Query psy13340
Match_columns 121
No_of_seqs 107 out of 296
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 16:57:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dxt_A SUN domain-containing p 100.0 1.5E-37 5E-42 240.2 9.1 90 1-90 107-197 (198)
2 2yc2_A IFT25, intraflagellar t 98.9 3.4E-09 1.2E-13 76.2 7.7 68 18-88 71-138 (139)
3 1tvg_A LOC51668 protein; cell 98.2 1.1E-05 3.7E-10 59.4 8.9 72 18-92 79-150 (153)
4 3f2z_A Uncharacterized protein 97.3 0.0022 7.7E-08 45.4 9.5 73 15-92 80-152 (159)
5 3ggl_A Putative chitobiase; X- 97.2 0.0036 1.2E-07 45.0 9.6 73 15-92 90-162 (169)
6 2j1a_A Hyaluronidase, CBM32; p 96.4 0.011 3.8E-07 40.1 6.7 68 15-87 78-150 (150)
7 2jda_A Yecbm32; hypothetical p 95.7 0.076 2.6E-06 36.0 8.5 72 16-92 68-140 (145)
8 3hnm_A Putative chitobiase; PS 95.1 0.024 8.2E-07 41.9 4.5 56 15-74 94-149 (172)
9 1wwy_A Thioredoxin-like protei 94.8 0.024 8.1E-07 42.6 3.8 68 15-92 74-158 (171)
10 1w8o_A Bacterial sialidase; 3D 94.6 0.15 5.2E-06 42.5 8.5 69 16-89 532-601 (601)
11 4a41_A GH89_CBM32-5, alpha-N-a 94.6 0.084 2.9E-06 37.6 6.1 65 15-86 96-160 (161)
12 1xoy_A Hypothetical protein AT 93.9 0.078 2.7E-06 39.3 4.8 64 16-89 83-161 (161)
13 2v72_A CBM32, EXO-alpha-sialid 93.6 0.13 4.3E-06 34.6 5.1 65 15-86 78-142 (143)
14 1jhj_A APC10; beta sandwich, j 93.3 0.29 9.8E-06 36.6 7.1 74 15-91 87-163 (171)
15 1k3i_A Galactose oxidase precu 89.5 0.71 2.4E-05 38.8 6.3 69 17-90 98-167 (656)
16 2v5d_A O-GLCNACASE NAGJ; famil 88.9 0.61 2.1E-05 41.3 5.7 66 17-87 667-737 (737)
17 4a42_A GH89_CBM32-4, alpha-N-a 72.9 8.3 0.00028 26.8 5.6 61 18-87 87-148 (149)
18 1gqp_A DOC1/APC10; cell cycle, 66.2 15 0.00051 28.5 6.2 34 59-92 164-197 (221)
19 4a4a_A Alpha-N-acetylglucosami 65.5 22 0.00075 32.7 8.1 72 16-92 85-157 (914)
20 3lei_A Platelet aggregation fa 58.8 38 0.0013 23.2 6.8 39 48-91 111-149 (153)
21 1k12_A Lectin; beta barrel, pr 57.8 25 0.00086 24.5 5.7 38 49-91 119-156 (158)
22 2zxq_A Endo-alpha-N-acetylgala 56.9 2.3 7.7E-05 40.8 0.0 70 17-89 1301-1375(1376)
23 4a3z_A GH89_CBM32, alpha-N-ace 56.0 33 0.0011 24.3 6.1 66 17-86 91-160 (161)
24 1o59_A Allantoicase; YIR029W, 55.9 85 0.0029 25.9 9.6 69 16-91 120-198 (355)
25 1o59_A Allantoicase; YIR029W, 55.5 48 0.0016 27.4 7.7 65 15-88 283-355 (355)
26 3cqo_A FBP32; F-lectin, fucole 45.0 27 0.00092 26.5 4.4 67 18-91 224-293 (293)
27 3bn6_A Lactadherin; anticoagul 43.6 28 0.00095 24.2 4.0 24 60-87 134-157 (158)
28 3eyp_A Putative alpha-L-fucosi 35.0 41 0.0014 28.2 4.3 30 60-92 431-460 (469)
29 3ues_A Alpha-1,3/4-fucosidase; 34.4 1.3E+02 0.0044 25.3 7.3 24 60-86 453-476 (478)
30 2wuh_A Discoidin domain recept 29.5 73 0.0025 22.8 4.4 30 60-92 148-177 (178)
31 3enb_A PRE-mRNA-processing-spl 29.4 9.2 0.00032 29.8 -0.5 14 76-89 13-26 (222)
32 1czt_A Protein (coagulation fa 29.2 65 0.0022 22.3 4.0 26 60-89 133-158 (160)
33 4gwi_A Lectinolysin, platelet 27.6 1.5E+02 0.0053 20.5 6.6 40 47-91 110-149 (153)
34 3e9l_A PRE-mRNA-processing-spl 24.8 13 0.00043 29.6 -0.5 14 76-89 22-35 (257)
35 3sbt_A PRE-mRNA-splicing facto 24.6 12 0.00041 29.7 -0.7 14 76-89 21-34 (260)
36 2vm9_A Discoidin-2, discoidin 24.3 1.2E+02 0.0039 23.0 4.9 30 60-93 130-159 (257)
37 2j22_A Fucolectin-related prot 21.8 86 0.0029 21.6 3.5 35 49-88 113-147 (148)
No 1
>4dxt_A SUN domain-containing protein 2; beta-sandwich, LINC complex, structural protein; 2.22A {Homo sapiens} PDB: 3unp_A 4dxr_A* 4dxs_A* 4fi9_A
Probab=100.00 E-value=1.5e-37 Score=240.20 Aligned_cols=90 Identities=51% Similarity=0.956 Sum_probs=85.5
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCC-CccccEEEEEEecCCCCCCCce
Q psy13340 1 MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMV-ADTFDMVELKILSNHGNIEYTC 79 (121)
Q Consensus 1 lEHip~~lsp~~~~sSAPKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~-~~~~~~V~l~i~SN~Gn~~YTC 79 (121)
||||+++++|+++++||||+|+|||+.++.++++++||+|+||.++..+|+|+|+.+ ...++.|+|+|+|||||++|||
T Consensus 107 ieHi~~~~sp~~~~~SAPKdf~V~g~~~~~~~~~~~Lg~f~Y~~~~~~~QtF~l~~~~~~~~~~V~l~i~SN~G~~~~TC 186 (198)
T 4dxt_A 107 LEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLLGKFTYDQDGEPIQTFHFQAPTMATYQVVELRILTNWGHPEYTC 186 (198)
T ss_dssp EECCCGGGSGGGCCTTSBCEEEEEEESSSSCCCCEEEEEEECCTTSCSEEEEECSSCCSCCEEEEEEEECCBSSCSSEEE
T ss_pred EEcCchhcccccCcCCCCcEEEEEEEcCCCCCCcEEEEEEEECCCCCcceEEEeCCCCCcceeEEEEEEECCCCCCCcEE
Confidence 699999999999999999999999999988778899999999999989999999987 6789999999999999999999
Q ss_pred EEEEEEeceeC
Q psy13340 80 LYRFRVHGNLA 90 (121)
Q Consensus 80 lYR~RVHG~~~ 90 (121)
||||||||+++
T Consensus 187 lYr~RVhG~~~ 197 (198)
T 4dxt_A 187 IYRFRVHGEPA 197 (198)
T ss_dssp ECEEEEEEECC
T ss_pred EEEEEEcCEeC
Confidence 99999999985
No 2
>2yc2_A IFT25, intraflagellar transport protein 25; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_A
Probab=98.92 E-value=3.4e-09 Score=76.23 Aligned_cols=68 Identities=19% Similarity=0.208 Sum_probs=50.8
Q ss_pred CCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEece
Q psy13340 18 PKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGN 88 (121)
Q Consensus 18 PKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~ 88 (121)
+|+|+|.+..+.....|..+++.++.......|++.++.. ..+++|+|+|+++||+ |+|||||+|+|.
