Query psy13343
Match_columns 396
No_of_seqs 284 out of 1333
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 17:01:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13343.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13343hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lef_A LEF-1 HMG, protein (lym 99.9 1.5E-25 5.2E-30 180.8 11.5 86 81-166 1-86 (86)
2 3u2b_C Transcription factor SO 99.9 2.7E-25 9.2E-30 175.8 10.7 79 81-159 1-79 (79)
3 1j46_A SRY, sex-determining re 99.9 3.1E-25 1.1E-29 178.7 11.2 83 80-162 2-84 (85)
4 3f27_D Transcription factor SO 99.9 4.8E-25 1.6E-29 176.1 10.6 81 79-159 3-83 (83)
5 1gt0_D Transcription factor SO 99.9 1.1E-24 3.7E-29 173.1 10.8 79 81-159 1-79 (80)
6 1i11_A Transcription factor SO 99.9 4.7E-25 1.6E-29 175.8 8.7 79 80-158 2-80 (81)
7 4euw_A Transcription factor SO 99.9 9.8E-25 3.4E-29 183.4 10.5 86 74-159 21-106 (106)
8 1hry_A Human SRY; DNA, DNA-bin 99.9 1.9E-24 6.6E-29 169.9 9.5 76 79-154 1-76 (76)
9 2e6o_A HMG box-containing prot 99.9 4.4E-24 1.5E-28 172.9 11.8 79 74-152 9-87 (87)
10 1wz6_A HMG-box transcription f 99.9 6.5E-24 2.2E-28 169.6 8.5 79 78-156 3-81 (82)
11 1k99_A Upstream binding factor 99.9 4.5E-23 1.5E-27 171.3 8.7 84 74-157 2-92 (99)
12 4a3n_A Transcription factor SO 99.9 1.9E-22 6.4E-27 156.0 8.5 71 81-151 1-71 (71)
13 1hme_A High mobility group pro 99.9 4.1E-22 1.4E-26 156.9 9.7 76 77-152 1-76 (77)
14 2co9_A Thymus high mobility gr 99.9 1.5E-22 5.3E-27 168.6 7.0 84 73-156 8-91 (102)
15 2crj_A SWI/SNF-related matrix- 99.9 1.6E-22 5.5E-27 165.3 6.1 81 78-158 3-83 (92)
16 2eqz_A High mobility group pro 99.9 1E-21 3.5E-26 158.4 8.9 80 72-151 5-86 (86)
17 2cs1_A PMS1 protein homolog 1; 99.8 1.5E-21 5.1E-26 159.5 6.9 78 78-155 3-80 (92)
18 2gzk_A Sex-determining region 99.8 4.1E-21 1.4E-25 170.2 10.0 98 80-177 2-101 (159)
19 1wgf_A Upstream binding factor 99.8 2.7E-21 9.3E-26 157.5 7.8 78 73-150 11-88 (90)
20 1aab_A High mobility group pro 99.8 3.8E-21 1.3E-25 153.8 7.0 76 77-152 2-79 (83)
21 2yrq_A High mobility group pro 99.8 7.8E-21 2.7E-25 171.0 8.7 105 73-177 6-114 (173)
22 1wxl_A Single-strand recogniti 99.8 1.3E-20 4.5E-25 147.4 8.2 71 80-152 1-71 (73)
23 1cg7_A Protein (NON histone pr 99.8 1.2E-21 4E-26 160.6 1.9 79 73-151 11-89 (93)
24 1ckt_A High mobility group 1 p 99.8 2.1E-20 7.2E-25 144.8 8.2 69 82-150 1-71 (71)
25 2lhj_A High mobility group pro 99.8 2.3E-21 8E-26 159.8 1.2 80 73-152 13-94 (97)
26 3nm9_A HMG-D, high mobility gr 99.8 1.9E-20 6.5E-25 146.5 6.0 69 81-151 2-70 (73)
27 3tmm_A Transcription factor A, 99.8 2.2E-20 7.7E-25 177.0 1.0 101 77-177 36-159 (238)
28 2d7l_A WD repeat and HMG-box D 99.8 1.8E-19 6.1E-24 145.2 5.0 62 79-140 2-64 (81)
29 1v64_A Nucleolar transcription 99.8 3.6E-19 1.2E-23 150.2 6.9 78 72-153 6-84 (108)
30 2yrq_A High mobility group pro 99.8 4.5E-19 1.5E-23 159.5 7.7 79 74-152 93-171 (173)
31 2gzk_A Sex-determining region 99.8 7.7E-19 2.6E-23 155.6 7.9 79 74-152 80-158 (159)
32 3fgh_A Transcription factor A, 99.8 5E-19 1.7E-23 136.1 5.8 66 81-150 1-66 (67)
33 3tq6_A Transcription factor A, 99.7 1.7E-19 5.8E-24 168.5 1.9 99 79-177 6-127 (214)
34 1l8y_A Upstream binding factor 99.7 2.8E-18 9.6E-23 141.5 8.0 71 81-152 3-73 (91)
35 2cto_A Novel protein; high mob 99.7 7.1E-18 2.4E-22 139.5 6.5 68 78-147 6-76 (93)
36 1v63_A Nucleolar transcription 99.7 6.7E-18 2.3E-22 140.8 6.2 72 79-152 5-76 (101)
37 2yuk_A Myeloid/lymphoid or mix 99.7 1.1E-18 3.7E-23 143.7 0.9 70 73-146 13-84 (90)
38 3tmm_A Transcription factor A, 99.6 1.6E-16 5.4E-21 150.6 -2.1 73 77-153 141-213 (238)
39 3tq6_A Transcription factor A, 99.6 2.2E-16 7.4E-21 147.5 -1.2 73 77-153 109-181 (214)
40 2qgu_A Probable signal peptide 61.3 7.8 0.00027 35.4 4.4 47 106-152 70-118 (211)
41 2o37_A Protein SIS1; HSP40, J- 55.7 19 0.00066 28.2 5.4 43 94-136 26-70 (92)
42 2yua_A Williams-beuren syndrom 54.1 19 0.00064 28.7 5.1 41 94-134 35-80 (99)
43 1hdj_A Human HSP40, HDJ-1; mol 46.3 36 0.0012 25.5 5.3 39 94-132 21-63 (77)
44 2dn9_A DNAJ homolog subfamily 45.3 26 0.0009 26.3 4.4 38 94-131 25-67 (79)
45 2och_A Hypothetical protein DN 43.3 41 0.0014 25.0 5.2 40 94-133 26-67 (73)
46 2ctq_A DNAJ homolog subfamily 42.7 35 0.0012 27.7 5.1 43 94-136 38-85 (112)
47 2cug_A Mkiaa0962 protein; DNAJ 42.5 36 0.0012 26.3 4.9 38 94-131 35-76 (88)
48 2ctw_A DNAJ homolog subfamily 41.1 48 0.0017 26.8 5.7 42 94-135 35-81 (109)
49 2ctp_A DNAJ homolog subfamily 40.7 37 0.0013 25.5 4.6 38 94-131 25-66 (78)
50 2ctr_A DNAJ homolog subfamily 38.0 33 0.0011 26.6 4.0 41 94-134 25-69 (88)
51 2dmx_A DNAJ homolog subfamily 37.0 43 0.0015 26.0 4.6 37 94-130 27-69 (92)
52 2lgw_A DNAJ homolog subfamily 34.4 63 0.0022 25.8 5.3 42 94-135 20-67 (99)
53 2ej7_A HCG3 gene; HCG3 protein 30.7 41 0.0014 25.4 3.4 38 94-131 27-70 (82)
54 2ys8_A RAB-related GTP-binding 28.7 60 0.0021 25.3 4.2 37 94-130 45-85 (90)
55 1wjz_A 1700030A21RIK protein; 23.0 53 0.0018 25.4 2.8 37 94-130 34-81 (94)
56 2l6l_A DNAJ homolog subfamily 22.8 1.2E+02 0.0039 25.8 5.2 41 94-134 28-79 (155)
57 2e9x_A DNA replication complex 22.6 45 0.0015 28.7 2.5 59 82-148 71-129 (149)
58 1j1d_B Troponin T, TNT; THIN f 20.6 2.2E+02 0.0076 23.5 6.3 39 106-144 40-78 (106)
No 1
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.93 E-value=1.5e-25 Score=180.77 Aligned_cols=86 Identities=24% Similarity=0.499 Sum_probs=80.7
Q ss_pred CCCCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCCCCCCcccchh
Q psy13343 81 DRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKT 160 (396)
Q Consensus 81 ~kpKRPmNAFmLF~ke~R~kik~enP~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Yk~rPrkkkk~ 160 (396)
.+||||+||||||++++|.+|+++||++++.||+++||++|++|+++||++|+++|++++++|.++||+|+|+|++++++
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~~~~~k 80 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKK 80 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSCSSTTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCCc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999988666
Q ss_pred ccccCC
Q psy13343 161 LLKKDK 166 (396)
Q Consensus 161 ~~kk~k 166 (396)
++||+|
T Consensus 81 krkkd~ 86 (86)
T 2lef_A 81 KRKREK 86 (86)
T ss_dssp CSSCCC
T ss_pred cccccC
Confidence 655554
No 2
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.92 E-value=2.7e-25 Score=175.78 Aligned_cols=79 Identities=63% Similarity=1.111 Sum_probs=74.9
Q ss_pred CCCCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCCCCCCcccch
Q psy13343 81 DRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTK 159 (396)
Q Consensus 81 ~kpKRPmNAFmLF~ke~R~kik~enP~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Yk~rPrkkkk 159 (396)
