BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13340
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FI9|A Chain A, Structure Of Human Sun-Kash Complex
Length = 195
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 66/92 (71%), Gaps = 3/92 (3%)
Query: 1 MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQ--YFEAKMVA 58
+EH+PK L+PN I SAPK FA++G E + TLLG+F YD +G +Q +F+A +A
Sbjct: 104 LEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLLGKFTYDQDGEPIQTFHFQAPTMA 163
Query: 59 DTFDMVELKILSNHGNIEYTCLYRFRVHGNLA 90
T+ +VEL+IL+N G+ EYTC+YRFRVHG A
Sbjct: 164 -TYQVVELRILTNWGHPEYTCIYRFRVHGEPA 194
>pdb|4DXT|A Chain A, Human Sun2 (Aa 522-717)
Length = 198
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 66/92 (71%), Gaps = 3/92 (3%)
Query: 1 MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQ--YFEAKMVA 58
+EH+PK L+PN I SAPK FA++G E + TLLG+F YD +G +Q +F+A +A
Sbjct: 107 LEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLLGKFTYDQDGEPIQTFHFQAPTMA 166
Query: 59 DTFDMVELKILSNHGNIEYTCLYRFRVHGNLA 90
T+ +VEL+IL+N G+ EYTC+YRFRVHG A
Sbjct: 167 -TYQVVELRILTNWGHPEYTCIYRFRVHGEPA 197
>pdb|3UNP|A Chain A, Structure Of Human Sun2 Sun Domain
Length = 203
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 66/92 (71%), Gaps = 3/92 (3%)
Query: 1 MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQ--YFEAKMVA 58
+EH+PK L+PN I SAPK FA++G E + TLLG+F YD +G +Q +F+A +A
Sbjct: 107 LEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLLGKFTYDQDGEPIQTFHFQAPTMA 166
Query: 59 DTFDMVELKILSNHGNIEYTCLYRFRVHGNLA 90
T+ +VEL+IL+N G+ EYTC+YRFRVHG A
Sbjct: 167 -TYQVVELRILTNWGHPEYTCIYRFRVHGEPA 197
>pdb|4DXR|A Chain A, Human Sun2-Kash1 Complex
pdb|4DXS|A Chain A, Human Sun2-Kash2 Complex
Length = 202
Score = 100 bits (248), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 66/92 (71%), Gaps = 3/92 (3%)
Query: 1 MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQ--YFEAKMVA 58
+EH+PK L+PN I SAPK FA++G E + TLLG+F YD +G +Q +F+A +A
Sbjct: 111 LEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLLGKFTYDQDGEPIQTFHFQAPTMA 170
Query: 59 DTFDMVELKILSNHGNIEYTCLYRFRVHGNLA 90
T+ +VEL+IL+N G+ EYTC+YRFRVHG A
Sbjct: 171 -TYQVVELRILTNWGHPEYTCIYRFRVHGEPA 201
>pdb|2J1K|C Chain C, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|D Chain D, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|E Chain E, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|F Chain F, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|H Chain H, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|I Chain I, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|L Chain L, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|M Chain M, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|N Chain N, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|Q Chain Q, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|R Chain R, Cav-2 Fibre Head In Complex With Car D1
pdb|2J1K|S Chain S, Cav-2 Fibre Head In Complex With Car D1
pdb|2J2J|A Chain A, Canine Adenovirus Fibre Head At 1.5 A Resolution
pdb|2J2J|B Chain B, Canine Adenovirus Fibre Head At 1.5 A Resolution
pdb|2J2J|C Chain C, Canine Adenovirus Fibre Head At 1.5 A Resolution
pdb|2J2J|D Chain D, Canine Adenovirus Fibre Head At 1.5 A Resolution
pdb|2J2J|E Chain E, Canine Adenovirus Fibre Head At 1.5 A Resolution
pdb|2J2J|F Chain F, Canine Adenovirus Fibre Head At 1.5 A Resolution
pdb|2W9L|C Chain C, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|D Chain D, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|E Chain E, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|F Chain F, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|H Chain H, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|I Chain I, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|L Chain L, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|M Chain M, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|N Chain N, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|Q Chain Q, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|R Chain R, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
