Query psy13340
Match_columns 121
No_of_seqs 107 out of 296
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 16:57:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13340.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13340hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2687|consensus 100.0 7.7E-35 1.7E-39 246.4 11.0 92 1-92 321-413 (414)
2 PF07738 Sad1_UNC: Sad1 / UNC- 100.0 5.2E-32 1.1E-36 195.7 8.2 86 1-89 49-135 (135)
3 KOG1396|consensus 98.1 4.7E-07 1E-11 79.4 -1.4 79 12-92 189-267 (530)
4 cd00057 FA58C Substituted upda 97.0 0.0044 9.6E-08 43.4 7.7 66 15-87 72-143 (143)
5 PF06201 PITH: PITH domain; I 95.1 0.064 1.4E-06 40.3 5.6 66 13-88 69-151 (152)
6 PF03256 APC10: Anaphase-promo 86.4 5.2 0.00011 31.3 7.8 81 16-99 95-178 (193)
7 PF00754 F5_F8_type_C: F5/8 ty 83.8 6.9 0.00015 25.9 6.5 62 17-81 65-127 (129)
8 cd08366 APC10 APC10 subunit of 82.3 17 0.00038 26.9 8.7 72 13-87 64-139 (139)
9 PF03561 Allantoicase: Allanto 73.1 29 0.00063 26.2 7.7 66 15-87 76-152 (152)
10 PF14652 DUF4457: Domain of un 70.4 4 8.7E-05 34.1 2.7 30 59-88 186-215 (329)
11 PF14652 DUF4457: Domain of un 67.1 4.1 9E-05 34.0 2.1 27 65-91 1-27 (329)
12 PF06588 Muskelin_N: Muskelin 59.3 8.4 0.00018 30.7 2.4 43 49-91 101-150 (199)
13 PRK13257 allantoicase; Provisi 59.1 46 0.001 28.4 7.0 67 15-90 257-335 (336)
14 cd08667 APC10-ZZEF1 APC10/DOC1 55.2 83 0.0018 23.3 7.6 30 58-87 102-131 (131)
15 PF12386 Peptidase_C71: Pseudo 53.3 26 0.00057 26.4 4.1 42 49-92 61-104 (142)
16 TIGR02961 allantoicase allanto 50.0 46 0.00099 28.3 5.5 71 16-94 87-165 (322)
17 PRK13257 allantoicase; Provisi 50.0 46 0.001 28.4 5.6 71 16-94 102-177 (336)
18 KOG0908|consensus 48.6 86 0.0019 26.3 6.8 75 14-92 187-271 (288)
19 PF14958 DUF4506: Domain of un 47.8 1.1E+02 0.0025 22.6 8.4 74 18-96 37-113 (138)
20 cd08665 APC10-CUL7 APC10-like 46.4 26 0.00056 26.0 3.2 26 62-87 106-131 (131)
21 KOG3437|consensus 45.8 40 0.00087 26.6 4.2 34 60-93 130-163 (184)
22 PF10807 DUF2541: Protein of u 43.2 1.4E+02 0.0031 22.4 7.2 55 35-93 64-123 (134)
23 PF15532 Toxin_53: Putative to 41.9 24 0.00052 25.4 2.3 23 62-90 23-45 (102)
24 PF12306 PixA: Inclusion body 39.5 41 0.00089 25.5 3.4 29 60-88 64-93 (172)
25 smart00231 FA58C Coagulation f 37.4 1.3E+02 0.0029 20.9 5.6 35 48-87 104-138 (139)
26 PRK13797 putative bifunctional 32.2 2.3E+02 0.0049 25.6 7.3 70 15-93 258-337 (516)
27 PF12134 PRP8_domainIV: PRP8 d 31.5 14 0.00031 30.0 -0.3 14 76-89 22-35 (231)
28 PRK10154 hypothetical protein; 31.4 1.5E+02 0.0032 22.3 5.1 51 39-93 70-123 (134)
29 PF13860 FlgD_ig: FlgD Ig-like 29.2 1.5E+02 0.0033 19.2 4.5 49 40-88 30-78 (81)
30 PF14709 DND1_DSRM: double str 27.9 52 0.0011 21.9 2.1 12 80-91 36-47 (80)
31 TIGR02961 allantoicase allanto 27.5 2.7E+02 0.0058 23.7 6.7 65 15-88 246-322 (322)
32 PF00844 Gemini_coat: Geminivi 27.3 47 0.001 26.4 2.1 31 63-93 74-104 (244)
33 smart00026 EPEND Ependymins. E 27.2 2.7E+02 0.0058 22.0 6.2 37 17-53 5-41 (191)
34 PRK13797 putative bifunctional 27.1 1.7E+02 0.0036 26.5 5.6 42 47-94 136-178 (516)
35 PF13364 BetaGal_dom4_5: Beta- 26.8 2.2E+02 0.0048 19.7 6.9 38 34-74 71-110 (111)
36 PF09458 H_lectin: H-type lect 25.0 1.8E+02 0.0039 18.1 6.1 48 35-86 19-66 (72)
37 PF07039 DUF1325: SGF29 tudor- 21.8 1.1E+02 0.0023 22.3 2.9 16 75-90 83-98 (130)
38 PF05910 DUF868: Plant protein 20.3 65 0.0014 26.8 1.6 13 76-88 6-18 (274)
No 1
>KOG2687|consensus
Probab=100.00 E-value=7.7e-35 Score=246.38 Aligned_cols=92 Identities=46% Similarity=0.863 Sum_probs=87.4
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCC-CccccEEEEEEecCCCCCCCce
Q psy13340 1 MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMV-ADTFDMVELKILSNHGNIEYTC 79 (121)
Q Consensus 1 lEHip~~lsp~~~~sSAPKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~-~~~~~~V~l~i~SN~Gn~~YTC 79 (121)
|||||++++|+++++||||||.|||+..++.++.++||+|+||.++.++|||.|+.. ..+|+.|+|+|+||||++.|||
T Consensus 321 leHv~~sVspd~~~sSAPKdf~V~g~~~~~~~~~~LLG~ftYD~d~~~~QtF~~q~~~~~~~~~V~l~~~SN~G~p~fTC 400 (414)
T KOG2687|consen 321 LEHVPKSVSPDGNISSAPKDFDVFGSTQDCTEEEVLLGEFTYDLDGSPIQTFSLQHDTSAPFKTVELRFNSNHGHPKFTC 400 (414)
T ss_pred eecccceecCCCCcCcCCcceEEEeecccCCcCceeeEEEEECCCCCcceEEeccCCCccccceEEEEEecCCCCCCceE
Confidence 699999999999999999999999999987788899999999999999999999998 6789999999999999999999
Q ss_pred EEEEEEeceeCCC
Q psy13340 80 LYRFRVHGNLAPS 92 (121)
Q Consensus 80 lYR~RVHG~~~~~ 92 (121)
||||||||++++.
T Consensus 401 iYR~RVhG~~~~~ 413 (414)
T KOG2687|consen 401 IYRFRVHGRPVDP 413 (414)
T ss_pred EEEEEEcCccCCC
Confidence 9999999997764
No 2
>PF07738 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: IPR012919 The Caenorhabditis elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localises at the spindle pole body. UNC-84 and Sad1 share a common C-terminal region that is often termed the SUN (Sad1 and UNC) domain [, ]. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2 []. The SUN domain of Sun2 has been demonstrated to be in the periplasm []. ; PDB: 4DXT_A 3UNP_A 4DXR_A 4DXS_A.