T Consensus 71 ~k~~~ie~s~~~~p~~w~~i~~~~f~~~~~~~q~~~f~~~-~~a~~lrl~i~s~~d~--f~~iy~~~v~G~ 138 (139)
T 2yc2_A 71 VRKLAVEKCDQDKPDQFEKVFEVELANRGDRLQTEVHQVN-IRAKYLKFILLQGHGE--FATVNRVSVVGG 138 (139)
T ss_dssp EEEEEEEEECSSSCCCCEEEEEEECCCC--CCEEEEEEEE-EEEEEEEEEEEEESSS--CCEEEEEEEEEC
T ss_pred CcEEEEEEecCCCCCceEEEEEEEeecCCCCceEEEccCC-CcEEEEEEEEEeccCc--eEEEEEEEEEec
Confidence 5677777665543346888888777665457899766542 2389999999999996 899999999996
No 3
>1tvg_A LOC51668 protein; cell cycle, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Homo sapiens} SCOP: b.18.1.9 PDB: 1xpw_A
Probab=98.16 E-value=1.1e-05 Score=59.37 Aligned_cols=72 Identities=11% Similarity=0.026 Sum_probs=54.9
Q ss_pred CCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEeceeCCC
Q psy13340 18 PKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPS 92 (121)
Q Consensus 18 PKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~~~ 92 (121)
+|+|+|.+..+.....|..+++.+|.......|+|.++. ....++|+|.|+++++. |.+||+|+|.|....+
T Consensus 79 vk~~~ie~s~d~~p~~w~~i~e~ef~~~~n~~Q~~~~~~-~~~a~~lRl~i~s~~d~--fv~Iy~l~v~G~~~~~ 150 (153)
T 1tvg_A 79 VQTLKIEKSTSKEPVDFEQWIEKDLVHTEGQLQNEEIVA-HGSATYLRFIIVSAFDH--FASVHSVSAEGTVVSN 150 (153)
T ss_dssp EEEEEEEEECSSSSCCCEEEEEEECCCCTTCCEEEEECC-CEEEEEEEEEEEEESSS--CCEEEEEEEEEEEEC-
T ss_pred CEEEEEEEECCCCCcceEEeEEEEecCCCCcEEEEEcCC-CceeEEEEEEEEccccc--EEEEEEEEEEEEEccc
Confidence 455555554433212688899988877655689999986 34689999999999995 8999999999998765
No 4
>3f2z_A Uncharacterized protein BF3579; the present C-terminal domain is predominantly composed of B strands., structural genomics, PSI-2; 1.30A {Bacteroides fragilis} PDB: 2kd7_A
Probab=97.30 E-value=0.0022 Score=45.35 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=56.9
Q ss_pred CCCCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEeceeCCC
Q psy13340 15 DSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPS 92 (121)
Q Consensus 15 sSAPKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~~~ 92 (121)
...|++|+|+...|. ..|..++++++...+ ..|+|.++ ....++|+|++++++|+..+.+|.-|+|+|....-
T Consensus 80 ~~~~~~~~I~~S~Dg--~~W~~v~~~~~~~~~-~~~~~~~~--~~~aRYVRi~~~~~~~~~~~~si~Ei~vy~~~~~~ 152 (159)
T 3f2z_A 80 NNPIKVVRFEASEDG--TNWESIGQFGFTNQD-AALKYYVK--SSTARYIKLVIPDGVGNGTVAAIRELDVRGTVVNL 152 (159)
T ss_dssp CCCCCEEEEEEESSS--SSCEEEEEEECCCCS-SCEEECCC--CEEEEEEEEEECSSSSCCSCCEEEEEEEEEEECC-
T ss_pred CCCeeEEEEEEEcCC--CCeEEeEEeecCCCC-ccEEEecC--CceEEEEEEEEEeccCCCceEEEEEEEEEcCCCCc
Confidence 457999999986654 357889998876543 46777554 35789999999999997679999999999987653
No 5
>3ggl_A Putative chitobiase; X-RAY, structure genomics, NESG, BTR324A, Q8A9F0_bactn, BT_0865, PSI-2, protein structure initiative; 3.00A {Bacteroides thetaiotaomicron}
Probab=97.17 E-value=0.0036 Score=44.97 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=56.8
Q ss_pred CCCCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEeceeCCC
Q psy13340 15 DSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPS 92 (121)
Q Consensus 15 sSAPKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~~~ 92 (121)
...|++|+|+...|. ..|..+++.++...+ ..|++.++. ...++|+|++++++|+..+.+|.-|+|+|....-
T Consensus 90 ~~~~~~y~I~~S~Dg--~~W~~v~~~~~~~~~-~~~~~~f~~--~~aRYVRi~~~~~~~~~~~~si~Ei~vy~~~~~~ 162 (169)
T 3ggl_A 90 NNPIKVVEFAASEDN--VNWTPIGRFGFTNQD-AALEYYVKS--IKARYIRLTIPDDGGNSTVAAIRELDVKGTIINL 162 (169)
T ss_dssp CCCCCEEEEEEESSS--SCCEEEEEEECCCCS-SCEEECCCC--EEEEEEEEEECSSSSCCSCCEEEEEEEEEEECC-
T ss_pred CCCeeEEEEEEeCCC--CCcEEeEEEEeccCC-CcEEEEecC--ceEEEEEEEEEeCCCCCceEEEEEEEEEcCCCCc
Confidence 457999999986554 357889998876553 357775543 4789999999999997679999999999987653
No 6
>2j1a_A Hyaluronidase, CBM32; protein-carbohydrate interaction, glycoside hydrolase, GH84C, hydrolase; HET: GAL; 1.49A {Clostridium perfringens} PDB: 2j1e_A* 2j7m_A*
Probab=96.37 E-value=0.011 Score=40.08 Aligned_cols=68 Identities=16% Similarity=0.189 Sum_probs=49.5
Q ss_pred CCCCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCCCccccEEEEEEecCC-----CCCCCceEEEEEEec