pdb|2W9L|S Chain S, Canine Adenovirus Type 2 Fibre Head In Complex With Car
Domain D1 And Sialic Acid
Length = 197
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 33 NPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPS 92
N + +GE Y PT F M D F L + GNI T + + GN
Sbjct: 54 NASFVGEGGYRIVSPTQSQFSLIMEFDQFGQ-----LMSTGNINSTTTWGEKPWGNNTVQ 108
Query: 93 PSPVHTY 99
P P HT+
Sbjct: 109 PRPSHTW 115
>pdb|2WBV|A Chain A, Canine Adenovirus 2 Fibre Head In Complex With Sialic Acid
pdb|2WBV|B Chain B, Canine Adenovirus 2 Fibre Head In Complex With Sialic Acid
pdb|2WBV|C Chain C, Canine Adenovirus 2 Fibre Head In Complex With Sialic Acid
pdb|2WBV|D Chain D, Canine Adenovirus 2 Fibre Head In Complex With Sialic Acid
pdb|2WBV|E Chain E, Canine Adenovirus 2 Fibre Head In Complex With Sialic Acid
pdb|2WBV|F Chain F, Canine Adenovirus 2 Fibre Head In Complex With Sialic Acid
Length = 189
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 33 NPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPS 92
N + +GE Y PT F M D F L + GNI T + + GN
Sbjct: 46 NASFVGEGGYRIVSPTQSQFSLIMEFDQFGQ-----LMSTGNINSTTTWGEKPWGNNTVQ 100
Query: 93 PSPVHTY 99
P P HT+
Sbjct: 101 PRPSHTW 107
>pdb|2IUK|A Chain A, Crystal Structure Of Soybean Lipoxygenase-D
pdb|2IUK|B Chain B, Crystal Structure Of Soybean Lipoxygenase-D
Length = 864
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 51 YFEAKMVADTFDMVELKI--LSNHGNIEYTC---LYRFR 84
++ + D F +V +K+ + NHG IE+ C +Y FR
Sbjct: 123 FYIKNFMTDEFFLVSVKLEDIPNHGTIEFVCNSWVYNFR 161
>pdb|1YQW|A Chain A, Structure Of The Oxidized Unready Form Of Ni-Fe
Hydrogenase
pdb|1YQW|B Chain B, Structure Of The Oxidized Unready Form Of Ni-Fe
Hydrogenase
pdb|1YQW|C Chain C, Structure Of The Oxidized Unready Form Of Ni-Fe
Hydrogenase
pdb|3CUR|A Chain A, Structure Of A Double Methionine Mutant Of Ni-Fe
Hydrogenase
pdb|3CUR|B Chain B, Structure Of A Double Methionine Mutant Of Ni-Fe
Hydrogenase
pdb|3CUR|C Chain C, Structure Of A Double Methionine Mutant Of Ni-Fe
Hydrogenase
pdb|3CUS|A Chain A, Structure Of A Double IlePHE MUTANT OF NI-Fe Hydrogenase
Refined At 2.2 Angstrom Resolution
pdb|3CUS|B Chain B, Structure Of A Double IlePHE MUTANT OF NI-Fe Hydrogenase
Refined At 2.2 Angstrom Resolution
pdb|3CUS|C Chain C, Structure Of A Double IlePHE MUTANT OF NI-Fe Hydrogenase
Refined At 2.2 Angstrom Resolution
pdb|3H3X|A Chain A, Structure Of The V74m Large Subunit Mutant Of Ni-Fe
Hydrogenase In An Oxidized State
pdb|3H3X|B Chain B, Structure Of The V74m Large Subunit Mutant Of Ni-Fe
Hydrogenase In An Oxidized State
pdb|3H3X|C Chain C, Structure Of The V74m Large Subunit Mutant Of Ni-Fe
Hydrogenase In An Oxidized State
Length = 264
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 15/86 (17%)
Query: 31 DEN--PTLL-GEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHG 87
DEN P L GE ++D+ P L +FEA A +FD E K + CLY G
Sbjct: 170 DENGRPKLFYGELVHDN-CPRLPHFEASEFAPSFDSEEAK--------KGFCLYELGCKG 220
Query: 88 NLAPSPSPVHTYNRFS---SANHNTL 110
+ + P +N+ + A H L
Sbjct: 221 PVTYNNCPKVLFNQVNWPVQAGHPCL 246
>pdb|1FRF|S Chain S, Crystal Structure Of The Ni-Fe Hydrogenase From
Desulfovibrio Fructosovorans
Length = 264
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 15/86 (17%)
Query: 31 DEN--PTLL-GEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHG 87
DEN P L GE ++D+ P L +FEA A +FD E K + CLY G
Sbjct: 170 DENGRPKLFYGELVHDN-CPRLPHFEASEFAPSFDSEEAK--------KGFCLYELGCKG 220
Query: 88 NLAPSPSPVHTYNRFS---SANHNTL 110
+ + P +N+ + A H L
Sbjct: 221 PVTYNNCPKVLFNQVNWPVQAGHPCL 246
>pdb|1YRQ|A Chain A, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
pdb|1YRQ|B Chain B, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
pdb|1YRQ|C Chain C, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
pdb|1YRQ|D Chain D, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
