BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13344
(155 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|195574631|ref|XP_002105288.1| GD21403 [Drosophila simulans]
gi|194201215|gb|EDX14791.1| GD21403 [Drosophila simulans]
Length = 664
Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/137 (63%), Positives = 105/137 (76%), Gaps = 8/137 (5%)
Query: 27 TKIKYDEYGNHSSWAYGEEI--------FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNG 78
T++KY++ + YG I G IWKIVK GEE+IVY DFN KKERHL+G
Sbjct: 35 TQLKYNQTVSLKGKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSG 94
Query: 79 CVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLEL 138
C LDR RP+++ITD +A YQQARRR RDE+LMTNILQT+RNNGNVL+AVDTAGRVLEL
Sbjct: 95 CELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLEL 154
Query: 139 THMLEQLWRNKDSGLVS 155
HML+QLW+NKDSGL++
Sbjct: 155 AHMLDQLWKNKDSGLMA 171
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 14/125 (11%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYG---NHSSWAYGEEIFTGPIWKIVKEGEEEIVY 64
+S FFKSNK+ MFP+HE K+K DEYG N + + TG + ++E +E V
Sbjct: 354 HSGFFKSNKRHHVMFPYHEEKVKCDEYGEIINLDDYRIADA--TGYEFVPMEEQNKENVK 411
Query: 65 GVDFNLKKERHLNGCVLDRFI----RPTVVI----TDTMSAIYQQARRRTR-DERLMTNI 115
+ + ++ NG ++D + +PT +I T ++A Q+ R D M I
Sbjct: 412 KEEPGMGADQQANGAIVDNDVQLLEKPTKLINQRKTIEVNAQVQRIDFEGRSDGESMLKI 471
Query: 116 LQTLR 120
L LR
Sbjct: 472 LSQLR 476
>gi|195054718|ref|XP_001994270.1| GH10247 [Drosophila grimshawi]
gi|193896140|gb|EDV95006.1| GH10247 [Drosophila grimshawi]
Length = 754
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/137 (62%), Positives = 106/137 (77%), Gaps = 8/137 (5%)
Query: 27 TKIKYDEYGNHSSWAYGEEI--------FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNG 78
T++KY++ + YG I G IWKIVK GEE+IVY +DFN KKERHL+G
Sbjct: 127 TQLKYNQTVSLKGKGYGISITPLSAGHMIGGTIWKIVKVGEEDIVYAIDFNHKKERHLSG 186
Query: 79 CVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLEL 138
C LDR RP+++ITD +A YQQARRR RDE+LMTNILQT+RNNGNVL+AVDTAGRVLEL
Sbjct: 187 CELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLEL 246
Query: 139 THMLEQLWRNKDSGLVS 155
HML+QLW+NK+SGL++
Sbjct: 247 AHMLDQLWKNKESGLMA 263
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYG 35
+S FFKSNK+ MFPFHE KIKYD+YG
Sbjct: 446 HSGFFKSNKRHHVMFPFHEEKIKYDDYG 473
>gi|195392300|ref|XP_002054797.1| GJ24636 [Drosophila virilis]
gi|194152883|gb|EDW68317.1| GJ24636 [Drosophila virilis]
Length = 693
Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/137 (62%), Positives = 106/137 (77%), Gaps = 8/137 (5%)
Query: 27 TKIKYDEYGNHSSWAYGEEI--------FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNG 78
T++KY++ + YG I G IWKIVK GEE+I+Y +DFN KKERHL+G
Sbjct: 127 TQLKYNQTVSLKGKGYGISITPLSAGHMIGGTIWKIVKVGEEDIIYAIDFNHKKERHLSG 186
Query: 79 CVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLEL 138
C LDR RP+++ITD +A YQQARRR RDE+LMTNILQT+RNNGNVL+AVDTAGRVLEL
Sbjct: 187 CELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLEL 246
Query: 139 THMLEQLWRNKDSGLVS 155
HML+QLW+NK+SGL++
Sbjct: 247 AHMLDQLWKNKESGLMA 263
>gi|24650920|ref|NP_733264.1| cleavage and polyadenylation specificity factor 100, isoform B
[Drosophila melanogaster]
gi|23172526|gb|AAN14148.1| cleavage and polyadenylation specificity factor 100, isoform B
[Drosophila melanogaster]
Length = 664
Score = 176 bits (445), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 86/137 (62%), Positives = 105/137 (76%), Gaps = 8/137 (5%)
Query: 27 TKIKYDEYGNHSSWAYGEEI--------FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNG 78
T++KY++ + YG I G IWKIVK GEE+IVY DFN KKERHL+G
Sbjct: 35 TQLKYNQTVSLKDKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSG 94
Query: 79 CVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLEL 138
C LDR RP+++ITD +A YQQARRR RDE+LMTNILQT+RNNGNVL+AVDTAGRVLEL
Sbjct: 95 CELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLEL 154
Query: 139 THMLEQLWRNKDSGLVS 155
HML+QLW+NK+SGL++
Sbjct: 155 AHMLDQLWKNKESGLMA 171
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 9/92 (9%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYG---NHSSWAYGEEIFTGPIWKIVKEGEEEIVY 64
+S FFKSNK+ MFP+HE K+K DEYG N + + TG + ++E +E V
Sbjct: 354 HSGFFKSNKRHHVMFPYHEEKVKCDEYGEIINLDDYRIADA--TGYEFVPMEEQNKENVK 411
Query: 65 GVDFNLKKERHLNGCVLDRFI----RPTVVIT 92
+ + E+ NG ++D + +PT +I+
Sbjct: 412 KEEPGIGAEQQANGGIVDNDVQLLEKPTKLIS 443
>gi|195109795|ref|XP_001999467.1| GI23051 [Drosophila mojavensis]
gi|193916061|gb|EDW14928.1| GI23051 [Drosophila mojavensis]
Length = 754
Score = 176 bits (445), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 85/137 (62%), Positives = 106/137 (77%), Gaps = 8/137 (5%)
Query: 27 TKIKYDEYGNHSSWAYGEEI--------FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNG 78
T++KY++ + YG I G +WKIVK GEE+I+Y VDFN KKERHL+G
Sbjct: 127 TQLKYNQTVSLKGKGYGISITPLSAGHMIGGTVWKIVKVGEEDIIYAVDFNHKKERHLSG 186
Query: 79 CVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLEL 138
C LDR RP+++ITD +A YQQARRR RDE+LMTNILQT+RNNGNVL+AVDTAGRVLEL
Sbjct: 187 CELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLEL 246
Query: 139 THMLEQLWRNKDSGLVS 155
HML+QLW+NK+SGL++
Sbjct: 247 AHMLDQLWKNKESGLMA 263
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 23/28 (82%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYG 35
+S FFKSNK+ MFP+HE KIKYD+YG
Sbjct: 446 HSGFFKSNKRHHVMFPYHEEKIKYDDYG 473
>gi|195341087|ref|XP_002037143.1| GM12754 [Drosophila sechellia]
gi|194131259|gb|EDW53302.1| GM12754 [Drosophila sechellia]
Length = 743
Score = 176 bits (445), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 86/137 (62%), Positives = 105/137 (76%), Gaps = 8/137 (5%)
Query: 27 TKIKYDEYGNHSSWAYGEEI--------FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNG 78
T++KY++ + YG I G IWKIVK GEE+IVY DFN KKERHL+G
Sbjct: 127 TQLKYNQTVSLKGKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSG 186
Query: 79 CVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLEL 138
C LDR RP+++ITD +A YQQARRR RDE+LMTNILQT+RNNGNVL+AVDTAGRVLEL
Sbjct: 187 CELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLEL 246
Query: 139 THMLEQLWRNKDSGLVS 155
HML+QLW+NK+SGL++
Sbjct: 247 AHMLDQLWKNKESGLMA 263
Score = 38.5 bits (88), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 14/119 (11%)
Query: 14 SNKKQFPMFPFHETKIKYDEYG---NHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNL 70
SNK+ MFP+HE K+K DEYG N + + TG + ++E +E V + +
Sbjct: 439 SNKRHHVMFPYHEEKVKCDEYGEIINLDDYRIADA--TGYEFVPMEEQNKENVKKEEPGI 496
Query: 71 KKERHLNGCVLDRFI----RPTVVI----TDTMSAIYQQARRRTR-DERLMTNILQTLR 120
++ NG ++D + +PT +I T ++A Q+ R D M IL LR
Sbjct: 497 GADQQANGAIVDNDVQLLEKPTKLINQRKTIEVNAQVQRIDFEGRSDGESMLKILSQLR 555
>gi|194906654|ref|XP_001981406.1| GG11633 [Drosophila erecta]
gi|190656044|gb|EDV53276.1| GG11633 [Drosophila erecta]
Length = 756
Score = 176 bits (445), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 86/137 (62%), Positives = 105/137 (76%), Gaps = 8/137 (5%)
Query: 27 TKIKYDEYGNHSSWAYGEEI--------FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNG 78
T++KY++ + YG I G IWKIVK GEE+IVY DFN KKERHL+G
Sbjct: 127 TQLKYNQTVSLKGKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSG 186
Query: 79 CVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLEL 138
C LDR RP+++ITD +A YQQARRR RDE+LMTNILQT+RNNGNVL+AVDTAGRVLEL
Sbjct: 187 CELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLEL 246
Query: 139 THMLEQLWRNKDSGLVS 155
HML+QLW+NK+SGL++
Sbjct: 247 AHMLDQLWKNKESGLMA 263
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYG 35
+S FFKSNK+ MFP+HE K+K DEYG
Sbjct: 446 HSGFFKSNKRHHVMFPYHEEKVKCDEYG 473
>gi|21358013|ref|NP_651658.1| cleavage and polyadenylation specificity factor 100, isoform A
[Drosophila melanogaster]
gi|18203548|sp|Q9V3D6.1|CPSF2_DROME RecName: Full=Probable cleavage and polyadenylation specificity
factor subunit 2; AltName: Full=Cleavage and
polyadenylation specificity factor 100 kDa subunit;
Short=CPSF 100 kDa subunit
gi|5679134|gb|AAD46873.1|AF160933_1 LD14168p [Drosophila melanogaster]
gi|7301732|gb|AAF56844.1| cleavage and polyadenylation specificity factor 100, isoform A
[Drosophila melanogaster]
Length = 756
Score = 176 bits (445), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 86/137 (62%), Positives = 105/137 (76%), Gaps = 8/137 (5%)
Query: 27 TKIKYDEYGNHSSWAYGEEI--------FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNG 78
T++KY++ + YG I G IWKIVK GEE+IVY DFN KKERHL+G
Sbjct: 127 TQLKYNQTVSLKDKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSG 186
Query: 79 CVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLEL 138
C LDR RP+++ITD +A YQQARRR RDE+LMTNILQT+RNNGNVL+AVDTAGRVLEL
Sbjct: 187 CELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLEL 246
Query: 139 THMLEQLWRNKDSGLVS 155
HML+QLW+NK+SGL++
Sbjct: 247 AHMLDQLWKNKESGLMA 263
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 9/92 (9%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYG---NHSSWAYGEEIFTGPIWKIVKEGEEEIVY 64
+S FFKSNK+ MFP+HE K+K DEYG N + + TG + ++E +E V
Sbjct: 446 HSGFFKSNKRHHVMFPYHEEKVKCDEYGEIINLDDYRIADA--TGYEFVPMEEQNKENVK 503
Query: 65 GVDFNLKKERHLNGCVLDRFI----RPTVVIT 92
+ + E+ NG ++D + +PT +I+
Sbjct: 504 KEEPGIGAEQQANGGIVDNDVQLLEKPTKLIS 535
>gi|195503417|ref|XP_002098643.1| GE26465, isoform A [Drosophila yakuba]
gi|194184744|gb|EDW98355.1| GE26465, isoform A [Drosophila yakuba]
Length = 756
Score = 176 bits (445), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 86/137 (62%), Positives = 105/137 (76%), Gaps = 8/137 (5%)
Query: 27 TKIKYDEYGNHSSWAYGEEI--------FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNG 78
T++KY++ + YG I G IWKIVK GEE+IVY DFN KKERHL+G
Sbjct: 127 TQLKYNQTVSLKGKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSG 186
Query: 79 CVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLEL 138
C LDR RP+++ITD +A YQQARRR RDE+LMTNILQT+RNNGNVL+AVDTAGRVLEL
Sbjct: 187 CELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLEL 246
Query: 139 THMLEQLWRNKDSGLVS 155
HML+QLW+NK+SGL++
Sbjct: 247 AHMLDQLWKNKESGLMA 263
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYG 35
+S FFKSNK+ MFP+HE K+K DEYG
Sbjct: 446 HSGFFKSNKRHHVMFPYHEEKVKCDEYG 473
>gi|194745794|ref|XP_001955372.1| GF16269 [Drosophila ananassae]
gi|190628409|gb|EDV43933.1| GF16269 [Drosophila ananassae]
Length = 756
Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 86/137 (62%), Positives = 105/137 (76%), Gaps = 8/137 (5%)
Query: 27 TKIKYDEYGNHSSWAYGEEI--------FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNG 78
T++KY++ + YG I G IWKIVK GEE+IVY DFN KKERHL+G
Sbjct: 127 TQLKYNQTVSLKGKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSG 186
Query: 79 CVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLEL 138
C LDR RP+++ITD +A YQQARRR RDE+LMTNILQT+RNNGNVL+AVDTAGRVLEL
Sbjct: 187 CELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLEL 246
Query: 139 THMLEQLWRNKDSGLVS 155
HML+QLW+NK+SGL++
Sbjct: 247 AHMLDQLWKNKESGLMA 263
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 23/28 (82%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYG 35
+S FFKSNK+ MFP+HE K+KYDEYG
Sbjct: 446 HSGFFKSNKRHHVMFPYHEEKVKYDEYG 473
>gi|195503420|ref|XP_002098644.1| GE26465, isoform B [Drosophila yakuba]
gi|194184745|gb|EDW98356.1| GE26465, isoform B [Drosophila yakuba]
Length = 548
Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 86/137 (62%), Positives = 105/137 (76%), Gaps = 8/137 (5%)
Query: 27 TKIKYDEYGNHSSWAYGEEI--------FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNG 78
T++KY++ + YG I G IWKIVK GEE+IVY DFN KKERHL+G
Sbjct: 127 TQLKYNQTVSLKGKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSG 186
Query: 79 CVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLEL 138
C LDR RP+++ITD +A YQQARRR RDE+LMTNILQT+RNNGNVL+AVDTAGRVLEL
Sbjct: 187 CELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLEL 246
Query: 139 THMLEQLWRNKDSGLVS 155
HML+QLW+NK+SGL++
Sbjct: 247 AHMLDQLWKNKESGLMA 263
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYG 35
+S FFKSNK+ MFP+HE K+K DEYG
Sbjct: 446 HSGFFKSNKRHHVMFPYHEEKVKCDEYG 473
>gi|195449222|ref|XP_002071979.1| GK22564 [Drosophila willistoni]
gi|194168064|gb|EDW82965.1| GK22564 [Drosophila willistoni]
Length = 757
Score = 175 bits (444), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 85/137 (62%), Positives = 106/137 (77%), Gaps = 8/137 (5%)
Query: 27 TKIKYDEYGNHSSWAYGEEI--------FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNG 78
T++KY++ + YG I G IWKIVK GEE+IVY DFN KKERHL+G
Sbjct: 127 TQLKYNQTVSLKGKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSG 186
Query: 79 CVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLEL 138
C L+R RP+++ITD +A+YQQARRR RDE+LMTNILQT+RNNGNVL+AVDTAGRVLEL
Sbjct: 187 CELERLQRPSLLITDAYNALYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLEL 246
Query: 139 THMLEQLWRNKDSGLVS 155
HML+QLW+NK+SGL++
Sbjct: 247 AHMLDQLWKNKESGLMA 263
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 22/27 (81%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYG 35
S FFKSNK+ MFP+HE KIKYDEYG
Sbjct: 447 SGFFKSNKRHHVMFPYHEEKIKYDEYG 473
>gi|427789025|gb|JAA59964.1| Putative mrna cleavage and polyadenylation factor ii complex
subunit cft2 cpsf subunit [Rhipicephalus pulchellus]
Length = 646
Score = 175 bits (444), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 81/110 (73%), Positives = 96/110 (87%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G +W+IVK+GEE+IVY VDFN KKERHLNGC L+ RP+++ITD +A Y QARRR
Sbjct: 62 MIGGTVWRIVKDGEEDIVYAVDFNHKKERHLNGCALETISRPSLLITDCYNANYVQARRR 121
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
TRDE+LMTNILQTLRN+GNVLVAVDTAGRVLEL HMLEQLWRN+DSGL++
Sbjct: 122 TRDEQLMTNILQTLRNSGNVLVAVDTAGRVLELAHMLEQLWRNQDSGLMA 171
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 11 FFKSNKKQFPMFPFHETKIKYDEYG 35
FFK KK + MFP E KIK+D+YG
Sbjct: 358 FFKQAKKSYLMFPVKEEKIKWDDYG 382
>gi|307203591|gb|EFN82620.1| Probable cleavage and polyadenylation specificity factor subunit 2
[Harpegnathos saltator]
Length = 685
Score = 175 bits (444), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 81/110 (73%), Positives = 95/110 (86%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK GEE+I+Y VDFN KKERHLNGC L+R RP+++ITD +A YQQARRR
Sbjct: 154 MIGGTIWKIVKVGEEDIIYAVDFNHKKERHLNGCELERLQRPSLLITDAFNATYQQARRR 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
TRDE+LMTNILQTLR GNVLV+VDTAGRVLEL HML+QLWRNK+SGL++
Sbjct: 214 TRDEKLMTNILQTLRGGGNVLVSVDTAGRVLELAHMLDQLWRNKESGLLA 263
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/25 (76%), Positives = 20/25 (80%)
Query: 11 FFKSNKKQFPMFPFHETKIKYDEYG 35
FFK +KKQ PMFPF E KIK DEYG
Sbjct: 392 FFKQSKKQHPMFPFVEEKIKIDEYG 416
>gi|345480428|ref|XP_001601407.2| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like [Nasonia vitripennis]
Length = 739
