RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13339
(365 letters)
>4dxt_A SUN domain-containing protein 2; beta-sandwich, LINC complex,
structural protein; 2.22A {Homo sapiens} PDB: 3unp_A
4dxr_A* 4dxs_A*
Length = 198
Score = 189 bits (481), Expect = 2e-59
Identities = 81/161 (50%), Positives = 104/161 (64%), Gaps = 1/161 (0%)
Query: 83 GSVIDIRCTETYTLKDPYYVLFGYALWRRDSSPRKAIQPGLLPGDCWAFQGAIGCLVLKL 142
SVI RC+ETY K LFG LW SPR +QP + PG+CWAFQG G V++L
Sbjct: 37 ASVISTRCSETYETKTALLSLFGIPLWYHSQSPRVILQPDVHPGNCWAFQGPQGFAVVRL 96
Query: 143 SHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQ 202
S RI+ T ++EH+PKAL+PN I SAPK FA++G E + TLLG+F YD +G +Q
Sbjct: 97 SARIRPTAVTLEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLLGKFTYDQDGEPIQ 156
Query: 203 YFE-AKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLA 242
F T+ +VEL+IL+N G+ EYTC+YRFRVHG A
Sbjct: 157 TFHFQAPTMATYQVVELRILTNWGHPEYTCIYRFRVHGEPA 197
Score = 63.1 bits (153), Expect = 6e-12
Identities = 33/107 (30%), Positives = 45/107 (42%), Gaps = 7/107 (6%)
Query: 262 LHHMTSSKYNPSGTEEEKSNRSVALTWVMFQSHRAGKMRTNGM----AFQGAIGCLVLKL 317
+ S Y + W QS R AFQG G V++L
Sbjct: 40 ISTRCSETYETKTA---LLSLFGIPLWYHSQSPRVILQPDVHPGNCWAFQGPQGFAVVRL 96
Query: 318 SHRIQVTRFSMEHIPKTLTPNGIIDSAPKKFAVWVSEHSQCNVTFLL 364
S RI+ T ++EH+PK L+PN I SAPK FA++ + LL
Sbjct: 97 SARIRPTAVTLEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLL 143
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 1e-06
Identities = 64/479 (13%), Positives = 136/479 (28%), Gaps = 168/479 (35%)
Query: 1 MKINVGRSVVLYG----SETW----TMRKKEETYLESFEM-WLWRRIENIKCSDKVRNEE 51
+++ ++V++ G +TW + F++ WL ++N
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL-----------NLKNCN 193
Query: 52 VLRRIGEERSILRTIKKRKRSWLGHILRRDCGSVIDIRCTETYTLKDPYYVLFGYALWRR 111
++L ++K L + + + S D + L L +
Sbjct: 194 ------SPETVLEMLQK-----LLYQIDPNWTSRSDHSSNIKLRIHSIQAEL--RRLLKS 240
Query: 112 DSSPRKAIQPGLLP-GDCW------AFQGAIGCLVLKLSHRIQVTRF---------SMEH 155
LL + AF + C +L + QVT F S++H
Sbjct: 241 KPYEN-----CLLVLLNVQNAKAWNAF--NLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 156 IPKALTPNGIIDSAPKKFAVWGLREKYDE--------NP---TLLGEFMYDSEGP-TLQY 203
LTP D + L + + NP +++ E + +G T
Sbjct: 294 HSMTLTP----DEVKSLLLKY-LDCRPQDLPREVLTTNPRRLSIIAESI--RDGLATWDN 346
Query: 204 FE-------AKMVADTFDMVE----------LKILSNHGNIEYTCL-------------- 232
++ ++ + +++E L + +I L
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 233 -----------------YRFRVHG---NLAPSPS---PVH-----TYNRFSSANHNTL-- 262
+ L +H YN + + + L
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 263 ------------HHMTSSKYNPSGTEEEKSNRSVAL--TWVMFQSHRAGKMRTNGMAFQG 308
HH+ + ++ E R V L ++ K+R + A+
Sbjct: 467 PYLDQYFYSHIGHHLKNIEH----PERMTLFRMVFLDFRFL------EQKIRHDSTAWNA 516
Query: 309 AIGCLVLKLSHRIQVTRFSMEHI-PKTLTPNGIIDSAPKKFAVWVSEHS-QCNVTFLLQ 365
+ L + +Q +F +I ++++ F + E+ T LL+
Sbjct: 517 SGSIL-----NTLQQLKFYKPYICDNDPKYERLVNAI-LDFLPKIEENLICSKYTDLLR 569
Score = 38.7 bits (89), Expect = 0.003
Identities = 57/375 (15%), Positives = 92/375 (24%), Gaps = 159/375 (42%)
Query: 17 WTMRKKEETYLESF--EM------WLWRRIENIKCSDKVRNEEVLRRIGEERSILRTIKK 68
WT+ K+E ++ F E+ +L I+ + I++
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT-EQRQPSMMTR------------MYIEQ 115
Query: 69 RKRSWLGHILRRDCGSVIDIRCTETYTLKDPYYVLFGYALWRRDSSPRKAIQPGLL---P 125
R R + D V Y V R P ++ LL P
Sbjct: 116 RDRLY------ND-NQVF-----------AKYNV------SRLQ--PYLKLRQALLELRP 149
Query: 126 GDCWAFQGAIGC----LVLK--LSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLR 179
G +G + L LS+++Q + I F W L
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQ-CKM----------DFKI-------F--W-LN 188
Query: 180 EKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHG 239
K +P + L++L L +++
Sbjct: 189 LKNCNSPETV----------------------------LEMLQK--------LL-YQIDP 211
Query: 240 NLAPSPS-PVHTYNRFSSANHNTLHHMTSSKYNPSGTEEEKSNRS------VALTWVMFQ 292
N + R S + S Y V
