RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13343
(396 letters)
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 119 bits (300), Expect = 3e-34
Identities = 75/80 (93%), Positives = 78/80 (97%)
Query: 81 DRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLR 140
DRVKRPMNAFMVWSRGQRRKMAQ+NPKMHNSEISKRLGAEWKLL+E KRPFIDEAKRLR
Sbjct: 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLR 60
Query: 141 AVHMKEHPDYKYRPRRKTKT 160
A+HMKEHPDYKYRPRRKTKT
Sbjct: 61 ALHMKEHPDYKYRPRRKTKT 80
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 115 bits (289), Expect = 2e-32
Identities = 55/83 (66%), Positives = 69/83 (83%)
Query: 81 DRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLR 140
DRVKRPMNAF+VWSR QRRKMA +NP+M NSEISK+LG +WK+L E K PF EA++L+
Sbjct: 3 DRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQ 62
Query: 141 AVHMKEHPDYKYRPRRKTKTLLK 163
A+H +++P+YKYRPRRK K L K
Sbjct: 63 AMHREKYPNYKYRPRRKAKMLPK 85
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 86
Score = 110 bits (276), Expect = 2e-30
Identities = 21/84 (25%), Positives = 47/84 (55%)
Query: 83 VKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAV 142
+K+P+NAFM++ + R + ++ ++ I++ LG W L+ + + + + A++ R +
Sbjct: 3 IKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQL 62
Query: 143 HMKEHPDYKYRPRRKTKTLLKKDK 166
HM+ +P + R K K++K
Sbjct: 63 HMQLYPGWSARDNYGKKKKRKREK 86
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 70
Score = 96.4 bits (240), Expect = 1e-25
Identities = 35/69 (50%), Positives = 49/69 (71%)
Query: 82 RVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRA 141
+KRPMNAFMVW++ +RRK+ Q P MHNS ISK LG+ WK + K+P+ +E RL
Sbjct: 2 HIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSK 61
Query: 142 VHMKEHPDY 150
H++++PDY
Sbjct: 62 QHLEKYPDY 70
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster
(Cricetulus griseus) [TaxId: 10029]}
Length = 79
Score = 93.0 bits (231), Expect = 3e-24
Identities = 18/74 (24%), Positives = 39/74 (52%)
Query: 84 KRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVH 143
KRP +AF ++ R K+ ++P + +++K+LG W K+P+ +A +L+ +
Sbjct: 4 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKY 63
Query: 144 MKEHPDYKYRPRRK 157
K+ Y+ + +
Sbjct: 64 EKDIAAYRAKGKPD 77
>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId: 7227]}
Length = 73
Score = 86.4 bits (214), Expect = 6e-22
Identities = 17/72 (23%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 81 DRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLR 140
D+ KRP++A+M+W R + ++NP + +E++KR G W+ + + K + +A + +
Sbjct: 2 DKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAAKAK 59
Query: 141 AVHMKEHPDYKY 152
+ + +++
Sbjct: 60 DDYDRAVKEFEA 71
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 84.2 bits (208), Expect = 7e-21
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 81 DRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLR 140
D K+P+ + + +R K A+ +P+M N +++K L ++K L E+ K +I + +R +
Sbjct: 9 DFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREK 68
Query: 141 AVHMKE-------HPDYKYRPRR 156
+ HPD ++
Sbjct: 69 QEFERNLARFREDHPDLIQNAKK 91
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 81.1 bits (200), Expect = 6e-20
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 82 RVKRPMNAFMVWSRGQRRKMAQDNP--KMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRL 139
+ + M+++ + + R + + +P ++ SE SK+ WK ++ + K F D AK
Sbjct: 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 60
Query: 140 RAVHMKEHPDY 150
+A + +E Y
Sbjct: 61 KARYEREMKTY 71
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 80.7 bits (199), Expect = 2e-19
Identities = 18/74 (24%), Positives = 38/74 (51%)
Query: 81 DRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLR 140
+ KR ++A+M ++ R + +NP + ++ K+LG +WK L + K+P+ +A+ +
Sbjct: 19 NAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADK 78
Query: 141 AVHMKEHPDYKYRP 154
+ E Y
Sbjct: 79 KRYESEKELYNATL 92
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 79.2 bits (195), Expect = 6e-19
Identities = 13/99 (13%), Positives = 39/99 (39%), Gaps = 4/99 (4%)
Query: 68 NNNSTNSKNQNAIDRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQ 127
+ +S K++ K P N++ ++ M + ++E +WKLL+++
Sbjct: 3 SGSSGQLKDKFDGRPTKPPPNSYSLYCAELMANM----KDVPSTERMVLCSQQWKLLSQK 58