++||||+||||||++++|++|+.++|++++.||+++||++|++|+++||++|+++|++++++|.+++|+|+|+|+|+.|
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky~Prk~~k 79 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYRPRKKVK 79 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCCCCCC---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999998754
No 3
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.92 E-value=3.1e-25 Score=178.75 Aligned_cols=83 Identities=65% Similarity=1.093 Sum_probs=79.9
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCCCCCCcccch
Q psy13343 80 IDRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTK 159 (396)
Q Consensus 80 ~~kpKRPmNAFmLF~ke~R~kik~enP~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Yk~rPrkkkk 159 (396)
+++||||+||||||++++|.+|+.+||++++.||+++||++|++|+++||++|+++|++++++|.++||+|+|+|+|+++
T Consensus 2 p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~prr~~~ 81 (85)
T 1j46_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKAK 81 (85)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCCCCC
T ss_pred cCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccCCCCccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred hcc
Q psy13343 160 TLL 162 (396)
Q Consensus 160 ~~~ 162 (396)
+.+
T Consensus 82 ~~~ 84 (85)
T 1j46_A 82 MLP 84 (85)
T ss_dssp CCC
T ss_pred ccc
Confidence 654
No 4
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.92 E-value=4.8e-25 Score=176.09 Aligned_cols=81 Identities=56% Similarity=1.113 Sum_probs=73.6
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCCCCCCcccc
Q psy13343 79 AIDRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDYKYRPRRKT 158 (396)
Q Consensus 79 ~~~kpKRPmNAFmLF~ke~R~kik~enP~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Yk~rPrkkk 158 (396)
..++||||+||||||++++|++|+.+||++++.||+++||++|++|+++||++|+++|++++++|.+++|+|+|+|+|++
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~P~~kk 82 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRK 82 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCC--
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCCccCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred h
Q psy13343 159 K 159 (396)
Q Consensus 159 k 159 (396)
+
T Consensus 83 ~ 83 (83)
T 3f27_D 83 Q 83 (83)
T ss_dssp -
T ss_pred C
Confidence 4
No 5
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.91 E-value=1.1e-24 Score=173.14 Aligned_cols=79 Identities=94% Similarity=1.460 Sum_probs=76.9
Q ss_pred CCCCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCCCCCCcccch
Q psy13343 81 DRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTK 159 (396)
Q Consensus 81 ~kpKRPmNAFmLF~ke~R~kik~enP~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Yk~rPrkkkk 159 (396)
++||||+||||||++++|.+|+.+||++++.||+++||++|++|+++||++|+++|++++++|.+++|+|+|+|+|++|
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~r~~k 79 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTK 79 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccCCCCCCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999998865
No 6
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.91 E-value=4.7e-25 Score=175.82 Aligned_cols=79 Identities=51% Similarity=0.946 Sum_probs=69.3
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCCCCCCcccc
Q psy13343 80 IDRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDYKYRPRRKT 158 (396)
Q Consensus 80 ~~kpKRPmNAFmLF~ke~R~kik~enP~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Yk~rPrkkk 158 (396)
.++||||+||||||++++|.+|+++||++++.||+++||++|++|+++||++|+++|++++++|.++||+|+|+|+|++
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~pr~~~ 80 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKR 80 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC--------
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeccCCCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999998874
No 7
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.91 E-value=9.8e-25 Score=183.39 Aligned_cols=86 Identities=56% Similarity=1.035 Sum_probs=71.7
Q ss_pred CcCcCCCCCCCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCCCCC
Q psy13343 74 SKNQNAIDRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDYKYR 153 (396)
Q Consensus 74 ~Kkkk~~~kpKRPmNAFmLF~ke~R~kik~enP~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Yk~r 153 (396)
....+++++||||+|||||||+++|++|++++|++++.||+|+||++|+.|+++||++|+++|+++|++|++++|+|+|+
T Consensus 21 ~~~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky~ 100 (106)
T 4euw_A 21 FQSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQ 100 (106)
T ss_dssp -------CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC-
T ss_pred hhccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCcC
Confidence 34456889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ccccch
Q psy13343 154 PRRKTK 159 (396)
Q Consensus 154 Prkkkk 159 (396)
|+||++
T Consensus 101 PrrkKs 106 (106)
T 4euw_A 101 PRRRKS 106 (106)
T ss_dssp ------
T ss_pred CCCCCC
Confidence 998863
No 8
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.91 E-value=1.9e-24 Score=169.90 Aligned_cols=76 Identities=64% Similarity=1.118 Sum_probs=72.4
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCCCCCC
Q psy13343 79 AIDRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDYKYRP 154 (396)
Q Consensus 79 ~~~kpKRPmNAFmLF~ke~R~kik~enP~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Yk~rP 154 (396)
|+++||||+||||||++++|.+|+++||++++.||+|+||++|++|+++||++|+++|+++|++|+++||+|+|+|
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~P 76 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP 76 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCCCC-
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCc
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999987
No 9
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.91 E-value=4.4e-24 Score=172.90 Aligned_cols=79 Identities=32% Similarity=0.494 Sum_probs=76.2
Q ss_pred CcCcCCCCCCCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCCCC
Q psy13343 74 SKNQNAIDRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDYKY 152 (396)
Q Consensus 74 ~Kkkk~~~kpKRPmNAFmLF~ke~R~kik~enP~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Yk~ 152 (396)
+++++++++||||+||||||++++|.+|+.+||++++.||+|+||++|++|+++||++|+++|+++|++|+++||+|+|
T Consensus 9 ~~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yky 87 (87)
T 2e6o_A 9 TVSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCWK 87 (87)
T ss_dssp SCCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence 3556799999999999999999999999999999999999999999999999999999999999999999999999997
No 10
