGSHWIRLFMKKDVLIRVLAIFVDM------ADSSYMPSLVVVYG 72 (129)
T ss_pred CCCCccCCCCCCCCCEEEEEEEcCCcEEEEEEEEecC------CCCCcCCcEEEEEe
Confidence 467799999999993 67888889999888886433 24456888888886
No 39
>KOG2437|consensus
Probab=25.19 E-value=2.1e+02 Score=30.76 Aligned_cols=122 Identities=18% Similarity=0.195 Sum_probs=82.6
Q ss_pred Ccccccc-ccCCCCCeeeccCCc--eEEEEEcCceeEEEEEEEEecCCCCCCCCCCCCCCcEEEEEEEecCCCCCceeEE
Q psy13339 114 SPRKAIQ-PGLLPGDCWAFQGAI--GCLVLKLSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDENPTLLG 190 (365)
Q Consensus 114 ~P~~aL~-p~~~pG~CW~f~Gs~--G~L~I~Ls~~I~~~~vsieHi~~~~s~~~~~~SAPr~f~V~g~~~~~~~~~~~Lg 190 (365)
-|..+|. ...+|.+=|...... -+|.++|.++.-|+.||.--..+. .-+--|+|.|+|-.+.-.-..++-|
T Consensus 23 ~P~NIl~d~P~d~NSRWS~~~N~~~QYiiLKl~~~aLV~~ITFGKy~k~------HvcNlKkf~v~ggR~~~~m~elL~~ 96 (723)
T KOG2437|consen 23 LPENILVDKPNDQNSRWSSESNYPPQYLILKLERPALVQNITFGKYEKT------HVCNLKKFKVFGGRNEENMTELLSS 96 (723)
T ss_pred cccceeeCCCCCcccccCCCCCCCceeEEEEcCCceeEEEEeccccccc------cccchhheEEecccchhhhHHHHhh
Confidence 4555554 456888888876543 489999999999999998765432 1256899999987765321111222
Q ss_pred EEEEcCCCCceeEEEecCC----CcceeEEEEEEeecCCCCCCceEEEEEEeeeeCCC
Q psy13339 191 EFMYDSEGPTLQYFEAKMV----ADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPS 244 (365)
Q Consensus 191 ~f~Yd~~g~~~Q~F~v~~~----~~~~~~V~lri~SN~G~~~yTClYR~RVhG~~~~~ 244 (365)
.-.=| ....||++... -.+.++|++.=+--||..----|+-+-+||..-++
T Consensus 97 GLkND---Sn~ETF~L~~K~~e~~f~c~YiKIvPL~Awg~~Fn~SiWyVeL~Gidd~~ 151 (723)
T KOG2437|consen 97 GLKND---SNKETFTLKHKIDEQMFPCRYIKIVPLLAWGPSFNFSIWYVELSGIDDPD 151 (723)
T ss_pred hcCCc---cccceeeeEEeeccceeeeeeEEEEEHhhcCCccceEEEEEEeecCCCHH
Confidence 22222 33456666433 45689999999999998666679999999986544
No 40
>PF06588 Muskelin_N: Muskelin N-terminus; InterPro: IPR010565 This entry represents the N-terminal region of muskelin and is found in conjunction with several IPR006652 from INTERPRO repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1 [].
Probab=23.12 E-value=1.4e+02 Score=27.83 Aligned_cols=39 Identities=23% Similarity=0.277 Sum_probs=30.2
Q ss_pred CCeeEEEEEecceeEeeEEEEeecCCCCCCCCCCCCCCceeEEEE
Q psy13339 308 GAIGCLVLKLSHRIQVTRFSMEHIPKTLTPNGIIDSAPKKFAVWV 352 (365)
Q Consensus 308 g~~g~~~i~l~~~i~~~~~tleHi~~~~~~~~~~~sapk~f~v~g 352 (365)
...-+|+++|.+|-.|++||.----|.-. .-=|+|.|||
T Consensus 42 ~~~QyiiLkL~~paiV~sItFGKy~K~Hv------CNlK~fkv~g 80 (199)
T PF06588_consen 42 SPPQYIILKLESPAIVKSITFGKYEKPHV------CNLKKFKVYG 80 (199)
T ss_pred CCCcEEEEEcCCCeEEEEEeccccccCcc------ccceeeEEec
Confidence 35668999999999999999865544422 3458999997
No 41
>KOG3038|consensus
Probab=20.35 E-value=80 Score=30.66 Aligned_cols=27 Identities=26% Similarity=0.178 Sum_probs=20.8
Q ss_pred CCCceEEEEEEeeeeCCCCCcccccccc
Q psy13339 227 IEYTCLYRFRVHGNLAPSPSPVHTYNRF 254 (365)
Q Consensus 227 ~~yTClYR~RVhG~~~~~~~~~~~~~~~ 254 (365)
|.-||+||--||+-+ ++.+-.|++-+|
T Consensus 210 P~TTcFY~aiVh~tp-~d~s~~y~vlff 236 (264)
T KOG3038|consen 210 PGTTCFYKAIVHSTP-RDGSCDYYVLFF 236 (264)
T ss_pred CCcceeeeeEeecCC-CCCCCcceeeee
Confidence 578999999999988 555556665566
Done!