Query: 128 AKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTLLKKDK 166
K + + + + + E + + + + ++
Sbjct: 59 EKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEE 97
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 78.8 bits (194), Expect = 9e-19
Identities = 11/83 (13%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Query: 84 KRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLRAVH 143
K PMN + +S+ ++ + E +G+ W+ +++ K + A+ + +
Sbjct: 10 KPPMNGYQKFSQELLSNGELNHLPL--KERMVEIGSRWQRISQSQKEHYKKLAEEQQRQY 67
Query: 144 MKEHPDYKYRPRRKTKTLLKKDK 166
+ + + K+
Sbjct: 68 KVHLDLWVKSLSPQDRAAYKEYI 90
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 90
Score = 74.6 bits (183), Expect = 2e-17
Identities = 17/66 (25%), Positives = 39/66 (59%)
Query: 81 DRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPFIDEAKRLR 140
++ KRP++A ++S +RR++ ++ P++ SE+++ L W L+E+ K + L+
Sbjct: 19 EKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALK 78
Query: 141 AVHMKE 146
A ++
Sbjct: 79 AQSERK 84
>d1r8na_ b.42.4.1 (A:) Serine protease inhibitor DrTI {Royal
poinciana (Delonix regia) [TaxId: 72433]}
Length = 185
Score = 27.6 bits (61), Expect = 1.9
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 297 PVSPSSGGGILTPTPGSGPPTGLHLVKREYGSPNGLP 333
+GGG + P G + +++ + GLP
Sbjct: 24 SAIIGAGGGGVRPGRTRGSMCPMSIIQEQSDLQMGLP 60
>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 144
Score = 27.2 bits (60), Expect = 2.4
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 349 PNGAPPNAGDLRHMISMYLPEQQEQARLQAMYQQQAGHPPEGMPLT 394
A ++ + P+Q A+ Q QQ A H PLT
Sbjct: 9 ATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLT 54
>d1vqoy1 c.9.2.1 (Y:95-236) Ribosomal protein L32e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 142
Score = 26.6 bits (59), Expect = 3.3
Identities = 8/74 (10%), Positives = 21/74 (28%), Gaps = 8/74 (10%)
Query: 97 QRRKMAQDNPKMHNSEISKRLGAEWKLLNEQAKRPF-IDEAKRLRAVHMKEHPDYKYRPR 155
QR ++ + + KR+ W+ +P +R + + +R
Sbjct: 25 QRHRVGKPQFNRQDHHKKKRVSTSWR-------KPRGQLSKQRRGIKGKGDTVEAGFRSP 77
Query: 156 RKTKTLLKKDKYPL 169
+ +
Sbjct: 78 TAVRGKHPSGFEEV 91
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus
[TaxId: 5053]}
Length = 422
Score = 26.6 bits (58), Expect = 5.8
Identities = 19/86 (22%), Positives = 27/86 (31%), Gaps = 16/86 (18%)
Query: 232 THMSSGYPRYDMTGMHPSSTSLNSYMNGSSYGMYTTATTLPGAGSPYHSMQPSSHSPSGS 291
S Y + S L SS+ YTT +T+ A PSG
Sbjct: 339 WTESGSSELYLCRSAYGSGYCLKD---SSSHTSYTTTSTVTAA-------------PSGY 382
Query: 292 SVKSEPVSPSSGGGILTPTPGSGPPT 317
S + ++ G+ P PT
Sbjct: 383 SATTMAADLATAFGLTASIPIPTIPT 408
>d1hska1 d.145.1.2 (A:15-208) Uridine
diphospho-N-Acetylenolpyruvylglucosamine reductase
(MurB), N-terminal domain {Staphylococcus aureus [TaxId:
1280]}
Length = 194
Score = 26.4 bits (57), Expect = 5.9
Identities = 8/63 (12%), Positives = 18/63 (28%)
Query: 204 SMYQMPNGYMPNGYMMDPATYQQHSAYTTHMSSGYPRYDMTGMHPSSTSLNSYMNGSSYG 263
S+ + + + + ++ + + P S YMN +YG
Sbjct: 83 SLLSLDHIEVSDDAIIAGSGAAIIDVSRVARDYALTGLEFACGIPGSIGGAVYMNAGAYG 142
Query: 264 MYT 266
Sbjct: 143 GEV 145
>d1ifwa_ a.144.1.1 (A:) poly(A) binding protein {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 92
Score = 24.8 bits (54), Expect = 7.0
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
Query: 349 PNGAPPNAGDLRHMISMYLPEQQEQA---RLQAMYQQQAGHP 387
P G+P NA D ++Q QA +L + +
Sbjct: 2 PLGSPRNANDNNQF----YQQKQRQALGEQLYKKVSAKTSNE 39
>d1t1ea2 d.58.3.2 (A:12-190) Pro-kumamolisin activation domain
{Bacillus sp. MN-32 [TaxId: 198803]}
Length = 179
Score = 26.0 bits (57), Expect = 7.0
Identities = 10/69 (14%), Positives = 17/69 (24%), Gaps = 13/69 (18%)
Query: 327 GSPNGLPPNSTDLHLVKREYSSPNGAPPNAGDLRHMISMYLPEQQEQARLQAMYQQQAGH 386
G P + D G + + L Q+ + +Q A
Sbjct: 8 GHARRQAPQAVDK-----------GPVTGDQRISVTV--VLRRQRGDELEAHVERQAALA 54
Query: 387 PPEGMPLTH 395
P + L
Sbjct: 55 PHARVHLER 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.124 0.369
Gapped
Lambda K H
0.267 0.0591 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,433,431
Number of extensions: 63892
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 23
Length of query: 396
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 309
Effective length of database: 1,213,086
Effective search space: 374843574
Effective search space used: 374843574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (24.9 bits)