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.90 E-value=6.5e-24 Score=169.56 Aligned_cols=79 Identities=29% Similarity=0.609 Sum_probs=77.0
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCCCCCCcc
Q psy13343 78 NAIDRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDYKYRPRR 156 (396)
Q Consensus 78 k~~~kpKRPmNAFmLF~ke~R~kik~enP~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Yk~rPrk 156 (396)
.++++||||+||||||++++|.+|+++||++++.||+++||++|++|+++||++|+++|+++|++|++++++|+|+|+|
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~p~~ 81 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSGPSS 81 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCCTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCC
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999999987
No 11
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.88 E-value=4.5e-23 Score=171.28 Aligned_cols=84 Identities=25% Similarity=0.415 Sum_probs=78.2
Q ss_pred CcCcCCCCCCCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHH-------HHHH
Q psy13343 74 SKNQNAIDRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAV-------HMKE 146 (396)
Q Consensus 74 ~Kkkk~~~kpKRPmNAFmLF~ke~R~kik~enP~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~-------h~ke 146 (396)
+|+++|+++||||+||||||++++|.+|+++||++++.||+++||++|++|+++||++|+++|++++++ |++.
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~~ 81 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRED 81 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGGC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456689999999999999999999999999999999999999999999999999999999999999999 6777
Q ss_pred CCCCCCCCccc
Q psy13343 147 HPDYKYRPRRK 157 (396)
Q Consensus 147 ~P~Yk~rPrkk 157 (396)
+|+|+|+|++.
T Consensus 82 ~P~~~~~~~~~ 92 (99)
T 1k99_A 82 HPDLIQNAKKL 92 (99)
T ss_dssp CCCCSCCCCC-
T ss_pred CCCccCCCccc
Confidence 89999988765
No 12
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.87 E-value=1.9e-22 Score=155.97 Aligned_cols=71 Identities=55% Similarity=1.100 Sum_probs=63.8
Q ss_pred CCCCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCCC
Q psy13343 81 DRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDYK 151 (396)
Q Consensus 81 ~kpKRPmNAFmLF~ke~R~kik~enP~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Yk 151 (396)
++||||+||||||++++|++|+.++|++++.||+++||++|++|+++||++|+++|++++++|++++|+||
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999996
No 13
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.87 E-value=4.1e-22 Score=156.95 Aligned_cols=76 Identities=24% Similarity=0.474 Sum_probs=73.8
Q ss_pred cCCCCCCCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCCCC
Q psy13343 77 QNAIDRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDYKY 152 (396)
Q Consensus 77 kk~~~kpKRPmNAFmLF~ke~R~kik~enP~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Yk~ 152 (396)
++|+++||||+||||||++++|.+|+.+||++++.||+++||++|+.|+++||++|+++|++++++|.+++++|+.
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 76 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 76 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3689999999999999999999999999999999999999999999999999999999999999999999999974
No 14
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.86 E-value=1.5e-22 Score=168.62 Aligned_cols=84 Identities=18% Similarity=0.361 Sum_probs=78.6
Q ss_pred CCcCcCCCCCCCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCCCC
Q psy13343 73 NSKNQNAIDRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDYKY 152 (396)
Q Consensus 73 ~~Kkkk~~~kpKRPmNAFmLF~ke~R~kik~enP~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Yk~ 152 (396)
.+|+++|+++||||+||||||++++|.+|+.+||++++.||+++||++|++|+++||++|+++|++++++|.+++++|++
T Consensus 8 ~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~ 87 (102)
T 2co9_A 8 KKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAYRA 87 (102)
T ss_dssp SCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566799999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCcc
Q psy13343 153 RPRR 156 (396)
Q Consensus 153 rPrk 156 (396)
....
T Consensus 88 ~~~~ 91 (102)
T 2co9_A 88 SLVS 91 (102)
T ss_dssp HHTS
T ss_pred hccc
Confidence 5443
No 15
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.86 E-value=1.6e-22 Score=165.29 Aligned_cols=81 Identities=26% Similarity=0.452 Sum_probs=77.4
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCCCCCCccc
Q psy13343 78 NAIDRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDYKYRPRRK 157 (396)
Q Consensus 78 k~~~kpKRPmNAFmLF~ke~R~kik~enP~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Yk~rPrkk 157 (396)
+|+++||||+||||||++++|.+|+++||++++.||+|+||++|++|+++||++|+++|+++|++|.+++++|++++..+
T Consensus 3 kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~~~~~ 82 (92)
T 2crj_A 3 SGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQSEAYK 82 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSSHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999877654
Q ss_pred c
Q psy13343 158 T 158 (396)
Q Consensus 158 k 158 (396)
.
T Consensus 83 ~ 83 (92)
T 2crj_A 83 V 83 (92)
T ss_dssp C
T ss_pred H
Confidence 3
No 16
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1e-21 Score=158.44 Aligned_cols=80 Identities=23% Similarity=0.354 Sum_probs=74.8
Q ss_pred CCCcCcCCCCCCCCCCchhHHHHHHHHHHHHhhCCCCC--HHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCC
Q psy13343 72 TNSKNQNAIDRVKRPMNAFMVWSRGQRRKMAQDNPKMH--NSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPD 149 (396)
Q Consensus 72 ~~~Kkkk~~~kpKRPmNAFmLF~ke~R~kik~enP~~~--~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~ 149 (396)
.++++++|+++||||+||||||++++|.+|+++||+++ +.||+++||++|++|+++||++|+++|++++++|.+++++
T Consensus 5 ~~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 84 (86)
T 2eqz_A 5 SSGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKD 84 (86)
T ss_dssp CSSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555689999999999999999999999999999986 6999999999999999999999999999999999999998
Q ss_pred CC
Q psy13343 150 YK 151 (396)
Q Consensus 150 Yk 151 (396)
|+
T Consensus 85 Y~ 86 (86)
T 2eqz_A 85 YG 86 (86)
T ss_dssp HC
T ss_pred cC
Confidence 85
No 17
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.5e-21 Score=159.55 Aligned_cols=78 Identities=18% Similarity=0.282 Sum_probs=74.6
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCCCCCCc
Q psy13343 78 NAIDRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDYKYRPR 155 (396)
Q Consensus 78 k~~~kpKRPmNAFmLF~ke~R~kik~enP~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Yk~rPr 155 (396)
.++++||||+||||||++++|.+|+++||++++.||+|+||++|++|+++||++|+++|+++|++|++++++|+.+..