Q psy13340 15 DSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNH-----GNIEYTCLYRFRVHG 87 (121)
Q Consensus 15 sSAPKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~-----Gn~~YTClYR~RVHG 87 (121)
...|+.|+|.+..+. ..|..+++.+++..+ ..|++.+.. ...++|+|.+++.+ |...+.+|+-|+|+|
T Consensus 78 ~~~~~~~~i~~S~Dg--~~w~~v~~~~~~~~~-~~~~~~~~~--~~aryvRi~~~~~~~~~~~~~~~~~~i~Ei~v~G 150 (150)
T 2j1a_A 78 NGRITGYKVSVSLDG--ENFTEVKTGTLEDNA-AIKFIEFDS--VDAKYVRLDVTDSVSDQANGRGKFATAAEVNVHG 150 (150)
T ss_dssp TTEEEEEEEEEESSS--SSEEEEEEEECCSSS-SCEEEEEEE--EEEEEEEEEEEEEECCC--CTTTCCEESEEEEEC
T ss_pred CCCEEEEEEEEEcCC--CceEEEEEeeECCCC-ceEEEEECC--eEEEEEEEEEEecccccccCCCceEEEEEEEEeC
Confidence 346788888877553 347788887766554 357776663 47899999999765 233689999999998
No 7
>2jda_A Yecbm32; hypothetical protein, carbohydrate- binding module, sugar-binding protein, pectin, plant cell WALL, galacturonic acid; 1.35A {Yersinia enterocolitica} PDB: 2jd9_A
Probab=95.75 E-value=0.076 Score=36.02 Aligned_cols=72 Identities=14% Similarity=0.133 Sum_probs=51.9
Q ss_pred CCCCeEEEEEEecCCCCCceEEEEEEEcCC-CCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEeceeCCC
Q psy13340 16 SAPKKFAVWGLREKYDENPTLLGEFMYDSE-GPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPS 92 (121)
Q Consensus 16 SAPKdF~V~G~~~~~~~~~~~LG~f~Yd~~-~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~~~ 92 (121)
..|++|.|....|.. .|..+.+.+.... ....+++.+. ....++|+|.+..+.++ .+..|+.|+|+|....+
T Consensus 68 ~~~~~~~i~~S~Dg~--~w~~~~~~~~~~~~~~~~~~~~f~--~~~aryvRi~~~~~~~~-~~~~i~Ei~v~g~~~~~ 140 (145)
T 2jda_A 68 ERKLKFSIFYSNDGK--NWQPLAEGLETSSADKNGEKLTFT--PVTAKYIKLDTFGTDVN-NWSAINEIAINSAAALP 140 (145)
T ss_dssp TCCEEEEEEEESSSS--SCEEEEEEEECCCSCSSCEEEEEE--EEEEEEEEEEEEEESSS-SEEEEEEEEESCCCSSC
T ss_pred CceEEEEEEEeCCCC--ceEEeeeCccccCCCCccEEEEeC--cccEEEEEEEEECCCCC-cEeEEEEEEEECCCCCC
Confidence 368899998865432 4777877665222 2345777773 34779999999998875 47899999999987654
No 8
>3hnm_A Putative chitobiase; PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, BTR319D.BT_411; 3.00A {Bacteroides thetaiotaomicron}
Probab=95.13 E-value=0.024 Score=41.87 Aligned_cols=56 Identities=11% Similarity=-0.013 Sum_probs=43.1
Q ss_pred CCCCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCCCccccEEEEEEecCCCC
Q psy13340 15 DSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGN 74 (121)
Q Consensus 15 sSAPKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn 74 (121)
...||+++||+..+.. .|..||++++...+...+.+.+++ ..+++|+|.|++.|+.
T Consensus 94 ~g~ik~~~I~~S~Dg~--~W~~v~~~~~~~~~~~~~~~~~~~--~~aRYIR~~v~~g~~~ 149 (172)
T 3hnm_A 94 AGTSKAGYVEASIDNE--NWVKLKDWTSPKIGEPNVNMDVPA--TQARYIRFVITDTYPT 149 (172)
T ss_dssp TCCEEEEEEEEESSSS--CEEEEECCBCSSTTCSCEEEEEEE--EEEEEEEEEEEEECCC
T ss_pred CCCeEEEEEEEEeCCC--CeEEeEEEEecCCCCceEEeecCC--CceEEEEEEEccCccc
Confidence 4589999999987753 589999999988765444444433 4679999999998863
No 9
>1wwy_A Thioredoxin-like protein 1; structural genomics, hypothetical protein, regulatory protei apoptosis, cancer; NMR {Homo sapiens}
Probab=94.84 E-value=0.024 Score=42.58 Aligned_cols=68 Identities=19% Similarity=0.238 Sum_probs=47.0
Q ss_pred CCCCCeEEEEEEe-cCCCCCceEEEEEEEcC--CCCceeEEEecCC-------------C-ccccEEEEEEecCCCCCCC
Q psy13340 15 DSAPKKFAVWGLR-EKYDENPTLLGEFMYDS--EGPTLQYFEAKMV-------------A-DTFDMVELKILSNHGNIEY 77 (121)
Q Consensus 15 sSAPKdF~V~G~~-~~~~~~~~~LG~f~Yd~--~~~~iQtF~v~~~-------------~-~~~~~V~l~i~SN~Gn~~Y 77 (121)
.+|||.+.||.=. ..-+ ||. +..+.|+|+|... + ..++.+.|-|.+|||..+-
T Consensus 74 ~~~Pk~iKlf~N~~~~ld----------Fd~a~~~~p~Q~~eL~~~~~~~g~~~~Lr~vkFqnV~sLtlf~~~n~~g~e~ 143 (171)
T 1wwy_A 74 GQGPKYVKIFINLPRSMD----------FEEAERSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTIFVQSNQGEEET 143 (171)
T ss_dssp SCCBCEEEEEESCSSCCC----------TTHHHHSCCSSCEECCTTTSSTTCCEECCTTTCTTEEEEEEEECCBTTCCSS
T ss_pred CCCCcEEEEeecCCCCcC----------hhhhccCCCceEEEcCCcccCCCcEEEccceEEcccCEEEEEEecCCCCCcc
Confidence 5799999999654 2212 111 1235566655543 1 2456788889999977789
Q ss_pred ceEEEEEEeceeCCC
Q psy13340 78 TCLYRFRVHGNLAPS 92 (121)
Q Consensus 78 TClYR~RVHG~~~~~ 92 (121)
|-||++++.|++...