Score = 175 bits (443), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 81/110 (73%), Positives = 95/110 (86%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK GEE+I+Y VDFN KKERHLNGC L+R RP+++ITD+ +A YQQARRR
Sbjct: 154 MIGGTIWKIVKVGEEDIIYAVDFNHKKERHLNGCELERLQRPSLLITDSFNATYQQARRR 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
TRDE+LMTNILQTLR GNVLV VDTAGRVLEL HML+QLWRNK+SGL++
Sbjct: 214 TRDEKLMTNILQTLRGGGNVLVGVDTAGRVLELAHMLDQLWRNKESGLLA 263
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/25 (76%), Positives = 20/25 (80%)
Query: 11 FFKSNKKQFPMFPFHETKIKYDEYG 35
FFK +KKQ PMFPF E KIK DEYG
Sbjct: 445 FFKQSKKQHPMFPFVEEKIKVDEYG 469
>gi|322783252|gb|EFZ10838.1| hypothetical protein SINV_80021 [Solenopsis invicta]
Length = 737
Score = 175 bits (443), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 81/110 (73%), Positives = 95/110 (86%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK GEE+I+Y VDFN KKERHLNGC L+R RP+++ITD +A YQQARRR
Sbjct: 154 MIGGTIWKIVKVGEEDIIYAVDFNHKKERHLNGCELERLQRPSLLITDAFNATYQQARRR 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
TRDE+LMTNILQTLR GNVLV+VDTAGRVLEL HML+QLWRNK+SGL++
Sbjct: 214 TRDEKLMTNILQTLRGGGNVLVSVDTAGRVLELAHMLDQLWRNKESGLLA 263
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/25 (76%), Positives = 20/25 (80%)
Query: 11 FFKSNKKQFPMFPFHETKIKYDEYG 35
FFK +KKQ PMFPF E KIK DEYG
Sbjct: 445 FFKQSKKQHPMFPFVEEKIKIDEYG 469
>gi|307189918|gb|EFN74154.1| Probable cleavage and polyadenylation specificity factor subunit 2
[Camponotus floridanus]
Length = 737
Score = 175 bits (443), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 81/110 (73%), Positives = 95/110 (86%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK GEE+I+Y VDFN KKERHLNGC L+R RP+++ITD +A YQQARRR
Sbjct: 154 MIGGTIWKIVKVGEEDIIYAVDFNHKKERHLNGCELERLQRPSLLITDAFNATYQQARRR 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
TRDE+LMTNILQTLR GNVLV+VDTAGRVLEL HML+QLWRNK+SGL++
Sbjct: 214 TRDEKLMTNILQTLRGGGNVLVSVDTAGRVLELAHMLDQLWRNKESGLLA 263
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/25 (76%), Positives = 21/25 (84%)
Query: 11 FFKSNKKQFPMFPFHETKIKYDEYG 35
FFK +KKQ+PMFPF E KIK DEYG
Sbjct: 445 FFKQSKKQYPMFPFVEEKIKIDEYG 469
>gi|383852782|ref|XP_003701904.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like [Megachile rotundata]
Length = 737
Score = 175 bits (443), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 81/110 (73%), Positives = 95/110 (86%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK GEE+I+Y VDFN KKERHLNGC L+R RP+++ITD +A YQQARRR
Sbjct: 154 MIGGTIWKIVKVGEEDIIYAVDFNHKKERHLNGCELERLQRPSLLITDAFNATYQQARRR 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
TRDE+LMTNILQTLR GNVLV+VDTAGRVLEL HML+QLWRNK+SGL++
Sbjct: 214 TRDEKLMTNILQTLRGGGNVLVSVDTAGRVLELAHMLDQLWRNKESGLLA 263
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/25 (76%), Positives = 20/25 (80%)
Query: 11 FFKSNKKQFPMFPFHETKIKYDEYG 35
FFK +KKQ PMFPF E KIK DEYG
Sbjct: 445 FFKQSKKQHPMFPFVEEKIKIDEYG 469
>gi|328780437|ref|XP_394940.3| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2 [Apis mellifera]
Length = 730
Score = 175 bits (443), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 85/136 (62%), Positives = 104/136 (76%), Gaps = 8/136 (5%)
Query: 28 KIKYDEYGNHSSWAYG--------EEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGC 79
++KY++ + YG + G IWKIVK GEE+I+Y VDFN KKERHLNGC
Sbjct: 128 QLKYNQSISMKGKGYGVTLTPLPAGHMIGGTIWKIVKVGEEDIIYAVDFNHKKERHLNGC 187
Query: 80 VLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELT 139
L+R RP+++ITD +A YQQARRRTRDE+LMTNILQTLR GNVLV+VDTAGRVLEL
Sbjct: 188 ELERLQRPSLLITDAFNATYQQARRRTRDEKLMTNILQTLRGGGNVLVSVDTAGRVLELA 247
Query: 140 HMLEQLWRNKDSGLVS 155
HML+QLWRNK+SGL++
Sbjct: 248 HMLDQLWRNKESGLLA 263
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/25 (76%), Positives = 20/25 (80%)
Query: 11 FFKSNKKQFPMFPFHETKIKYDEYG 35
FFK +KKQ PMFPF E KIK DEYG
Sbjct: 445 FFKQSKKQHPMFPFVEEKIKIDEYG 469
>gi|340713940|ref|XP_003395491.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like isoform 1 [Bombus terrestris]
gi|340713942|ref|XP_003395492.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like isoform 2 [Bombus terrestris]
Length = 737
Score = 175 bits (443), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 81/110 (73%), Positives = 95/110 (86%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK GEE+I+Y VDFN KKERHLNGC L+R RP+++ITD +A YQQARRR
Sbjct: 154 MIGGTIWKIVKVGEEDIIYAVDFNHKKERHLNGCELERLQRPSLLITDAFNATYQQARRR 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
TRDE+LMTNILQTLR GNVLV+VDTAGRVLEL HML+QLWRNK+SGL++
Sbjct: 214 TRDEKLMTNILQTLRGGGNVLVSVDTAGRVLELAHMLDQLWRNKESGLLA 263
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/25 (76%), Positives = 20/25 (80%)
Query: 11 FFKSNKKQFPMFPFHETKIKYDEYG 35
FFK +KKQ PMFPF E KIK DEYG
Sbjct: 445 FFKQSKKQHPMFPFLEEKIKIDEYG 469
>gi|332028657|gb|EGI68691.1| Putative cleavage and polyadenylation specificity factor subunit 2
[Acromyrmex echinatior]
Length = 737
Score = 175 bits (443), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 81/110 (73%), Positives = 95/110 (86%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK GEE+I+Y VDFN KKERHLNGC L+R RP+++ITD +A YQQARRR
Sbjct: 154 MIGGTIWKIVKVGEEDIIYAVDFNHKKERHLNGCELERLQRPSLLITDAFNATYQQARRR 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
TRDE+LMTNILQTLR GNVLV+VDTAGRVLEL HML+QLWRNK+SGL++
Sbjct: 214 TRDEKLMTNILQTLRGGGNVLVSVDTAGRVLELAHMLDQLWRNKESGLLA 263
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/25 (76%), Positives = 20/25 (80%)
Query: 11 FFKSNKKQFPMFPFHETKIKYDEYG 35
FFK +KKQ PMFPF E KIK DEYG
Sbjct: 445 FFKQSKKQHPMFPFVEEKIKIDEYG 469
>gi|346465041|gb|AEO32365.1| hypothetical protein [Amblyomma maculatum]
Length = 644
Score = 174 bits (442), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 81/110 (73%), Positives = 95/110 (86%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G +W+IVK+GEE+IVY VDFN KKERHLNGC L+ RP+++ITD +A Y QARRR
Sbjct: 62 MIGGTVWRIVKDGEEDIVYAVDFNHKKERHLNGCALETISRPSLLITDCYNANYVQARRR 121
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
TRDE+LMTNILQTLRN GNVLVAVDTAGRVLEL HMLEQLWRN+DSGL++
Sbjct: 122 TRDEQLMTNILQTLRNGGNVLVAVDTAGRVLELAHMLEQLWRNQDSGLMA 171
>gi|380025109|ref|XP_003696322.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like [Apis florea]
Length = 737
Score = 174 bits (442), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 85/137 (62%), Positives = 104/137 (75%), Gaps = 8/137 (5%)
Query: 27 TKIKYDEYGNHSSWAYG--------EEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNG 78
++KY++ + YG + G IWKIVK GEE+I+Y VDFN KKERHLNG
Sbjct: 127 VQLKYNQSISMKGKGYGVTLTPLPAGHMIGGTIWKIVKVGEEDIIYAVDFNHKKERHLNG 186
Query: 79 CVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLEL 138
C L+R RP+++ITD +A YQQARRRTRDE+LMTNILQTLR GNVLV+VDTAGRVLEL
Sbjct: 187 CELERLQRPSLLITDAFNATYQQARRRTRDEKLMTNILQTLRGGGNVLVSVDTAGRVLEL 246
Query: 139 THMLEQLWRNKDSGLVS 155
HML+QLWRNK+SGL++
Sbjct: 247 AHMLDQLWRNKESGLLA 263
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/25 (76%), Positives = 20/25 (80%)
Query: 11 FFKSNKKQFPMFPFHETKIKYDEYG 35
FFK +KKQ PMFPF E KIK DEYG
Sbjct: 445 FFKQSKKQHPMFPFVEEKIKIDEYG 469
>gi|350400562|ref|XP_003485880.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like [Bombus impatiens]
Length = 737
Score = 174 bits (442), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 81/110 (73%), Positives = 95/110 (86%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK GEE+I+Y VDFN KKERHLNGC L+R RP+++ITD +A YQQARRR
Sbjct: 154 MIGGTIWKIVKVGEEDIIYAVDFNHKKERHLNGCELERLQRPSLLITDAFNATYQQARRR 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
TRDE+LMTNILQTLR GNVLV+VDTAGRVLEL HML+QLWRNK+SGL++
Sbjct: 214 TRDEKLMTNILQTLRGGGNVLVSVDTAGRVLELAHMLDQLWRNKESGLLA 263
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/25 (76%), Positives = 20/25 (80%)
Query: 11 FFKSNKKQFPMFPFHETKIKYDEYG 35
FFK +KKQ PMFPF E KIK DEYG
Sbjct: 445 FFKQSKKQHPMFPFLEEKIKIDEYG 469
>gi|198452192|ref|XP_002137430.1| GA26549 [Drosophila pseudoobscura pseudoobscura]
gi|198131825|gb|EDY67988.1| GA26549 [Drosophila pseudoobscura pseudoobscura]
Length = 757
Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 84/137 (61%), Positives = 104/137 (75%), Gaps = 8/137 (5%)
Query: 27 TKIKYDEYGNHSSWAYGEEI--------FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNG 78
T++KY++ + YG I G IWKIVK GEE+IVY DFN KKERHL+G
Sbjct: 127 TQLKYNQTVSLKGKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSG 186
Query: 79 CVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLEL 138
C LDR RP+++ITD +A YQQARRR RDE+LMTNILQT+RNNGNVL+A DTAGR+LEL
Sbjct: 187 CELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAADTAGRMLEL 246
Query: 139 THMLEQLWRNKDSGLVS 155
HML+QLW+NK+SGL++
Sbjct: 247 AHMLDQLWKNKESGLMA 263
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYG 35
+S FFKSNK+ MFP+HE KIKYDEYG
Sbjct: 446 HSGFFKSNKRHHVMFPYHEEKIKYDEYG 473
>gi|270010824|gb|EFA07272.1| hypothetical protein TcasGA2_TC014506 [Tribolium castaneum]
Length = 733
Score = 172 bits (435), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 80/106 (75%), Positives = 92/106 (86%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G IWKI+K GEE+I+Y DFN KKERHLNGC L++ RP++ ITD +A YQQARRR RD
Sbjct: 157 GTIWKIMKVGEEDIIYANDFNHKKERHLNGCELEKLQRPSLFITDAFNATYQQARRRARD 216
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLV 154
E+LMTNILQTLRNNGNVLVAVDTAGRVLEL HML+QLWRNK+SGL+
Sbjct: 217 EKLMTNILQTLRNNGNVLVAVDTAGRVLELAHMLDQLWRNKESGLL 262
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 21/25 (84%)
Query: 11 FFKSNKKQFPMFPFHETKIKYDEYG 35
FFK KKQ+P++PFHE KIK DEYG
Sbjct: 443 FFKVTKKQYPIYPFHEEKIKCDEYG 467
>gi|242021798|ref|XP_002431330.1| Cleavage and polyadenylation specificity factor 100 kDa subunit,
putative [Pediculus humanus corporis]
gi|212516598|gb|EEB18592.1| Cleavage and polyadenylation specificity factor 100 kDa subunit,
putative [Pediculus humanus corporis]
Length = 731
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/107 (72%), Positives = 92/107 (85%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G IWKI K GEE+I+Y VD+N KKERHLNGC L++ RP+++ITD +A YQQ RRR RD
Sbjct: 157 GSIWKIFKVGEEDIIYAVDYNHKKERHLNGCELEKIQRPSLLITDAFNATYQQQRRRVRD 216
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
E+LMTNILQTLR+NGNVLV VDTAGRVLEL HMLEQLWRNK+SGL++
Sbjct: 217 EKLMTNILQTLRSNGNVLVTVDTAGRVLELAHMLEQLWRNKESGLLA 263
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 11/54 (20%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEE 61
+S FFK+NKKQ MFPF+E K+K+D+YG EI +K+ EGE+E
Sbjct: 440 HSGFFKTNKKQNAMFPFYEHKVKFDDYG---------EIINPDFYKL--EGEKE 482
>gi|157112944|ref|XP_001657690.1| cleavage and polyadenylation specificity factor [Aedes aegypti]
gi|108884656|gb|EAT48881.1| AAEL000118-PA [Aedes aegypti]
Length = 744
Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 77/110 (70%), Positives = 93/110 (84%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWK++K GEE+IVY DFN KKERHLNGC L++ RP+++ITD +A YQQARRR
Sbjct: 154 LIGGTIWKVMKVGEEDIVYATDFNHKKERHLNGCELEKLQRPSLLITDAYNAKYQQARRR 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
RDE+ MTNILQTLRNNGNVLV VDTAGRVLEL HML+QLW+NK+SGL++
Sbjct: 214 ARDEKFMTNILQTLRNNGNVLVTVDTAGRVLELAHMLDQLWKNKESGLMA 263
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 7 ANSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGV 66
+++ FFKS+KKQ+ MFPFHE KIK+DEYG + I GP E +I
Sbjct: 444 SHTGFFKSSKKQYAMFPFHEEKIKFDEYGEIIQPDDYKMIDLGPDGGFEDNKENQI---K 500
Query: 67 DFNLKKERHLNGCVLDRFIRPTVVIT 92
++KKE+ VLD +PT I+
Sbjct: 501 PEDIKKEKDEELSVLD---KPTKCIS 523
>gi|321462132|gb|EFX73157.1| hypothetical protein DAPPUDRAFT_58164 [Daphnia pulex]
Length = 735
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/108 (69%), Positives = 92/108 (85%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G +WKIVK+GEE+I+Y VD+N KKERHLNGC L++ RP+++ITD + +Y Q RRR
Sbjct: 154 MLGGTVWKIVKDGEEDIIYAVDYNHKKERHLNGCELEKIQRPSLLITDAYNTLYAQPRRR 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
+RDE+LMTNILQTLR GNVLVAVDTAGRVLEL HMLEQLWRN++SGL
Sbjct: 214 SRDEKLMTNILQTLRGGGNVLVAVDTAGRVLELAHMLEQLWRNQESGL 261
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 7 ANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
A FFKS+KK MFP+ E KIK+DEYG
Sbjct: 443 AVQHFFKSSKKHPTMFPYFEDKIKFDEYG 471
>gi|443725188|gb|ELU12868.1| hypothetical protein CAPTEDRAFT_155355 [Capitella teleta]
Length = 728
Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 80/157 (50%), Positives = 109/157 (69%), Gaps = 16/157 (10%)
Query: 15 NKKQFPMFPFHET--------KIKYDEYGNHSSWAYGEEI--------FTGPIWKIVKEG 58
N ++F +F + ++KY + N +G +I G IWKIVK+G
Sbjct: 107 NSEEFNLFSLDDVDAAFDRIQQLKYSQTINLKGKGHGLQITPLPAGHMIGGTIWKIVKDG 166
Query: 59 EEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQT 118
EEEI+Y VD+N K+ERHLNGCVL+ RP ++ITD +A + QARRR RDE+LMT ILQT
Sbjct: 167 EEEIIYAVDYNHKRERHLNGCVLETINRPHLLITDAYNADFNQARRRLRDEQLMTTILQT 226
Query: 119 LRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
LRN+GN LVA+DTAGR+LEL H+L+Q+WRN++SGL++
Sbjct: 227 LRNDGNCLVALDTAGRILELAHLLDQMWRNQESGLMA 263
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 11 FFKSNKKQFPMFPFHETKIKYDEYG 35
FFK KK MFPF E K+K+DEYG
Sbjct: 450 FFKQVKKSQAMFPFEEEKLKWDEYG 474
>gi|391325231|ref|XP_003737142.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like isoform 1 [Metaseiulus occidentalis]
Length = 741
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 67/110 (60%), Positives = 90/110 (81%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G +W+I K+GEE+I+Y VD+N K+ERHLNGC L+ RP+++ITD +A Y Q RRR
Sbjct: 152 MIGGTVWRITKDGEEDIIYAVDYNHKRERHLNGCALESIQRPSLLITDAFNANYIQPRRR 211
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
+RDE+L+T I+QT+R GNVL+ VDTAGRVLEL HMLEQLWRN++SGL++
Sbjct: 212 SRDEKLLTTIIQTMRAGGNVLIGVDTAGRVLELAHMLEQLWRNQESGLMA 261
>gi|391325235|ref|XP_003737144.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like isoform 3 [Metaseiulus occidentalis]
Length = 754
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 67/110 (60%), Positives = 90/110 (81%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G +W+I K+GEE+I+Y VD+N K+ERHLNGC L+ RP+++ITD +A Y Q RRR
Sbjct: 152 MIGGTVWRITKDGEEDIIYAVDYNHKRERHLNGCALESIQRPSLLITDAFNANYIQPRRR 211
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
+RDE+L+T I+QT+R GNVL+ VDTAGRVLEL HMLEQLWRN++SGL++
Sbjct: 212 SRDEKLLTTIIQTMRAGGNVLIGVDTAGRVLELAHMLEQLWRNQESGLMA 261
>gi|391325233|ref|XP_003737143.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like isoform 2 [Metaseiulus occidentalis]
Length = 745
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 67/110 (60%), Positives = 90/110 (81%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G +W+I K+GEE+I+Y VD+N K+ERHLNGC L+ RP+++ITD +A Y Q RRR
Sbjct: 152 MIGGTVWRITKDGEEDIIYAVDYNHKRERHLNGCALESIQRPSLLITDAFNANYIQPRRR 211
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