T Consensus 3 ~~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~~ 80 (92)
T 2cs1_A 3 SGSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQES 80 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 577899999999999999999999999999999999999999999999999999999999999999999999987643
No 18
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.84 E-value=4.1e-21 Score=170.24 Aligned_cols=98 Identities=53% Similarity=0.838 Sum_probs=89.8
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCCCCCCcccch
Q psy13343 80 IDRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTK 159 (396)
Q Consensus 80 ~~kpKRPmNAFmLF~ke~R~kik~enP~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Yk~rPrkkkk 159 (396)
+++||||+||||||+++.|.+|+.+||++++.||+++||++|++|+++||++|+++|++++++|.+++++|++.++++++
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~k~~~kk 81 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRKGETKK 81 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCCCCCCGG
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhccccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999998875543
Q ss_pred --hccccCCCCCCCCCcccC
Q psy13343 160 --TLLKKDKYPLGSGNLIQN 177 (396)
Q Consensus 160 --~~~kk~k~~~~~~~~~~~ 177 (396)
+...++|+|++++++||.
T Consensus 82 ~~kdp~~pKrp~say~lf~~ 101 (159)
T 2gzk_A 82 KFKDPNAPKRPPSAFFLFCS 101 (159)
T ss_dssp GSCCTTCCCCCCCHHHHHHH
T ss_pred cccccccccccccccchhhH
Confidence 344577899999988884
No 19
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.84 E-value=2.7e-21 Score=157.55 Aligned_cols=78 Identities=22% Similarity=0.474 Sum_probs=73.3
Q ss_pred CCcCcCCCCCCCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCC
Q psy13343 73 NSKNQNAIDRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDY 150 (396)
Q Consensus 73 ~~Kkkk~~~kpKRPmNAFmLF~ke~R~kik~enP~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Y 150 (396)
..|+++|+++||||+||||||++++|.+|+++||++++.||+++||++|++|+++||++|+++|+++|++|+++|..+
T Consensus 11 ~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~~ 88 (90)
T 1wgf_A 11 QEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSGPS 88 (90)
T ss_dssp SCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCSSC
T ss_pred cCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355567999999999999999999999999999999999999999999999999999999999999999999888654
No 20
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.83 E-value=3.8e-21 Score=153.79 Aligned_cols=76 Identities=22% Similarity=0.345 Sum_probs=72.7
Q ss_pred cCCCCCCCCCCchhHHHHHHHHHHHHhhCCCCC--HHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCCCC
Q psy13343 77 QNAIDRVKRPMNAFMVWSRGQRRKMAQDNPKMH--NSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDYKY 152 (396)
Q Consensus 77 kk~~~kpKRPmNAFmLF~ke~R~kik~enP~~~--~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Yk~ 152 (396)
++|+++||||+||||||++++|.+|+.+||+++ +.||+++||++|++|+++||++|+++|+++|++|.+++++|+-
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 79 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIP 79 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 368999999999999999999999999999986 5999999999999999999999999999999999999999974
No 21
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=7.8e-21 Score=170.99 Aligned_cols=105 Identities=20% Similarity=0.246 Sum_probs=92.1
Q ss_pred CCcCcCCCCCCCCCCchhHHHHHHHHHHHHhhCCC--CCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCC
Q psy13343 73 NSKNQNAIDRVKRPMNAFMVWSRGQRRKMAQDNPK--MHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDY 150 (396)
Q Consensus 73 ~~Kkkk~~~kpKRPmNAFmLF~ke~R~kik~enP~--~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Y 150 (396)
+++.++|+++||||+||||||++++|.+|+.+||+ +++.||+++||++|+.|+++||++|+++|++++++|.+++++|
T Consensus 6 ~k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y 85 (173)
T 2yrq_A 6 SGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 85 (173)
T ss_dssp CSSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34556799999999999999999999999999999 6899999999999999999999999999999999999999999
Q ss_pred CCCCc--ccchhccccCCCCCCCCCcccC
Q psy13343 151 KYRPR--RKTKTLLKKDKYPLGSGNLIQN 177 (396)
Q Consensus 151 k~rPr--kkkk~~~kk~k~~~~~~~~~~~ 177 (396)
+.... +++++...++|+|++++++|+.
T Consensus 86 ~~~~~~~kk~~kdp~~pKrP~saf~lf~~ 114 (173)
T 2yrq_A 86 IPPKGETKKKFKDPNAPKRPPSAFFLFCS 114 (173)
T ss_dssp CCCCCCSSCSCCCSSSCCCCCCHHHHHHH
T ss_pred hhhhhhhcccccCCccccCcccHHHHHHH
Confidence 86433 2223455678899999988874
No 22
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.82 E-value=1.3e-20 Score=147.45 Aligned_cols=71 Identities=31% Similarity=0.506 Sum_probs=68.7
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCCCC
Q psy13343 80 IDRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDYKY 152 (396)
Q Consensus 80 ~~kpKRPmNAFmLF~ke~R~kik~enP~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Yk~ 152 (396)
+++||||+||||||++++|.+|+++||++++.||+|+||++|++| +||++|+++|+++|++|.+++++|+-
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~ 71 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKP 71 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTT
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999999999999999999 89999999999999999999999974
No 23
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.82 E-value=1.2e-21 Score=160.61 Aligned_cols=79 Identities=23% Similarity=0.487 Sum_probs=75.3
Q ss_pred CCcCcCCCCCCCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCCC
Q psy13343 73 NSKNQNAIDRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDYK 151 (396)
Q Consensus 73 ~~Kkkk~~~kpKRPmNAFmLF~ke~R~kik~enP~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Yk 151 (396)
.+|+++++++||||+||||||++++|.+|+.+||++++.||+++||++|++|+++||++|+++|++++++|.+++++|+
T Consensus 11 ~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y~ 89 (93)
T 1cg7_A 11 TTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELYN 89 (93)
T ss_dssp CCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHHH
T ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455679999999999999999999999999999999999999999999999999999999999999999999999996
No 24
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.82 E-value=2.1e-20 Score=144.83 Aligned_cols=69 Identities=25% Similarity=0.399 Sum_probs=66.6
Q ss_pred CCCCCCchhHHHHHHHHHHHHhhCCCCCH--HHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCC
Q psy13343 82 RVKRPMNAFMVWSRGQRRKMAQDNPKMHN--SEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDY 150 (396)
Q Consensus 82 kpKRPmNAFmLF~ke~R~kik~enP~~~~--~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Y 150 (396)
+||||+||||||++++|.+|+.+||++++ .||+|+||++|++|+++||++|+++|+++|++|.+++.+|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 58999999999999999999999999865 9999999999999999999999999999999999999987
No 25
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.81 E-value=2.3e-21 Score=159.79 Aligned_cols=80 Identities=23% Similarity=0.499 Sum_probs=75.5
Q ss_pred CCcCcCCCCCCCCCCchhHHHHHHHHHHHHhhCCCCC--HHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCC
Q psy13343 73 NSKNQNAIDRVKRPMNAFMVWSRGQRRKMAQDNPKMH--NSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDY 150 (396)
Q Consensus 73 ~~Kkkk~~~kpKRPmNAFmLF~ke~R~kik~enP~~~--~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Y 150 (396)
.+++++|+++||||+||||||++++|.+|+.+||+++ +.||+++||++|++|+++||++|+++|++++++|.+++++|
T Consensus 13 ~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~y 92 (97)
T 2lhj_A 13 PRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREKAEY 92 (97)
T ss_dssp TTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455679999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CC
Q psy13343 151 KY 152 (396)
Q Consensus 151 k~ 152 (396)
+.