pdb|1YRQ|F Chain F, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
pdb|1YRQ|G Chain G, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
Length = 264
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Query: 38 GEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPSPSPVH 97
GE ++D+ P L +FEA A +FD E K + CLY G + + P
Sbjct: 180 GELVHDN-CPRLPHFEASEFAPSFDSEEAK--------KGFCLYELGCKGPVTYNNCPKV 230
Query: 98 TYNRFS---SANHNTL 110
+N+ + A H L
Sbjct: 231 LFNQVNWPVQAGHPCL 246
>pdb|3L5I|A Chain A, Crystal Structure Of Fniii Domains Of Human Gp130 (Domains
4-6)
Length = 290
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 44 SEGPTLQYFEAKMVADTFDMVELKILSNHGNIE-YTCLYRFRVHGNLAPSPSPVHTYNRF 102
S+GPT++ + + +L + +G I YT YR + A + HT
Sbjct: 198 SKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVDSSHTEYTL 257
Query: 103 SSANHNTLHHMTSSKY 118
SS +TL+ + + Y
Sbjct: 258 SSLTSDTLYXVRXAAY 273
>pdb|1EKJ|A Chain A, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|B Chain B, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|C Chain C, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|D Chain D, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|E Chain E, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|F Chain F, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|G Chain G, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|H Chain H, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
Length = 221
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 27 REKYDENPTLLGEFMYDSEGPTLQY 51
+EKYD+NP L GE P + +
Sbjct: 26 KEKYDKNPALYGELAKGQSPPFMVF 50
>pdb|2HV2|A Chain A, Crystal Structure Of Conserved Protein Of Unknown Function
From Enterococcus Faecalis V583 At 2.4 A Resolution,
Probable N- Acyltransferase
pdb|2HV2|B Chain B, Crystal Structure Of Conserved Protein Of Unknown Function
From Enterococcus Faecalis V583 At 2.4 A Resolution,
Probable N- Acyltransferase
pdb|2HV2|C Chain C, Crystal Structure Of Conserved Protein Of Unknown Function
From Enterococcus Faecalis V583 At 2.4 A Resolution,
Probable N- Acyltransferase
pdb|2HV2|D Chain D, Crystal Structure Of Conserved Protein Of Unknown Function
From Enterococcus Faecalis V583 At 2.4 A Resolution,
Probable N- Acyltransferase
pdb|2HV2|E Chain E, Crystal Structure Of Conserved Protein Of Unknown Function
From Enterococcus Faecalis V583 At 2.4 A Resolution,
Probable N- Acyltransferase
pdb|2HV2|F Chain F, Crystal Structure Of Conserved Protein Of Unknown Function
From Enterococcus Faecalis V583 At 2.4 A Resolution,
Probable N- Acyltransferase
Length = 400
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 42 YDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPSPSPVHTYNR 101
Y SEG Y ++ A TF++VE L+N + L F G+ + S H N
Sbjct: 207 YSSEGKAEGYVIYRIAAGTFEIVEWNYLTNTA---FKALAGFI--GSHSGSVQSFHWING 261
Query: 102 FSSANHNTL 110
F+ + N L
Sbjct: 262 FAGKDLNDL 270
>pdb|3ZN3|A Chain A, N-terminal Domain Of S. Pombe Cdc23 Apc Subunit
Length = 291
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 1 MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSE 45
MEHIP + TP G D P A L E ++N LL + +D +
Sbjct: 41 MEHIPFSSTPTGEFDLDP-DMANEKLLEVEEKNIYLLAKSYFDCK 84
>pdb|2P4W|A Chain A, Crystal Structure Of Heat Shock Regulator From Pyrococcus
Furiosus
pdb|2P4W|B Chain B, Crystal Structure Of Heat Shock Regulator From Pyrococcus
Furiosus
Length = 202
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 11/56 (19%)
Query: 1 MEHIPKTLTPNGIIDSA--------PKKFAVW--GLREKYDENPTLLGEFMYDSEG 46
+EH+ + L G+I+S P+K+ + GLR + PTL G MY+++G
Sbjct: 46 LEHL-RILEEAGLIESRVEKIPRGRPRKYYMIKKGLRLEILLTPTLFGSEMYEAKG 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,106,962
Number of Sequences: 62578
Number of extensions: 152565
Number of successful extensions: 306
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 296
Number of HSP's gapped (non-prelim): 19
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)