+RDE+L+T I+QT+R GNVL+ VDTAGRVLEL HMLEQLWRN++SGL++
Sbjct: 212 SRDEKLLTTIIQTMRAGGNVLIGVDTAGRVLELAHMLEQLWRNQESGLMA 261
>gi|50539828|ref|NP_001002384.1| cleavage and polyadenylation specificity factor subunit 2 [Danio
rerio]
gi|49903850|gb|AAH76029.1| Cleavage and polyadenylation specific factor 2 [Danio rerio]
Length = 790
Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 105/157 (66%), Gaps = 16/157 (10%)
Query: 13 KSNKKQFPMFPFHET--------KIKYDEYGNHSSWAYGEEI--------FTGPIWKIVK 56
+ N + F +F + ++KY + N +G I G IWKIVK
Sbjct: 105 RHNTEDFTLFTLDDVDSAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVK 164
Query: 57 EGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNIL 116
+GEEEI+YGVDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+ RDE+L+TN++
Sbjct: 165 DGEEEIIYGVDFNHKREIHLNGCSLESLSRPSLLITDSFNASYVQPRRKQRDEQLLTNVM 224
Query: 117 QTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 225 ETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 11 FFKSNKKQFPMFPFHETKIKYDEYG 35
FFK KK + MFP HE +IK+DEYG
Sbjct: 454 FFKQAKKSYSMFPTHEERIKWDEYG 478
>gi|444714932|gb|ELW55806.1| Cleavage and polyadenylation specificity factor subunit 2 [Tupaia
chinensis]
Length = 723
Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 346 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 380
>gi|348517622|ref|XP_003446332.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Oreochromis niloticus]
Length = 787
Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 105/157 (66%), Gaps = 16/157 (10%)
Query: 13 KSNKKQFPMFPFHET--------KIKYDEYGNHSSWAYGEEI--------FTGPIWKIVK 56
++N + F +F + ++KY + N +G I G IWKIVK
Sbjct: 105 RNNSEDFTLFTLDDVDAAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVK 164
Query: 57 EGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNIL 116
+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+ RDE+L+TN++
Sbjct: 165 DGEEEIVYAVDFNHKREIHLNGCSLESLSRPSLLITDSFNAAYVQPRRKQRDEQLLTNVM 224
Query: 117 QTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 225 ETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 22/35 (62%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP HE +IK+DEYG
Sbjct: 444 MKGEGSRKGSFFKQAKKSYPMFPTHEERIKWDEYG 478
>gi|390333491|ref|XP_780045.3| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 isoform 1 [Strongylocentrotus purpuratus]
Length = 773
Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 72/111 (64%), Positives = 90/111 (81%)
Query: 43 GEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQA 102
G + G IWKIVK+GEEEI+Y VD+N KKERHLNG VL+ RP+++ITD +A Y QA
Sbjct: 151 GGHMIGGTIWKIVKDGEEEIIYAVDYNHKKERHLNGAVLETISRPSLLITDCFNATYVQA 210
Query: 103 RRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RRR RDE+LM IL T+RN GNVL++VDTAGRV+EL+ +L+QLWRN+DSGL
Sbjct: 211 RRRARDEKLMDIILNTMRNEGNVLISVDTAGRVVELSLLLDQLWRNQDSGL 261
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 23/27 (85%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYG 35
+ FFK+ KK +PMFPFHE ++++D+YG
Sbjct: 453 TSFFKTVKKSYPMFPFHEERLRWDDYG 479
>gi|387015290|gb|AFJ49764.1| Cleavage and polyadenylation specificity factor subunit 2-like
[Crotalus adamanteus]
Length = 783
Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 70/108 (64%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TNIL+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNILETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G + FFK KK +PMFP E +IK+DEYG
Sbjct: 443 MKGEGNRKGSFFKQAKKSYPMFPAPEERIKWDEYG 477
>gi|119601889|gb|EAW81483.1| cleavage and polyadenylation specific factor 2, 100kDa, isoform
CRA_c [Homo sapiens]
Length = 690
Score = 155 bits (391), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 346 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 380
>gi|432944969|ref|XP_004083472.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Oryzias latipes]
Length = 787
Score = 155 bits (391), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 105/157 (66%), Gaps = 16/157 (10%)
Query: 13 KSNKKQFPMFPFHET--------KIKYDEYGNHSSWAYGEEI--------FTGPIWKIVK 56
++N + F +F + ++KY + N +G I G IWKIVK
Sbjct: 105 RNNSEDFTLFTLDDVDSAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVK 164
Query: 57 EGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNIL 116
+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+ RDE+L+TN++
Sbjct: 165 DGEEEIVYAVDFNHKREIHLNGCTLESINRPSLLITDSFNATYVQPRRKQRDEQLLTNVM 224
Query: 117 QTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 225 ETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 11 FFKSNKKQFPMFPFHETKIKYDEYG 35
FFK KK +PMFP HE +IK+DEYG
Sbjct: 454 FFKQAKKSYPMFPTHEERIKWDEYG 478
>gi|149531954|ref|XP_001507374.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Ornithorhynchus anatinus]
Length = 782
Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 443 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 477
>gi|410962841|ref|XP_003987977.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Felis catus]
Length = 690
Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 62 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 121
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 122 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 169
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 351 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 385
>gi|426377790|ref|XP_004055637.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Gorilla gorilla gorilla]
gi|193785772|dbj|BAG51207.1| unnamed protein product [Homo sapiens]
Length = 690
Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 62 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 121
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 122 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 169
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 351 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 385
>gi|13938095|gb|AAH07163.1| Cpsf2 protein, partial [Mus musculus]
Length = 732
Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 104 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 163
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 164 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 211
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 393 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 427
>gi|28461235|ref|NP_787002.1| cleavage and polyadenylation specificity factor subunit 2 [Bos
taurus]
gi|426248504|ref|XP_004018003.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Ovis aries]
gi|1706103|sp|Q10568.1|CPSF2_BOVIN RecName: Full=Cleavage and polyadenylation specificity factor
subunit 2; AltName: Full=Cleavage and polyadenylation
specificity factor 100 kDa subunit; Short=CPSF 100 kDa
subunit
gi|599683|emb|CAA53535.1| Cleavage and Polyadenylation specificity factor (CPSF) 100kD
subunit [Bos taurus]
gi|296475169|tpg|DAA17284.1| TPA: cleavage and polyadenylation specificity factor subunit 2 [Bos
taurus]
gi|440892550|gb|ELR45701.1| Cleavage and polyadenylation specificity factor subunit 2 [Bos
grunniens mutus]
Length = 782
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 443 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 477
>gi|8393762|ref|NP_058552.1| cleavage and polyadenylation specificity factor subunit 2 [Mus
musculus]
gi|18202027|sp|O35218.1|CPSF2_MOUSE RecName: Full=Cleavage and polyadenylation specificity factor
subunit 2; AltName: Full=Cleavage and polyadenylation
specificity factor 100 kDa subunit; Short=CPSF 100 kDa
subunit
gi|2331036|gb|AAB66830.1| cleavage and polyadenylation specificity factor [Mus musculus]
gi|15489017|gb|AAH13628.1| Cleavage and polyadenylation specific factor 2 [Mus musculus]
gi|148686924|gb|EDL18871.1| cleavage and polyadenylation specific factor 2 [Mus musculus]
Length = 782
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 443 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 477
>gi|348553776|ref|XP_003462702.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Cavia porcellus]
Length = 782
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 443 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 477
>gi|344274144|ref|XP_003408878.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Loxodonta africana]
Length = 782
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 443 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 477
>gi|326920924|ref|XP_003206716.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Meleagris gallopavo]
Length = 782
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 443 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 477
>gi|71894931|ref|NP_001026379.1| cleavage and polyadenylation specificity factor subunit 2 [Gallus
gallus]
gi|60098929|emb|CAH65295.1| hypothetical protein RCJMB04_15m16 [Gallus gallus]
Length = 782
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 443 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 477
>gi|410916717|ref|XP_003971833.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Takifugu rubripes]
Length = 787
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 104/157 (66%), Gaps = 16/157 (10%)
Query: 13 KSNKKQFPMFPFHET--------KIKYDEYGNHSSWAYGEEI--------FTGPIWKIVK 56
++N + F +F + ++KY + N +G I G IWKIVK
Sbjct: 105 RNNSEDFTLFTLDDVDSAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVK 164
Query: 57 EGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNIL 116
+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+ RDE L+TN++
Sbjct: 165 DGEEEIVYAVDFNHKREIHLNGCTLESISRPSLLITDSFNATYVQPRRKQRDEMLLTNVM 224
Query: 117 QTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 225 ETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 11 FFKSNKKQFPMFPFHETKIKYDEYG 35
FFK KK +PMFP HE +IK+DEYG
Sbjct: 454 FFKQAKKSYPMFPTHEERIKWDEYG 478
>gi|354494117|ref|XP_003509185.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Cricetulus griseus]
Length = 782
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 443 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 477
>gi|157822735|ref|NP_001100223.1| cleavage and polyadenylation specificity factor subunit 2 [Rattus
norvegicus]
gi|149025374|gb|EDL81741.1| cleavage and polyadenylation specific factor 2 (predicted) [Rattus
norvegicus]
Length = 782
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 443 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 477
>gi|327259138|ref|XP_003214395.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Anolis carolinensis]
Length = 783
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 42.0 bits (97), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G + FFK KK +PMFP E +IK+DEYG
Sbjct: 443 MKGEGNRKGSFFKQAKKAYPMFPAPEERIKWDEYG 477
>gi|224051637|ref|XP_002200593.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Taeniopygia guttata]
Length = 782
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 443 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 477
>gi|47125306|gb|AAH70095.1| Cleavage and polyadenylation specific factor 2, 100kDa [Homo
sapiens]
Length = 782
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 443 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 477
>gi|126282067|ref|XP_001365312.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 isoform 1 [Monodelphis domestica]
Length = 782
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 443 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 477
>gi|417404575|gb|JAA49034.1| Putative mrna cleavage and polyadenylation factor ii complex
subunit cft2 cpsf subunit [Desmodus rotundus]
Length = 782
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 443 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 477
>gi|395503674|ref|XP_003756188.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Sarcophilus harrisii]
Length = 782
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 443 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 477
>gi|449280731|gb|EMC87967.1| Cleavage and polyadenylation specificity factor subunit 2 [Columba
livia]
Length = 782
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 443 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 477
>gi|291406601|ref|XP_002719640.1| PREDICTED: cleavage and polyadenylation specific factor 2
[Oryctolagus cuniculus]
Length = 782
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 443 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 477
>gi|73962293|ref|XP_537353.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 isoform 1 [Canis lupus familiaris]
Length = 782
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 443 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 477
>gi|351699560|gb|EHB02479.1| Cleavage and polyadenylation specificity factor subunit 2
[Heterocephalus glaber]
Length = 782
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 443 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 477
>gi|296215760|ref|XP_002754257.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Callithrix jacchus]
gi|403298149|ref|XP_003939897.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 isoform 1 [Saimiri boliviensis boliviensis]
Length = 782
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 443 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 477
>gi|383872268|ref|NP_001244509.1| cleavage and polyadenylation specificity factor subunit 2 [Macaca
mulatta]
gi|402876992|ref|XP_003902228.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Papio anubis]
gi|355693514|gb|EHH28117.1| hypothetical protein EGK_18472 [Macaca mulatta]
gi|355778801|gb|EHH63837.1| hypothetical protein EGM_16889 [Macaca fascicularis]
gi|380783537|gb|AFE63644.1| cleavage and polyadenylation specificity factor subunit 2 [Macaca
mulatta]
gi|383412079|gb|AFH29253.1| cleavage and polyadenylation specificity factor subunit 2 [Macaca
mulatta]
gi|384942144|gb|AFI34677.1| cleavage and polyadenylation specificity factor subunit 2 [Macaca
mulatta]
Length = 782
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 443 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 477
>gi|395827898|ref|XP_003787126.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Otolemur garnettii]
Length = 750
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/105 (65%), Positives = 88/105 (83%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+ RD
Sbjct: 157 GTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRD 216
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
E+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 217 EQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 11 FFKSNKKQFPMFPFHETKIKYDEYG 35
FFK KK +PMFP E +IK+DEYG
Sbjct: 421 FFKQAKKSYPMFPAPEERIKWDEYG 445
>gi|332223568|ref|XP_003260944.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 isoform 1 [Nomascus leucogenys]
Length = 782
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