T Consensus 93 ~~ 94 (97)
T 2lhj_A 93 AQ 94 (97)
T ss_dssp HH
T ss_pred Hh
Confidence 63
No 26
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.81 E-value=1.9e-20 Score=146.54 Aligned_cols=69 Identities=23% Similarity=0.573 Sum_probs=67.2
Q ss_pred CCCCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCCC
Q psy13343 81 DRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDYK 151 (396)
Q Consensus 81 ~kpKRPmNAFmLF~ke~R~kik~enP~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Yk 151 (396)
++||||+|||||||+++|.+|+++||++++.||+|+||++|++|++ |++|+++|++++++|++++++|+
T Consensus 2 ~~PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~ 70 (73)
T 3nm9_A 2 DKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFE 70 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999999999999999997 99999999999999999999996
No 27
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.77 E-value=2.2e-20 Score=177.00 Aligned_cols=101 Identities=25% Similarity=0.392 Sum_probs=87.4
Q ss_pred cCCCCCCCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCCCC--CC
Q psy13343 77 QNAIDRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDYKY--RP 154 (396)
Q Consensus 77 kk~~~kpKRPmNAFmLF~ke~R~kik~enP~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Yk~--rP 154 (396)
.+++++||||+||||||++++|.+|+++||++++.||+|+||++|+.|+++||++|+++|++++++|++++++|+- .|
T Consensus 36 ~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~~p 115 (238)
T 3tmm_A 36 SVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTP 115 (238)
T ss_dssp CHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 3578899999999999999999999999999999999999999999999999999999999999999999999952 12
Q ss_pred c---------------c------cchhccccCCCCCCCCCcccC
Q psy13343 155 R---------------R------KTKTLLKKDKYPLGSGNLIQN 177 (396)
Q Consensus 155 r---------------k------kkk~~~kk~k~~~~~~~~~~~ 177 (396)
- + +..+...++|+|++++++||.
T Consensus 116 ~~~~~~~~~~~~k~~krk~~~kkk~~kdp~~PKrP~say~lF~~ 159 (238)
T 3tmm_A 116 SQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVA 159 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhcccchhhhcccCCCCCCCcHHHHHHH
Confidence 1 0 111234468899999999885
No 28
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-19 Score=145.18 Aligned_cols=62 Identities=21% Similarity=0.442 Sum_probs=59.6
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHhhCCCCC-HHHHHHHHHHHHhhcCHHhhhhHHHHHHHHH
Q psy13343 79 AIDRVKRPMNAFMVWSRGQRRKMAQDNPKMH-NSEISKRLGAEWKLLNEQAKRPFIDEAKRLR 140 (396)
Q Consensus 79 ~~~kpKRPmNAFmLF~ke~R~kik~enP~~~-~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~K 140 (396)
+.++||||+||||||++++|.+|+.+||+++ +.||+|+||++|++|+++||++|+++|+++.
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d~ 64 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGET 64 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999998 9999999999999999999999999999984
No 29
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.77 E-value=3.6e-19 Score=150.24 Aligned_cols=78 Identities=15% Similarity=0.220 Sum_probs=72.4
Q ss_pred CCCcCcCCCCCC-CCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCC
Q psy13343 72 TNSKNQNAIDRV-KRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDY 150 (396)
Q Consensus 72 ~~~Kkkk~~~kp-KRPmNAFmLF~ke~R~kik~enP~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Y 150 (396)
...++.+++++| |||+||||||++++|.+|+ ++++.||+|+||++|++|+++||++|+++|++++++|++++++|
T Consensus 6 ~~~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y 81 (108)
T 1v64_A 6 SGQLKDKFDGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRF 81 (108)
T ss_dssp SCCSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666899999 9999999999999999987 78999999999999999999999999999999999999999999
Q ss_pred CCC
Q psy13343 151 KYR 153 (396)
Q Consensus 151 k~r 153 (396)
+..
T Consensus 82 ~~~ 84 (108)
T 1v64_A 82 LES 84 (108)
T ss_dssp HHH
T ss_pred Hhh
Confidence 753
No 30
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.5e-19 Score=159.47 Aligned_cols=79 Identities=24% Similarity=0.474 Sum_probs=75.5
Q ss_pred CcCcCCCCCCCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCCCC
Q psy13343 74 SKNQNAIDRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDYKY 152 (396)
Q Consensus 74 ~Kkkk~~~kpKRPmNAFmLF~ke~R~kik~enP~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Yk~ 152 (396)
+++.+++++||||+||||||++++|.+|+.+||++++.||+++||++|++|+++||++|+++|++++++|++++++|++
T Consensus 93 kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 171 (173)
T 2yrq_A 93 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 171 (173)
T ss_dssp SCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccCCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455789999999999999999999999999999999999999999999999999999999999999999999999976
No 31
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.76 E-value=7.7e-19 Score=155.61 Aligned_cols=79 Identities=24% Similarity=0.474 Sum_probs=75.1
Q ss_pred CcCcCCCCCCCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCCCC
Q psy13343 74 SKNQNAIDRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDYKY 152 (396)
Q Consensus 74 ~Kkkk~~~kpKRPmNAFmLF~ke~R~kik~enP~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Yk~ 152 (396)
+++.++++.||||+|||||||+++|.+|+.+||++++.||+++||++|++|+++||++|+++|++++++|.+++++|+.
