RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13340
         (121 letters)



>d1jhja_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting
           complex {Human (Homo sapiens) [TaxId: 9606]}
          Length = 161

 Score = 25.0 bits (54), Expect = 2.3
 Identities = 11/70 (15%), Positives = 27/70 (38%)

Query: 18  PKKFAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEY 77
           P K +V      ++       E +  S    +   +         M+++ +L+NH N   
Sbjct: 90  PSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPTRTFMIQIAVLANHQNGRD 149

Query: 78  TCLYRFRVHG 87
           T + + +++ 
Sbjct: 150 THMRQIKIYT 159


>d1bf2a1 b.1.18.2 (A:1-162) Isoamylase, N-terminal domain N
           {Pseudomonas amyloderamosa [TaxId: 32043]}
          Length = 162

 Score = 24.8 bits (53), Expect = 2.6
 Identities = 11/103 (10%), Positives = 25/103 (24%), Gaps = 12/103 (11%)

Query: 21  FAVWGLREKYDENPTLLGEFMYDSEGPTLQYFEAKMVADTFDMVELKILSNHGNIEY--- 77
           F V+           L           +  Y    +      +  + +  +         
Sbjct: 20  FRVYS---SQATRIVLYLYSAGYGVQESATY---TLSPAGSGVWAVTVPVSSIKAAGITG 73

Query: 78  TCLYRFRVHGNLAPSPSPVHTYNRFSSANHNTLHHMTSSKYNP 120
              Y +R  G   P  S     ++    +    +     ++NP
Sbjct: 74  AVYYGYRAWGPNWPYASNWGKGSQAGFVSDVDANGD---RFNP 113


>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase
           {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}
          Length = 170

 Score = 24.4 bits (52), Expect = 3.8
 Identities = 10/66 (15%), Positives = 21/66 (31%)

Query: 49  LQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPSPSPVHTYNRFSSANHN 108
           L++  A+        V   I   HG+ E        + G      +P+  ++   +    
Sbjct: 8   LRFLIAQQTGVNVKNVHAYIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKRE 67

Query: 109 TLHHMT 114
            +H   
Sbjct: 68  EIHQEV 73


>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma
           gondii [TaxId: 5811]}
          Length = 174

 Score = 23.7 bits (50), Expect = 7.6
 Identities = 6/65 (9%), Positives = 18/65 (27%)

Query: 49  LQYFEAKMVADTFDMVELKILSNHGNIEYTCLYRFRVHGNLAPSPSPVHTYNRFSSANHN 108
            + + A  ++ +   V+  ++  HG+     +    V+G                     
Sbjct: 9   FRRYVADALSVSPRDVQATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIA 68

Query: 109 TLHHM 113
               +
Sbjct: 69  EHTKV 73


>d1gqpa_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting
           complex {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 194

 Score = 23.4 bits (50), Expect = 8.4
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 63  MVELKILSNHGNIEYTCLYRFRVHG 87
            + L    NH N + T L   R++ 
Sbjct: 168 FIRLLFPVNHENGKDTHLRGIRLYV 192


>d1e42a2 d.105.1.1 (A:825-937) Beta2-adaptin AP2, C-terminal
          subdomain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 113

 Score = 23.2 bits (50), Expect = 9.2
 Identities = 8/33 (24%), Positives = 15/33 (45%)

Query: 43 DSEGPTLQYFEAKMVADTFDMVELKILSNHGNI 75
          + EG  + Y   K+    + + EL+I   + N 
Sbjct: 56 NVEGQDMLYQSLKLTNGIWILAELRIQPGNPNY 88


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.411 

Gapped
Lambda     K      H
   0.267   0.0433    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 469,713
Number of extensions: 19755
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 8
Length of query: 121
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 46
Effective length of database: 1,377,846
Effective search space: 63380916
Effective search space used: 63380916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.6 bits)