>gi|431839217|gb|ELK01144.1| Cleavage and polyadenylation specificity factor subunit 2 [Pteropus
alecto]
Length = 782
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 443 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 477
>gi|149737455|ref|XP_001497134.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like isoform 1 [Equus caballus]
Length = 782
Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 443 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 477
>gi|34101288|ref|NP_059133.1| cleavage and polyadenylation specificity factor subunit 2 [Homo
sapiens]
gi|114654441|ref|XP_001147277.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 isoform 3 [Pan troglodytes]
gi|397525769|ref|XP_003832826.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Pan paniscus]
gi|51338827|sp|Q9P2I0.2|CPSF2_HUMAN RecName: Full=Cleavage and polyadenylation specificity factor
subunit 2; AltName: Full=Cleavage and polyadenylation
specificity factor 100 kDa subunit; Short=CPSF 100 kDa
subunit
gi|119601886|gb|EAW81480.1| cleavage and polyadenylation specific factor 2, 100kDa, isoform
CRA_a [Homo sapiens]
gi|119601888|gb|EAW81482.1| cleavage and polyadenylation specific factor 2, 100kDa, isoform
CRA_a [Homo sapiens]
gi|193786082|dbj|BAG50953.1| unnamed protein product [Homo sapiens]
gi|410221574|gb|JAA08006.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410221576|gb|JAA08007.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410221578|gb|JAA08008.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410252002|gb|JAA13968.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410307320|gb|JAA32260.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410307322|gb|JAA32261.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410339303|gb|JAA38598.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410339305|gb|JAA38599.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410339307|gb|JAA38600.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410339309|gb|JAA38601.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410339311|gb|JAA38602.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
Length = 782
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 443 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 477
>gi|223648270|gb|ACN10893.1| Cleavage and polyadenylation specificity factor subunit 2 [Salmo
salar]
Length = 796
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 105/157 (66%), Gaps = 16/157 (10%)
Query: 13 KSNKKQFPMFPFHET--------KIKYDEYGNHSSWAYGEEI--------FTGPIWKIVK 56
++N + F +F + ++KY + N +G I G IWKIVK
Sbjct: 105 RNNTEDFNLFTLDDVDCAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVK 164
Query: 57 EGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNIL 116
+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+ RDE+L+TN++
Sbjct: 165 DGEEEIVYAVDFNHKREIHLNGCTLESVSRPSLLITDSFNATYVQPRRKQRDEQLLTNVM 224
Query: 117 QTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 225 ETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 11 FFKSNKKQFPMFPFHETKIKYDEYG 35
FFK KK +PMFP HE ++K+DEYG
Sbjct: 454 FFKQAKKSYPMFPTHEERVKWDEYG 478
>gi|355680846|gb|AER96660.1| cleavage and polyadenylation specific factor 2, 100kDa [Mustela
putorius furo]
Length = 569
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/105 (65%), Positives = 88/105 (83%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+ RD
Sbjct: 157 GTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRD 216
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
E+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 217 EQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 443 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 477
>gi|213514628|ref|NP_001134023.1| cleavage and polyadenylation specificity factor subunit 2 [Salmo
salar]
gi|209156194|gb|ACI34329.1| Cleavage and polyadenylation specificity factor subunit 2 [Salmo
salar]
Length = 796
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 105/157 (66%), Gaps = 16/157 (10%)
Query: 13 KSNKKQFPMFPFHET--------KIKYDEYGNHSSWAYGEEI--------FTGPIWKIVK 56
++N + F +F + ++KY + N +G I G IWKIVK
Sbjct: 105 RNNTEDFNLFTLDDVDCAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVK 164
Query: 57 EGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNIL 116
+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+ RDE+L+TN++
Sbjct: 165 DGEEEIVYAVDFNHKREIHLNGCTLESVSRPSLLITDSFNATYVQPRRKQRDEQLLTNVM 224
Query: 117 QTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 225 ETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 11 FFKSNKKQFPMFPFHETKIKYDEYG 35
FFK KK +PMFP HE ++K+DEYG
Sbjct: 454 FFKQAKKSYPMFPTHEERVKWDEYG 478
>gi|74183852|dbj|BAE24504.1| unnamed protein product [Mus musculus]
Length = 493
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/105 (65%), Positives = 88/105 (83%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+ RD
Sbjct: 157 GTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRD 216
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
E+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 217 EQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 443 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 477
>gi|187608214|ref|NP_001120452.1| cleavage and polyadenylation specific factor 2, 100kDa [Xenopus
(Silurana) tropicalis]
gi|170285004|gb|AAI61233.1| LOC100145546 protein [Xenopus (Silurana) tropicalis]
Length = 783
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/105 (65%), Positives = 87/105 (82%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD +A Y Q RR+ RD
Sbjct: 157 GTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMISRPSLLITDCFNATYVQPRRKQRD 216
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
E+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 217 EQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 11 FFKSNKKQFPMFPFHETKIKYDEYG 35
FFK KK +PMFP E +IK+DEYG
Sbjct: 453 FFKQAKKSYPMFPAPEERIKWDEYG 477
>gi|26344199|dbj|BAC35756.1| unnamed protein product [Mus musculus]
Length = 296
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/105 (65%), Positives = 88/105 (83%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+ RD
Sbjct: 157 GTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRD 216
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
E+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 217 EQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
>gi|147901518|ref|NP_001081123.1| cleavage and polyadenylation specificity factor subunit 2 [Xenopus
laevis]
gi|18203567|sp|Q9W799.1|CPSF2_XENLA RecName: Full=Cleavage and polyadenylation specificity factor
subunit 2; AltName: Full=Cleavage and polyadenylation
specificity factor 100 kDa subunit; Short=CPSF 100 kDa
subunit
gi|4927240|gb|AAD33061.1|AF139986_1 cleavage and polyadenylation specificity factor 100 kDa subunit
[Xenopus laevis]
Length = 783
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/105 (65%), Positives = 88/105 (83%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+ RD
Sbjct: 157 GTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMINRPSLLITDSFNATYVQPRRKQRD 216
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
E+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 217 EQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 11 FFKSNKKQFPMFPFHETKIKYDEYG 35
FFK KK +PMFP E +IK+DEYG
Sbjct: 453 FFKQAKKSYPMFPAPEDRIKWDEYG 477
>gi|74188762|dbj|BAE28111.1| unnamed protein product [Mus musculus]
Length = 412
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/105 (65%), Positives = 88/105 (83%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+ RD
Sbjct: 157 GTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRD 216
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
E+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 217 EQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
>gi|74194185|dbj|BAE24650.1| unnamed protein product [Mus musculus]
Length = 396
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/105 (65%), Positives = 88/105 (83%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+ RD
Sbjct: 157 GTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRD 216
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
E+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 217 EQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
>gi|349604123|gb|AEP99763.1| Cleavage and polyadenylation specificity factor subunit 2-like
protein, partial [Equus caballus]
Length = 281
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/105 (65%), Positives = 88/105 (83%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+ RD
Sbjct: 64 GTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRD 123
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
E+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 124 EQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 168
>gi|456753050|gb|JAA74086.1| cleavage and polyadenylation specific factor 2, 100kDa [Sus scrofa]
Length = 782
Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 68/108 (62%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +G+VL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGSVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 443 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 477
>gi|350587145|ref|XP_001926907.3| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Sus scrofa]
Length = 438
Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 68/105 (64%), Positives = 88/105 (83%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+ RD
Sbjct: 157 GTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRD 216
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
E+L+TN+L+TLR +G+VL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 217 EQLLTNVLETLRGDGSVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
>gi|357610700|gb|EHJ67102.1| putative cleavage and polyadenylation specificity factor 100 kDa
subunit [Danaus plexippus]
Length = 818
Score = 151 bits (381), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 68/110 (61%), Positives = 85/110 (77%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G +W+I GEE+IVY DFN KKERHLNGC +++ +RP++++ M+A Y Q RRR
Sbjct: 154 LLGGTVWRIAAPGEEDIVYAPDFNHKKERHLNGCEIEKIMRPSLLLLGAMNADYVQQRRR 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
RDE+LMT IL TLR G+VLV DTAGRVLEL HML+QLWRNKDSGLV+
Sbjct: 214 LRDEKLMTTILSTLRGGGSVLVCTDTAGRVLELAHMLDQLWRNKDSGLVA 263
>gi|193676458|ref|XP_001951701.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like [Acyrthosiphon pisum]
Length = 729
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/105 (68%), Positives = 84/105 (80%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G IW+I K GEE+IVY VDFN KKERHLNG L+R RP+++I D +A Y Q RRR+RD
Sbjct: 157 GTIWRISKVGEEDIVYAVDFNHKKERHLNGSDLERLGRPSLLILDCFNAAYSQPRRRSRD 216
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
E LMT IL TLR GNVL+A+DTAGRVLEL HML+QLWRNK+SGL
Sbjct: 217 EALMTCILTTLRAKGNVLMAIDTAGRVLELMHMLDQLWRNKESGL 261
>gi|312375001|gb|EFR22454.1| hypothetical protein AND_15244 [Anopheles darlingi]
Length = 772
Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/107 (73%), Positives = 92/107 (85%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G IWKIVK GEE+IVY DFN KKERHLNGC L++ RP+++ITD +A YQQARRR RD
Sbjct: 157 GTIWKIVKVGEEDIVYATDFNHKKERHLNGCELEKLQRPSLLITDAYNARYQQARRRARD 216
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
E+ MTNILQTLRNNGNVLV VDTAGRVLEL HML+QLW+NK+SGL++
Sbjct: 217 EKFMTNILQTLRNNGNVLVTVDTAGRVLELAHMLDQLWKNKESGLMA 263
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 25/29 (86%)
Query: 7 ANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
+++ FFKS+KK + MFPFHE KIKYDEYG
Sbjct: 443 SHTGFFKSSKKHYAMFPFHEEKIKYDEYG 471
>gi|158290938|ref|XP_312464.4| AGAP002474-PA [Anopheles gambiae str. PEST]
gi|157018137|gb|EAA08192.4| AGAP002474-PA [Anopheles gambiae str. PEST]
Length = 745
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 79/110 (71%), Positives = 93/110 (84%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK GEE+IVY DFN KKERHLNGC L++ RP+++ITD +A YQQARRR
Sbjct: 154 LIGGTIWKIVKVGEEDIVYATDFNHKKERHLNGCELEKLQRPSLLITDAYNARYQQARRR 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
RDE+ MTNILQTLRNNGNVLV VDTAGRVLEL HML+QLW+NK+SGL++
Sbjct: 214 ARDEKFMTNILQTLRNNGNVLVTVDTAGRVLELAHMLDQLWKNKESGLMA 263
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 25/29 (86%)
Query: 7 ANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
+++ FFKS+KK + MFPFHE KIKYDEYG
Sbjct: 443 SHTGFFKSSKKNYAMFPFHEEKIKYDEYG 471
>gi|328722057|ref|XP_001949295.2| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like [Acyrthosiphon pisum]
Length = 724
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 72/105 (68%), Positives = 84/105 (80%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G IWKI K GEE+IVY VDFN +KERHLNG L++ RP+++I D +A Y Q RRR+RD
Sbjct: 157 GTIWKISKVGEEDIVYAVDFNHRKERHLNGSDLEKLGRPSLLILDCFNAAYAQPRRRSRD 216
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
E LMT IL TLR GNVL+AVDTAGRVLEL HML+QLWRNK+SGL
Sbjct: 217 EALMTCILTTLRVKGNVLMAVDTAGRVLELIHMLDQLWRNKESGL 261
>gi|170046825|ref|XP_001850949.1| cleavage and polyadenylation specificity factor subunit 2 [Culex
quinquefasciatus]
gi|167869453|gb|EDS32836.1| cleavage and polyadenylation specificity factor subunit 2 [Culex
quinquefasciatus]
Length = 747
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 78/110 (70%), Positives = 93/110 (84%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWK+VK GEE+IVY DFN KKERHLNGC L++ RP+++ITD +A YQQARRR
Sbjct: 154 LIGGTIWKVVKVGEEDIVYATDFNHKKERHLNGCELEKLQRPSLLITDAYNARYQQARRR 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
RDE+ MTNILQTLRNNGNVLV VDTAGRVLEL HML+QLW+NK+SGL++
Sbjct: 214 ARDEKFMTNILQTLRNNGNVLVTVDTAGRVLELAHMLDQLWKNKESGLMA 263
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 26/29 (89%)
Query: 7 ANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
+++ FFKS+KKQ+ MFPFHE KIK+DEYG
Sbjct: 444 SHTGFFKSSKKQYAMFPFHEEKIKFDEYG 472
>gi|156399337|ref|XP_001638458.1| predicted protein [Nematostella vectensis]
gi|156225579|gb|EDO46395.1| predicted protein [Nematostella vectensis]
Length = 737
Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/116 (58%), Positives = 92/116 (79%), Gaps = 1/116 (0%)
Query: 38 SSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSA 97
+ +A G I G +WKIVK+GEE+I+Y VD+N KKERHLNG VL+ RP+++ITD+ +A
Sbjct: 147 TPYAAGHMI-GGTMWKIVKDGEEDIIYAVDYNHKKERHLNGAVLETLSRPSLLITDSFNA 205
Query: 98 IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
+ Q RRR RD +LM IL+T+R +GNV++A+DTAGRVLEL+ +L+QLWRN DSGL
Sbjct: 206 LNIQTRRRERDTQLMGEILKTMRRHGNVMIAIDTAGRVLELSQLLDQLWRNLDSGL 261
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYG 35
S FFK + FPMFP HE K K+D+YG
Sbjct: 447 SSFFK-QARSFPMFPCHEEKAKWDDYG 472