T Consensus 144 T~I~~I~l~Ge~~~~ 158 (171)
T 1wwy_A 144 TRISYFTFIGTPVQA 158 (171)
T ss_dssp CCBCCEEEEEEESSC
T ss_pred EEEEEEEEEeEecCc
Confidence 999999999998764
No 10
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A*
Probab=94.59 E-value=0.15 Score=42.49 Aligned_cols=69 Identities=10% Similarity=0.062 Sum_probs=50.6
Q ss_pred CCCCeEEEEEEecCCCCCceE-EEEEEEcCCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEecee
Q psy13340 16 SAPKKFAVWGLREKYDENPTL-LGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNL 89 (121)
Q Consensus 16 SAPKdF~V~G~~~~~~~~~~~-LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~ 89 (121)
..++.|+|++..+.. .|.. +..-++..++ ..|++.+.. ...++|+|++++++|...+.+|.-|+|+|.+
T Consensus 532 ~~~~~y~i~~S~Dg~--~w~~~v~~~~~~~~~-~~~~~~f~~--~~aRyvRi~~~~~~~~~~~~~i~Ei~v~g~~ 601 (601)
T 1w8o_A 532 EQVADYEIYTSLNGT--TWDGPVASGRFTTSL-APQRAVFPA--RDARYIRLVALSEQTGHKYAAVAELEVEGQR 601 (601)
T ss_dssp TCBCEEEEEEESSSS--SCEEEEEEEECCSCS-SCEEEEEEE--EEEEEEEEEECCBTTSCSCCEEEEEEEEECC
T ss_pred CceEEEEEEEECCCC--ccceeeeeEEEcCCC-ceEEEEeCC--cceEEEEEEEEEcCCCCceEEEEEEEEEecC
Confidence 368899999886653 3553 5555555443 356666653 4679999999999987689999999999964
No 11
>4a41_A GH89_CBM32-5, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: GAL; 1.55A {Clostridium perfringens} PDB: 4a44_A* 4a45_A* 4aax_A*
Probab=94.57 E-value=0.084 Score=37.61 Aligned_cols=65 Identities=17% Similarity=0.237 Sum_probs=48.9
Q ss_pred CCCCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEe
Q psy13340 15 DSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVH 86 (121)
Q Consensus 15 sSAPKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVH 86 (121)
...|++|+|+...|. ..|..+++.+++.++ ..|++.+.. ...++|+|.++++.|+ |.+|.-|+|+
T Consensus 96 ~~~~~~y~I~~S~DG--~~W~~v~~g~~~~~~-~~~~~~f~~--v~aRYVRi~~~~~~~~--~~si~E~~Vy 160 (161)
T 4a41_A 96 NGNITKYELHVSEDG--NNFRKISEGNWDDSG-SLKTLKFNS--TKATHVKLVALEGVGG--FASAAELNVF 160 (161)
T ss_dssp TTCEEEEEEEEESSS--SCEEEEEEEECCSSS-SCEEEEEEE--EEEEEEEEEEEEEGGG--CCEESEEEEE
T ss_pred CCcEEEEEEEEECCC--CceEEeeeeeecCCC-cEEEEEeCC--ceEEEEEEEEEEccCC--eEEeEeEEEE
Confidence 346888999886544 347788877766554 367777763 4679999999999884 8899999986
No 12
>1xoy_A Hypothetical protein AT3G04780.1; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: b.18.1.26
Probab=93.87 E-value=0.078 Score=39.28 Aligned_cols=64 Identities=16% Similarity=0.217 Sum_probs=44.6
Q ss_pred CCCCeEEEEEEecCCCCCceEEEEEEEcC--CCCceeEEEecCCC-------------ccccEEEEEEecCCCCCCCceE
Q psy13340 16 SAPKKFAVWGLREKYDENPTLLGEFMYDS--EGPTLQYFEAKMVA-------------DTFDMVELKILSNHGNIEYTCL 80 (121)
Q Consensus 16 SAPKdF~V~G~~~~~~~~~~~LG~f~Yd~--~~~~iQtF~v~~~~-------------~~~~~V~l~i~SN~Gn~~YTCl 80 (121)
+|||.+.||.=...- .||. +..+.|+|++.... ..++.+.|-|.+|||..+-|-|
T Consensus 83 ~~Pk~iKlf~N~~~l----------dFd~a~~~~p~Q~~el~~~~~~g~~~~lr~vkFqnV~sLtlf~~~n~~g~e~T~I 152 (161)
T 1xoy_A 83 EGPKTVKFFSNKEHM----------CFSNVNDFPPSDTAELTEENLKGKPVVLKYVKFQNVRSLTIFIEANQSGSEVTKV 152 (161)
T ss_dssp TSEEEEEEEESCSCC----------CHHHHTTSCCSEEECCCTTGGGTCCEECCTTTCSCEEEEEEEEEEETTCCSCCEE
T ss_pred CCCcEEEEeeCCCCC----------ChhhhccCCCceEEECCCCcCCCcEEeccceeEcccCEEEEEEecCCCCCccEEE
Confidence 799999999543321 1222 12456776665431 2456788889999977789999
Q ss_pred EEEEEecee
Q psy13340 81 YRFRVHGNL 89 (121)
Q Consensus 81 YR~RVHG~~ 89 (121)
|++++.|++
T Consensus 153 ~~I~l~G~~ 161 (161)
T 1xoy_A 153 QKIALYGST 161 (161)
T ss_dssp SEEEEEECC
T ss_pred EEEEEEecC
Confidence 999999975
No 13
>2v72_A CBM32, EXO-alpha-sialidase; galactose, bacterial pathogen, carbohydrate-binding module, sugar-binding protein; HET: GAL; 2.25A {Clostridium perfringens}
Probab=93.60 E-value=0.13 Score=34.62 Aligned_cols=65 Identities=9% Similarity=0.227 Sum_probs=44.3
Q ss_pred CCCCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEe
Q psy13340 15 DSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVH 86 (121)
Q Consensus 15 sSAPKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVH 86 (121)
...++.|+|+...+... ..+...+++..+ ..+++.+.. ....++|+|.+++.+| .|.+|.-|+|+
T Consensus 78 ~~~~~~~~i~~S~Dg~~---~~v~~g~~~~~~-~~~~~~f~~-p~~aRyvRi~~~~~~~--~~~~i~Ei~v~ 142 (143)
T 2v72_A 78 NGFITKYEIHAINNGVE---TLVAEGTWEENN-LVKTVTFDS-PIDAEEIKITAIQGVG--GFASIAELNVY 142 (143)
T ss_dssp TTCEEEEEEEEEETTEE---EEEEEEECCSSS-SCEEEEEEE-EEEEEEEEEEEEEEGG--GCCEESEEEEE
T ss_pred CCCEEEEEEEEEcCCCc---cEEeEEEEcCCC-ceEEEEeCC-CCcEEEEEEEEEEcCC--CeEEEEEEEEE
Confidence 34578888887765432 344444444433 356666654 2467999999999998 58999999986
No 14
>1jhj_A APC10; beta sandwich, jellyroll, cell cycle; 1.60A {Homo sapiens} SCOP: b.18.1.9
Probab=93.32 E-value=0.29 Score=36.61 Aligned_cols=74 Identities=14% Similarity=0.071 Sum_probs=50.5
Q ss_pred CCCCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCC---CccccEEEEEEecCCCCCCCceEEEEEEeceeCC
Q psy13340 15 DSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMV---ADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAP 91 (121)
Q Consensus 15 sSAPKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~---~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~~ 91 (121)
+=.|+.++|.+=.+.. ....+...+.+.. ..-..+.+... ......|++.|++||.|..-|+|-.+||+|....
T Consensus 87 SYtPs~I~v~aG~~~~--dL~ei~~v~l~~p-~Gwv~i~l~~~~~~~~~~~~IQI~I~~nhqnG~DthIR~ikI~G~~~~ 163 (171)
T 1jhj_A 87 SYTPSKISVRVGNNFH--NLQEIRQLELVEP-SGWIHVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVEE 163 (171)
T ss_dssp GGSEEEEEEEEESSTT--SCEEEEEEECSSC-EEEEEEECBCTTSSBEEEEEEEEEEEEEGGGCSSCEECEEEEEEEC--
T ss_pred CCCcEEEEEEEeCCcc--cceeEEEEEccCC-CEEEEEEeccCCCCceeEEEEEEEEeccCCCCCccEEEEEEEEecCCC
Confidence 3356666665544433 3567888877754 23456666432 2455699999999998888999999999998544
No 15
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=89.50 E-value=0.71 Score=38.82 Aligned_cols=69 Identities=9% Similarity=0.058 Sum_probs=52.4
Q ss_pred CCCeEEEEEEecCCCCCc-eEEEEEEEcCCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEeceeC
Q psy13340 17 APKKFAVWGLREKYDENP-TLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLA 90 (121)
Q Consensus 17 APKdF~V~G~~~~~~~~~-~~LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~ 90 (121)
-+++|+|+...|... | ..+.+.+++.++. .|++.+.. ...++|+|+++++.+...|..|.-|+|+|...