Probab=99.97 E-value=5.2e-32 Score=195.73 Aligned_cols=86 Identities=52% Similarity=0.915 Sum_probs=63.7
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCC-CccccEEEEEEecCCCCCCCce
Q psy13340 1 MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMV-ADTFDMVELKILSNHGNIEYTC 79 (121)
Q Consensus 1 lEHip~~lsp~~~~sSAPKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~-~~~~~~V~l~i~SN~Gn~~YTC 79 (121)
|||+++++++ ++||||+|+|||+.+..+..+++||+|+|+.++..+|+|+|+.. ..+++.|+|+|+||||+++|||
T Consensus 49 i~h~~~~~~~---~sSapk~f~V~g~~~~~~~~~~~LG~f~y~~~~~~~QtF~l~~~~~~~~~~i~l~i~sN~G~~~ytc 125 (135)
T PF07738_consen 49 IEHVEKSIAP---FSSAPKDFEVWGSVDYPDEEWVLLGEFEYDSDGNSIQTFPLPRPPRQPVRYIKLRILSNHGNEEYTC 125 (135)
T ss_dssp EE---GGGSG----TTSB-EEEEEEESSSSTS--EEEEEEE--TTS-SEEEEE-SS--S--EEEEEEEE--BSS-SSEEE
T ss_pred EEEeccccCC---cCCCCcEEEEEEEecccccceeeeceEEEcCCcCccEeeeeccCchhcCcEEEEEEEcCCCCCceEE
Confidence 6899999997 89999999999999998777999999999999999999999997 3589999999999999999999
Q ss_pred EEEEEEecee
Q psy13340 80 LYRFRVHGNL 89 (121)
Q Consensus 80 lYR~RVHG~~ 89 (121)
||||||||+.
T Consensus 126 lyr~rVhG~~ 135 (135)
T PF07738_consen 126 LYRFRVHGES 135 (135)
T ss_dssp E-EEEEEEE-
T ss_pred EEEEEEEeeC
Confidence 9999999973
No 3
>KOG1396|consensus
Probab=98.06 E-value=4.7e-07 Score=79.38 Aligned_cols=79 Identities=24% Similarity=0.219 Sum_probs=66.2
Q ss_pred CCCCCCCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEeceeCC
Q psy13340 12 GIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAP 91 (121)
Q Consensus 12 ~~~sSAPKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~~ 91 (121)
.-.+|-||+|+|.+-.......|+.+|+|.--.. +.+|+|+++. ..+.+++++.++|.||...|+-|--+||.|..+.
T Consensus 189 e~~ss~pk~f~v~~s~~~P~~~w~~~G~f~a~N~-r~lQsF~~n~-~~wakYlKIellsHygsEfyCpvSli~VyG~tm~ 266 (530)
T KOG1396|consen 189 EHFSSPPKDFSVSISIRYPTPSWIHLGQFHARNE-RNLQSFPLNE-QKWAKYLKIELLSHYGSEFYCPVSLIRVYGKTMV 266 (530)
T ss_pred cccCCCCCceeeccccccCCccceecCcccccch-hhhcCCCCCc-hhhhhHhhhhhhhhcccccccchhhhhhhchhHH
Confidence 3578999999999887776667999999998777 5799999555 6899999999999999855555899999998764
Q ss_pred C
Q psy13340 92 S 92 (121)
Q Consensus 92 ~ 92 (121)
+
T Consensus 267 E 267 (530)
T KOG1396|consen 267 E 267 (530)
T ss_pred H
Confidence 3
No 4
>cd00057 FA58C Substituted updates: Jan 31, 2002
Probab=97.05 E-value=0.0044 Score=43.36 Aligned_cols=66 Identities=15% Similarity=0.102 Sum_probs=46.7
Q ss_pred CCCCCeEEEEEEecCCCCCceEEEE----EEE--cCCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEec
Q psy13340 15 DSAPKKFAVWGLREKYDENPTLLGE----FMY--DSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHG 87 (121)
Q Consensus 15 sSAPKdF~V~G~~~~~~~~~~~LG~----f~Y--d~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG 87 (121)
..-++.|+|.+..+. ..|..+.+ ..| ..++...+++.+.. ....++|+|.++++.| +.|| ||.|+|
T Consensus 72 ~~~~~~~~i~~s~dg--~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~-pv~aRyvRl~~~~~~~---~~~l-e~evyG 143 (143)
T cd00057 72 SEWVTSYKVQYSLDG--ETWTTYKDKGEEKVFTGNSDGSTPVTNDFPP-PIVARYIRILPTTWNG---NISL-RLELYG 143 (143)
T ss_pred cCeeEEEEEEEECCC--CCEeEEEcCCcEEEEeCCcCCCeEEEEeCCC-CEEEEEEEEEEeecCC---ccEE-EEEEcC
Confidence 445778888766553 23555553 233 33335688888877 3578999999999777 8999 999998
No 5
>PF06201 PITH: PITH domain; InterPro: IPR010400 The full-length, Txnl1, protein which is a probable component of the 32 kDa 26S proteasome, uses its C-terminal, PITH, domain to associate specifically with the 26S proteasome. PITH derives from proteasome-interacting thioredoxin domain which this entry represents [].; PDB: 1XOY_A 1WWY_A.
Probab=95.11 E-value=0.064 Score=40.26 Aligned_cols=66 Identities=21% Similarity=0.237 Sum_probs=42.3
Q ss_pred CCCCCCCeEEEEEE-ecCCCCCceEEEEEEEcC--CCCceeEEEecCC--------------CccccEEEEEEecCCCCC
Q psy13340 13 IIDSAPKKFAVWGL-REKYDENPTLLGEFMYDS--EGPTLQYFEAKMV--------------ADTFDMVELKILSNHGNI 75 (121)
Q Consensus 13 ~~sSAPKdF~V~G~-~~~~~~~~~~LG~f~Yd~--~~~~iQtF~v~~~--------------~~~~~~V~l~i~SN~Gn~ 75 (121)
+-.+|||.+.||.= ...- .|+. +..+.|++++... =.-++.+.|-|.+|+|..
T Consensus 69 ~~~~~P~~iKlf~N~~~~l----------dF~~~~~~~p~q~~~l~~~~~~~~~~~~Lk~~KFqnV~sLtif~~~n~g~~ 138 (152)
T PF06201_consen 69 DDDSAPKTIKLFINQRPNL----------DFDDAESIKPTQELELTEEDSDGGVEYPLKFVKFQNVNSLTIFFEDNQGGD 138 (152)
T ss_dssp STTTSEEEEEEEES-SS-------------CCHHCCS--SCEEE--TTTCCCT--EE--TTT-TTEEEEEEEEEEETT--
T ss_pred CCCCCCeEEEEEECCCCCc----------CccccccCCCCceEEcCccccCCceEeeeeeeccCCccEEEEEEeCCcCCC
Confidence 45899999999985 2211 1221 2246677766651 136789999999999977
Q ss_pred CCceEEEEEEece
Q psy13340 76 EYTCLYRFRVHGN 88 (121)
Q Consensus 76 ~YTClYR~RVHG~ 88 (121)
+-|-||++++.|+
T Consensus 139 ~~T~I~~i~l~G~ 151 (152)
T PF06201_consen 139 DVTRIYYIGLRGE 151 (152)
T ss_dssp SS-EESEEEEEEE
T ss_pred ccEEEEEEEEEee
Confidence 9999999999996
No 6
>PF03256 APC10: Anaphase-promoting complex, subunit 10 (APC10); InterPro: IPR004939 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. One of the subunits of the APC that is required for ubiquitination activity is APC10, a one-domain protein homologous to a sequence element, termed the DOC domain, found in several hypothetical proteins that may also mediate ubiquitination reactions, because they contain combinations of either RING finger (see PDOC00449 from PROSITEDOC), cullin (see PDOC00967 from PROSITEDOC) or HECT (see PDOC50237 from PROSITEDOC) domains [, , ]. The DOC domain consists of a beta-sandwich, in which a five-stranded antiparallel beta-sheet is packed on top of a three stranded antiparallel beta-sheet, exhibiting a 'jellyroll' fold [, ]. Proteins known to contain a DOC domain include: Eucaryotic Doc1/Apc10. Mammalian protein associated with the transcription factor Myc (PAM). Mouse runty-jerky-sterile (RJS) protein. Human HERC2, the ortholog of RJS. ; PDB: 1GQP_B 1JHJ_A.