>gi|340370496|ref|XP_003383782.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Amphimedon queenslandica]
Length = 730
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/105 (61%), Positives = 84/105 (80%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G IWKIVK+GEEEIVY VD+N KKERHL+G V D F RP ++ITD +A+ QARR+ RD
Sbjct: 157 GTIWKIVKDGEEEIVYAVDYNHKKERHLDGAVFDNFSRPHLLITDAYNALSVQARRKERD 216
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
+ L+ I+ TLR NGNVL+AVDTAGRVLEL+ +L+Q+WR+++ G
Sbjct: 217 KALLDKIVNTLRKNGNVLIAVDTAGRVLELSQLLDQMWRHQELGF 261
Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
MT A S FFK K FPM+ F KIK+DEYG
Sbjct: 448 MTDEGKAKSSFFKQTK-SFPMYHFKGEKIKWDEYG 481
>gi|324503279|gb|ADY41427.1| Cleavage and polyadenylation specificity factor subunit 2 [Ascaris
suum]
Length = 841
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 84/107 (78%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G IW+I K G+EEIVY VDFN KKERHLNGC + RP ++ITD +A+Y Q RR+ RD
Sbjct: 156 GAIWRITKMGDEEIVYAVDFNHKKERHLNGCTFEGIGRPNLMITDAFNALYNQPRRKQRD 215
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
E+L+T +L T+R+ G+V++ +DTAGR+LE+ H+L+QLW N ++GL++
Sbjct: 216 EQLVTKLLGTVRDGGDVMIVIDTAGRILEIAHLLDQLWHNAEAGLMT 262
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYG 35
S FFK NKK FP+FP+ E K ++D+YG
Sbjct: 511 SSFFKQNKKAFPVFPYIEEKTRWDDYG 537
>gi|402591052|gb|EJW84982.1| cleavage and polyadenylation specificity factor subunit 2
[Wuchereria bancrofti]
Length = 809
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 85/107 (79%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G IW+I K G+EEIVY VDFN +KERHLNGC + RP ++ITD+ +A+Y Q RR+ RD
Sbjct: 156 GAIWRITKMGDEEIVYAVDFNHRKERHLNGCTFEGIGRPNLLITDSFNALYNQPRRKQRD 215
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
E+L+T +L T+R+ G+V++ +DTAGRVLE+ H+L+QLW N ++GL++
Sbjct: 216 EQLVTRLLGTVRDGGDVMIVIDTAGRVLEIAHLLDQLWHNAEAGLMT 262
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYG 35
S FFK +KK FPMFP+ E K ++D+YG
Sbjct: 482 SSFFKQSKKSFPMFPYIEEKTRWDDYG 508
>gi|393910519|gb|EFO19846.2| cleavage and polyadenylation specificity factor subunit 2 [Loa loa]
Length = 828
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 86/110 (78%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IW+I K G+EEIVY VDFN +KERHLNGC + RP ++ITD+ +A+Y Q RR+
Sbjct: 153 MIGGAIWRITKMGDEEIVYAVDFNHRKERHLNGCTFEGIGRPNLLITDSFNALYNQPRRK 212
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
RDE+L+T +L T+R+ G+V++ +DTAGRVLE+ H+L+QLW N ++GL++
Sbjct: 213 QRDEQLVTRLLGTVRDGGDVMIVIDTAGRVLEIAHLLDQLWHNAEAGLMT 262
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYG 35
S FFK +KK FPMFP+ E K ++D+YG
Sbjct: 503 SSFFKQSKKSFPMFPYIEEKTRWDDYG 529
>gi|312084310|ref|XP_003144223.1| cleavage and polyadenylation specificity factor subunit 2 [Loa loa]
Length = 837
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 86/110 (78%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IW+I K G+EEIVY VDFN +KERHLNGC + RP ++ITD+ +A+Y Q RR+
Sbjct: 153 MIGGAIWRITKMGDEEIVYAVDFNHRKERHLNGCTFEGIGRPNLLITDSFNALYNQPRRK 212
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
RDE+L+T +L T+R+ G+V++ +DTAGRVLE+ H+L+QLW N ++GL++
Sbjct: 213 QRDEQLVTRLLGTVRDGGDVMIVIDTAGRVLEIAHLLDQLWHNAEAGLMT 262
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYG 35
S FFK +KK FPMFP+ E K ++D+YG
Sbjct: 512 SSFFKQSKKSFPMFPYIEEKTRWDDYG 538
>gi|170581110|ref|XP_001895540.1| cleavage and polyadenylation specificity factor [Brugia malayi]
gi|158597460|gb|EDP35606.1| cleavage and polyadenylation specificity factor, putative [Brugia
malayi]
Length = 831
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 86/110 (78%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IW+I K G+EEIVY VDFN +KERHLNGC + RP ++ITD+ +A+Y Q RR+
Sbjct: 153 MIGGAIWRITKMGDEEIVYAVDFNHRKERHLNGCTFEGIGRPNLLITDSFNALYNQPRRK 212
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
RDE+L+T +L T+R+ G+V++ +DTAGRVLE+ H+L+QLW N ++GL++
Sbjct: 213 QRDEQLVTRLLGTVRDGGDVMIVIDTAGRVLEIAHLLDQLWHNAEAGLMT 262
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYG 35
S FFK +KK FPMFP+ E K ++D+YG
Sbjct: 504 SSFFKQSKKSFPMFPYIEEKTRWDDYG 530
>gi|393910520|gb|EJD75913.1| cleavage and polyadenylation specificity factor subunit 2, variant
[Loa loa]
Length = 664
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 86/110 (78%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IW+I K G+EEIVY VDFN +KERHLNGC + RP ++ITD+ +A+Y Q RR+
Sbjct: 153 MIGGAIWRITKMGDEEIVYAVDFNHRKERHLNGCTFEGIGRPNLLITDSFNALYNQPRRK 212
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
RDE+L+T +L T+R+ G+V++ +DTAGRVLE+ H+L+QLW N ++GL++
Sbjct: 213 QRDEQLVTRLLGTVRDGGDVMIVIDTAGRVLEIAHLLDQLWHNAEAGLMT 262
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYG 35
S FFK +KK FPMFP+ E K ++D+YG
Sbjct: 503 SSFFKQSKKSFPMFPYIEEKTRWDDYG 529
>gi|195145330|ref|XP_002013649.1| GL24248 [Drosophila persimilis]
gi|194102592|gb|EDW24635.1| GL24248 [Drosophila persimilis]
Length = 583
Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 77/89 (86%)
Query: 67 DFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVL 126
D +KERHL+GC LDR RP+++ITD +A YQQARRR RDE+LMTNILQT+RNNGNVL
Sbjct: 1 DSTTRKERHLSGCELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVL 60
Query: 127 VAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
+A DTAGR+LEL HML+QLW+NK+SGL++
Sbjct: 61 IAADTAGRMLELAHMLDQLWKNKESGLMA 89
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYG 35
+S FFKSNK+ MFP+HE KIKYDEYG
Sbjct: 272 HSGFFKSNKRHHVMFPYHEEKIKYDEYG 299
>gi|339247939|ref|XP_003375603.1| cleavage and polyadenylation specificity factor subunit 2
[Trichinella spiralis]
gi|316971010|gb|EFV54853.1| cleavage and polyadenylation specificity factor subunit 2
[Trichinella spiralis]
Length = 1188
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 67/135 (49%), Positives = 89/135 (65%), Gaps = 8/135 (5%)
Query: 28 KIKYDEYGNHSSWAYGEEIFT--------GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC 79
++KY++ + +G +I G IW+I K GEEEIVY VDFN KKERHLNGC
Sbjct: 128 QVKYNQQVSMKGRGHGLQIVPLPAGHMIGGTIWRITKMGEEEIVYAVDFNHKKERHLNGC 187
Query: 80 VLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELT 139
L+ RP ++ITD RR+ RDE L++ IL+TLR+ GNVL+ VDTAGRVLEL
Sbjct: 188 PLESIARPNLLITDAYMCGTALLRRKFRDEALLSTILKTLRSGGNVLIVVDTAGRVLELV 247
Query: 140 HMLEQLWRNKDSGLV 154
+L+QLW N ++GL+
Sbjct: 248 QLLDQLWHNAEAGLL 262
>gi|297695726|ref|XP_002825082.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 2 [Pongo abelii]
Length = 747
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/111 (57%), Positives = 86/111 (77%), Gaps = 3/111 (2%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKER-HLNGCVLDR--FIRPTVVITDTMSAIYQQA 102
+ G IWKIVK+GEEEIVY VDFN K+E +L+G + P+++ITD+ +A Y Q
Sbjct: 116 MIGGTIWKIVKDGEEEIVYAVDFNHKREMLNLSGKPFSSTMYYSPSLLITDSFNATYVQP 175
Query: 103 RRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RR+ RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 176 RRKQRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 226
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 408 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 442
>gi|198428144|ref|XP_002129804.1| PREDICTED: similar to cleavage and polyadenylation specific factor
2 [Ciona intestinalis]
Length = 784
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 85/115 (73%), Gaps = 8/115 (6%)
Query: 49 GPIWKIVKEGEE-EIVYGVDFNLKKERHLNGCVLDRFI-------RPTVVITDTMSAIYQ 100
G WKI+K+ EE EIVY VDFN K+ERHLNGC L P ++ITD +A+YQ
Sbjct: 157 GTAWKIIKDDEEGEIVYAVDFNHKRERHLNGCSLFESSGETWSGKPPQLMITDGYNAMYQ 216
Query: 101 QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
QARR+ RDE+L+T I++T+R +GNVL+AVDTAGRVLEL +L+QLWR+ SGL +
Sbjct: 217 QARRKLRDEQLLTRIIETMRGDGNVLIAVDTAGRVLELAILLDQLWRDTRSGLCA 271
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 11 FFKSNKKQFPMFPFHETKIKYDEYG 35
FFK KK FPM+PF E +IK+DEYG
Sbjct: 454 FFKQLKKTFPMYPFIEPRIKWDEYG 478
>gi|17559452|ref|NP_504822.1| Protein CPSF-2 [Caenorhabditis elegans]
gi|18201967|sp|O17403.1|CPSF2_CAEEL RecName: Full=Probable cleavage and polyadenylation specificity
factor subunit 2; AltName: Full=Cleavage and
polyadenylation specificity factor 100 kDa subunit;
Short=CPSF 100 kDa subunit
gi|351057814|emb|CCD64424.1| Protein CPSF-2 [Caenorhabditis elegans]
Length = 843
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 85/130 (65%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
+++T + + G H + + G IW+I + E+IVY VDFN KKERHLNGC D
Sbjct: 131 YNQTVVLKGDSGVHFTALPAGHMLGGSIWRICRVTGEDIVYCVDFNHKKERHLNGCSFDN 190
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
F RP ++IT Q RR+ RDE+L+T IL+T+R G+ ++ +DTAGRVLEL H+L+
Sbjct: 191 FNRPHLLITGAHHISLPQMRRKDRDEQLVTKILRTVRQKGDCMIVIDTAGRVLELAHLLD 250
Query: 144 QLWRNKDSGL 153
QLW N D+GL
Sbjct: 251 QLWSNADAGL 260
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYG 35
+ FFK+ KK FPMFP+ E K+K+D+YG
Sbjct: 479 ASFFKTTKKSFPMFPYIEEKVKWDDYG 505
>gi|358338982|dbj|GAA43367.2| cleavage and polyadenylation specificity factor subunit 2, partial
[Clonorchis sinensis]
Length = 995
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 78/107 (72%), Gaps = 1/107 (0%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G IWK+VKE + +IVY VDFN KKERHLNG D +RP ++I D + +Y RR+ RD
Sbjct: 133 GTIWKLVKE-DTDIVYAVDFNHKKERHLNGATFDACMRPHLLIMDASNTMYTHPRRKDRD 191
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
E L +IL+TLR GN+LVAVDTAGR LE+ H LEQ W N+DSG+++
Sbjct: 192 ETLRHSILKTLRRGGNILVAVDTAGRCLEVAHFLEQCWLNQDSGMMA 238
>gi|256077070|ref|XP_002574831.1| cleavage and polyadenylation specificity factor [Schistosoma
mansoni]
Length = 928
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 77/107 (71%), Gaps = 1/107 (0%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G IWK+VKE + IVY +DFN KKERHLNG D IRP ++I D + +Y Q RR+ RD
Sbjct: 158 GTIWKLVKE-DTSIVYALDFNHKKERHLNGATFDACIRPHLLIMDGSNTLYTQPRRKDRD 216
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
E L +L++LR GNVL+AVDTAGR LE+ H LEQ W N++SGL++
Sbjct: 217 ENLRQTVLKSLRRGGNVLIAVDTAGRCLEVAHFLEQCWLNQESGLMA 263
>gi|196012036|ref|XP_002115881.1| hypothetical protein TRIADDRAFT_30006 [Trichoplax adhaerens]
gi|190581657|gb|EDV21733.1| hypothetical protein TRIADDRAFT_30006 [Trichoplax adhaerens]
Length = 745
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/116 (56%), Positives = 89/116 (76%), Gaps = 2/116 (1%)
Query: 38 SSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSA 97
+ +A G + G IWKI+K+GEE+I+Y VD+N KKERHLNG VL+ P+++ITD +A
Sbjct: 147 TPYAAGH-MVGGTIWKIIKDGEEDIIYAVDYNHKKERHLNGSVLETLTHPSLLITDAYNA 205
Query: 98 IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
Y QA+RR RD++L++ +L LR+ GNVL+AVDTAGRVLEL+ +L+ LWR KD GL
Sbjct: 206 QYNQAKRRDRDQKLISRVLNALRSGGNVLIAVDTAGRVLELSLLLDHLWR-KDPGL 260
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 6 DANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
D S FFK PM+PF ET+IK+DEYG
Sbjct: 442 DRRSSFFKKAVVH-PMYPFSETRIKWDEYG 470
>gi|341883504|gb|EGT39439.1| CBN-CPSF-2 protein [Caenorhabditis brenneri]
Length = 822
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 84/130 (64%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
+++T + + G H + + G IW+I + E+I+Y VDFN KKERHL+GC D
Sbjct: 131 YNQTVVLKGDSGVHFTAIPAGHMIGGSIWRICRVTGEDIIYCVDFNHKKERHLSGCSFDN 190
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
F RP ++IT Q +R+ RDE L+T IL+T+R G+ +V +DTAGRVLE+ ++L+
Sbjct: 191 FNRPHLLITGAHHISLPQMKRKDRDELLVTKILRTVRQKGDCMVVIDTAGRVLEIAYLLD 250
Query: 144 QLWRNKDSGL 153
QLW N D+GL
Sbjct: 251 QLWSNADAGL 260
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYG 35
+ FFK+ KK FPM+P+ E KIK+D+YG
Sbjct: 479 ASFFKTTKKSFPMYPYIEEKIKWDDYG 505
>gi|308480408|ref|XP_003102411.1| CRE-CPSF-2 protein [Caenorhabditis remanei]
gi|308262077|gb|EFP06030.1| CRE-CPSF-2 protein [Caenorhabditis remanei]
Length = 850
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 84/130 (64%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
+++T + + G H + + G IW+I + E+I+Y VDFN KK+RHLNGC D
Sbjct: 131 YNQTVVLKGDSGVHFTAMPAGHMIGGSIWRICRVTGEDIIYCVDFNHKKDRHLNGCSFDN 190
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
F RP ++IT Q +R RD++L+T IL+T+R G+ ++ +DTAGRVLEL ++L+
Sbjct: 191 FNRPHLLITGAHHISLPQMKRMDRDQQLVTKILRTVRQKGDCMIVIDTAGRVLELAYLLD 250
Query: 144 QLWRNKDSGL 153
QLW N D+GL
Sbjct: 251 QLWGNADAGL 260
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYG 35
+ FFKS KK FPM+P+ E K+K+D+YG
Sbjct: 481 ASFFKSTKKSFPMYPYIEEKVKWDDYG 507
>gi|224121102|ref|XP_002330904.1| predicted protein [Populus trichocarpa]
gi|222872726|gb|EEF09857.1| predicted protein [Populus trichocarpa]
Length = 740
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 82/130 (63%), Gaps = 13/130 (10%)
Query: 27 TKIKYDEYGNHSSWAYGEEIFTGP----------IWKIVKEGEEEIVYGVDFNLKKERHL 76
T++ Y + NH GE I P +WKI K+GE+ +VY VDFN +KERHL
Sbjct: 127 TRLTYSQ--NHHLSGKGEGIVIAPHVAGHLLGGTVWKITKDGED-VVYAVDFNHRKERHL 183
Query: 77 NGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVL 136
NG VL+ F RP V+ITD +A+ Q R+ RD++ + IL+TL GNVL+ VD+AGRVL
Sbjct: 184 NGTVLESFYRPAVLITDAYNALNSQPSRQQRDKQFLETILKTLEGGGNVLLPVDSAGRVL 243
Query: 137 ELTHMLEQLW 146
EL +LEQ W
Sbjct: 244 ELLLILEQFW 253
>gi|225464483|ref|XP_002268591.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Vitis vinifera]
gi|302143847|emb|CBI22708.3| unnamed protein product [Vitis vinifera]
Length = 740
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 84/130 (64%), Gaps = 13/130 (10%)
Query: 27 TKIKYDEYGNHSSWAYGEEIFTGP----------IWKIVKEGEEEIVYGVDFNLKKERHL 76
T++ Y + N+ + GE I P +WKI K+GE+ ++Y VDFN +KER L
Sbjct: 127 TRLTYSQ--NYHLFGKGEGIVIAPHVAGHLLGGTVWKITKDGED-VIYAVDFNHRKERLL 183
Query: 77 NGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVL 136
NG VL+ F+RP V+ITD +A+ Q RR RD+ + IL+TLR +GNVL+ VDTAGRVL
Sbjct: 184 NGTVLESFVRPAVLITDAYNALNNQPSRRQRDQEFLDVILKTLRGDGNVLLPVDTAGRVL 243
Query: 137 ELTHMLEQLW 146
EL +LEQ W
Sbjct: 244 ELMLILEQYW 253
>gi|268558798|ref|XP_002637390.1| Hypothetical protein CBG19097 [Caenorhabditis briggsae]
Length = 838
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 84/125 (67%), Gaps = 1/125 (0%)
Query: 29 IKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPT 88
+K D N ++ G I G +W+I + E+I+Y VDFN +K+RHL+GC D F RP
Sbjct: 137 LKGDSGVNFTAMPAGHMI-GGSMWRICRITGEDIIYCVDFNHRKDRHLSGCSFDNFNRPH 195
Query: 89 VVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
++IT Q +R+ RDE+L+T IL+T+R G+ ++ +DTAGRVLEL ++L+QLW N
Sbjct: 196 LLITGAHHISLPQMKRKDRDEQLVTKILRTVRQKGDCMIVIDTAGRVLELAYLLDQLWAN 255
Query: 149 KDSGL 153
+D+GL
Sbjct: 256 QDAGL 260
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYG 35
+ FFKS KK FPM+P+ E K+K+D+YG
Sbjct: 479 ASFFKSTKKSFPMYPYIEEKVKWDDYG 505
>gi|229553940|sp|A8XUS3.2|CPSF2_CAEBR RecName: Full=Probable cleavage and polyadenylation specificity
factor subunit 2; AltName: Full=Cleavage and