T Consensus 98 ~~~~y~i~~S~Dg~~--w~~~v~~~~~~~~~~-~~~~~~~~--~~aRyvRi~~~~~~~~~~~~si~E~~v~~~~~ 167 (656)
T 1k3i_A 98 WIGRHEVYLSSDGTN--WGSPVASGSWFADST-TKYSNFET--RPARYVRLVAITEANGQPWTSIAEINVFQASS 167 (656)
T ss_dssp CBCEEEEEEESSSSC--CCSCSEEEECCSSSS-CEEEEEEE--EEEEEEEEEECSBTTSCSCCEESEEEEEECSC
T ss_pred CeeEEEEEEECCCCC--cceeeeeeeecCCCc-ceeeecCC--cceEEEEEEEecccccCCceeEEEEEEeeccc
Confidence 589999998776543 5 5666666666553 46666653 46799999999999877789999999999863
No 16
>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module, glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil; 3.30A {Clostridium perfringens}
Probab=88.92 E-value=0.61 Score=41.28 Aligned_cols=66 Identities=15% Similarity=0.149 Sum_probs=46.3
Q ss_pred CCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCCCccccEEEEEEecCC-----CCCCCceEEEEEEec
Q psy13340 17 APKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNH-----GNIEYTCLYRFRVHG 87 (121)
Q Consensus 17 APKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~-----Gn~~YTClYR~RVHG 87 (121)
-++.|+|+...|.. .|..+++.++..++ ..|++.+.. ...++|+|.+++++ |+..+..|+-|+|+|
T Consensus 667 ~v~~y~I~~S~DG~--~W~~v~~gt~~~~~-~~~~v~f~~--v~ARYVRi~~~~~~~~~~~G~~~~~siaE~~VyG 737 (737)
T 2v5d_A 667 RITGYKVSVSLDGE--NFTEVKTGTLEDNA-AIKFIEFDS--VDAKYVRLDVTDSVSDQANGRGKFATAAEVNVHG 737 (737)
T ss_dssp EEEEEEEEEESSSS--CCCCSEEEECCSSS-SCEEEEEEE--EEEEEEEEEEEEEECSSSSCTTTCCEESEEEEEC
T ss_pred ceEEEEEEEEcCCC--ceEEEEeeeecCCC-ceEEEEeCC--ceEEEEEEEEEeeccccccCCCCcEEEEEEEEEC
Confidence 45777777765543 35666666655433 456666653 46799999999886 345789999999998
No 17
>4a42_A GH89_CBM32-4, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: MSE; 1.55A {Clostridium perfringens}
Probab=72.90 E-value=8.3 Score=26.81 Aligned_cols=61 Identities=11% Similarity=0.009 Sum_probs=39.7
Q ss_pred CCeEEEEEEecCCCCCceE-EEEEEEcCCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEec
Q psy13340 18 PKKFAVWGLREKYDENPTL-LGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHG 87 (121)
Q Consensus 18 PKdF~V~G~~~~~~~~~~~-LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG 87 (121)
++.|+|....|.. .|.. ...-++.. ....+++.+.. ....++|+|.++++ +..|.-|+|++
T Consensus 87 v~~y~I~~S~DG~--~W~~~~~~g~~~~-~~~~~~~~f~~-pv~aRYVRi~~~~~-----~~si~E~~Vy~ 148 (149)
T 4a42_A 87 PLKYSIEISNDGT--EWTKIVDENNNEE-NKAVYSNILKS-GKIGRFVRFNFNSE-----NVKIGEIKIYK 148 (149)
T ss_dssp CCCEEEEEESSSS--SCEEEEEETTCCC-CCSEEEEECCT-TCEEEEEEEEECSS-----SCCEEEEEEEE
T ss_pred cEEEEEEEEcCCC--eEeEeEEcceeCC-CCceEEEEcCC-CceEEEEEEEEecC-----CcEEEEEEEEC
Confidence 7888887765543 3443 22222322 23468888765 35789999999987 66788888874
No 18
>1gqp_A DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, ubiquitination, E3 ubiquitin ligase, beta sandwich, jelly roll; 2.2A {Saccharomyces cerevisiae} SCOP: b.18.1.9
Probab=66.16 E-value=15 Score=28.46 Aligned_cols=34 Identities=21% Similarity=0.087 Sum_probs=27.8
Q ss_pred ccccEEEEEEecCCCCCCCceEEEEEEeceeCCC
Q psy13340 59 DTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPS 92 (121)
Q Consensus 59 ~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~~~ 92 (121)
..+..|++.|++||=|..-|.|..+||+|.....
T Consensus 164 l~~~~IQI~I~~nhqnGrDThIRqIkI~Gp~~~~ 197 (221)
T 1gqp_A 164 LKCQFIRLLFPVNHENGKDTHLRGIRLYVPSNEP 197 (221)
T ss_dssp EEEEEEEEEEEEESTTCSSCEESCEEEEEEC---
T ss_pred eEEEEEEEEEeeccCCCCccEEEEEEEEccCCcc
Confidence 3456899999999999999999999999986543
No 19
>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2 hydrolase, family 89 glycoside hydrolase, mucin carbohydrate-active enzyme; HET: NDG GAL; 1.90A {Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A* 2vca_A
Probab=65.55 E-value=22 Score=32.68 Aligned_cols=72 Identities=8% Similarity=0.094 Sum_probs=44.6
Q ss_pred CCCCeEEEEEEecCCCCCceEEEEEEE-cCCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEeceeCCC
Q psy13340 16 SAPKKFAVWGLREKYDENPTLLGEFMY-DSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPS 92 (121)
Q Consensus 16 SAPKdF~V~G~~~~~~~~~~~LG~f~Y-d~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~~~ 92 (121)
.+.+.|+|.+..|.. .|..+.+-+- .......++..+. ....++|+|.++.+-|. ....|+-|+|+|.....
T Consensus 85 ~~v~~Y~Ie~S~DG~--~Wt~v~~~t~~~~~~~~~d~v~f~--pv~ARYVRL~~t~~~~~-~~~SI~EfeVyG~~~g~ 157 (914)
T 4a4a_A 85 EAVYKYNIYASEDGE--NFNKIAYKNNDNVSDSNGNMHTID--NVRAGKIRIDVVQNSNS-DRVNIAEINVFGKNTGE 157 (914)
T ss_dssp SSCEEEEEEEESSSS--CCEEEEEECSCCCCCTTCEEEEEE--EEEEEEEEEEEEEETTC-SSCEESEEEEEEEECSC
T ss_pred CceEEEEEEEEcCCC--CeEEEEEcccCccCCCccceEEeC--CceEEEEEEEEEecCCC-CceEEEEEEEEcCCCCC
Confidence 345677777665543 3555544221 1111112344442 23579999999988775 58899999999998765
No 20
>3lei_A Platelet aggregation factor SM-HPAF; lectin domain of lectinolysin, fucose, blood clotting, nicke; HET: FUC; 1.90A {Streptococcus mitis} PDB: 3leg_A* 3le0_A* 3lek_A*
Probab=58.76 E-value=38 Score=23.24 Aligned_cols=39 Identities=8% Similarity=-0.021 Sum_probs=27.5
Q ss_pred ceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEeceeCC
Q psy13340 48 TLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAP 91 (121)
Q Consensus 48 ~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~~ 91 (121)
...++.+.. ...++|+|++..+- .+-.|+-|+|+|....