Probab=86.43 E-value=5.2 Score=31.26 Aligned_cols=81 Identities=16% Similarity=0.097 Sum_probs=42.4
Q ss_pred CCCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCC-C--ccccEEEEEEecCCCCCCCceEEEEEEeceeCCC
Q psy13340 16 SAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMV-A--DTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPS 92 (121)
Q Consensus 16 SAPKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~-~--~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~~~ 92 (121)
=.|+.+.|.+=....+ ...+...+.+... .-....|... . ..+..|++.|++||=+..-|.|-.+||.|-....
T Consensus 95 YtPs~I~V~aG~~~~d--l~e~~~v~l~~p~-GWv~i~l~~~~~~~~r~~~iqI~I~~nhq~G~DthiR~iki~gp~~~~ 171 (193)
T PF03256_consen 95 YTPSKISVRAGNSPHD--LQEVKTVELEEPN-GWVHIPLLDNRGNPLRCFFIQIAILSNHQNGKDTHIRGIKIYGPRPSE 171 (193)
T ss_dssp GSEEEEEEEEESSTTT---EEEEEEEECC-E-EEEEEE-BSTTTSBEEEEEEEEEEEEECCC-SS-EESEEEEEEE----
T ss_pred CCceEEEEEEeCCcCc--eEEEEEEEecCCC-ccEEEEeCCCCCCcEEEEEEEEEEEecccCCCCCceeeEEEECCCCcc
Confidence 3566666655443332 2455555555411 2234455443 2 2456799999999999999999999999977765
Q ss_pred CCCCCcc
Q psy13340 93 PSPVHTY 99 (121)
Q Consensus 93 ~~~~~~~ 99 (121)
.....+.
T Consensus 172 ~~~~~~~ 178 (193)
T PF03256_consen 172 SSSANDD 178 (193)
T ss_dssp -------
T ss_pred ccccccc
Confidence 4444433
No 7
>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain. In the Dictyostelium discoideum (Slime mold) cell adhesion protein discoidin, a related domain, named discoidin I-like domain, DLD, or DS, has been found which shares a common C-terminal region of about 110 amino acids with the FA58C domain, but whose N-terminal 40 amino acids are much less conserved. Similar domains have been detected in other extracellular and membrane proteins [, , ] In coagulation factors V and VIII the repeated domains compose part of a larger functional domain which promotes binding to anionic phospholipids on the surface of platelets and endothelial cells []. The C-terminal domain of the second FA58C repeat (C2) of coagulation factor VIII has been shown to be responsible for phosphatidylserine-binding and essential for activity [, ]. It forms an amphipathic alpha-helix, which binds to the membrane []. FA58C contains two conserved cysteines in most proteins, which link the extremities of the domain by a disulphide bond [, , ]. A further disulphide bond is located near the C-terminal of the second FA58C domain in MFGM Q08431 from SWISSPROT []. +------------------------------------------------------------------------+ | +-+ | | | | | CxPLGxxQITASxxxxxRLxxxWxxxxWxxxxxxQGxxxxxxxxxxxxGNxxxxxxxxxxRxPxcxcLRxExGC 'C': conserved cysteine involved in a disulphide bond. 'c': cysteine involved in a disulphide bond in MFGM Q08431 from SWISSPROT. 'x': any amino acid. upper case letters: conserved residues. ; GO: 0007155 cell adhesion; PDB: 2J22_A 3CQO_C 1SDD_B 2VCA_A 2VC9_A 2VCC_A 2VCB_A 2J1E_A 2J7M_A 2J1A_A ....
Probab=83.83 E-value=6.9 Score=25.87 Aligned_cols=62 Identities=15% Similarity=0.162 Sum_probs=40.0
Q ss_pred CCCeEEEEEEecCCCCCceEEEEEEEc-CCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEE
Q psy13340 17 APKKFAVWGLREKYDENPTLLGEFMYD-SEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLY 81 (121)
Q Consensus 17 APKdF~V~G~~~~~~~~~~~LG~f~Yd-~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClY 81 (121)
.|+.|.|....+. ..|..+++..++ ......+...+.. ....++|+|.+++-.|...+.+|.
T Consensus 65 ~~~~~~i~~s~dg--~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~ryiri~~~~~~~~~~~~~i~ 127 (129)
T PF00754_consen 65 RPKSFKIEYSNDG--SNWTTVASQFYGNTNSGSVVTISFFP-PVKARYIRITVTSWNGNNGWVSIA 127 (129)
T ss_dssp EEEEEEEEEESSS--SSEEEEEETEEEESSSSSSEEEEEEE-EEEEEEEEEEEEEEESCSSEEEEE
T ss_pred eeeeeeeeeeccc--ccccccccceeeccCCCceEEEEeCC-CeEEEEEEEEEEEECCCCceEEEE
Confidence 7899999988665 347788775222 2333344444444 346799999998644555677665
No 8
>cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination. This model represents the single domain protein APC10, a subunit of the anaphase-promoting complex (APC), which is a multi-subunit E3 ubiquitin ligase. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a vital component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC (also known as the cyclosome), is a cell cycle-regulated E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. In mitosis, the APC initiates sister chromatid separation by ubiquitinating the anaphase inhibitor securin and triggers exit from mitosis by ubiquitinating cyclin B. The C-terminus of APC10 binds to CDC27/APC3, an APC subunit that contains multiple tetratrico peptide repeats. APC10 domains are homologous to the DOC1 domains present in the
Probab=82.32 E-value=17 Score=26.89 Aligned_cols=72 Identities=17% Similarity=0.087 Sum_probs=48.2
Q ss_pred CCCCCCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCC----CccccEEEEEEecCCCCCCCceEEEEEEec
Q psy13340 13 IIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMV----ADTFDMVELKILSNHGNIEYTCLYRFRVHG 87 (121)
Q Consensus 13 ~~sSAPKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~----~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG 87 (121)
|=+=.|+.+.|.+=....+ ...+...+.+.. ..-..+.|... ...+..|++.|++||=|..-|=|--+||+|
T Consensus 64 DeSYtP~~I~v~~G~~~~d--l~e~~~v~l~~p-~Gwv~i~l~~~~~~~~~~~~~iqi~I~~nh~nG~DthiR~iki~g 139 (139)
T cd08366 64 DESYTPSKISIRAGTSPHD--LQEVRTVELEEP-NGWVHIPLEDNRDGKPLRTFFLQIAILSNHQNGRDTHIRQIKVYG 139 (139)
T ss_pred CCCCCCEEEEEEEECCcCc--hhheEEEEcCCC-CEEEEEEccCCCCCCeeEEEEEEEEEecccCCCCCcceeeeEecC
Confidence 4456777777776554433 234555555544 22344555542 256779999999999999999999999987
No 9
>PF03561 Allantoicase: Allantoicase repeat; InterPro: IPR015908 Allantoicase (also known as allantoate amidinohydrolase) is involved in purine degradation, facilitating the utilization of purines as secondary nitrogen sources under nitrogen-limiting conditions. While purine degradation converges to uric acid in all vertebrates, its further degradation varies from species to species. Uric acid is excreted by birds, reptiles, and some mammals that do not have a functional uricase gene, whereas other mammals produce allantoin. Amphibians and microorganisms produce ammonia and carbon dioxide using the uricolytic pathway. Allantoicase performs the second step in this pathway catalyzing the conversion of allantoate into ureidoglycolate and urea. allantoate + H(2)0 = (S)-ureidoglycolate + urea The structure of allantoicase is best described as being composed of two repeats (the allantoicase repeats: AR1 and AR2), which are connected by a flexible linker. The crystal structure, resolved at 2.4A resolution, reveals that AR1 has a very similar fold to AR2, both repeats being jelly-roll motifs, composed of four-stranded and five-stranded antiparallel beta-sheets []. Each jelly-roll motif has two conserved surface patches that probably constitute the active site []. The mammalian proteins matched by this entry are thought to be non-functional as mammals do not appear to possess allantoicase activity [].; GO: 0004037 allantoicase activity; PDB: 1O59_A 1SG3_A.