polyadenylation specificity factor 100 kDa subunit;
Short=CPSF 100 kDa subunit
Length = 842
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 84/125 (67%), Gaps = 1/125 (0%)
Query: 29 IKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPT 88
+K D N ++ G I G +W+I + E+I+Y VDFN +K+RHL+GC D F RP
Sbjct: 137 LKGDSGVNFTAMPAGHMI-GGSMWRICRITGEDIIYCVDFNHRKDRHLSGCSFDNFNRPH 195
Query: 89 VVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
++IT Q +R+ RDE+L+T IL+T+R G+ ++ +DTAGRVLEL ++L+QLW N
Sbjct: 196 LLITGAHHISLPQMKRKDRDEQLVTKILRTVRQKGDCMIVIDTAGRVLELAYLLDQLWAN 255
Query: 149 KDSGL 153
+D+GL
Sbjct: 256 QDAGL 260
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYG 35
+ FFKS KK FPM+P+ E K+K+D+YG
Sbjct: 479 ASFFKSTKKSFPMYPYIEEKVKWDDYG 505
>gi|255553723|ref|XP_002517902.1| cleavage and polyadenylation specificity factor, putative [Ricinus
communis]
gi|223542884|gb|EEF44420.1| cleavage and polyadenylation specificity factor, putative [Ricinus
communis]
Length = 740
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/134 (48%), Positives = 84/134 (62%), Gaps = 14/134 (10%)
Query: 27 TKIKYDEYGNHSSWAYGEEIFTGP----------IWKIVKEGEEEIVYGVDFNLKKERHL 76
T++ Y + NH GE I P +WKI K+GE+ +VY VDFN +KERHL
Sbjct: 127 TRLTYSQ--NHHLSGKGEGIVIAPHVAGHLLGGTVWKITKDGED-VVYAVDFNHRKERHL 183
Query: 77 NGCVLDRFIRPTVVITDTMSAIYQQARRRTRD-ERLMTNILQTLRNNGNVLVAVDTAGRV 135
NG VL+ F+RP V+ITD +A+ Q R+ RD E L IL+TL GNVL+ VDTAGRV
Sbjct: 184 NGTVLESFVRPAVLITDAYNALSNQPPRQQRDKEFLEKTILKTLEAGGNVLLPVDTAGRV 243
Query: 136 LELTHMLEQLWRNK 149
LEL +LEQ W ++
Sbjct: 244 LELLLILEQFWAHR 257
>gi|449528453|ref|XP_004171219.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 2-like, partial [Cucumis
sativus]
Length = 501
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 82/133 (61%), Gaps = 13/133 (9%)
Query: 27 TKIKYDEYGNHSSWAYGEEIFTGP----------IWKIVKEGEEEIVYGVDFNLKKERHL 76
T++ Y + NH GE I P +WKI K+GE+ ++Y VDFN +KERHL
Sbjct: 127 TRLTYSQ--NHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGED-VIYAVDFNHRKERHL 183
Query: 77 NGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVL 136
NG +L+ F+RP V+ITD +A+ Q RR +D+ I +TLR NGNVL+ VDTAGRVL
Sbjct: 184 NGTILESFVRPAVLITDAYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVL 243
Query: 137 ELTHMLEQLWRNK 149
EL +LE W +
Sbjct: 244 ELIQILEWYWEEE 256
>gi|449446027|ref|XP_004140773.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Cucumis sativus]
Length = 738
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 82/133 (61%), Gaps = 13/133 (9%)
Query: 27 TKIKYDEYGNHSSWAYGEEIFTGP----------IWKIVKEGEEEIVYGVDFNLKKERHL 76
T++ Y + NH GE I P +WKI K+GE+ ++Y VDFN +KERHL
Sbjct: 127 TRLTYSQ--NHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGED-VIYAVDFNHRKERHL 183
Query: 77 NGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVL 136
NG +L+ F+RP V+ITD +A+ Q RR +D+ I +TLR NGNVL+ VDTAGRVL
Sbjct: 184 NGTILESFVRPAVLITDAYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVL 243
Query: 137 ELTHMLEQLWRNK 149
EL +LE W +
Sbjct: 244 ELIQILEWYWEEE 256
>gi|357440035|ref|XP_003590295.1| Cleavage and polyadenylation specificity factor subunit [Medicago
truncatula]
gi|355479343|gb|AES60546.1| Cleavage and polyadenylation specificity factor subunit [Medicago
truncatula]
Length = 630
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 82/134 (61%), Gaps = 13/134 (9%)
Query: 27 TKIKYDEYGNHSSWAYGEEIFTGP----------IWKIVKEGEEEIVYGVDFNLKKERHL 76
T++ Y + NH GE I P IWKI K+GE+ ++Y VDFN +KERHL
Sbjct: 127 TRLTYSQ--NHHLSGKGEGIVIAPHTAGHLLGGTIWKITKDGED-VIYAVDFNHRKERHL 183
Query: 77 NGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVL 136
NG VL F+RP V+ITD +A+ Q RR +D+ + +TLR GNVL+ VDTAGR+L
Sbjct: 184 NGTVLGSFVRPAVLITDAYNALNNQPYRRQKDKEFGDILKKTLRAGGNVLLPVDTAGRIL 243
Query: 137 ELTHMLEQLWRNKD 150
EL MLE W +++
Sbjct: 244 ELILMLESYWADEN 257
>gi|356559788|ref|XP_003548179.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like isoform 1 [Glycine max]
Length = 738
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 80/134 (59%), Gaps = 13/134 (9%)
Query: 27 TKIKYDEYGNHSSWAYGEEIFTGP----------IWKIVKEGEEEIVYGVDFNLKKERHL 76
T++ Y + NH GE I P IWKI K+GE+ ++Y VDFN +KERHL
Sbjct: 127 TRLTYSQ--NHHFSGKGEGIVIAPHVAGHLLGGTIWKITKDGED-VIYAVDFNHRKERHL 183
Query: 77 NGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVL 136
NG VL F+RP V+ITD +A+ Q RR D+ + +TLR GNVL+ VDT GRVL
Sbjct: 184 NGTVLGSFVRPAVLITDAYNALNNQPYRRQNDKEFGDILKKTLREGGNVLLPVDTVGRVL 243
Query: 137 ELTHMLEQLWRNKD 150
EL MLE W +++
Sbjct: 244 ELILMLESYWTDEN 257
>gi|356559790|ref|XP_003548180.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like isoform 2 [Glycine max]
Length = 743
Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 82/139 (58%), Gaps = 18/139 (12%)
Query: 27 TKIKYDEYGNHSSWAYGEEIFTGP----------IWKIVKEGEEEIVYGVDFNLKKERHL 76
T++ Y + NH GE I P IWKI K+GE+ ++Y VDFN +KERHL
Sbjct: 127 TRLTYSQ--NHHFSGKGEGIVIAPHVAGHLLGGTIWKITKDGED-VIYAVDFNHRKERHL 183
Query: 77 NGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN-----ILQTLRNNGNVLVAVDT 131
NG VL F+RP V+ITD +A+ Q RR D+ N +++TLR GNVL+ VDT
Sbjct: 184 NGTVLGSFVRPAVLITDAYNALNNQPYRRQNDKEFGGNHLFNLVIKTLREGGNVLLPVDT 243
Query: 132 AGRVLELTHMLEQLWRNKD 150
GRVLEL MLE W +++
Sbjct: 244 VGRVLELILMLESYWTDEN 262
>gi|356530856|ref|XP_003533995.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like isoform 1 [Glycine max]
Length = 736
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 80/134 (59%), Gaps = 13/134 (9%)
Query: 27 TKIKYDEYGNHSSWAYGEEIFTGP----------IWKIVKEGEEEIVYGVDFNLKKERHL 76
T++ Y + NH GE I P IWKI K+GE+ ++Y VDFN +KERHL
Sbjct: 127 TRLTYSQ--NHHFSGKGEGIVIAPHVAGHLLGGTIWKITKDGED-VIYAVDFNHRKERHL 183
Query: 77 NGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVL 136
NG VL F+RP V+ITD +A+ Q RR D+ + +TLR GNVL+ VDT GRVL
Sbjct: 184 NGTVLGSFVRPAVLITDAYNALNNQPYRRQNDKEFGDILKKTLRAGGNVLLPVDTVGRVL 243
Query: 137 ELTHMLEQLWRNKD 150
EL MLE W +++
Sbjct: 244 ELILMLELYWADEN 257
>gi|356530858|ref|XP_003533996.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like isoform 2 [Glycine max]
Length = 742
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 81/137 (59%), Gaps = 16/137 (11%)
Query: 27 TKIKYDEYGNHSSWAYGEEIFTGP----------IWKIVKEGEEEIVYGVDFNLKKERHL 76
T++ Y + NH GE I P IWKI K+GE+ ++Y VDFN +KERHL
Sbjct: 127 TRLTYSQ--NHHFSGKGEGIVIAPHVAGHLLGGTIWKITKDGED-VIYAVDFNHRKERHL 183
Query: 77 NGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNI---LQTLRNNGNVLVAVDTAG 133
NG VL F+RP V+ITD +A+ Q RR D+ N L+TLR GNVL+ VDT G
Sbjct: 184 NGTVLGSFVRPAVLITDAYNALNNQPYRRQNDKEFGGNHLFNLKTLRAGGNVLLPVDTVG 243
Query: 134 RVLELTHMLEQLWRNKD 150
RVLEL MLE W +++
Sbjct: 244 RVLELILMLELYWADEN 260
>gi|168010331|ref|XP_001757858.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691134|gb|EDQ77498.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 724
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 75/112 (66%), Gaps = 2/112 (1%)
Query: 38 SSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSA 97
+ +A G + G IWKI K+ EEI+Y VDFN +KERHLN VL+ F+RP V+ITD +A
Sbjct: 147 TPYAAGH-LLGGTIWKITKD-TEEIIYAVDFNHRKERHLNKTVLENFVRPAVLITDAYNA 204
Query: 98 IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+ Q R+ RD+ + IL+ LR GNVL+ V+TAGRVLEL LE W ++
Sbjct: 205 LNNQPPRKQRDQEFIDMILKVLRAEGNVLLPVETAGRVLELILHLESNWAHQ 256
>gi|357127861|ref|XP_003565596.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Brachypodium distachyon]
Length = 738
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 73/104 (70%), Gaps = 1/104 (0%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G +WKI K+GE+ +VY VDFN +KERHLNG L F+RP V+ITD +A+ Q +R
Sbjct: 154 LLGGTVWKITKDGED-VVYAVDFNHRKERHLNGTALGSFVRPAVLITDAYNALNNQVYKR 212
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+D+ + ++++ L + G+VL+ VDTAGRVLEL ++EQ W +
Sbjct: 213 QQDQDFIDSMVKVLASGGSVLLPVDTAGRVLELLLIMEQYWAQR 256
>gi|357160194|ref|XP_003578687.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Brachypodium distachyon]
Length = 738
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 73/104 (70%), Gaps = 1/104 (0%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G +WKI K+GE+ +VY VDFN +KERHLNG L F+RP V+ITD +A+ Q +R
Sbjct: 154 LLGGTVWKITKDGED-VVYAVDFNHRKERHLNGTALGSFVRPAVLITDAYNALNNQVYKR 212
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+D+ + ++++ L + G+VL+ VDTAGRVLEL ++EQ W +
Sbjct: 213 QQDQDFIDSMVKVLASGGSVLLPVDTAGRVLELLLIMEQYWAQR 256
>gi|172087214|ref|XP_001913149.1| cleavage and polyadenylation factor [Oikopleura dioica]
gi|18029276|gb|AAL56454.1| cleavage and polyadenylation factor-like protein [Oikopleura
dioica]
Length = 765
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 74/125 (59%)
Query: 29 IKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPT 88
++ +YG + G WKI+K+ EEE VY VD N K+E HLNG LD F +PT
Sbjct: 136 VRGQDYGIQIMPVQAGHMIGGTTWKIMKDEEEEYVYCVDVNHKRETHLNGIQLDAFDKPT 195
Query: 89 VVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
++ITD + YQQ RR R ERL+ I T GNVL+ DTAGR LE+ MLE +W +
Sbjct: 196 LMITDCSTYGYQQERRAKRTERLVQRIQNTTSKGGNVLITTDTAGRSLEMALMLEGIWND 255
Query: 149 KDSGL 153
+ GL
Sbjct: 256 ERYGL 260
Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 22/25 (88%)
Query: 11 FFKSNKKQFPMFPFHETKIKYDEYG 35
F K+ K++FP+FPF+E +IK+D+YG
Sbjct: 455 FKKARKEKFPLFPFNENRIKWDDYG 479
>gi|297808393|ref|XP_002872080.1| CPSF100 [Arabidopsis lyrata subsp. lyrata]
gi|297317917|gb|EFH48339.1| CPSF100 [Arabidopsis lyrata subsp. lyrata]
Length = 739
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 71/105 (67%), Gaps = 2/105 (1%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY-QQARR 104
+ G IW+I K+GE+ ++Y VD+N +KERHLNG VL F+RP V+ITD A+Y Q R
Sbjct: 154 MLGGSIWRITKDGED-VIYAVDYNHRKERHLNGTVLQSFVRPAVLITDAYHALYTNQTAR 212
Query: 105 RTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+ RD+ + I + L GNVL+ VDTAGRVLEL +LEQ W +
Sbjct: 213 QQRDKEFLDTISKHLEVGGNVLLPVDTAGRVLELLLILEQHWSQR 257
>gi|15237845|ref|NP_197776.1| cleavage and polyadenylation specificity factor subunit 2
[Arabidopsis thaliana]
gi|18203240|sp|Q9LKF9.2|CPSF2_ARATH RecName: Full=Cleavage and polyadenylation specificity factor
subunit 2; AltName: Full=Cleavage and polyadenylation
specificity factor 100 kDa subunit; Short=AtCPSF100;
Short=CPSF 100 kDa subunit; AltName: Full=Protein EMBRYO
DEFECTIVE 1265; AltName: Full=Protein ENHANCED SILENCING
PHENOTYPE 5
gi|10176855|dbj|BAB10061.1| cleavage and polyadenylation specificity factor [Arabidopsis
thaliana]
gi|14334618|gb|AAK59487.1| putative cleavage and polyadenylation specificity factor
[Arabidopsis thaliana]
gi|28393921|gb|AAO42368.1| putative cleavage and polyadenylation specificity factor
[Arabidopsis thaliana]
gi|332005845|gb|AED93228.1| cleavage and polyadenylation specificity factor subunit 2
[Arabidopsis thaliana]
Length = 739
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 71/105 (67%), Gaps = 2/105 (1%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY-QQARR 104
+ G IW+I K+GE+ ++Y VD+N +KERHLNG VL F+RP V+ITD A+Y Q R
Sbjct: 154 MLGGSIWRITKDGED-VIYAVDYNHRKERHLNGTVLQSFVRPAVLITDAYHALYTNQTAR 212
Query: 105 RTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+ RD+ + I + L GNVL+ VDTAGRVLEL +LEQ W +
Sbjct: 213 QQRDKEFLDTISKHLEVGGNVLLPVDTAGRVLELLLILEQHWSQR 257
>gi|9082326|gb|AAF82809.1|AF283277_1 polyadenylation cleavage/specificity factor 100 kDa subunit
[Arabidopsis thaliana]
Length = 739
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 71/105 (67%), Gaps = 2/105 (1%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY-QQARR 104
+ G IW+I K+GE+ ++Y VD+N +KERHLNG VL F+RP V+ITD A+Y Q R
Sbjct: 154 MLGGSIWRITKDGED-VIYAVDYNHRKERHLNGTVLQSFVRPAVLITDAYHALYTNQTAR 212
Query: 105 RTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+ RD+ + I + L GNVL+ VDTAGRVLEL +LEQ W +
Sbjct: 213 QQRDKEFLDTISKHLEVGGNVLLPVDTAGRVLELLLILEQHWSQR 257
>gi|313232558|emb|CBY19228.1| unnamed protein product [Oikopleura dioica]
Length = 764
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 79/134 (58%), Gaps = 7/134 (5%)
Query: 27 TKIKYDEYGNHSSWAYGEEIFT-------GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC 79
T++K+++ YG +I G WKI+K+ EEE VY VD N K+E HLNG
Sbjct: 126 TQLKHNQTEAVRGQDYGIQIMPVQGHMIGGTTWKIMKDEEEEYVYCVDVNHKRETHLNGI 185
Query: 80 VLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELT 139
LD F +PT++ITD + YQQ RR R ERL+ I T GNVL+ DTAGR LE+
Sbjct: 186 QLDAFDKPTLMITDCSTYGYQQERRAKRTERLVQRIQNTTSKGGNVLITTDTAGRSLEMA 245
Query: 140 HMLEQLWRNKDSGL 153
MLE +W ++ GL
Sbjct: 246 LMLEGIWNDERYGL 259
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 22/25 (88%)
Query: 11 FFKSNKKQFPMFPFHETKIKYDEYG 35
F K+ K++FP+FPF+E +IK+D+YG
Sbjct: 454 FKKARKEKFPLFPFNENRIKWDDYG 478
>gi|297808389|ref|XP_002872078.1| hypothetical protein ARALYDRAFT_910398 [Arabidopsis lyrata subsp.
lyrata]
gi|297317915|gb|EFH48337.1| hypothetical protein ARALYDRAFT_910398 [Arabidopsis lyrata subsp.
lyrata]
Length = 544
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 71/105 (67%), Gaps = 2/105 (1%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY-QQARR 104
+ G IW+I K+GE+ ++Y VD+N +KERHLNG VL F+RP V+ITD A+Y Q R
Sbjct: 78 MLGGSIWRITKDGED-VIYAVDYNHRKERHLNGTVLQSFVRPAVLITDAYHALYTNQTAR 136
Query: 105 RTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+ RD+ + I + L GNVL+ VDTAGRVLEL +LEQ W +
Sbjct: 137 QQRDKEFLDTISKHLEVGGNVLLPVDTAGRVLELLLILEQHWSQR 181
>gi|326495752|dbj|BAJ85972.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 726
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 80/133 (60%), Gaps = 13/133 (9%)
Query: 27 TKIKYDEYGNHSSWAYGEEIFTGP----------IWKIVKEGEEEIVYGVDFNLKKERHL 76
++KY + NH GE I P +WKI K+GE+ +VY VDFN +KERHL
Sbjct: 115 ARLKYSQ--NHLLKDKGEGIVIAPHVSGHLLGGTVWKITKDGED-VVYAVDFNHRKERHL 171
Query: 77 NGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVL 136
NG L F+RP V+ITD +A+ Q +R +D+ + ++++ L G+VL+ VDTAGRVL
Sbjct: 172 NGTTLGSFVRPAVLITDAYNALNNQVYKRQQDQDFIDSMVKVLSGGGSVLLPVDTAGRVL 231
Query: 137 ELTHMLEQLWRNK 149
EL +EQ W +
Sbjct: 232 ELLLTMEQYWAQR 244
>gi|302819854|ref|XP_002991596.1| hypothetical protein SELMODRAFT_429848 [Selaginella moellendorffii]
gi|300140629|gb|EFJ07350.1| hypothetical protein SELMODRAFT_429848 [Selaginella moellendorffii]
Length = 715
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 71/101 (70%), Gaps = 1/101 (0%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKI K+ E+I+Y VDFN +KERHLN VL+ F RP V+ITD +A+ Q RR
Sbjct: 154 LLGGTIWKITKD-TEDIIYAVDFNHRKERHLNATVLESFTRPAVLITDAYNALNSQPVRR 212
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
RD+ + IL+TLR++GNVL+ V+ +GRVLE+ L+Q W
Sbjct: 213 QRDQEFLDIILRTLRSSGNVLLPVEPSGRVLEIILYLDQHW 253
>gi|302776792|ref|XP_002971541.1| hypothetical protein SELMODRAFT_441578 [Selaginella moellendorffii]
gi|300160673|gb|EFJ27290.1| hypothetical protein SELMODRAFT_441578 [Selaginella moellendorffii]
Length = 721