T Consensus 111 ~~~~~~~~~--~~~RYVri~~~~~~---~~~sl~EveVyg~~~~ 149 (153)
T 3lei_A 111 AELEVFFTA--KDARYVKVELKTKN---TPLSLAEVEVFRSATT 149 (153)
T ss_dssp SEEEEEEEE--EEEEEEEEEECSTT---BCCCEEEEEEEEBCC-
T ss_pred CeEEEEeCC--eEEEEEEEEeeCCC---CcEEEEEEEEEcCccc
Confidence 344555432 35699999997654 3678999999998754
No 21
>1k12_A Lectin; beta barrel, protein carbohydrate complex, sugar binding protein; HET: FUC; 1.90A {Anguilla anguilla} SCOP: b.18.1.15
Probab=57.82 E-value=25 Score=24.49 Aligned_cols=38 Identities=13% Similarity=0.023 Sum_probs=28.1
Q ss_pred eeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEeceeCC
Q psy13340 49 LQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAP 91 (121)
Q Consensus 49 iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~~ 91 (121)
..+|.+.. ...-++|+|++..+ .+-.|+-|+|+|.++.
T Consensus 119 ~~~i~~~~-~~~gRYVrv~~~g~----~~lsl~EveVyg~~~~ 156 (158)
T 1k12_A 119 TKTFHCPA-PMIGRYVVTYLPTS----ESLHLCEVEVNVDKPA 156 (158)
T ss_dssp EEEEEEEE-EEEEEEEEEECCSS----SCCCEEEEEEEEEEEC
T ss_pred EEEEECCC-CCeeEEEEEEECCC----CeEEEEEEEEecccCC
Confidence 46676632 24578999999743 5788999999998764
No 22
>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel, glycosidase, hydrolase; 2.00A {Bifidobacterium longum}
Probab=56.94 E-value=2.3 Score=40.83 Aligned_cols=70 Identities=11% Similarity=0.152 Sum_probs=0.0
Q ss_pred CCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCCCccccEEEEEEecCCCCCC-----CceEEEEEEecee
Q psy13340 17 APKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIE-----YTCLYRFRVHGNL 89 (121)
Q Consensus 17 APKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~-----YTClYR~RVHG~~ 89 (121)
-+++|+|+...++. ..|..+.+.++..++ ..|++.+.. ....++|+|.+++-+|... |.+|+-|||+|..
T Consensus 1301 ~VksYkIeVS~dDG-~nWttVa~GTFsgn~-t~kti~Fd~-PVkARYVRf~ats~~gg~g~~~Nk~aSIAEf~Vyg~k 1375 (1376)
T 2zxq_A 1301 KIKGYKITLTLADG-TTKDVVTDAEFSTTT-MWQKASFDA-VENVTAVRLTVLSSAGQSDSQANKFASAAELRLTTDR 1375 (1376)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred ceEEEEEEEECCCC-CeEEEEEeeEEcCCC-ceEEEEeCC-CceEEEEEEEEEEccCCCCccccceEEEEEEEEeccC
Confidence 56777777766221 235556554554433 467777765 2457999999999887644 8999999999853
No 23
>4a3z_A GH89_CBM32, alpha-N-acetylglucosaminidase family protein; hydrolase, family 32 carbohydrate-binding module; HET: MSE; 1.55A {Clostridium perfringens} PDB: 4a6o_A*
Probab=56.03 E-value=33 Score=24.34 Aligned_cols=66 Identities=8% Similarity=0.062 Sum_probs=39.3
Q ss_pred CCCeEEEEEEecCCCCCceEEEEEEEcCCCCceeEEEecCCCccccEEEEEEecCCCC----CCCceEEEEEEe
Q psy13340 17 APKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGN----IEYTCLYRFRVH 86 (121)
Q Consensus 17 APKdF~V~G~~~~~~~~~~~LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn----~~YTClYR~RVH 86 (121)
+.+.|+|.+..|.. .|..+.+.+ ...+...++|.++. ....++|+|.|..+=++ ..+..|+-|.|.
T Consensus 91 ~~~~y~IevS~Dg~--~W~~v~~~t-~~~~~~~~~~~~~~-~~~aRYVRv~~~~~~~~g~~~~~~~si~E~~V~ 160 (161)
T 4a3z_A 91 FRFQFKVEVEDESG--NRETVLDMT-SNTEDNKKSYNIPV-KKEISKIHATITGKAPGGSFDQAWAAIAEIKAM 160 (161)
T ss_dssp CCEEEEEEEECTTC--CEEEEEECT-TCCSCCCSEEEEEE-EEEEEEEEEEEEEECSCSTTTTCCCEESEEEEE
T ss_pred ceEEEEEEEEcCCC--CEEEEEEec-CCCCCccEEEEcCC-CcEEEEEEEEEEecCCCccccCCCCEEEEEEEe
Confidence 34678888775442 355554432 11122345565552 23679999999977654 245689888875
No 24
>1o59_A Allantoicase; YIR029W, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics, hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: b.18.1.22 b.18.1.22 PDB: 1sg3_A
Probab=55.95 E-value=85 Score=25.88 Aligned_cols=69 Identities=19% Similarity=0.283 Sum_probs=45.8
Q ss_pred CCCCeEEEEEEecCC--------CCCceEEEEEEEcCCCCceeEEEecCC--CccccEEEEEEecCCCCCCCceEEEEEE
Q psy13340 16 SAPKKFAVWGLREKY--------DENPTLLGEFMYDSEGPTLQYFEAKMV--ADTFDMVELKILSNHGNIEYTCLYRFRV 85 (121)
Q Consensus 16 SAPKdF~V~G~~~~~--------~~~~~~LG~f~Yd~~~~~iQtF~v~~~--~~~~~~V~l~i~SN~Gn~~YTClYR~RV 85 (121)
..|..++|-|...+. +..|..|=.-+ ...+...+.|++... ..++-.|+|.|-=--| |=||||
T Consensus 120 N~pp~vsvea~~~~~~~~~~~~~~~~W~~ilp~~-~l~p~~~h~f~v~~~~~~~~~THvRLniyPDGG------iaRlRv 192 (355)
T 1o59_A 120 NHAPFVSIEALYDEGEEGNIVEDDSRWVEIVEKF-ECGPSQRHLFVRGNGLTKERFTHIKLKMYPDGG------IARFRL 192 (355)
T ss_dssp SBCSEEEEEEECCCSCCSCCCTTCTTCEEEEEEE-ECCTTCEEEEECTTCSCSSCBSEEEEEEESCCE------ESEEEE
T ss_pred CCCCeEEEEEEecCCCcccccccCCCceEeeccc-ccCCCcEeeEECcccCCCcceeEEEEEEecCCC------eeEEEE
Confidence 357778888875421 22355443332 133445678999873 4578999999964444 779999
Q ss_pred eceeCC
Q psy13340 86 HGNLAP 91 (121)
Q Consensus 86 HG~~~~ 91 (121)
||+..+
T Consensus 193 yG~~~~ 198 (355)
T 1o59_A 193 YGRVVP 198 (355)
T ss_dssp EEEECC
T ss_pred eccccC
Confidence 999887
No 25
>1o59_A Allantoicase; YIR029W, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics, hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: b.18.1.22 b.18.1.22 PDB: 1sg3_A
Probab=55.47 E-value=48 Score=27.37 Aligned_cols=65 Identities=18% Similarity=0.185 Sum_probs=42.1
Q ss_pred CCCCCeEEEEEEecCC-C------CCceE-EEEEEEcCCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEe
Q psy13340 15 DSAPKKFAVWGLREKY-D------ENPTL-LGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVH 86 (121)
Q Consensus 15 sSAPKdF~V~G~~~~~-~------~~~~~-LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVH 86 (121)
..+|..++|.|+..+. + ..|.. |..-. ..+...+.|.+.. ...+..|+|.|-= --+|-||||+
T Consensus 283 GN~P~~vsi~a~~~~~~~~~~~~~~~W~~llp~t~--l~pd~~H~f~~~~-~~~~THvRL~I~P------DGGVaRlRv~ 353 (355)
T 1o59_A 283 GNFPQFITVEGCLKESESSENTGEGTWVELVGKSK--TGPDKEHVYEIRK-SIRVSHVKLTIIP------DGGVKRIRVW 353 (355)
T ss_dssp SSCCSEEEEEEECC-----------CEEEEEEEEE--CCTTCEEEEEEEE-ECCCSEEEEEEES------CCEECEEEEE
T ss_pred CCCCCeEEEEEEecCCCcccccccCCCeEeccCcc--cCCCceeeeecCC-CCceEEEEEEEEC------CCceEEEEEe
Confidence 4578899999986432 1 12443 43333 2334567888844 4578999999943 4568999999
Q ss_pred ce
Q psy13340 87 GN 88 (121)
Q Consensus 87 G~ 88 (121)
|.