Probab=73.07 E-value=29 Score=26.23 Aligned_cols=66 Identities=23% Similarity=0.187 Sum_probs=39.7
Q ss_pred CCCCCeEEEEEEecC----------CCCCceEEEEEEEcCCCCceeEEEecCC-CccccEEEEEEecCCCCCCCceEEEE
Q psy13340 15 DSAPKKFAVWGLREK----------YDENPTLLGEFMYDSEGPTLQYFEAKMV-ADTFDMVELKILSNHGNIEYTCLYRF 83 (121)
Q Consensus 15 sSAPKdF~V~G~~~~----------~~~~~~~LG~f~Yd~~~~~iQtF~v~~~-~~~~~~V~l~i~SN~Gn~~YTClYR~ 83 (121)
...|..++|.|+... .+..|..|=..+-=. ....+.|.++.. ..++..|+|.|-- -=+|-||
T Consensus 76 GN~P~~~sv~~~~~~~~~~~~~~~~~~~~W~~llp~~~l~-~~~~h~f~~~~~~~~~~THvRl~i~P------DGGIaRl 148 (152)
T PF03561_consen 76 GNYPPSVSVEGAYLPDDDDPEIIELDSEEWVELLPRTKLG-PDKRHYFKLEINNEKPFTHVRLNIYP------DGGIARL 148 (152)
T ss_dssp SSB-SEEEEEEE--SS----S---TT-TTEEEEEEEEE---TT-EEEEE-TECECS-BSEEEEEEES------S-EESEE
T ss_pred CCCCCEEEEEEEEcCCCcccccccccCCCceEeecceEcC-CCcccEeccccCCCCceeEEEEEEeC------CCCEEEE
Confidence 457889999998632 233566555544322 334688886323 6799999999954 4468899
Q ss_pred EEec
Q psy13340 84 RVHG 87 (121)
Q Consensus 84 RVHG 87 (121)
||+|
T Consensus 149 Rv~G 152 (152)
T PF03561_consen 149 RVYG 152 (152)
T ss_dssp EEEE
T ss_pred EEcC
Confidence 9998
No 10
>PF14652 DUF4457: Domain of unknown function (DUF4457)
Probab=70.42 E-value=4 Score=34.05 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=23.7
Q ss_pred ccccEEEEEEecCCCCCCCceEEEEEEece
Q psy13340 59 DTFDMVELKILSNHGNIEYTCLYRFRVHGN 88 (121)
Q Consensus 59 ~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~ 88 (121)
.....++|+|+||||.+.|-=|--+.++..
T Consensus 186 p~g~~l~~~ilStWGd~~yvGLngiElfD~ 215 (329)
T PF14652_consen 186 PCGFVLQIEILSTWGDPHYVGLNGIELFDE 215 (329)
T ss_pred ccceEEEEEEeeccCCcceecccceEEEcC
Confidence 345789999999999987777777777643
No 11
>PF14652 DUF4457: Domain of unknown function (DUF4457)
Probab=67.12 E-value=4.1 Score=33.97 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=23.5
Q ss_pred EEEEecCCCCCCCceEEEEEEeceeCC
Q psy13340 65 ELKILSNHGNIEYTCLYRFRVHGNLAP 91 (121)
Q Consensus 65 ~l~i~SN~Gn~~YTClYR~RVHG~~~~ 91 (121)
+|+++||||++.|-.|=-+-|.|..-.
T Consensus 1 ~l~llsnWG~~~~iGLTgie~~d~~~~ 27 (329)
T PF14652_consen 1 QLELLSNWGDPHYIGLTGIEVLDKNGQ 27 (329)
T ss_pred CcEEEecCCCCCeEecceEEEEcCCCC
Confidence 478999999999999999999887654
No 12
>PF06588 Muskelin_N: Muskelin N-terminus; InterPro: IPR010565 This entry represents the N-terminal region of muskelin and is found in conjunction with several IPR006652 from INTERPRO repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1 [].
Probab=59.27 E-value=8.4 Score=30.69 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=35.3
Q ss_pred eeEEEecCC-C------ccccEEEEEEecCCCCCCCceEEEEEEeceeCC
Q psy13340 49 LQYFEAKMV-A------DTFDMVELKILSNHGNIEYTCLYRFRVHGNLAP 91 (121)
Q Consensus 49 iQtF~v~~~-~------~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~~ 91 (121)
--||.|... . .++++|++.=+.-||..-..+|.=|.++|...+
T Consensus 101 ~Etf~l~~~~~~~~~~~fP~rYIKIvPL~swGpsFNfSIWyVeL~Gi~dp 150 (199)
T PF06588_consen 101 PETFNLKHKTNNGIENYFPCRYIKIVPLQSWGPSFNFSIWYVELSGIDDP 150 (199)
T ss_pred CceEEeEEecCCcccceeeeeeeEEechhhcCCCCceEEEEEEEeccCCH
Confidence 478888766 2 388999999999999766778999999998654
No 13
>PRK13257 allantoicase; Provisional
Probab=59.11 E-value=46 Score=28.45 Aligned_cols=67 Identities=22% Similarity=0.231 Sum_probs=44.4
Q ss_pred CCCCCeEEEEEEecCCCC---------CceE-EEEEEEcCCCCceeEEE--ecCCCccccEEEEEEecCCCCCCCceEEE
Q psy13340 15 DSAPKKFAVWGLREKYDE---------NPTL-LGEFMYDSEGPTLQYFE--AKMVADTFDMVELKILSNHGNIEYTCLYR 82 (121)
Q Consensus 15 sSAPKdF~V~G~~~~~~~---------~~~~-LG~f~Yd~~~~~iQtF~--v~~~~~~~~~V~l~i~SN~Gn~~YTClYR 82 (121)
-.+|..++|.|..-+... .|.. |+.-.-.. ...+.|. +.. ..++..|+|.|-=--| |-|
T Consensus 257 GN~P~~~si~~~~~~~~~~~~~~~~~~~W~~Llp~tkl~p--d~~h~F~~~~~~-~~~~THvRl~I~PDGG------vsR 327 (336)
T PRK13257 257 GNFPDRCSLQAAYVEGGTDSSLITQSMFWPELLPEQKLQM--DTRHRFEAELAA-LGPVTHVRLNIFPDGG------VSR 327 (336)
T ss_pred CCCCCeEEEEEEecCCCcccccccccCcCeEcccccccCC--CcEeeecccccC-CCceEEEEEEEECCCC------cee
Confidence 457899999998642111 2332 33333222 2357787 544 5689999999977666 789
Q ss_pred EEEeceeC
Q psy13340 83 FRVHGNLA 90 (121)
Q Consensus 83 ~RVHG~~~ 90 (121)
|||+|...
T Consensus 328 lRv~G~~~ 335 (336)
T PRK13257 328 LRLWGKLA 335 (336)
T ss_pred EEeeeEec
Confidence 99999875
No 14
>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs. This model represents the APC10/DOC1-like domain present in the uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) of Mus musculus. Members of this family contain EF-hand, APC10, CUB, and zinc finger ZZ-type domains. ZZEF1-like APC10 domains are homologous to the APC10 subunit/DOC1 domains present in E3 ubiquitin ligases, which mediate substrate ubiquitination (or ubiquitylation), and are components of the ubiquitin-26S proteasome pathway for selective proteolytic degradation.