T Consensus 80 kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 158 (159)
T 2gzk_A 80 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 158 (159)
T ss_dssp GGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455789999999999999999999999999999999999999999999999999999999999999999999999863
No 32
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.76 E-value=5e-19 Score=136.14 Aligned_cols=66 Identities=26% Similarity=0.410 Sum_probs=62.5
Q ss_pred CCCCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCC
Q psy13343 81 DRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDY 150 (396)
Q Consensus 81 ~kpKRPmNAFmLF~ke~R~kik~enP~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Y 150 (396)
++||||+||||||++++|.+++.++| .||+|+||++|++|+++||++|+++|+++|++|++++.+|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47999999999999999999987776 6999999999999999999999999999999999998877
No 33
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.75 E-value=1.7e-19 Score=168.47 Aligned_cols=99 Identities=25% Similarity=0.407 Sum_probs=85.7
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCCCC--CCc-
Q psy13343 79 AIDRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDYKY--RPR- 155 (396)
Q Consensus 79 ~~~kpKRPmNAFmLF~ke~R~kik~enP~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Yk~--rPr- 155 (396)
.+++||||+||||||++++|.+|+++||++++.||+|+||++|+.|+++||.+|+++|++++++|++++++|+- .|.
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~tp~q 85 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQ 85 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcccCCHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999952 121
Q ss_pred --------------c------cchhccccCCCCCCCCCcccC
Q psy13343 156 --------------R------KTKTLLKKDKYPLGSGNLIQN 177 (396)
Q Consensus 156 --------------k------kkk~~~kk~k~~~~~~~~~~~ 177 (396)
+ +..+...++|+|++++++||.
T Consensus 86 ~~~~~~~~~~~~~krk~~kkkk~~kdp~~PKrP~say~lF~~ 127 (214)
T 3tq6_A 86 IMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVA 127 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcchhhhhhhccccCcccccchhhhhHH
Confidence 0 111234568999999998885
No 34
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.74 E-value=2.8e-18 Score=141.53 Aligned_cols=71 Identities=13% Similarity=0.189 Sum_probs=69.0
Q ss_pred CCCCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCCCC
Q psy13343 81 DRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDYKY 152 (396)
Q Consensus 81 ~kpKRPmNAFmLF~ke~R~kik~enP~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Yk~ 152 (396)
++||||++||+||++++|..++.++|+ ++.||+|+||++|++|+++||++|+++|+++|++|++++.+|+.
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~ 73 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRA 73 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 579999999999999999999999999 99999999999999999999999999999999999999999974
No 35
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=7.1e-18 Score=139.46 Aligned_cols=68 Identities=18% Similarity=0.398 Sum_probs=65.2
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHH---HHHHhhcCHHhhhhHHHHHHHHHHHHHHHC
Q psy13343 78 NAIDRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRL---GAEWKLLNEQAKRPFIDEAKRLRAVHMKEH 147 (396)
Q Consensus 78 k~~~kpKRPmNAFmLF~ke~R~kik~enP~~~~~EISK~L---Ge~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~ 147 (396)
.+.++||||+||||||++++|++|+.+ ++++.||+|+| |++|++|+++||++|+++|+++|++|.++.
T Consensus 6 ~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~ 76 (93)
T 2cto_A 6 SGMPNRKASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDP 76 (93)
T ss_dssp CCCCCCCSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccc
Confidence 577899999999999999999999998 89999999999 999999999999999999999999999985
No 36
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.71 E-value=6.7e-18 Score=140.79 Aligned_cols=72 Identities=14% Similarity=0.183 Sum_probs=65.1
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCCCC
Q psy13343 79 AIDRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDYKY 152 (396)
Q Consensus 79 ~~~kpKRPmNAFmLF~ke~R~kik~enP~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Yk~ 152 (396)
...+||||+||||||+++++. ..+++++++.||+|+||++|++|+++||++|+++|+++|++|++++++|+-
T Consensus 5 ~~~~PKrP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~ 76 (101)
T 1v63_A 5 SSGPKKPPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVK 76 (101)
T ss_dssp CCSSCCCCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446799999999999999964 335566889999999999999999999999999999999999999999975
No 37
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-18 Score=143.72 Aligned_cols=70 Identities=14% Similarity=0.209 Sum_probs=65.9
Q ss_pred CCcCcCCCCCCCCCCchhHHHHHHHHHHHHhhCCCCC--HHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHH
Q psy13343 73 NSKNQNAIDRVKRPMNAFMVWSRGQRRKMAQDNPKMH--NSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKE 146 (396)
Q Consensus 73 ~~Kkkk~~~kpKRPmNAFmLF~ke~R~kik~enP~~~--~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke 146 (396)
..|+++|++.||||++||||||+++|++|+.+||+++ +.||+ ++|++|+++||++|+++|+++|++|+.+
T Consensus 13 ~~k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~~ 84 (90)
T 2yuk_A 13 TLKWEKEEALGEMATVAPVLYTNINFPNLKEEFPDWTTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRIN 84 (90)
T ss_dssp HHHHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhhccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 3566679999999999999999999999999999999 99999 9999999999999999999999999875
No 38
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.55 E-value=1.6e-16 Score=150.58 Aligned_cols=73 Identities=23% Similarity=0.379 Sum_probs=68.1
Q ss_pred cCCCCCCCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCCCCC
Q psy13343 77 QNAIDRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDYKYR 153 (396)
Q Consensus 77 kk~~~kpKRPmNAFmLF~ke~R~kik~enP~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Yk~r 153 (396)
.++++.||||+|||||||+++|.+|+.++|+ ||+|+||++|++|+++||++|+++|++++++|++++++|+.+
T Consensus 141 ~kdp~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~k 213 (238)
T 3tmm_A 141 LTLLGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ 213 (238)
T ss_dssp HHHTTCCCCCCCHHHHHHHHHTTTSCCSSHH----HHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCCCCCCCcHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578999999999999999999999876665 999999999999999999999999999999999999999875
No 39
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.55 E-value=2.2e-16 Score=147.49 Aligned_cols=73 Identities=23% Similarity=0.379 Sum_probs=68.0
Q ss_pred cCCCCCCCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCCCCCCC
Q psy13343 77 QNAIDRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHPDYKYR 153 (396)
Q Consensus 77 kk~~~kpKRPmNAFmLF~ke~R~kik~enP~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P~Yk~r 153 (396)
.++++.||||+|||||||+++|.+|+.++|+ ||+++||++|++|+++||++|+++|++++++|++++++|+..
