RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13339
         (365 letters)



>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding
          protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 66

 Score = 27.8 bits (62), Expect = 0.33
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 46 KVRNEEVLRRIGEERSILRTIKKRKRSWL 74
           +R  E+ RR     S L TI K KR+ L
Sbjct: 25 DLRKGEIARRFNIPPSTLSTILKNKRAIL 53


>d1bf2a1 b.1.18.2 (A:1-162) Isoamylase, N-terminal domain N
           {Pseudomonas amyloderamosa [TaxId: 32043]}
          Length = 162

 Score = 27.5 bits (60), Expect = 1.6
 Identities = 11/104 (10%), Positives = 26/104 (25%), Gaps = 12/104 (11%)

Query: 173 FAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEY--- 229
           F V+           L           +  Y    +      +  + +  +         
Sbjct: 20  FRVYS---SQATRIVLYLYSAGYGVQESATY---TLSPAGSGVWAVTVPVSSIKAAGITG 73

Query: 230 TCLYRFRVHGNLAPSPSPVHTYNRFSSANHNTLHHMTSSKYNPS 273
              Y +R  G   P  S     ++    +    +     ++NP+
Sbjct: 74  AVYYGYRAWGPNWPYASNWGKGSQAGFVSDVDANGD---RFNPN 114


>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 345

 Score = 28.3 bits (62), Expect = 1.7
 Identities = 18/108 (16%), Positives = 31/108 (28%), Gaps = 15/108 (13%)

Query: 41  IKCSDKVRNEEVLRRIGEERSILRTIKKRKRSWLGHILRRDCGSVIDIRCTETYTLKDPY 100
           IK      ++   +R   E  IL   +        +I+      + DI    T       
Sbjct: 38  IKKISPFEHQTYCQRTLREIKILLRFRHE------NIIG-----INDIIRAPTIEQMKDV 86

Query: 101 YVLFGYALWRRDSSPRKAIQPGLLPGDCWAFQGAIGCLVLKLSHRIQV 148
           Y++         +   K ++   L  D   +        LK  H   V
Sbjct: 87  YLVTHLM----GADLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANV 130


>d1ybza1 a.130.1.1 (A:2-75) mono-domain chorismate mutase
          {Pyrococcus furiosus [TaxId: 2261]}
          Length = 74

 Score = 25.8 bits (57), Expect = 2.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 31 EMWLWRRIENIKCSDKVRNEEVLRRIGEERSILRTI 66
           +   ++  N+   D+ R EEVLRR GE R I   I
Sbjct: 30 AIGKIKKELNLPIEDRKREEEVLRRAGEFREIFEKI 65


>d1jhja_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting
           complex {Human (Homo sapiens) [TaxId: 9606]}
          Length = 161

 Score = 26.9 bits (59), Expect = 2.9
 Identities = 12/103 (11%), Positives = 35/103 (33%), Gaps = 5/103 (4%)

Query: 137 CLVLKLSHRIQVTRFSMEHIPKALTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDS 196
            + ++   +  V    + +       +      P K +V      ++       E +  S
Sbjct: 62  LVNIQFRRKTTVKTLCI-YADYKSDESYT----PSKISVRVGNNFHNLQEIRQLELVEPS 116

Query: 197 EGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHG 239
               +   +         M+++ +L+NH N   T + + +++ 
Sbjct: 117 GWIHVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYT 159


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.423 

Gapped
Lambda     K      H
   0.267   0.0710    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,414,804
Number of extensions: 66517
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 11
Length of query: 365
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 278
Effective length of database: 1,213,086
Effective search space: 337237908
Effective search space used: 337237908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)