Probab=55.24 E-value=83 Score=23.26 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=26.7
Q ss_pred CccccEEEEEEecCCCCCCCceEEEEEEec
Q psy13340 58 ADTFDMVELKILSNHGNIEYTCLYRFRVHG 87 (121)
Q Consensus 58 ~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG 87 (121)
...+-.|++.|++||=|..-|=|--+||.|
T Consensus 102 ~~~~~~iqI~I~~nhqnG~DthIRgiki~G 131 (131)
T cd08667 102 NISYLVVQINIKRCHSDGCDTRIHGLKTIG 131 (131)
T ss_pred ceEEEEEEEEeHHhccCCccceeeEEEEcC
Confidence 356779999999999999999999999987
No 15
>PF12386 Peptidase_C71: Pseudomurein endo-isopeptidase Pei; InterPro: IPR022119 This peptidase has the catalytic triad C-H-D at the C-terminal end, a triad similar to that in thiol proteases and animal transglutaminases. It catalyses the in vitro lysis of M. marburgensis cells under reducing conditions and exhibits characteristics of metal-activated peptidases.
Probab=53.27 E-value=26 Score=26.39 Aligned_cols=42 Identities=24% Similarity=0.278 Sum_probs=31.2
Q ss_pred eeEE-EecCC-CccccEEEEEEecCCCCCCCceEEEEEEeceeCCC
Q psy13340 49 LQYF-EAKMV-ADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPS 92 (121)
Q Consensus 49 iQtF-~v~~~-~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~~~ 92 (121)
.|-| +|-.. ...++++-+|++-|=| .+.|-||+||-|....+
T Consensus 61 ~Qlf~~v~~~lGY~Vq~~HVk~rc~~g--~wygH~~LRv~~~~~~~ 104 (142)
T PF12386_consen 61 CQLFYRVIESLGYDVQFEHVKCRCNSG--KWYGHYRLRVKHKELTS 104 (142)
T ss_pred HHHHHHHHHhcCceEEEEEEEEEecCC--ceeeEEEEEecceeccC
Confidence 3444 33333 4577888888888877 58899999999988775
No 16
>TIGR02961 allantoicase allantoicase. A different but similarly named enzyme, allantoate amidohydrolase (EC 3.5.3.9), simultaneously breaks down the urea to ammonia and carbon dioxide.
Probab=50.03 E-value=46 Score=28.29 Aligned_cols=71 Identities=21% Similarity=0.251 Sum_probs=45.6
Q ss_pred CCCCeEEEEEEecCC--------CCCceEEEEEEEcCCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEec
Q psy13340 16 SAPKKFAVWGLREKY--------DENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHG 87 (121)
Q Consensus 16 SAPKdF~V~G~~~~~--------~~~~~~LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG 87 (121)
..|-.++|-|+.++. +..|..|-.=+ ...+.....|+|.. ..++..|+|.|-=--| |=||||+|
T Consensus 87 N~p~~~siea~~~~~~~~~~~~~~~~W~ell~~t-~l~~~~~h~f~v~~-~~~~THvRLni~PDGG------iaRlRvyG 158 (322)
T TIGR02961 87 NYPPAVSIEACLSPEPSPEILLDSTEWVELLPRT-ELGPSQHHYFEVSS-KQRFTHIRLNIYPDGG------IARLRVYG 158 (322)
T ss_pred CCCCeEEEEEEeCCCCCccccccCCCCcEeeccc-ccCCCceeeEEcCC-CCceEEEEEEEECCCC------eeeEEeec
Confidence 467778888876431 11233222111 11234567888865 5789999999976666 77999999
Q ss_pred eeCCCCC
Q psy13340 88 NLAPSPS 94 (121)
Q Consensus 88 ~~~~~~~ 94 (121)
++..+..
T Consensus 159 ~~~~d~~ 165 (322)
T TIGR02961 159 IVVPDWS 165 (322)
T ss_pred cccCCcc
Confidence 9988654
No 17
>PRK13257 allantoicase; Provisional
Probab=49.97 E-value=46 Score=28.45 Aligned_cols=71 Identities=25% Similarity=0.275 Sum_probs=45.4
Q ss_pred CCCCeEEEEEEecCC-----CCCceEEEEEEEcCCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEeceeC
Q psy13340 16 SAPKKFAVWGLREKY-----DENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLA 90 (121)
Q Consensus 16 SAPKdF~V~G~~~~~-----~~~~~~LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~ 90 (121)
..|..++|.|...+. +..|..|-.=+ ...+.....|.|.. ..++..|+|.|-=--| |=||||||+..
T Consensus 102 N~p~~~siea~~~~~~~~~~~~~W~ellp~~-~l~p~~~h~f~v~~-~~~~THvRLniyPDGG------vaRlRv~G~~~ 173 (336)
T PRK13257 102 NYPPAASVEACYVPDGYPSDAAEWTEIVPAT-TLQGDSHHYFEVDD-ARRFTHVRLNIYPDGG------VARLRVYGEPQ 173 (336)
T ss_pred CCCCeEEEEEEecCCCCCccCCCceEecccc-ccCCCcEeeEEcCC-CCceEEEEEEEECCCC------eeEEEEeeeec
Confidence 467778888776411 11233322111 11234567888865 5689999999966655 77999999998
Q ss_pred CCCC
Q psy13340 91 PSPS 94 (121)
Q Consensus 91 ~~~~ 94 (121)
.+..
T Consensus 174 ~d~~ 177 (336)
T PRK13257 174 PDWA 177 (336)
T ss_pred CChh
Confidence 7644
No 18
>KOG0908|consensus
Probab=48.59 E-value=86 Score=26.32 Aligned_cols=75 Identities=25% Similarity=0.346 Sum_probs=49.5
Q ss_pred CCCCCCeEEEEEEecCC-------CCCceEEEEEEE-cCCCC--ceeEEEecCCCccccEEEEEEecCCCCCCCceEEEE
Q psy13340 14 IDSAPKKFAVWGLREKY-------DENPTLLGEFMY-DSEGP--TLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRF 83 (121)
Q Consensus 14 ~sSAPKdF~V~G~~~~~-------~~~~~~LG~f~Y-d~~~~--~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~ 83 (121)
-..+||...|+-..... .-++..+-+|+= +..+. ++-.|++++ ++.|.|-|.+|-|.++-|=|-++
T Consensus 187 ~~~~Pk~vkifin~pr~~~F~~a~~f~ptQ~lel~e~~~~~~~V~lryvkfqn----V~sv~iFiq~n~gg~evtri~~~ 262 (288)
T KOG0908|consen 187 NPLGPKTVKIFINQPRTMDFENAESFEPTQLLELTELDLQGLPVPLRYVKFQN----VNSVQIFIQSNQGGEEVTRISKL 262 (288)
T ss_pred CCCCCeeEEEEecCccccCcccccccCcccccchhhhhccCceEEeeeeeEEE----eeEEEEEEecCCCCcccceeeee
Confidence 46789999988764431 112222333221 11221 333445544 58888999999999999999999
Q ss_pred EEeceeCCC
Q psy13340 84 RVHGNLAPS 92 (121)
Q Consensus 84 RVHG~~~~~ 92 (121)
-+.|.|...
T Consensus 263 ~~~GsPv~~ 271 (288)
T KOG0908|consen 263 GLFGSPVPT 271 (288)
T ss_pred eeccccCCC
Confidence 999999875
No 19
>PF14958 DUF4506: Domain of unknown function (DUF4506)
Probab=47.84 E-value=1.1e+02 Score=22.64 Aligned_cols=74 Identities=22% Similarity=0.413 Sum_probs=46.0
Q ss_pred CCeEEEE-EEecCCCCCceEEEEEEEcCCC-CceeEEEecCC-CccccEEEEEEecCCCCCCCceEEEEEEeceeCCCCC
Q psy13340 18 PKKFAVW-GLREKYDENPTLLGEFMYDSEG-PTLQYFEAKMV-ADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPSPS 94 (121)
Q Consensus 18 PKdF~V~-G~~~~~~~~~~~LG~f~Yd~~~-~~iQtF~v~~~-~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~~~~~ 94 (121)
=|.+||+ |-.+++-. ..-|++..+.+. ..+.-|.-.-. ..+...+.||++|= | +--|+|-.+|+..+...+.