T Consensus 109 ~kdp~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~~ 181 (214)
T 3tq6_A 109 LTLLGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ 181 (214)
T ss_dssp HHHTTCCCCCCCHHHHHHHHHTTTSSCSSHH----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccCcccccchhhhhHHHHHHhhccCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578999999999999999999999776665 999999999999999999999999999999999999999865
No 40
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=61.27 E-value=7.8 Score=35.42 Aligned_cols=47 Identities=13% Similarity=0.212 Sum_probs=38.7
Q ss_pred CCCCHHHHHHH-HHHHHhhcCHHhhhhHHHHHHH-HHHHHHHHCCCCCC
Q psy13343 106 PKMHNSEISKR-LGAEWKLLNEQAKRPFIDEAKR-LRAVHMKEHPDYKY 152 (396)
Q Consensus 106 P~~~~~EISK~-LGe~WK~LSeeEK~~Y~e~Ak~-~Ke~h~ke~P~Yk~ 152 (396)
|-.++..|++. ||.-|+.+++++|+.|.+..++ +...|-..+-.|.-
T Consensus 70 p~~D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~~ 118 (211)
T 2qgu_A 70 PRADFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVRN 118 (211)
T ss_dssp GGBCHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred hhcCHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 56788888875 5999999999999999988777 56678888887863
No 41
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=55.73 E-value=19 Score=28.19 Aligned_cols=43 Identities=23% Similarity=0.444 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhCCCCC--HHHHHHHHHHHHhhcCHHhhhhHHHHH
Q psy13343 94 SRGQRRKMAQDNPKMH--NSEISKRLGAEWKLLNEQAKRPFIDEA 136 (396)
Q Consensus 94 ~ke~R~kik~enP~~~--~~EISK~LGe~WK~LSeeEK~~Y~e~A 136 (396)
.+.+|+.++.-||+.. ..|..++|.+.|..|++.+|+.-++..
T Consensus 26 k~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~ 70 (92)
T 2o37_A 26 KKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQY 70 (92)
T ss_dssp HHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 4567777788899864 578889999999999998876554443
No 42
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.11 E-value=19 Score=28.67 Aligned_cols=41 Identities=17% Similarity=0.185 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhCCCCC-----HHHHHHHHHHHHhhcCHHhhhhHHH
Q psy13343 94 SRGQRRKMAQDNPKMH-----NSEISKRLGAEWKLLNEQAKRPFID 134 (396)
Q Consensus 94 ~ke~R~kik~enP~~~-----~~EISK~LGe~WK~LSeeEK~~Y~e 134 (396)
.+.+|+.+++-||+.. ..+..++|.+.|..|++.+|+.-++
T Consensus 35 k~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD 80 (99)
T 2yua_A 35 KAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYD 80 (99)
T ss_dssp HHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 4567777888899866 3678899999999999887764443
No 43
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=46.30 E-value=36 Score=25.50 Aligned_cols=39 Identities=23% Similarity=0.407 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhCCCCC----HHHHHHHHHHHHhhcCHHhhhhH
Q psy13343 94 SRGQRRKMAQDNPKMH----NSEISKRLGAEWKLLNEQAKRPF 132 (396)
Q Consensus 94 ~ke~R~kik~enP~~~----~~EISK~LGe~WK~LSeeEK~~Y 132 (396)
.+.+|+.++.-||+.. ..+..+.|.+.|..|++.+++.-
T Consensus 21 k~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~ 63 (77)
T 1hdj_A 21 KRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63 (77)
T ss_dssp HHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHH
Confidence 4567777788888864 57889999999999998877543
No 44
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.33 E-value=26 Score=26.34 Aligned_cols=38 Identities=16% Similarity=0.319 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhCCCCCH-----HHHHHHHHHHHhhcCHHhhhh
Q psy13343 94 SRGQRRKMAQDNPKMHN-----SEISKRLGAEWKLLNEQAKRP 131 (396)
Q Consensus 94 ~ke~R~kik~enP~~~~-----~EISK~LGe~WK~LSeeEK~~ 131 (396)
.+.+|+.++.-||+... .+..++|.+.|..|++.+++.
T Consensus 25 k~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 67 (79)
T 2dn9_A 25 KKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67 (79)
T ss_dssp HHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 45677777888898553 578889999999998877654
No 45
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=43.29 E-value=41 Score=24.96 Aligned_cols=40 Identities=18% Similarity=0.356 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhCCCCCH--HHHHHHHHHHHhhcCHHhhhhHH
Q psy13343 94 SRGQRRKMAQDNPKMHN--SEISKRLGAEWKLLNEQAKRPFI 133 (396)
Q Consensus 94 ~ke~R~kik~enP~~~~--~EISK~LGe~WK~LSeeEK~~Y~ 133 (396)
.+.+|+..+.-||+... .+..+.|.+.|..|++.+|+.-.
T Consensus 26 k~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~Y 67 (73)
T 2och_A 26 KKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIY 67 (73)
T ss_dssp HHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 45667777888998653 58889999999999988776433
No 46
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.70 E-value=35 Score=27.70 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhCCCCCH-----HHHHHHHHHHHhhcCHHhhhhHHHHH
Q psy13343 94 SRGQRRKMAQDNPKMHN-----SEISKRLGAEWKLLNEQAKRPFIDEA 136 (396)
Q Consensus 94 ~ke~R~kik~enP~~~~-----~EISK~LGe~WK~LSeeEK~~Y~e~A 136 (396)
.+.+|+..++-||+... .+..+.|.+.|..|++.+|+.-++..
T Consensus 38 k~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~ 85 (112)
T 2ctq_A 38 LAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHW 85 (112)
T ss_dssp HHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence 45677777888888653 68889999999999988876555543
No 47
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=42.47 E-value=36 Score=26.35 Aligned_cols=38 Identities=11% Similarity=0.286 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhCCCCC----HHHHHHHHHHHHhhcCHHhhhh
Q psy13343 94 SRGQRRKMAQDNPKMH----NSEISKRLGAEWKLLNEQAKRP 131 (396)
Q Consensus 94 ~ke~R~kik~enP~~~----~~EISK~LGe~WK~LSeeEK~~ 131 (396)
.+.+|+.+++-||+.. ..+..+.|.+.|..|++.+++.
T Consensus 35 k~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 76 (88)
T 2cug_A 35 KKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRT 76 (88)
T ss_dssp HHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHH
Confidence 4567777788889864 5688889999999998877654
No 48
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=41.12 E-value=48 Score=26.77 Aligned_cols=42 Identities=17% Similarity=0.316 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhCCCCCH-----HHHHHHHHHHHhhcCHHhhhhHHHH
Q psy13343 94 SRGQRRKMAQDNPKMHN-----SEISKRLGAEWKLLNEQAKRPFIDE 135 (396)
Q Consensus 94 ~ke~R~kik~enP~~~~-----~EISK~LGe~WK~LSeeEK~~Y~e~ 135 (396)
.+.+|+.+++-||+... .+..++|.+.|..|++.+|+.-.+.
T Consensus 35 k~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~ 81 (109)
T 2ctw_A 35 KKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDK 81 (109)
T ss_dssp HHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 45677777888998663 5788999999999998887765554
No 49
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.74 E-value=37 Score=25.47 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhCCCCC----HHHHHHHHHHHHhhcCHHhhhh
Q psy13343 94 SRGQRRKMAQDNPKMH----NSEISKRLGAEWKLLNEQAKRP 131 (396)
Q Consensus 94 ~ke~R~kik~enP~~~----~~EISK~LGe~WK~LSeeEK~~ 131 (396)
.+.+|+.++.-||+.. ..+..++|.+.|..|++.+++.