T Consensus 354 G~ 355 (355)
T 1o59_A 354 GY 355 (355)
T ss_dssp EC
T ss_pred eC
Confidence 95
No 26
>3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A {Morone saxatilis}
Probab=45.04 E-value=27 Score=26.52 Aligned_cols=67 Identities=15% Similarity=0.022 Sum_probs=38.9
Q ss_pred CCeEEEEEEecCC---CCCceEEEEEEEcCCCCceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEeceeCC
Q psy13340 18 PKKFAVWGLREKY---DENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAP 91 (121)
Q Consensus 18 PKdF~V~G~~~~~---~~~~~~LG~f~Yd~~~~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~~ 91 (121)
.+.|+|....+.. ...+...+. +.......-+|.++. ...++|+|++..+ ..+-.|+-|+|+|.+.+
T Consensus 224 ~~~~~i~vs~s~~~~~~~n~~~~~~--~~~~~~~~~~~~~~~--~~~RYVrv~~~~~---~~~~sl~EveVyg~~~~ 293 (293)
T 3cqo_A 224 INGAEIRIGDSLDNNGNHNPRCAVI--TSIPAGASTEFQCNG--MDGRYVNIVIPGR---EEYLTLCEVEVYGSVLD 293 (293)
T ss_dssp GTTEEEEEESCCGGGGTTSCEEEEE--CCCCTTCEEEEEEEE--EEEEEEEEECTTS---EECCCCSEEEEEEECCC
T ss_pred cCCeEEEEeccCccccccCceeeee--cccCCCCEEEEEcCC--eeEEEEEEEecCC---CccEEEEEEEEeccCCC
Confidence 4667776653221 223444322 233222234454332 3569999999865 24788999999998753
No 27
>3bn6_A Lactadherin; anticoagulation, anti-coagulation, anticoagulant, anti- coagulant, membrane binding, phosphatidyl-serine binding; 1.67A {Bos taurus} PDB: 2pqs_A
Probab=43.62 E-value=28 Score=24.16 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=19.8
Q ss_pred cccEEEEEEecCCCCCCCceEEEEEEec
Q psy13340 60 TFDMVELKILSNHGNIEYTCLYRFRVHG 87 (121)
Q Consensus 60 ~~~~V~l~i~SN~Gn~~YTClYR~RVHG 87 (121)
..++|+|..++-+| +-|+ ||-|.|
T Consensus 134 ~ARyVRi~p~~~~~---~~~l-R~ElyG 157 (158)
T 3bn6_A 134 QARFVRIQPVAWHN---RITL-RVELLG 157 (158)
T ss_dssp EEEEEEEEEEEEES---SCEE-EEEEEE
T ss_pred EEEEEEEEEEEcCC---eeEE-EEEEEc
Confidence 56899999999776 5676 999987
No 28
>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein initiative; 1.90A {Bacteroides thetaiotaomicron}
Probab=35.04 E-value=41 Score=28.18 Aligned_cols=30 Identities=17% Similarity=0.103 Sum_probs=25.1
Q ss_pred cccEEEEEEecCCCCCCCceEEEEEEeceeCCC
Q psy13340 60 TFDMVELKILSNHGNIEYTCLYRFRVHGNLAPS 92 (121)
Q Consensus 60 ~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~~~ 92 (121)
..++|+|+|+++-|.+ ||+-|+|++.+..-
T Consensus 431 ~aryVRl~i~~~~g~p---~Ise~~Vy~a~~~~ 460 (469)
T 3eyp_A 431 KAKQVRLRIQDGKACP---AIHTFGVYKQSPVF 460 (469)
T ss_dssp EEEEEEEEEEEESSSC---EEEEEEEECCCTTC
T ss_pred eEEEEEEEEEcCCCCe---EEEEEEEEcCCccc
Confidence 5689999999988854 89999999876654
No 29
>3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor complex; HET: DFU; 1.60A {Bifidobacterium longum subsp} PDB: 3mo4_A* 3uet_A*
Probab=34.44 E-value=1.3e+02 Score=25.29 Aligned_cols=24 Identities=13% Similarity=0.011 Sum_probs=21.0
Q ss_pred cccEEEEEEecCCCCCCCceEEEEEEe
Q psy13340 60 TFDMVELKILSNHGNIEYTCLYRFRVH 86 (121)
Q Consensus 60 ~~~~V~l~i~SN~Gn~~YTClYR~RVH 86 (121)
..++|+|+|++.-|.+ ||.-|+|+
T Consensus 453 ~ar~VRl~I~~s~~~p---~Ise~~vY 476 (478)
T 3ues_A 453 EVSSVTLHVDGSRLAP---MISRAAAV 476 (478)
T ss_dssp EEEEEEEEEEEESSSC---CEEEEEEE
T ss_pred eeEEEEEEEeccCCCe---EEEEEEEE
Confidence 5689999999998865 89999997
No 30
>2wuh_A Discoidin domain receptor 2; receptor-peptide complex, transferase, nucleotide-binding, tyrosine-protein kinase; 1.60A {Homo sapiens} PDB: 2z4f_A
Probab=29.52 E-value=73 Score=22.76 Aligned_cols=30 Identities=17% Similarity=0.323 Sum_probs=22.9
Q ss_pred cccEEEEEEecCCCCCCCceEEEEEEeceeCCC
Q psy13340 60 TFDMVELKILSNHGNIEYTCLYRFRVHGNLAPS 92 (121)
Q Consensus 60 ~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~~~ 92 (121)
..++|+|..++=++ ...|+ ||-|.|-...+
T Consensus 148 ~ARyVRi~p~~w~~--~~i~l-RvElyGC~~~d 177 (178)
T 2wuh_A 148 VARFVRFIPVTDHS--MNVCM-RVELYGCVWLD 177 (178)
T ss_dssp EEEEEEEEEECSSC--BCCCB-EEEEEEEECC-
T ss_pred EEEEEEEEEEeecC--CCeEE-EEEEeccccCC
Confidence 56899999998665 25676 99999987654
No 31
>3enb_A PRE-mRNA-processing-splicing factor 8; PRP8 domain IV, beta finger, RNAse H, spliceosome, U5-220K, mutation, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: c.55.3.14 PDB: 3lru_A
Probab=29.41 E-value=9.2 Score=29.77 Aligned_cols=14 Identities=29% Similarity=0.603 Sum_probs=11.6
Q ss_pred CCceEEEEEEecee
Q psy13340 76 EYTCLYRFRVHGNL 89 (121)
Q Consensus 76 ~YTClYR~RVHG~~ 89 (121)
+-||+|||.+|-.-
T Consensus 13 DDtnvYrvt~h~T~ 26 (222)
T 3enb_A 13 DDTNVYRVTIHKTF 26 (222)
T ss_dssp ECTTSSEEEEEECT
T ss_pred eCCcEEEEEEEecc
Confidence 57999999999653
No 32
>1czt_A Protein (coagulation factor V); membrane-binding, discoidin family, calcium- independent, blood clotting; 1.87A {Homo sapiens} SCOP: b.18.1.2 PDB: 1czs_A 1czv_A
Probab=29.19 E-value=65 Score=22.35 Aligned_cols=26 Identities=12% Similarity=0.068 Sum_probs=20.8
Q ss_pred cccEEEEEEecCCCCCCCceEEEEEEecee
Q psy13340 60 TFDMVELKILSNHGNIEYTCLYRFRVHGNL 89 (121)
Q Consensus 60 ~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~ 89 (121)
..++|+|..++-+| +.|+ ||-|.|-.