T Consensus 37 AR~~EvY~g~~~EY~~--T~rGe~v~~~~~~~~~~lY~~~l~le~~~~~~~iK~lSl-~--~k~~vy~~~i~v~~~~~~~ 111 (138)
T PF14958_consen 37 ARNMEVYVGQSEEYCG--TSRGELVDEDSEEENIILYKKDLKLESPTSECKIKFLSL-G--EKQCVYGSKIVVHLRPVSA 111 (138)
T ss_pred cCEEEEEECCCCceee--EcCcEEecCCCccccceEEEEEEEcCCCccEEEEEEEec-C--CccEEEEEEEEEEecCCCC
Confidence 3567777 43344322 355777774322 22233322222 35788999999998 5 5799999999998886544
Q ss_pred CC
Q psy13340 95 PV 96 (121)
Q Consensus 95 ~~ 96 (121)
-.
T Consensus 112 ~~ 113 (138)
T PF14958_consen 112 NS 113 (138)
T ss_pred Cc
Confidence 43
No 20
>cd08665 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in CUL7, a subunit of the SCF-ROC1-like E3 Ubiquitin (Ub) ligase complex, which mediates substrate ubiquitination (or ubiquitylation), and is a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling the SCF-ROC1-like E3 Ub ligase complex consisting of the adapter protein Skp1, CUL7, the WD40 repeat-containing F-box Fbw8 (also known as Fbx29), and ROC1 (RING-box protein 1). CUL7 is a large protein with a C-terminal cullin domain that binds ROC1 and additional domains, including an APC10/DOC1 domain. While the Fbw8 protein is responsible for substrate protein recognition, the ROC1 RING domain recruits an Ub-charged E2 Ub-conjugating enzyme for substrate ubiqui
Probab=46.42 E-value=26 Score=26.03 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=24.0
Q ss_pred cEEEEEEecCCCCCCCceEEEEEEec
Q psy13340 62 DMVELKILSNHGNIEYTCLYRFRVHG 87 (121)
Q Consensus 62 ~~V~l~i~SN~Gn~~YTClYR~RVHG 87 (121)
..|++.|++||=+..-|=|--+||+|
T Consensus 106 ~~iqI~I~~nhqnG~DthIRgikI~G 131 (131)
T cd08665 106 PIIQIRIKRCQQGGIDTRVRGLEILG 131 (131)
T ss_pred eEEEEEEhhhcccCccceeeEEEecC
Confidence 48999999999999999999999987
No 21
>KOG3437|consensus
Probab=45.81 E-value=40 Score=26.60 Aligned_cols=34 Identities=29% Similarity=0.347 Sum_probs=29.0
Q ss_pred cccEEEEEEecCCCCCCCceEEEEEEeceeCCCC
Q psy13340 60 TFDMVELKILSNHGNIEYTCLYRFRVHGNLAPSP 93 (121)
Q Consensus 60 ~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~~~~ 93 (121)
.+-.|++.|.+||-|..-|-+--+||++-....+
T Consensus 130 r~~~iqi~i~~NHq~GkDthvR~iri~~p~~e~~ 163 (184)
T KOG3437|consen 130 RCFMIQIAILSNHQNGKDTHVRHIRIYAPSIEGP 163 (184)
T ss_pred EEEEEEEEeecccccCccceeEEEEEecccccCc
Confidence 5568999999999999999999999999765443
No 22
>PF10807 DUF2541: Protein of unknown function (DUF2541); InterPro: IPR020240 This entry represents proteins found in the Gammaproteobacteria that have no known function.
Probab=43.23 E-value=1.4e+02 Score=22.42 Aligned_cols=55 Identities=16% Similarity=0.260 Sum_probs=38.7
Q ss_pred eEEE--EEEEcCCCCceeEEEecCC---CccccEEEEEEecCCCCCCCceEEEEEEeceeCCCC
Q psy13340 35 TLLG--EFMYDSEGPTLQYFEAKMV---ADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPSP 93 (121)
Q Consensus 35 ~~LG--~f~Yd~~~~~iQtF~v~~~---~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~~~~ 93 (121)
+.|- .-.|.......|+|+++.. ....+.+.| .|--|+ --|+-++-|+|....+.
T Consensus 64 i~L~~a~v~Fk~~~g~s~~l~~~~~ikeg~tT~Wi~i--~sdn~n--kRCVskI~~~G~t~nSS 123 (134)
T PF10807_consen 64 IQLSGATVYFKNANGESQTLNFPRSIKEGQTTDWINI--NSDNDN--KRCVSKITFSGHTVNSS 123 (134)
T ss_pred eEeeeeEEEEEeccccceEEcccccccCCCccCcEEe--cCCCCc--ceeeeEEEEEeeeccCc
Confidence 4454 4567765556799999887 345666544 455564 78999999999988764
No 23
>PF15532 Toxin_53: Putative toxin 53
Probab=41.92 E-value=24 Score=25.39 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=17.2
Q ss_pred cEEEEEEecCCCCCCCceEEEEEEeceeC
Q psy13340 62 DMVELKILSNHGNIEYTCLYRFRVHGNLA 90 (121)
Q Consensus 62 ~~V~l~i~SN~Gn~~YTClYR~RVHG~~~ 90 (121)
..++++-..+ |. -||+|||+.-.
T Consensus 23 ~~~k~kW~~~-g~-----tyrvRvH~~Dp 45 (102)
T PF15532_consen 23 EGFKFKWTDG-GK-----TYRVRVHPADP 45 (102)
T ss_pred ccceEEeecC-Cc-----eEEEEecCCCC
Confidence 5667777776 53 49999998765
No 24
>PF12306 PixA: Inclusion body protein; InterPro: IPR021087 This entry represents bacterial proteins that are typically between 173 and 191 amino acids in length. PixA is thought to be specifically produced in Xenorhabdus nematophila. It is an inclusion body protein []. This signature also identifies AidA.
Probab=39.53 E-value=41 Score=25.50 Aligned_cols=29 Identities=31% Similarity=0.474 Sum_probs=26.6
Q ss_pred cccEEEEEEecCCCCCCCce-EEEEEEece
Q psy13340 60 TFDMVELKILSNHGNIEYTC-LYRFRVHGN 88 (121)
Q Consensus 60 ~~~~V~l~i~SN~Gn~~YTC-lYR~RVHG~ 88 (121)
.=+.|++|..|=-++.+|+| ||+|.-.|.