T Consensus 25 k~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 66 (78)
T 2ctp_A 25 KKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRK 66 (78)
T ss_dssp HHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHH
Confidence 4566777777889875 4678889999999998887653
No 50
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.00 E-value=33 Score=26.56 Aligned_cols=41 Identities=10% Similarity=0.227 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhCCCCC----HHHHHHHHHHHHhhcCHHhhhhHHH
Q psy13343 94 SRGQRRKMAQDNPKMH----NSEISKRLGAEWKLLNEQAKRPFID 134 (396)
Q Consensus 94 ~ke~R~kik~enP~~~----~~EISK~LGe~WK~LSeeEK~~Y~e 134 (396)
.+.+|+.++.-||+.. ..+..+.|.+.|..|.+.+++.-++
T Consensus 25 k~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd 69 (88)
T 2ctr_A 25 KKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYD 69 (88)
T ss_dssp HHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 4567777888899865 3567888999999998877654433
No 51
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.02 E-value=43 Score=25.98 Aligned_cols=37 Identities=16% Similarity=0.286 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhCCCCCH------HHHHHHHHHHHhhcCHHhhh
Q psy13343 94 SRGQRRKMAQDNPKMHN------SEISKRLGAEWKLLNEQAKR 130 (396)
Q Consensus 94 ~ke~R~kik~enP~~~~------~EISK~LGe~WK~LSeeEK~ 130 (396)
.+.+|+.+++-||+... .+..+.|.+.|..|.+.+++
T Consensus 27 k~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R 69 (92)
T 2dmx_A 27 KKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69 (92)
T ss_dssp HHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHH
Confidence 35677777888898652 46788899999999877654
No 52
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=34.36 E-value=63 Score=25.76 Aligned_cols=42 Identities=24% Similarity=0.392 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhCCCCC------HHHHHHHHHHHHhhcCHHhhhhHHHH
Q psy13343 94 SRGQRRKMAQDNPKMH------NSEISKRLGAEWKLLNEQAKRPFIDE 135 (396)
Q Consensus 94 ~ke~R~kik~enP~~~------~~EISK~LGe~WK~LSeeEK~~Y~e~ 135 (396)
.+.+|+.+++-+|+.. ..+..++|.+.|..|++.+|+.-++.
T Consensus 20 k~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~ 67 (99)
T 2lgw_A 20 KKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDR 67 (99)
T ss_dssp HHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 4567777788888855 34688899999999988877654443
No 53
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.69 E-value=41 Score=25.39 Aligned_cols=38 Identities=16% Similarity=0.293 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhCCCCCH------HHHHHHHHHHHhhcCHHhhhh
Q psy13343 94 SRGQRRKMAQDNPKMHN------SEISKRLGAEWKLLNEQAKRP 131 (396)
Q Consensus 94 ~ke~R~kik~enP~~~~------~EISK~LGe~WK~LSeeEK~~ 131 (396)
.+.+|+.+++-||+... .+..+.|.+.|..|++.+++.
T Consensus 27 k~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 70 (82)
T 2ej7_A 27 KKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRD 70 (82)
T ss_dssp HHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHH
T ss_pred HHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 45667777778898652 357888999999999887653
No 54
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.66 E-value=60 Score=25.27 Aligned_cols=37 Identities=14% Similarity=0.106 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhCCCCC----HHHHHHHHHHHHhhcCHHhhh
Q psy13343 94 SRGQRRKMAQDNPKMH----NSEISKRLGAEWKLLNEQAKR 130 (396)
Q Consensus 94 ~ke~R~kik~enP~~~----~~EISK~LGe~WK~LSeeEK~ 130 (396)
.+.+|+..++-||+.. ..+..+.|.+.|..|.+.+|+
T Consensus 45 k~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R 85 (90)
T 2ys8_A 45 NKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKS 85 (90)
T ss_dssp HHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccc
Confidence 3556777777888854 566777788888887776653
No 55
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=23.05 E-value=53 Score=25.39 Aligned_cols=37 Identities=11% Similarity=0.285 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhCCCCC-----------HHHHHHHHHHHHhhcCHHhhh
Q psy13343 94 SRGQRRKMAQDNPKMH-----------NSEISKRLGAEWKLLNEQAKR 130 (396)
Q Consensus 94 ~ke~R~kik~enP~~~-----------~~EISK~LGe~WK~LSeeEK~ 130 (396)
.+.+|+.+++-||+.. ..+..+.|.+.|..|++.+|+
T Consensus 34 k~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R 81 (94)
T 1wjz_A 34 KQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETK 81 (94)
T ss_dssp HHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHH
T ss_pred HHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHH
Confidence 3455666667788874 246778889999999887764
No 56
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=22.84 E-value=1.2e+02 Score=25.81 Aligned_cols=41 Identities=12% Similarity=0.281 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhCCCCCH-----------HHHHHHHHHHHhhcCHHhhhhHHH
Q psy13343 94 SRGQRRKMAQDNPKMHN-----------SEISKRLGAEWKLLNEQAKRPFID 134 (396)
Q Consensus 94 ~ke~R~kik~enP~~~~-----------~EISK~LGe~WK~LSeeEK~~Y~e 134 (396)
.+.+|+..++-||+... .+..+.|.+.|..|++.+|+.-++
T Consensus 28 k~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd 79 (155)
T 2l6l_A 28 KQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYD 79 (155)
T ss_dssp HHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHH
T ss_pred HHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45677777888898541 378899999999999877664443
No 57
>2e9x_A DNA replication complex GINS protein PSF1; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.1 PDB: 2eho_B*
Probab=22.58 E-value=45 Score=28.71 Aligned_cols=59 Identities=17% Similarity=0.056 Sum_probs=34.3
Q ss_pred CCCCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHHHHCC
Q psy13343 82 RVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHMKEHP 148 (396)
Q Consensus 82 kpKRPmNAFmLF~ke~R~kik~enP~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ke~P 148 (396)
+.||-+-||+..+-+.-+++.=.+...-. .+.|..||++|++.| ..+.+.-++|+..+-
T Consensus 71 RnKrcLlAYl~~Rl~kI~~~~w~~g~~L~-------~~~~~~LS~~E~~f~-~~Y~~lL~~y~~~~~ 129 (149)
T 2e9x_A 71 RNRRCTVAYLYDRLLRIRALRWEYGSVLP-------NALRFHMAAEEMEWF-NNYKRSLATYMRSLG 129 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSSCC-------HHHHHTSCHHHHHHH-HHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccCC-------hHHHhcCCHHHHHHH-HHHHHHHHHHHHhcC
Confidence 34555556665555555544432222111 223789999999754 555666688888664
No 58
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=20.59 E-value=2.2e+02 Score=23.47 Aligned_cols=39 Identities=8% Similarity=0.148 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHHhhcCHHhhhhHHHHHHHHHHHHH
Q psy13343 106 PKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVHM 144 (396)
Q Consensus 106 P~~~~~EISK~LGe~WK~LSeeEK~~Y~e~Ak~~Ke~h~ 144 (396)
..++..++-.+|-+.|..+..-|=+.|.-+++..+..|+
T Consensus 40 d~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yE 78 (106)
T 1j1d_B 40 DHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYE 78 (106)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHH
Confidence 467888999999999988877777777766666555554
Done!