RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13340
         (121 letters)



>4dxt_A SUN domain-containing protein 2; beta-sandwich, LINC complex,
           structural protein; 2.22A {Homo sapiens} PDB: 3unp_A
           4dxr_A* 4dxs_A*
          Length = 198

 Score =  118 bits (296), Expect = 7e-35
 Identities = 46/91 (50%), Positives = 61/91 (67%), Gaps = 1/91 (1%)

Query: 1   MEHIPKTLTPNGIIDSAPKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFE-AKMVAD 59
           +EH+PK L+PN  I SAPK FA++G  E   +  TLLG+F YD +G  +Q F        
Sbjct: 107 LEHVPKALSPNSTISSAPKDFAIFGFDEDLQQEGTLLGKFTYDQDGEPIQTFHFQAPTMA 166

Query: 60  TFDMVELKILSNHGNIEYTCLYRFRVHGNLA 90
           T+ +VEL+IL+N G+ EYTC+YRFRVHG  A
Sbjct: 167 TYQVVELRILTNWGHPEYTCIYRFRVHGEPA 197


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.0 bits (67), Expect = 0.20
 Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 23/93 (24%)

Query: 9   TPNGIIDSAPKK----FAVWG-----------LREKYDENPTLLGEFMYDSEGPTLQYFE 53
           + + +  +  +      A++G           LR+ Y     L+G+ +      TL    
Sbjct: 141 SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLI-KFSAETLSELI 199

Query: 54  A------KMVADTFDMVE-LKILSNHGNIEYTC 79
                  K+     +++E L+  SN  + +Y  
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232



 Score = 25.0 bits (54), Expect = 8.3
 Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 29/94 (30%)

Query: 24  WGLREKYDENPTLL--GEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEYTCLY 81
           +  R      P  L  G   +    PT  +F A  + + F     KIL       +    
Sbjct: 4   YSTR------PLTLSHGSLEHVLLVPTASFFIASQLQEQF----NKILPEPTE-GFA--- 49

Query: 82  RFRVHGNLAPSPSPVHTYNRFSSANHNTLHHMTS 115
                 +  P+ +P     +F       L +++S
Sbjct: 50  -----ADDEPT-TPAELVGKF-------LGYVSS 70


>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas
          aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A*
          Length = 298

 Score = 28.1 bits (62), Expect = 0.69
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 66 LKILSNHGNIEYTCLYRFRVHGNLAPSP 93
          L +L+ +G++    LYR R      P P
Sbjct: 32 LALLAQYGSLRIAGLYRVRYDRTPEPQP 59


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 24.5 bits (52), Expect = 8.8
 Identities = 6/18 (33%), Positives = 7/18 (38%), Gaps = 5/18 (27%)

Query: 6  KTLTPNGIIDSAPKKFAV 23
          K        DSAP   A+
Sbjct: 30 KLYAD----DSAP-ALAI 42


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.134    0.411 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,884,222
Number of extensions: 98577
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 8
Length of query: 121
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 39
Effective length of database: 4,412,271
Effective search space: 172078569
Effective search space used: 172078569
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.9 bits)