T Consensus 64 ~GD~Irwr~tSls~n~~y~v~ly~~~~~~~ 93 (172)
T PF12306_consen 64 VGDTIRWRATSLSGNSEYSVILYKFVKSSG 93 (172)
T ss_pred CCCEEEEEEEeeccCCceeEEEEEeeccCC
Confidence 44899999999999999999 999999988
No 25
>smart00231 FA58C Coagulation factor 5/8 C-terminal domain, discoidin domain. Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
Probab=37.38 E-value=1.3e+02 Score=20.94 Aligned_cols=35 Identities=11% Similarity=-0.010 Sum_probs=22.2
Q ss_pred ceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEec
Q psy13340 48 TLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHG 87 (121)
Q Consensus 48 ~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG 87 (121)
.+++-.+.. ....++|+|..+ .|- ..-| .||-|.|
T Consensus 104 ~~~~~~~~~-~v~ARyvRi~p~-~~~--~~~~-~r~ElyG 138 (139)
T smart00231 104 TVVVNEFPP-PIVARYIRILPT-GWN--GNII-LRVELLG 138 (139)
T ss_pred ceEEEecCC-CEEEEEEEEEEe-EcC--CCcE-EEEEEEc
Confidence 344444444 235789999999 453 2445 5999987
No 26
>PRK13797 putative bifunctional allantoicase/OHCU decarboxylase; Provisional
Probab=32.21 E-value=2.3e+02 Score=25.64 Aligned_cols=70 Identities=21% Similarity=0.291 Sum_probs=45.8
Q ss_pred CCCCCeEEEEEEecCCC---------CCce-EEEEEEEcCCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEE
Q psy13340 15 DSAPKKFAVWGLREKYD---------ENPT-LLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFR 84 (121)
Q Consensus 15 sSAPKdF~V~G~~~~~~---------~~~~-~LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~R 84 (121)
...|..++|.|..-+.. ..|+ +|+.-.-. +.....|.+.. ...+..|+|.|-=--| |-|||
T Consensus 258 GN~P~~~si~a~~~~~~~~~~~~~~~~~W~~llp~~~l~--~~~~h~f~~~~-~~~~THvrl~i~PDGG------vsRlR 328 (516)
T PRK13797 258 GNAPRAVALWAADAPDLLDPDDLAAITEWRPLLPRTRVQ--PNTRHLFDLEV-PVQATHVRVDAIPDGG------LARLR 328 (516)
T ss_pred CCCCCeEEEEEEecCCCCchhhhccCCCceEcCCCcccC--CCceeeeecCC-CCCceEEEEEEECCCC------eeeEE
Confidence 35788889988863311 1233 33322222 23467888765 4578999999966655 78999
Q ss_pred EeceeCCCC
Q psy13340 85 VHGNLAPSP 93 (121)
Q Consensus 85 VHG~~~~~~ 93 (121)
|+|.+.+..
T Consensus 329 v~G~~~~~~ 337 (516)
T PRK13797 329 LTGAPTRSG 337 (516)
T ss_pred Eeeeeccch
Confidence 999988654
No 27
>PF12134 PRP8_domainIV: PRP8 domain IV core; InterPro: IPR021983 This domain is found in eukaryotes, and is about 20 amino acids in length. It is found associated with PF10597 from PFAM, PF10596 from PFAM, PF10598 from PFAM, PF08083 from PFAM, PF08082 from PFAM, PF01398 from PFAM, PF08084 from PFAM. There is a conserved LILR sequence motif. The domain is a selenomethionine domain in a subunit of the spliceosome. The function of PRP8 domain IV is believed to be interaction with the splicosomal core. ; PDB: 3E66_A 3E9P_A 3SBT_A 3E9O_A 3SBG_A 3LRU_A 3E9L_A 3ENB_A.
Probab=31.46 E-value=14 Score=30.03 Aligned_cols=14 Identities=29% Similarity=0.603 Sum_probs=11.2
Q ss_pred CCceEEEEEEecee
Q psy13340 76 EYTCLYRFRVHGNL 89 (121)
Q Consensus 76 ~YTClYR~RVHG~~ 89 (121)
+-||+||+.+|-..
T Consensus 22 DDtnvYrvt~h~t~ 35 (231)
T PF12134_consen 22 DDTNVYRVTIHKTF 35 (231)
T ss_dssp EETTSSEEEEEE-T
T ss_pred ecCceEEEEEEeec
Confidence 57999999999654
No 28
>PRK10154 hypothetical protein; Provisional
Probab=31.40 E-value=1.5e+02 Score=22.30 Aligned_cols=51 Identities=14% Similarity=0.265 Sum_probs=35.6
Q ss_pred EEEEcCCCCceeEEEecCC---CccccEEEEEEecCCCCCCCceEEEEEEeceeCCCC
Q psy13340 39 EFMYDSEGPTLQYFEAKMV---ADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPSP 93 (121)
Q Consensus 39 ~f~Yd~~~~~iQtF~v~~~---~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~~~~ 93 (121)
.+.|.......|++.+... ....+.+.| -|.-| .--|+-++-|+|....+.
T Consensus 70 ~V~F~~~ng~s~tl~f~~~lk~~q~T~W~~~--~~~~~--~kRCV~kI~v~G~s~~Ss 123 (134)
T PRK10154 70 SVYFKAARSASQSLNIPSEIKEGQTTDWINI--NSDND--NKRCVSKITFSGHTVNSS 123 (134)
T ss_pred EEEEeccCCCceEEecchhhccCCccccEEc--cCCcc--ccceeeEEEEEecccCCc
Confidence 3667765556799998887 345555544 23333 478999999999987754
No 29
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=29.18 E-value=1.5e+02 Score=19.19 Aligned_cols=49 Identities=20% Similarity=0.231 Sum_probs=29.1
Q ss_pred EEEcCCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEece
Q psy13340 40 FMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGN 88 (121)
Q Consensus 40 f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~ 88 (121)
-.||..|..+.++.+.....-...+.+-=+.+-|++--.=.|+|||...
T Consensus 30 ~I~d~~G~~V~t~~~~~~~~G~~~~~WdG~d~~G~~~~~G~Y~~~v~a~ 78 (81)
T PF13860_consen 30 TIYDSNGQVVRTISLGSQSAGEHSFTWDGKDDDGNPVPDGTYTFRVTAT 78 (81)
T ss_dssp EEEETTS-EEEEEEEEECSSEEEEEEE-SB-TTS-B--SEEEEEEEEEE
T ss_pred EEEcCCCCEEEEEEcCCcCCceEEEEECCCCCCcCCCCCCCEEEEEEEE
Confidence 4577778777777776543333455555557778777777899998765
No 30
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=27.89 E-value=52 Score=21.87 Aligned_cols=12 Identities=33% Similarity=0.578 Sum_probs=8.7
Q ss_pred EEEEEEeceeCC
Q psy13340 80 LYRFRVHGNLAP 91 (121)
Q Consensus 80 lYR~RVHG~~~~ 91 (121)
+|+|.|.|....
T Consensus 36 ~ykV~i~~~~~~ 47 (80)
T PF14709_consen 36 LYKVVIPGLEYP 47 (80)
T ss_pred EEEEEEcCCCCC
Confidence 578888887764
No 31
>TIGR02961 allantoicase allantoicase. A different but similarly named enzyme, allantoate amidohydrolase (EC 3.5.3.9), simultaneously breaks down the urea to ammonia and carbon dioxide.
Probab=27.53 E-value=2.7e+02 Score=23.73 Aligned_cols=65 Identities=22% Similarity=0.243 Sum_probs=41.7
Q ss_pred CCCCCeEEEEEEecCCCC---------Cce-EEEEEEEcCCCCceeEEE--ecCCCccccEEEEEEecCCCCCCCceEEE
Q psy13340 15 DSAPKKFAVWGLREKYDE---------NPT-LLGEFMYDSEGPTLQYFE--AKMVADTFDMVELKILSNHGNIEYTCLYR 82 (121)
Q Consensus 15 sSAPKdF~V~G~~~~~~~---------~~~-~LG~f~Yd~~~~~iQtF~--v~~~~~~~~~V~l~i~SN~Gn~~YTClYR 82 (121)
-..|..++|.|..-+... .|. +|..-.-. +...+.|. |.. ..++..|+|.|-=--| |-|
T Consensus 246 GN~P~~~si~a~~~~~~~~~~~~~~~~~W~~llp~t~l~--~~~~h~f~~~~~~-~~~~THvRlnI~PDGG------vsR 316 (322)
T TIGR02961 246 GNYPDSCSLQAADLEGGEDEQLITQSMFWVELLPRTKLG--PDTEHVFESSLAA-SGPVTHVRLNIIPDGG------VSR 316 (322)
T ss_pred CCCCCeEEEEEEeCCCCCchhhhccCCCceEcccccccC--CCcEeeecccccC-CCceEEEEEEEECCCC------eee
Confidence 357888888887643211 233 23333222 23467786 433 5689999999976666 789
Q ss_pred EEEece
Q psy13340 83 FRVHGN 88 (121)
Q Consensus 83 ~RVHG~ 88 (121)
+||+|.