T Consensus 133 ~ARyvRi~p~~w~~---~~~~-R~ElyGc~ 158 (160)
T 1czt_A 133 ISRFIRVIPKTWNQ---SITL-RLELFGCD 158 (160)
T ss_dssp EEEEEEEEEEEEES---SCEE-EEEEEEEE
T ss_pred EEEEEEEEEEEeCC---ceEE-EEEEEeEe
Confidence 56899999999776 4564 99999964
No 33
>4gwi_A Lectinolysin, platelet aggregation factor SM-HPAF; cholesterol-dependent cytolysins, lewis antigens, F-type LEC glycan binding; HET: BDZ; 1.60A {Streptococcus mitis} PDB: 4gwj_A* 3lei_A* 3leg_A* 3le0_A* 3lek_A*
Probab=27.63 E-value=1.5e+02 Score=20.46 Aligned_cols=40 Identities=8% Similarity=-0.025 Sum_probs=28.8
Q ss_pred CceeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEeceeCC
Q psy13340 47 PTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAP 91 (121)
Q Consensus 47 ~~iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~~ 91 (121)
...+++.++. ...++|+|++..+- .+-.|+-|.|+|.+.+
T Consensus 110 ~~~~~i~~~~--~~gRYVrv~~~~~~---~~lsL~EveVyg~~~~ 149 (153)
T 4gwi_A 110 KAELEVFFTA--KDARYVKVELKTKN---TPLSLAEVEVFRSATT 149 (153)
T ss_dssp CSEEEEEEEE--EEEEEEEEEECSSS---BCCCEEEEEEEEBC--
T ss_pred CCEEEEEeCC--ceEEEEEEEEEcCC---CceEEEEEEEECcccc
Confidence 3466776643 46799999998653 4788999999998754
No 34
>3e9l_A PRE-mRNA-processing-splicing factor 8; nucleotidyl transfer, disease mutation, MRN splicing, nucleus, phosphoprotein, retinitis pigmentosa; 1.95A {Homo sapiens} SCOP: c.55.3.14
Probab=24.76 E-value=13 Score=29.56 Aligned_cols=14 Identities=29% Similarity=0.603 Sum_probs=11.7
Q ss_pred CCceEEEEEEecee
Q psy13340 76 EYTCLYRFRVHGNL 89 (121)
Q Consensus 76 ~YTClYR~RVHG~~ 89 (121)
+-||+|||.+|-.-
T Consensus 22 DDtnvYrvt~h~T~ 35 (257)
T 3e9l_A 22 DDTNVYRVTIHKTF 35 (257)
T ss_dssp ECTTSSEEEEEECS
T ss_pred eCCcEEEEEEEecc
Confidence 67999999999653
No 35
>3sbt_A PRE-mRNA-splicing factor 8; rnaseh like domain, VHS like domain, U5 snRNP assembly; 1.80A {Saccharomyces cerevisiae} SCOP: c.55.3.14 PDB: 3e66_A 3e9o_A* 3e9p_A
Probab=24.63 E-value=12 Score=29.74 Aligned_cols=14 Identities=36% Similarity=0.610 Sum_probs=11.7
Q ss_pred CCceEEEEEEecee
Q psy13340 76 EYTCLYRFRVHGNL 89 (121)
Q Consensus 76 ~YTClYR~RVHG~~ 89 (121)
+-||+|||.+|-.-
T Consensus 21 DDtnvYrvt~hkT~ 34 (260)
T 3sbt_A 21 DDTNVYRVTVHKTF 34 (260)
T ss_dssp ECTTTSEEEEEECT
T ss_pred eCCcEEEEEEEecc
Confidence 67999999999653
No 36
>2vm9_A Discoidin-2, discoidin II; DDR, lectin, aggregation, cell adhesion; 1.75A {Dictyostelium discoideum} PDB: 2vmc_A* 2vmd_A* 2vme_A*
Probab=24.26 E-value=1.2e+02 Score=23.02 Aligned_cols=30 Identities=10% Similarity=0.041 Sum_probs=24.9
Q ss_pred cccEEEEEEecCCCCCCCceEEEEEEeceeCCCC
Q psy13340 60 TFDMVELKILSNHGNIEYTCLYRFRVHGNLAPSP 93 (121)
Q Consensus 60 ~~~~V~l~i~SN~Gn~~YTClYR~RVHG~~~~~~ 93 (121)
..++|+|..++-+| +.|+ ||-|+|-...+.
T Consensus 130 ~ARyVRi~p~~w~~---~i~l-R~El~Gc~~~~~ 159 (257)
T 2vm9_A 130 KARSIAIHPQTYNN---HISL-RWELYALPVKSY 159 (257)
T ss_dssp EEEEEEEEEEEEES---SCEE-EEEEEECCCCTT
T ss_pred eEEEEEeeeeeecC---ceEE-EEEeccCCcccc
Confidence 56899999999887 4677 999999887654
No 37
>2j22_A Fucolectin-related protein; carbohydrate-binding protein, carbohydrate binding protein; 1.8A {Streptococcus pneumoniae}
Probab=21.80 E-value=86 Score=21.65 Aligned_cols=35 Identities=11% Similarity=-0.159 Sum_probs=24.6
Q ss_pred eeEEEecCCCccccEEEEEEecCCCCCCCceEEEEEEece
Q psy13340 49 LQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGN 88 (121)
Q Consensus 49 iQtF~v~~~~~~~~~V~l~i~SN~Gn~~YTClYR~RVHG~ 88 (121)
..+|.++. ..-++|+|++. |...+.-|+-|.|+|.
T Consensus 113 ~~~~~~~~--~~gRYVrv~~~---g~~~~lsL~EveVyg~ 147 (148)
T 2j22_A 113 NLSIDLKG--LKGKKVRISLR---SAGIPLSLAEVEVYTY 147 (148)
T ss_dssp EEEEEEEE--EEEEEEEEEES---STTCCCCEEEEEEEEC
T ss_pred EEEEEeCC--eeEEEEEEEEE---CCCCceEEEEEEEEec
Confidence 34444422 35689999986 5456888999999985
Done!