RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy13339
         (365 letters)



>gnl|CDD|203750 pfam07738, Sad1_UNC, Sad1 / UNC-like C-terminal.  The C. elegans
           UNC-84 protein is a nuclear envelope protein that is
           involved in nuclear anchoring and migration during
           development. The S. pombe Sad1 protein localises at the
           spindle pole body. UNC-84 and and Sad1 share a common
           C-terminal region, that is often termed the SUN (Sad1
           and UNC) domain. In mammals, the SUN domain is present
           in two proteins, Sun1 and Sun2. The SUN domain of Sun2
           has been demonstrated to be in the periplasm.
          Length = 135

 Score =  128 bits (325), Expect = 1e-36
 Identities = 58/137 (42%), Positives = 80/137 (58%), Gaps = 7/137 (5%)

Query: 108 LWRRDSSPRKAIQPG---LLPGDCWAFQGAIGCLVLKLSHRIQVTRFSMEHIPKALTPNG 164
           L      P+  +QP     +PG CW+F+G+ G +V++LS  I V   ++EH+ K++ P  
Sbjct: 1   LNYEAKPPKVILQPDKDSYMPGPCWSFKGSRGFVVIELSEFIIVEAVTLEHVEKSVAP-- 58

Query: 165 IIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVAD-TFDMVELKILSN 223
              SAPK F V G     D    LLG+F YD +G T+Q F+ +   D     V+L+ILSN
Sbjct: 59  -YSSAPKDFEVSGSDRYPDTKWVLLGKFTYDLDGKTIQTFQLENPPDIWVKYVKLRILSN 117

Query: 224 HGNIEYTCLYRFRVHGN 240
           +GN  YTCLYRFRVHG 
Sbjct: 118 YGNEHYTCLYRFRVHGT 134



 Score = 53.9 bits (130), Expect = 5e-09
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 289 VMFQSHRAGKMRTNGMAFQGAIGCLVLKLSHRIQVTRFSMEHIPKTLTPNGIIDSAPKKF 348
           V+ Q  +   M     +F+G+ G +V++LS  I V   ++EH+ K++ P     SAPK F
Sbjct: 10  VILQPDKDSYMPGPCWSFKGSRGFVVIELSEFIIVEAVTLEHVEKSVAP---YSSAPKDF 66

Query: 349 AVWVSEHSQC 358
            V  S+    
Sbjct: 67  EVSGSDRYPD 76


>gnl|CDD|173359 PTZ00064, PTZ00064, histone acetyltransferase; Provisional.
          Length = 552

 Score = 34.6 bits (79), Expect = 0.075
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 35  WRRIENIKCSDKVRNEEVLRRIGEERSILRTIKKRK 70
           W+ I+N+  S  +R E+V+R I EE  I+R IK + 
Sbjct: 471 WKFIDNVVRSTGIRREDVIR-ILEENGIMRNIKDQH 505


>gnl|CDD|152822 pfam12387, Peptidase_C74, Pestivirus NS2 peptidase.  The pestivirus
           NS2 peptidase is responsible for single cleavage between
           NS2 and NS3 of the bovine viral diarrhea virus
           polyprotein, a cleavage that is correlated with
           cytopathogenicity. The peptidase is activated by its
           interaction with 'J-domain protein interacting with
           viral protein' - Jiv.
          Length = 200

 Score = 28.6 bits (64), Expect = 3.8
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 16  TWTMRKKEETYLESFEMWLWRRIENIKCSDKVRNEEVLRRIGEE 59
            W   ++E   L+ F + L  R++N+    KVRNE V    GEE
Sbjct: 97  NWAFDEEESKGLKKFFL-LSSRVKNLIIKHKVRNETVAHWYGEE 139


>gnl|CDD|223493 COG0416, PlsX, Fatty acid/phospholipid biosynthesis enzyme [Lipid
          metabolism].
          Length = 338

 Score = 27.9 bits (63), Expect = 9.9
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 14/65 (21%)

Query: 8  SVVLYGSETWTMRKKEETYLESFEMWLWRRIENIKCSDKVRNEEVLRRIGEERSILRTIK 67
           ++L G E      K E  L      L  RIE +   + +  ++            + ++
Sbjct: 33 EIILVGDE-----DKIEPLLAKAPKLLRERIEIVHAEEVIEMDD---------KPSQALR 78

Query: 68 KRKRS 72
          K+K S
Sbjct: 79 KKKGS 83


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.135    0.423 

Gapped
Lambda     K      H
   0.267   0.0658    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,563,453
Number of extensions: 1760370
Number of successful extensions: 1180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1176
Number of HSP's successfully gapped: 8
Length of query: 365
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 267
Effective length of database: 6,590,910
Effective search space: 1759772970
Effective search space used: 1759772970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.0 bits)