T Consensus 317 lRv~G~ 322 (322)
T TIGR02961 317 LRLWGR 322 (322)
T ss_pred EEEeeC
Confidence 999995
No 32
>PF00844 Gemini_coat: Geminivirus coat protein/nuclear export factor BR1 family; InterPro: IPR000263 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into 2 subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. It has been shown that the 104 N-terminal amino acids of the Maize streak virus coat protein bind DNA non-specifically [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=27.31 E-value=47 Score=26.43 Aligned_cols=31 Identities=13% Similarity=0.025 Sum_probs=22.6
Q ss_pred EEEEEEecCCCCCCCceEEEEEEeceeCCCC
Q psy13340 63 MVELKILSNHGNIEYTCLYRFRVHGNLAPSP 93 (121)
Q Consensus 63 ~V~l~i~SN~Gn~~YTClYR~RVHG~~~~~~ 93 (121)
...+=...+.-..+|||||++++-|....+.
T Consensus 74 ~p~~G~~~~~R~~~~ikl~~l~~~G~v~~~~ 104 (244)
T PF00844_consen 74 YPTRGKGEPNRSRSYIKLKSLRFKGTVWIDR 104 (244)
T ss_pred eeceecCCCcEEccEEEEEEEEEEEEEEecc
Confidence 3344444555556899999999999988763
No 33
>smart00026 EPEND Ependymins. Ependymins are the predominant proteins in the cerebrospinal fluid (CSF) of teleost fish. They have been implicated in the neurochemistry of memory and neuronal regeneration. They are glycoproteins of about 200 amino acids that can bind calcium. Four cysteines are conserved that probably form disulfide bonds.
Probab=27.18 E-value=2.7e+02 Score=21.96 Aligned_cols=37 Identities=24% Similarity=0.271 Sum_probs=23.1
Q ss_pred CCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEE
Q psy13340 17 APKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFE 53 (121)
Q Consensus 17 APKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~ 53 (121)
||..++---...+........|.|.||..++.+...+
T Consensus 5 sP~~~eg~~~v~~~~~~~~a~g~~sYD~~nkr~R~~E 41 (191)
T smart00026 5 SPPLTSGTMKVASTGGHDLASGEFSYDSKAKKLRFVE 41 (191)
T ss_pred CchhceeEEEEEeCCCceEEEEEEEeccCCCEEEEEe
Confidence 4555544333444344356889999999997774443
No 34
>PRK13797 putative bifunctional allantoicase/OHCU decarboxylase; Provisional
Probab=27.05 E-value=1.7e+02 Score=26.45 Aligned_cols=42 Identities=24% Similarity=0.455 Sum_probs=31.1
Q ss_pred CceeEEEecCCC-ccccEEEEEEecCCCCCCCceEEEEEEeceeCCCCC
Q psy13340 47 PTLQYFEAKMVA-DTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPSPS 94 (121)
Q Consensus 47 ~~iQtF~v~~~~-~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~~~~~ 94 (121)
.....|.|.... .++-.|+|.|-=--| |=||||+|+..++..
T Consensus 136 ~~~h~f~~~~~~~~~~THvRlni~PDGG------iaRlRv~G~~~~~~~ 178 (516)
T PRK13797 136 DAVNVLPVASSGRLRITHLRLTIHPDGG------VARLRVHGTVVPDPR 178 (516)
T ss_pred CceeeEEcCCCCcceeeEEEEEEecCCC------eeEEEEeccccCCcc
Confidence 456788886642 235899999966655 779999999888644
No 35
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=26.83 E-value=2.2e+02 Score=19.70 Aligned_cols=38 Identities=16% Similarity=0.124 Sum_probs=25.5
Q ss_pred ceEEEEEEEcCCCCceeEEEecCC--CccccEEEEEEecCCCC
Q psy13340 34 PTLLGEFMYDSEGPTLQYFEAKMV--ADTFDMVELKILSNHGN 74 (121)
Q Consensus 34 ~~~LG~f~Yd~~~~~iQtF~v~~~--~~~~~~V~l~i~SN~Gn 74 (121)
+..||.+. ....+.++|.|+.. +.. +.|.+.+.++-|+
T Consensus 71 G~~~G~~~--~~~g~q~tf~~p~~il~~~-n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 71 GWFLGSYW--PGIGPQTTFSVPAGILKYG-NNVLVVLWDNMGH 110 (111)
T ss_dssp TEEEEEEE--TTTECCEEEEE-BTTBTTC-EEEEEEEEE-STT
T ss_pred CEEeeeec--CCCCccEEEEeCceeecCC-CEEEEEEEeCCCC
Confidence 47899976 44345699999996 333 7787777777765
No 36
>PF09458 H_lectin: H-type lectin domain; InterPro: IPR019019 The H-type lectin domain is a unit of six beta chains, combined into a homo-hexamer. It is involved in self/non-self recognition of cells, through binding with carbohydrates []. It is sometimes found in association with the C-terminal domain of coagulation factor F5/8 (IPR000421 from INTERPRO). ; GO: 0005529 sugar binding, 0007155 cell adhesion; PDB: 2CGY_A 2CGZ_A 2CCV_A 2CE6_A 2VME_B 2VMC_A 2VMD_A 2VM9_A 2W94_A 2WN3_C ....
Probab=24.97 E-value=1.8e+02 Score=18.05 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=28.7
Q ss_pred eEEEEEEEcCCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEe
Q psy13340 35 TLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVH 86 (121)
Q Consensus 35 ~~LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVH 86 (121)
+.+|--.+|.+......|.+...+..-....+++.+ ||+ +++|+++|.
T Consensus 19 V~~~i~~~d~~~~~~~~~~~~v~~Vt~~gF~i~~~~-~~~---~~~~~~~v~ 66 (72)
T PF09458_consen 19 VIVSINGLDFDSSQNIRFQVQVSNVTTTGFTIQIQT-WSD---SQIYSLKVS 66 (72)
T ss_dssp EEEEEEEEEE-BTTEEEEEEEEESEESSEEEEEEEE--TT----EEEEEEEE
T ss_pred EEEEEEEEEcCCCCceeEEEEEEEECcCCEEEEEEe-cCC---CEEEEEEEE
Confidence 566666666444334566666654455666777764 663 499999874
No 37
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=21.80 E-value=1.1e+02 Score=22.35 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=13.8
Q ss_pred CCCceEEEEEEeceeC
Q psy13340 75 IEYTCLYRFRVHGNLA 90 (121)
Q Consensus 75 ~~YTClYR~RVHG~~~ 90 (121)
|+-||.||=-|++.+.
T Consensus 83 P~TT~FY~A~V~~~p~ 98 (130)
T PF07039_consen 83 PDTTCFYPATVVSPPK 98 (130)
T ss_dssp TTSSEEEEEEEEEE-S
T ss_pred CCCceEEEEEEEeCCC
Confidence 7899999999999955
No 38
>PF05910 DUF868: Plant protein of unknown function (DUF868); InterPro: IPR008586 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=20.35 E-value=65 Score=26.81 Aligned_cols=13 Identities=31% Similarity=0.864 Sum_probs=10.4
Q ss_pred CCceEEEEEEece
Q psy13340 76 EYTCLYRFRVHGN 88 (121)
Q Consensus 76 ~YTClYR~RVHG~ 88 (121)
--||+||.++-|.
T Consensus 6 ~vT~vY~~~l~g~ 18 (274)
T PF05910_consen 6 SVTCVYQTKLSGK 18 (274)
T ss_pred eEEEEEEEEecCC
Confidence 4699999999554
Done!