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 71/101 (70%), Gaps = 1/101 (0%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKI K+ E+I+Y VDFN +KERHLN VL+ F RP V+ITD +A+ Q RR
Sbjct: 154 LLGGTIWKITKD-TEDIIYAVDFNHRKERHLNATVLESFTRPAVLITDAYNALNSQPVRR 212
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
RD+ + IL+TLR++GNVL+ V+ +GRVLE+ L+Q W
Sbjct: 213 QRDQEFLDIILRTLRSSGNVLLPVEPSGRVLEIILYLDQHW 253
>gi|115480769|ref|NP_001063978.1| Os09g0569400 [Oryza sativa Japonica Group]
gi|75253249|sp|Q652P4.1|CPSF2_ORYSJ RecName: Full=Cleavage and polyadenylation specificity factor
subunit 2; AltName: Full=Cleavage and polyadenylation
specificity factor 100 kDa subunit; Short=CPSF 100 kDa
subunit
gi|52077178|dbj|BAD46223.1| putative cleavage and polyadenylation specificity factor [Oryza
sativa Japonica Group]
gi|113632211|dbj|BAF25892.1| Os09g0569400 [Oryza sativa Japonica Group]
Length = 738
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 79/133 (59%), Gaps = 13/133 (9%)
Query: 27 TKIKYDEYGNHSSWAYGEEIFTGP----------IWKIVKEGEEEIVYGVDFNLKKERHL 76
++KY + NH GE I P +WKI K+GE+ +VY VDFN +KERHL
Sbjct: 127 VRLKYSQ--NHLLNDKGEGIVIAPHVAGHDLGGTVWKITKDGED-VVYAVDFNHRKERHL 183
Query: 77 NGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVL 136
NG L F+RP V+ITD +A+ +R +D+ + +++ L G+VL+ +DTAGRVL
Sbjct: 184 NGTALGSFVRPAVLITDAYNALNNHVYKRQQDQDFIDALVKVLTGGGSVLLPIDTAGRVL 243
Query: 137 ELTHMLEQLWRNK 149
E+ +LEQ W +
Sbjct: 244 EILLILEQYWAQR 256
>gi|440797154|gb|ELR18249.1| cleavage and polyadenylation specificity factor subunit 2, putative
[Acanthamoeba castellanii str. Neff]
Length = 799
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 74/115 (64%), Gaps = 4/115 (3%)
Query: 43 GEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQA 102
G + G +WKI KE EEI+Y VD+N KKERHLN VL+ RPT++ITD + + Q+
Sbjct: 115 GGHMIGGTVWKITKE-TEEILYAVDYNHKKERHLNPTVLETLNRPTLLITDAFNGLSTQS 173
Query: 103 RRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW---RNKDSGLV 154
RR+RD L+ ++TL+ +GNVL+ DTAGRVLEL +Q W R GLV
Sbjct: 174 SRRSRDMDLLDTTMKTLKGDGNVLLPTDTAGRVLELLLTFDQHWAYYRLSQYGLV 228
>gi|222642134|gb|EEE70266.1| hypothetical protein OsJ_30409 [Oryza sativa Japonica Group]
Length = 1073
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 79/133 (59%), Gaps = 13/133 (9%)
Query: 27 TKIKYDEYGNHSSWAYGEEIFTGP----------IWKIVKEGEEEIVYGVDFNLKKERHL 76
++KY + NH GE I P +WKI K+GE+ +VY VDFN +KERHL
Sbjct: 127 VRLKYSQ--NHLLNDKGEGIVIAPHVAGHDLGGTVWKITKDGED-VVYAVDFNHRKERHL 183
Query: 77 NGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVL 136
NG L F+RP V+ITD +A+ +R +D+ + +++ L G+VL+ +DTAGRVL
Sbjct: 184 NGTALGSFVRPAVLITDAYNALNNHVYKRQQDQDFIDALVKVLTGGGSVLLPIDTAGRVL 243
Query: 137 ELTHMLEQLWRNK 149
E+ +LEQ W +
Sbjct: 244 EILLILEQYWAQR 256
>gi|218202664|gb|EEC85091.1| hypothetical protein OsI_32459 [Oryza sativa Indica Group]
Length = 1195
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 79/133 (59%), Gaps = 13/133 (9%)
Query: 27 TKIKYDEYGNHSSWAYGEEIFTGP----------IWKIVKEGEEEIVYGVDFNLKKERHL 76
++KY + NH GE I P +WKI K+GE+ +VY VDFN +KERHL
Sbjct: 127 VRLKYSQ--NHLLNDKGEGIVIAPHVAGHDLGGTVWKITKDGED-VVYAVDFNHRKERHL 183
Query: 77 NGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVL 136
NG L F+RP V+ITD +A+ +R +D+ + +++ L G+VL+ +DTAGRVL
Sbjct: 184 NGTALGSFVRPAVLITDAYNALNNHVYKRQQDQDFIDALVKVLTGGGSVLLPIDTAGRVL 243
Query: 137 ELTHMLEQLWRNK 149
E+ +LEQ W +
Sbjct: 244 EILLILEQYWAQR 256
>gi|67968123|dbj|BAE00542.1| unnamed protein product [Macaca fascicularis]
Length = 592
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 59/68 (86%)
Query: 86 RPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQL 145
RP+++ITD+ +A Y Q RR+ RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+
Sbjct: 4 RPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQI 63
Query: 146 WRNKDSGL 153
WR KD+GL
Sbjct: 64 WRTKDAGL 71
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 253 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 287
>gi|325187176|emb|CCA21717.1| cleavage and polyadenylation specificity factor subunit putative
[Albugo laibachii Nc14]
gi|325187319|emb|CCA21858.1| cleavage and polyadenylation specificity factor subunit putative
[Albugo laibachii Nc14]
Length = 731
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 70/101 (69%), Gaps = 1/101 (0%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G +W+I+KE +EI+Y VD+N + E L VL F RPT++ITD++S +Q + +
Sbjct: 155 LIGGSMWRIMKE-TDEIIYAVDYNHRSEHVLPKSVLSSFTRPTLLITDSLSLHTKQPKLK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
RD ++M IL+TLR+ GNVL+ D+AGRVLEL +L+Q W
Sbjct: 214 DRDSKIMVEILKTLRSGGNVLLPTDSAGRVLELMRVLDQYW 254
>gi|226492345|ref|NP_001151557.1| LOC100285191 [Zea mays]
gi|195647682|gb|ACG43309.1| cleavage and polyadenylation specificity factor, 100 kDa subunit
[Zea mays]
Length = 673
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 71/101 (70%), Gaps = 1/101 (0%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G +WKI K+GE+ +VY VDFN +KERHLNG VL F+RP V+ITD +A+ Q R+
Sbjct: 90 LLGGTVWKITKDGED-VVYAVDFNHRKERHLNGTVLGSFVRPAVLITDAYNALNNQGYRK 148
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+D+ + ++++ L G+VL+ VDTAGRVLEL +L+ W
Sbjct: 149 KQDQDFIDSLIKVLATGGSVLLPVDTAGRVLELLLLLDMYW 189
>gi|242037469|ref|XP_002466129.1| hypothetical protein SORBIDRAFT_01g001930 [Sorghum bicolor]
gi|241919983|gb|EER93127.1| hypothetical protein SORBIDRAFT_01g001930 [Sorghum bicolor]
Length = 738
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G +WKI K+GE+ +VY VDFN +KERHLNG VL F+RP V+ITD +A+ Q R+
Sbjct: 154 LLGGTVWKITKDGED-VVYAVDFNHRKERHLNGTVLGSFVRPAVLITDAYNALNNQGYRK 212
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+D+ + ++++ L G+VL+ VDTAGRVLEL +L+ W +
Sbjct: 213 KQDQDFIDSLIKVLATGGSVLLPVDTAGRVLELLLLLDTYWDER 256
>gi|219886123|gb|ACL53436.1| unknown [Zea mays]
gi|414881946|tpg|DAA59077.1| TPA: cleavage and polyadenylation specificity factor, subunit
isoform 1 [Zea mays]
gi|414881947|tpg|DAA59078.1| TPA: cleavage and polyadenylation specificity factor, subunit
isoform 2 [Zea mays]
gi|414881948|tpg|DAA59079.1| TPA: cleavage and polyadenylation specificity factor, subunit
isoform 3 [Zea mays]
Length = 737
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G +WKI K+GE+ +VY VDFN +KERHLNG VL F+RP V+ITD +A+ Q R+
Sbjct: 154 LLGGTVWKITKDGED-VVYAVDFNHRKERHLNGTVLGSFVRPAVLITDAYNALNNQGYRK 212
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+D+ + ++++ L G+VL+ VDTAGRVLEL +L+ W +
Sbjct: 213 KQDQDFIESLIKVLATGGSVLLPVDTAGRVLELLLLLDMYWDER 256
>gi|414881945|tpg|DAA59076.1| TPA: hypothetical protein ZEAMMB73_548570 [Zea mays]
Length = 309
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 72/105 (68%), Gaps = 1/105 (0%)
Query: 45 EIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARR 104
+ G +WKI K+GE+ +VY VDFN +KERHLNG VL F+RP V+ITD +A+ Q R
Sbjct: 153 HLLGGTVWKITKDGED-VVYAVDFNHRKERHLNGTVLGSFVRPAVLITDAYNALNNQGYR 211
Query: 105 RTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+ +D+ + ++++ L G+VL+ VDTAGRVLEL +L+ W +
Sbjct: 212 KKQDQDFIESLIKVLATGGSVLLPVDTAGRVLELLLLLDMYWDER 256
>gi|414881949|tpg|DAA59080.1| TPA: hypothetical protein ZEAMMB73_548570 [Zea mays]
Length = 766
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G +WKI K+GE+ +VY VDFN +KERHLNG VL F+RP V+ITD +A+ Q R+
Sbjct: 154 LLGGTVWKITKDGED-VVYAVDFNHRKERHLNGTVLGSFVRPAVLITDAYNALNNQGYRK 212
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+D+ + ++++ L G+VL+ VDTAGRVLEL +L+ W +
Sbjct: 213 KQDQDFIESLIKVLATGGSVLLPVDTAGRVLELLLLLDMYWDER 256
>gi|449662070|ref|XP_004205466.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like, partial [Hydra magnipapillata]
Length = 568
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 60/79 (75%)
Query: 75 HLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGR 134
HLNG VL+ RP ++ITD+ +A+ Q RR+ RD +LM +IL LR +GNVL+AVDTAGR
Sbjct: 1 HLNGAVLETLSRPALLITDSYAALCNQERRKERDIQLMNSILSALRQDGNVLLAVDTAGR 60
Query: 135 VLELTHMLEQLWRNKDSGL 153
+LEL +L+Q+W K+SGL
Sbjct: 61 ILELMQLLDQMWSAKESGL 79
>gi|328768987|gb|EGF79032.1| hypothetical protein BATDEDRAFT_12823 [Batrachochytrium
dendrobatidis JAM81]
Length = 719
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 74/113 (65%), Gaps = 6/113 (5%)
Query: 38 SSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVL---DRFIRPTVVITDT 94
S+++ G I G IWKI K+ EEIVY VD+N +KERHLNG VL D IRPT++ITD
Sbjct: 147 SAFSAGHTI-GGTIWKI-KKDTEEIVYAVDYNHRKERHLNGTVLLSTDTLIRPTLLITDA 204
Query: 95 MSAIYQQ-ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + A R+ RD L+ +I L +GNVL+ D++ RVLEL +ML+Q W
Sbjct: 205 FNTLMPDPAPRKQRDAALIESIATVLSEHGNVLIPSDSSTRVLELLYMLDQHW 257
>gi|428169733|gb|EKX38664.1| hypothetical protein GUITHDRAFT_89302 [Guillardia theta CCMP2712]
Length = 770
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 72/105 (68%), Gaps = 3/105 (2%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQ--AR 103
+ G +WKI KE EE IVY VD+N ++RHL+G VL RP ++ITD +A+ +
Sbjct: 154 MIGGALWKITKESEE-IVYAVDYNHAQDRHLDGTVLVDLPRPNILITDAYTALDKNTLGG 212
Query: 104 RRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
++ R++RL+ +++ +R +GNVL+ VD+ GRVLEL +L++LW+
Sbjct: 213 KKAREQRLIEHVMSAIRQDGNVLIPVDSTGRVLELLIVLDELWQQ 257
>gi|145340766|ref|XP_001415490.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575713|gb|ABO93782.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 715
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 75/114 (65%), Gaps = 2/114 (1%)
Query: 39 SWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAI 98
++A G + G +WKI K+ E+ +VY VD+N++KERHLNG D RP ++ITD S
Sbjct: 131 AYAAGHTL-GGAVWKIGKDAED-VVYAVDYNVRKERHLNGTSFDAIHRPALLITDASSVD 188
Query: 99 YQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSG 152
+ + TRD +L+ +IL +LR NGNVL+ +D AGRVLEL +LE+ W + G
Sbjct: 189 REVPNKTTRDAKLIDSILSSLRMNGNVLIPIDPAGRVLELILLLEEKWAQRQLG 242
>gi|308799055|ref|XP_003074308.1| polyadenylation cleavage/specificity factor 100 kDa subunit (ISS)
[Ostreococcus tauri]
gi|116000479|emb|CAL50159.1| polyadenylation cleavage/specificity factor 100 kDa subunit (ISS)
[Ostreococcus tauri]
Length = 807
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 78/116 (67%), Gaps = 5/116 (4%)
Query: 39 SWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAI 98
++A G + G +WKI K+ E+ I+Y VD+N++KERHLNG D RP ++ITD S++
Sbjct: 176 AYAAGHTL-GGAMWKIGKDAED-IIYAVDYNVRKERHLNGATFDSIHRPALLITDA-SSV 232
Query: 99 YQQARRRT--RDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSG 152
++ + T RD +L+ IL +LR NGNVL+ +D AGRVLEL +LE+ W+ + G
Sbjct: 233 EREVPKSTVPRDTKLVDTILSSLRMNGNVLIPIDPAGRVLELILLLEEKWQQRQLG 288
>gi|7243115|dbj|BAA92605.1| KIAA1367 protein [Homo sapiens]
Length = 579
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 50/58 (86%)
Query: 96 SAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
+A Y Q RR+ RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 1 NATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 58
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 240 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 274
>gi|384251490|gb|EIE24968.1| hypothetical protein COCSUDRAFT_83661 [Coccomyxa subellipsoidea
C-169]
Length = 731
Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 45/92 (48%), Positives = 59/92 (64%), Gaps = 3/92 (3%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR-FIRPTVVITDTMSAIYQQA-- 102
+ G IW+I EE IVY V +N KKERHLNG VLD F RP ++ITD +++ + A
Sbjct: 152 LLGGCIWRITTPEEEHIVYAVHYNHKKERHLNGGVLDSAFSRPAILITDADNSMLEGAVR 211
Query: 103 RRRTRDERLMTNILQTLRNNGNVLVAVDTAGR 134
R T D+ L ++ T+R NGNVL+ VD AGR
Sbjct: 212 SRETLDKELREAVMATVRANGNVLIPVDAAGR 243
>gi|326436560|gb|EGD82130.1| hypothetical protein PTSG_02804 [Salpingoeca sp. ATCC 50818]
Length = 630
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 71/125 (56%), Gaps = 7/125 (5%)
Query: 27 TKIKYDEYGNH-----SSWAY-GEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCV 80
T+IKY + N S AY + G +W+I K+GE +VY VD+N ++E HLN
Sbjct: 44 TRIKYSQTVNLPGVGISITAYPAGHMIGGSVWRITKDGEN-VVYAVDYNHRREWHLNSTS 102
Query: 81 LDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTH 140
LD P ++ITDT++ Y +RR +L+ + ++L NVLV DTAGR EL
Sbjct: 103 LDILTWPAILITDTLNVAYTSPKRREVLGQLLAAVRESLNKQANVLVLADTAGRSFELLQ 162
Query: 141 MLEQL 145
+L+QL
Sbjct: 163 VLDQL 167
>gi|320163729|gb|EFW40628.1| cleavage and polyadenylation specificity factor [Capsaspora
owczarzaki ATCC 30864]
Length = 744
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 10/107 (9%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLD---RFIRPTVVITDTMSAIYQQARRR 105
G IW+I+ EGE+ IVY VDFN + ERHLN L ++ RP+++I+++ + + R+
Sbjct: 69 GTIWRIITEGED-IVYAVDFNHQLERHLNPTELKDLFQYERPSILISNSFNYGAESVPRK 127
Query: 106 TRDERLMTNILQTLRN------NGNVLVAVDTAGRVLELTHMLEQLW 146
TRD + +I+ TL N G+VL+ DTAGRVLEL +L++ W
Sbjct: 128 TRDRLFLDSIVNTLINPKDGSAGGSVLIPTDTAGRVLELAQVLDKQW 174
>gi|384484008|gb|EIE76188.1| hypothetical protein RO3G_00892 [Rhizopus delemar RA 99-880]
Length = 657
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 63/105 (60%), Gaps = 8/105 (7%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNG-------CVLDRFIRPTVVITDTMSAIYQQ 101
G IWKI K+ +EIVY VDFN +KE HL+G VLD RP+++ITD ++
Sbjct: 109 GTIWKI-KQDTDEIVYAVDFNHRKEYHLDGTVLHSGGVVLDSLTRPSLLITDAYNSQVVH 167
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
R+ R + +L +L G+VL+ D++ RVLEL ++L+Q W
Sbjct: 168 PARKDRYAAMFDTMLTSLNKGGSVLLPTDSSARVLELAYLLDQHW 212
>gi|255070137|ref|XP_002507150.1| predicted protein [Micromonas sp. RCC299]
gi|255070139|ref|XP_002507151.1| predicted protein [Micromonas sp. RCC299]
gi|226522425|gb|ACO68408.1| predicted protein [Micromonas sp. RCC299]
gi|226522426|gb|ACO68409.1| predicted protein [Micromonas sp. RCC299]
Length = 808
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 75/112 (66%), Gaps = 3/112 (2%)
Query: 38 SSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSA 97
+ +A G + G +WK+ KE +++VY V+FN ++E+HLNG VL+ RP V+ITD +A
Sbjct: 152 TPYAAGH-MLGGALWKVHKE-TDDVVYAVNFNHRREKHLNGTVLESIKRPAVLITDASNA 209
Query: 98 IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+ +TR+ L+ IL+T+R +GNVL+ +D AGRVLEL +LE+ W K
Sbjct: 210 -RRLPPSKTRENDLIEAILRTVRQDGNVLIPIDPAGRVLELLLVLEERWSQK 260
>gi|213407230|ref|XP_002174386.1| cleavage factor two Cft2/polyadenylation factor CPSF-73
[Schizosaccharomyces japonicus yFS275]
gi|212002433|gb|EEB08093.1| cleavage factor two Cft2/polyadenylation factor CPSF-73
[Schizosaccharomyces japonicus yFS275]
Length = 786
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 8/112 (7%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC-------VLDRFIRPTVVITDTMSAIYQQ 101
G +W I KE E +VY VD+N K++HLNG +L+ RP ++TD +A+
Sbjct: 143 GTLWSITKESES-LVYAVDWNHSKDKHLNGTALYSNGQILEILTRPNTLVTDANNALISI 201
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
R+ RDE L+ ++ TL G+VL+ +D A RV+EL + L+ W + L
Sbjct: 202 PARKKRDEALIEAVMSTLLKGGSVLLPMDAASRVIELCYFLDTHWASSQPPL 253
>gi|290981012|ref|XP_002673225.1| predicted protein [Naegleria gruberi]