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY----------ENCLLVLLNVQNAKAW-- 259
Query: 293 SHRAGKMRTNGMAFQGAIGCLVLKLSHRIQVTRF---------SMEHIPKTLTPNGIIDS 343
AF + C +L + QVT F S++H TLTP D
Sbjct: 260 -----------NAF--NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP----DE 302
Query: 344 APKKFAVWVSEHSQC 358
++ Q
Sbjct: 303 VKSLLLKYLDCRPQD 317
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.006
Identities = 37/236 (15%), Positives = 71/236 (30%), Gaps = 71/236 (30%)
Query: 145 RIQVTRFSMEHIPKALTPNGIIDSAPKK----FAVWG-----------LREKYDENPTLL 189
RI R + AL + + A++G LR+ Y L+
Sbjct: 130 RIMAKRPFDKKSNSAL-----FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV 184
Query: 190 GEFMYDSEGPTLQYFEA------KMVADTFDMVE-LKILSNHGNIEYTC----------L 232
G+ + TL K+ +++E L+ SN + +Y +
Sbjct: 185 GDLI-KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGV 243
Query: 233 YRF-------RVHGNLAPSPSPVHTYNRFSSANHNTLHH---MTSSKYNPSGTEEE-KSN 281
+ ++ G +P + A T H +T+ + + E +
Sbjct: 244 IQLAHYVVTAKLLGF-----TPGELRSYLKGA---TGHSQGLVTAVAIAETDSWESFFVS 295
Query: 282 RSVALTWVMFQSHRAGKMRTNGMAFQGAIGCLVLKLSHRIQVTRFSMEHIPKTLTP 337
A+T +F G+ A L S + S+E+ +P
Sbjct: 296 VRKAITV-LFFI---------GVRCYEAYPNTSLPPS----ILEDSLENNEGVPSP 337
Score = 33.1 bits (75), Expect = 0.19
Identities = 30/181 (16%), Positives = 48/181 (26%), Gaps = 64/181 (35%)
Query: 176 WGLREKYDENPTLL--GEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNH--------- 224
+ R P L G + PT +F A + + F KIL
Sbjct: 4 YSTR------PLTLSHGSLEHVLLVPTASFFIASQLQEQF----NKILPEPTEGFAADDE 53
Query: 225 --GNIEYTCLYRF------RVHGNLAPSPSPV--HTYNRFSSA--NHNTLHHMTSSKYNP 272
E + +F V + V F + N +H + +
Sbjct: 54 PTTPAEL--VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQE 111
Query: 273 SGTEEEK--------------SNRSV------ALTWVMFQSHRAGKMRTNGMA-F--QGA 309
+ T K + R AL F++ G + +A F QG
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL----FRAVGEGNAQL--VAIFGGQGN 165
Query: 310 I 310
Sbjct: 166 T 166
Score = 28.9 bits (64), Expect = 3.3
Identities = 19/127 (14%), Positives = 34/127 (26%), Gaps = 41/127 (32%)
Query: 220 ILSNHGNIEYTCLYRFRVHGNLAPSPSPVHTY-----NRFSSANHNTLHHMTSSKYNPSG 274
LS HG++E+ V P+ +F+ L T +
Sbjct: 10 TLS-HGSLEHV----LLV-------PTASFFIASQLQEQFNK----ILPEPTE---GFAA 50
Query: 275 TEEEKSNRSVALTWVMFQSHRAGKMRTNGMAFQGAIGCLVLKLSHRIQVTRFSMEHIPKT 334
+E + L F + + + + K+ QV +
Sbjct: 51 DDEPTT--PAEL-VGKFLGYVSSLVEPS-------------KVGQFDQVLNLCLTEFENC 94
Query: 335 -LTPNGI 340
L N I
Sbjct: 95 YLEGNDI 101
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.80
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 11/33 (33%)
Query: 88 IRCTETYTLKDPYYVLFGYALWRRDSSPRKAIQ 120
++ + +LK L YA DS+P AI+
Sbjct: 22 LKKLQA-SLK-----L--YA---DDSAPALAIK 43
>1ybz_A Chorismate mutase; conserved hypothetical protein,
hyperthermophIle, structural genomics, PSI, protein
structu initiative; 1.82A {Pyrococcus furiosus} SCOP:
a.130.1.1
Length = 91
Score = 26.9 bits (60), Expect = 3.7
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 45 DKVRNEEVLRRIGEERSILRTI 66
D+ R EEVLRR GE R I I
Sbjct: 60 DRKREEEVLRRAGEFREIFEKI 81
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas
aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A*
Length = 298
Score = 27.8 bits (61), Expect = 6.7
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 218 LKILSNHGNIEYTCLYRFRVHGNLAPSP 245
L +L+ +G++ LYR R P P
Sbjct: 32 LALLAQYGSLRIAGLYRVRYDRTPEPQP 59
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.423
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,658,584
Number of extensions: 330411
Number of successful extensions: 568
Number of sequences better than 10.0: 1
Number of HSP's gapped: 563
Number of HSP's successfully gapped: 21
Length of query: 365
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 270
Effective length of database: 4,049,298
Effective search space: 1093310460
Effective search space used: 1093310460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.6 bits)