gi|284086807|gb|EFC40481.1| predicted protein [Naegleria gruberi]
Length = 808
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 7/105 (6%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFI-RPTVVITDTMSAIYQQARR--- 104
G IWK+ KE +E IVY +DFN+K ERHLNG VL +P ++ITD + +
Sbjct: 197 GTIWKLTKETDE-IVYAIDFNIKTERHLNGSVLGELGGKPALLITDAYNVKPIPSSDLGG 255
Query: 105 --RTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
+ ++M +I TL GNVLV ++TAGRV EL +LE+ W+
Sbjct: 256 VDKAPAIKIMKSITDTLTGGGNVLVPIETAGRVFELMLLLEERWK 300
>gi|430813604|emb|CCJ29043.1| unnamed protein product [Pneumocystis jirovecii]
gi|430813606|emb|CCJ29045.1| unnamed protein product [Pneumocystis jirovecii]
Length = 772
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVL-------DRFIRPTVVITDTMSAIYQQ 101
G IWKI K+ E IVY V++N K+ HLNG +L D IRPT++ITD +++
Sbjct: 144 GTIWKITKDSEN-IVYCVNWNHSKDSHLNGSILYSNGTILDALIRPTILITDAINSNISI 202
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
R+ R E +I TL GNVL+ D A R LE +L++ W+
Sbjct: 203 PSRKKRTEAFFDSIKNTLAQQGNVLIPTDAATRSLEFCWILDRYWK 248
>gi|328866931|gb|EGG15314.1| beta-lactamase domain-containing protein [Dictyostelium
fasciculatum]
Length = 768
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 63/104 (60%), Gaps = 7/104 (6%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHL-----NGCVLDRFIRPTVVITDTMSAIYQQAR 103
G +W+I KE + IVY VD N ++E HL NG + +PT +ITD + + +
Sbjct: 159 GSVWRIAKESDV-IVYAVDINHRRESHLEGFLQNGLLSPELAKPTHLITDALHILDPPPQ 217
Query: 104 RRT-RDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
++ +D ++ + ++LR+ GN+LVA DTAGRVLEL ++Q W
Sbjct: 218 KKADKDTAMLAQLRKSLRDGGNILVATDTAGRVLELLLTIDQYW 261
>gi|19112240|ref|NP_595448.1| cleavage factor two Cft2/polyadenylation factor CPSF-73 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|74582548|sp|O74740.1|CFT2_SCHPO RecName: Full=Cleavage factor two protein 2
gi|3738153|emb|CAA21254.1| cleavage factor two Cft2/polyadenylation factor CPSF-73 (predicted)
[Schizosaccharomyces pombe]
Length = 797
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 61/105 (58%), Gaps = 8/105 (7%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC-------VLDRFIRPTVVITDTMSAIYQQ 101
G +W ++KE E ++Y VD+N K++HLNG +L+ RP +ITD +++
Sbjct: 143 GTLWSLIKESES-VLYAVDWNHSKDKHLNGAALYSNGHILEALNRPNTLITDANNSLVSI 201
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
R+ RDE + +++ +L G VL+ VD A RVLEL +L+ W
Sbjct: 202 PSRKKRDEAFIESVMSSLLKGGTVLLPVDAASRVLELCCILDNHW 246
>gi|281208327|gb|EFA82503.1| beta-lactamase domain-containing protein [Polysphondylium pallidum
PN500]
Length = 738
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 63/107 (58%), Gaps = 7/107 (6%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNG--CVLD--RFIRPTVVITDTMSAIYQQA-- 102
G +WKI KE + I+Y +DFN +KE HL G VL ++PT +ITD A
Sbjct: 161 GSVWKITKETDT-IIYAIDFNHRKEGHLEGFFPVLQGQDLLKPTHLITDARHARTPPTAL 219
Query: 103 RRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+R +D+ L + +L+TLR GNVL+ VDTAGR LEL +E W +
Sbjct: 220 KRIEKDKALYSTLLKTLREGGNVLLPVDTAGRSLELLQSIESHWAQQ 266
>gi|66826811|ref|XP_646760.1| beta-lactamase domain-containing protein [Dictyostelium discoideum
AX4]
gi|74858209|sp|Q55BS1.1|CPSF2_DICDI RecName: Full=Cleavage and polyadenylation specificity factor
subunit 2; AltName: Full=Cleavage and polyadenylation
specificity factor 100 kDa subunit; Short=CPSF 100 kDa
subunit
gi|60474609|gb|EAL72546.1| beta-lactamase domain-containing protein [Dictyostelium discoideum
AX4]
Length = 784
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 65/109 (59%), Gaps = 5/109 (4%)
Query: 51 IWKIVKEGEEEIVYGVDFNLKKERHLNGCVL-DRFIRPTVVITDTMSAIYQQARRRT--R 107
+WKI K G IVY +D+N + E HL+ L ++P+++ITD+ A ++T R
Sbjct: 161 VWKITK-GTYSIVYAIDYNHRNEGHLDSLQLTSDILKPSLLITDSKGVDKTLAFKKTITR 219
Query: 108 DERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW-RNKDSGLVS 155
D+ L I + LR+ GNVL+ VDTAGRVLEL +E W +NK L S
Sbjct: 220 DQSLFEQINRNLRDGGNVLIPVDTAGRVLELLLCIENYWSKNKSLALYS 268
>gi|167535876|ref|XP_001749611.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772003|gb|EDQ85662.1| predicted protein [Monosiga brevicollis MX1]
Length = 770
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 67/109 (61%), Gaps = 3/109 (2%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQA-RR 104
+ G +W+I K+ +E++VY +++N + ERHL V RP+++IT +A + +
Sbjct: 152 MLGGTVWRITKD-DEDVVYALNYNHRSERHLRPAVFQLLTRPSLLITGARNASTEMVLKP 210
Query: 105 RTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
+ R+ +L++ QT+R++G ++V DTAGR LEL + E W N + GL
Sbjct: 211 KEREAKLLSLAEQTMRSDGTMVVVADTAGRTLELVQLFESHW-NDNPGL 258
>gi|260822471|ref|XP_002606625.1| hypothetical protein BRAFLDRAFT_209615 [Branchiostoma floridae]
gi|229291969|gb|EEN62635.1| hypothetical protein BRAFLDRAFT_209615 [Branchiostoma floridae]
Length = 607
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Query: 75 HLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGR 134
+LN L R +R +++ + Y Q RR+ RDE+L+T I T+R++GNVLV++DTAGR
Sbjct: 1 YLNYVQLRRKLRDEQLLSKSYLN-YVQLRRKLRDEQLLTEIFNTVRDDGNVLVSIDTAGR 59
Query: 135 VLELTHMLEQLWRNKDSGL 153
VLEL+ +LEQ W+N ++GL
Sbjct: 60 VLELSQLLEQYWQNAETGL 78
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 11 FFKSNKKQFPMFPFHETKIKYDEYG 35
FFK KK +PMFP E ++K+D+YG
Sbjct: 275 FFKQAKKAYPMFPAPEERVKWDDYG 299
>gi|350646480|emb|CCD58879.1| cleavage and polyadenylation specificity factor,putative
[Schistosoma mansoni]
Length = 729
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 46/63 (73%)
Query: 93 DTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSG 152
D + +Y Q RR+ RDE L +L++LR GNVL+AVDTAGR LE+ H LEQ W N++SG
Sbjct: 2 DGSNTLYTQPRRKDRDENLRQTVLKSLRRGGNVLIAVDTAGRCLEVAHFLEQCWLNQESG 61
Query: 153 LVS 155
L++
Sbjct: 62 LMA 64
>gi|256077072|ref|XP_002574832.1| cleavage and polyadenylation specificity factor [Schistosoma
mansoni]
Length = 1063
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 46/63 (73%)
Query: 93 DTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSG 152
D + +Y Q RR+ RDE L +L++LR GNVL+AVDTAGR LE+ H LEQ W N++SG
Sbjct: 2 DGSNTLYTQPRRKDRDENLRQTVLKSLRRGGNVLIAVDTAGRCLEVAHFLEQCWLNQESG 61
Query: 153 LVS 155
L++
Sbjct: 62 LMA 64
>gi|302833565|ref|XP_002948346.1| hypothetical protein VOLCADRAFT_31342 [Volvox carteri f.
nagariensis]
gi|300266566|gb|EFJ50753.1| hypothetical protein VOLCADRAFT_31342 [Volvox carteri f.
nagariensis]
Length = 375
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 59/99 (59%), Gaps = 3/99 (3%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFI---RPTVVITDTMSAIYQQARRR 105
G +W+I EE+VY VD+N +KER LN LD + +P ++I+D ++ + + R
Sbjct: 167 GAVWRISLGCGEEVVYAVDYNHRKERLLNRTNLDELLSSQQPALLISDCLNGLTENTDRH 226
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQ 144
RDE + I T+ G+VL+ D AGRVLEL +L++
Sbjct: 227 RRDEEFLDAITATVEAEGSVLIPTDAAGRVLELALLLDE 265
>gi|298708373|emb|CBJ48436.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 997
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 10/119 (8%)
Query: 38 SSWAYGEEIFTGPIWKIVKEGEE-EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMS 96
+ +A G I +W++ + E+ +IVY +N ERHL L RP+V+ITD +
Sbjct: 273 TPYAAGRMIGAA-VWRVSWQTEDNDIVYATAYNNDHERHLRASALGTLTRPSVLITDAHN 331
Query: 97 AIY--------QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
A+ ++R+ R+ L++ ++ T+R GNVL+ DTAGRVLEL +L W+
Sbjct: 332 ALTGGGMIRKDPSSKRKLREVELISTVMDTVRGGGNVLLPTDTAGRVLELLVLLNDYWQ 390
>gi|170090732|ref|XP_001876588.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648081|gb|EDR12324.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 901
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 58/107 (54%), Gaps = 9/107 (8%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVL---------DRFIRPTVVITDTMSAIY 99
G IWKI IVY V+ N +ERHL+G VL D RP ++ITD A
Sbjct: 210 GTIWKIRSPSSGTIVYAVNVNHMRERHLDGTVLIRQAAGGIFDPLARPDLLITDAERASV 269
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+RR+ RD L+ I TL + ++L+ D++ RVLEL +L+Q W
Sbjct: 270 TTSRRKDRDAALIDTISATLGSRSSLLLPCDSSTRVLELLVLLDQHW 316
>gi|392568293|gb|EIW61467.1| hypothetical protein TRAVEDRAFT_162694 [Trametes versicolor
FP-101664 SS1]
Length = 943
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 58/108 (53%), Gaps = 10/108 (9%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR----------FIRPTVVITDTMSAI 98
G IWKI I+Y VD N +ERHL+G VL R RP ++ITD A
Sbjct: 213 GTIWKIRSPSAGTILYAVDMNHMRERHLDGTVLIRQGSTGGVFESLARPDLLITDAERAN 272
Query: 99 YQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
ARR+ RD L+ + TL + ++L+ D++ RVLEL +L+Q W
Sbjct: 273 VTTARRKDRDSALLDCVTATLSSRNSLLLPCDSSTRVLELLVLLDQHW 320
>gi|409049761|gb|EKM59238.1| hypothetical protein PHACADRAFT_249539 [Phanerochaete carnosa
HHB-10118-sp]
Length = 951
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR-----------FIRPTVVITDTMSA 97
G IWKI I+Y VD N +ERHL+G VL R +RP ++ITD A
Sbjct: 215 GTIWKIRSPTAGTILYAVDMNHMRERHLDGTVLMRQGSSNTGIFETLVRPDLLITDAERA 274
Query: 98 IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
ARR+ RD L+ + TL + ++L+ D + RVLEL +L+Q W
Sbjct: 275 NVTTARRKDRDAALLDCVTATLTSRNSLLLPCDASTRVLELLVLLDQHW 323
>gi|164663111|ref|XP_001732677.1| hypothetical protein MGL_0452 [Malassezia globosa CBS 7966]
gi|159106580|gb|EDP45463.1| hypothetical protein MGL_0452 [Malassezia globosa CBS 7966]
Length = 862
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/108 (36%), Positives = 60/108 (55%), Gaps = 10/108 (9%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVL----------DRFIRPTVVITDTMSAI 98
G +WK+ IV +D+N +ERHL+G L RP V+ITD +
Sbjct: 205 GTVWKLRSPTVGTIVMALDWNHHRERHLDGTALLSVGAAAPLAHAIGRPDVLITDIERGL 264
Query: 99 YQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ ARR+ RD L++ I +TL + +VL+ VD+A R+LE+ +L+Q W
Sbjct: 265 FTNARRKDRDAALLSQIHRTLTSGHSVLIPVDSAARLLEILVLLDQHW 312
>gi|422293869|gb|EKU21169.1| cleavage and polyadenylation specificity factor subunit 2
[Nannochloropsis gaditana CCMP526]
Length = 925
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/110 (38%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCV-------LDRFIRPTVVITDTMSAI 98
I G W++ + EEIVY VDFNLK ERHL G V D+ RP + ITD +
Sbjct: 217 ILGGCFWRVNYKKMEEIVYAVDFNLKSERHLTGAVEAFNALSADKEQRPCLFITDARPSP 276
Query: 99 YQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R + + TLR G+VL+ V+T+GR EL L WR+
Sbjct: 277 NLSTDERKVETEFLAAATGTLRKGGHVLIPVETSGRAQELLLALNGHWRS 326
>gi|395330425|gb|EJF62808.1| hypothetical protein DICSQDRAFT_135076 [Dichomitus squalens
LYAD-421 SS1]
Length = 943
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR-----------FIRPTVVITDTMSA 97
G IWKI I+Y VD N +ERHL+G VL R RP ++ITD A
Sbjct: 211 GTIWKIRSPSAGTILYAVDMNHMRERHLDGTVLIRQASAGGGVFESLARPDLLITDAERA 270
Query: 98 IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
ARR+ RD L+ + TL + ++L+ D + RVLEL +L+Q W
Sbjct: 271 NVTTARRKDRDAALLDCVTATLSSRNSLLLPCDASTRVLELLVLLDQHW 319
>gi|169861678|ref|XP_001837473.1| cleavage and polyadenylation specificity factor subunit
[Coprinopsis cinerea okayama7#130]
gi|116501494|gb|EAU84389.1| cleavage and polyadenylation specificity factor subunit
[Coprinopsis cinerea okayama7#130]
Length = 926
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 10/108 (9%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVL----------DRFIRPTVVITDTMSAI 98
G IWKI I+Y V+ N KERHL+G V+ + +RP ++ITD A
Sbjct: 215 GTIWKIRSPSSGTILYAVNLNHMKERHLDGTVMMVRPGGSGVFESLVRPDLLITDAERAS 274
Query: 99 YQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+RR+ RD L+ I TL + ++L+ D++ R+LEL +L+Q W
Sbjct: 275 VITSRRKDRDAALIDTITATLTSRSSLLLPCDSSTRILELLVLLDQHW 322
>gi|403418874|emb|CCM05574.1| predicted protein [Fibroporia radiculosa]
Length = 826
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR-----------FIRPTVVITDTMSA 97
G IWKI I+Y VD N +ERHL+G VL R RP ++ITD A
Sbjct: 100 GTIWKIRSPTAGTILYAVDMNHTRERHLDGTVLVRQASAGGGIFESLARPDLLITDAERA 159
Query: 98 IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
ARR+ RD L+ + TL + ++L+ D + RVLEL +L+Q W
Sbjct: 160 NVTTARRKDRDAALLDCVTATLTSRNSLLLPCDASTRVLELLVLLDQHW 208
>gi|422294077|gb|EKU21377.1| cleavage and polyadenylation specificity factor subunit 2, partial
[Nannochloropsis gaditana CCMP526]
Length = 429
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCV-------LDRFIRPTVVITDTMSAI 98
I G W++ + EEIVY VDFNLK ERHL G V D+ RP + ITD +
Sbjct: 174 ILGGCFWRVNYKKMEEIVYAVDFNLKSERHLTGAVEAFNALSADKEQRPCLFITDARPSP 233
Query: 99 YQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R + + TLR G+VL+ V+T+GR EL L WR+
Sbjct: 234 NLSTDERKVETEFLAAATGTLRKGGHVLIPVETSGRAQELLLALNGHWRS 283
>gi|330803886|ref|XP_003289932.1| hypothetical protein DICPUDRAFT_80682 [Dictyostelium purpureum]
gi|325079974|gb|EGC33550.1| hypothetical protein DICPUDRAFT_80682 [Dictyostelium purpureum]
Length = 752
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 4/99 (4%)
Query: 51 IWKIVKEGEEEIVYGVDFNLKKERHLNGCVL-DRFIRPTVVITDTMSAIYQQARRR--TR 107
+W+I K G I+Y +DFN + E HL+ L ++P+++ITD+ ++ TR
Sbjct: 161 VWRITK-GTYSIIYALDFNHRNEGHLDSLQLTSDILKPSLLITDSKGVDRTLPYKKIATR 219
Query: 108 DERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
D+ L+ I +LR GNVL+ VDTAGRVLEL +E W
Sbjct: 220 DQALLEKIHNSLRAGGNVLLPVDTAGRVLELLLCIENYW 258
>gi|443926973|gb|ELU45512.1| cleavage and polyadenylation specificity factor subunit
[Rhizoctonia solani AG-1 IA]
Length = 854
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVL----------DRFIRPTVVITDTMSAI 98
G IWKI +VY V+ N KERHL+G VL + RP ++ITD +
Sbjct: 200 GTIWKIRSPSAGTVVYAVNLNHTKERHLDGTVLLKGGAGGGVLESLSRPDLLITDAERTL 259
Query: 99 YQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
ARR+ RD L+ + L++ +VL+ D + R+LEL + +Q W
Sbjct: 260 VVSARRKDRDAALLDAVTNVLQSGHSVLMPCDASTRILELLVLFDQHW 307
>gi|412994069|emb|CCO14580.1| predicted protein [Bathycoccus prasinos]
Length = 1092
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 4/107 (3%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFI-RPTVVITDTMSAIYQ--QARRR 105
G W+I K+ E+ IVY VD+N++KERHL G L + RP+V+ITD + + ++R +
Sbjct: 358 GSCWRISKDAED-IVYAVDYNMRKERHLAGTSLAETVHRPSVLITDCRNVDRKAPESRLQ 416
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSG 152
RD L+ +L+ R GNV++ D GR LEL +LE+ W+N++ G
Sbjct: 417 VRDLPLVDCVLKHARMEGNVVICCDAVGRTLELALLLEETWKNQNLG 463
>gi|452822529|gb|EME29547.1| cleavage and polyadenylation specificity factor subunit 2
[Galdieria sulphuraria]
Length = 747
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 64/150 (42%), Gaps = 26/150 (17%)
Query: 28 KIKYDEYGNHSSWAYGEEIFTGP--------IWKIVKEGEEEIVYGVDFNLKKERHLNGC 79
++KY + N S G I P +WKI E EEIVY DFN K+ERHLN
Sbjct: 129 QLKYQQIVNFSERGKGITITPHPAGHMIGGTVWKIQSE-TEEIVYANDFNHKRERHLNPT 187
Query: 80 VLDRFIRPTVVITDTMSAIY-----------------QQARRRTRDERLMTNILQTLRNN 122
L RP+ +I A+ Q R + L TLR
Sbjct: 188 TLQYLTRPSHLIISASQALVRPSSSSSISGQQFPKGSQIYSRSNPLTEICEEALSTLRQG 247
Query: 123 GNVLVAVDTAGRVLELTHMLEQLWRNKDSG 152
G+V++ VDTAGRVLEL E W + G
Sbjct: 248 GDVVIPVDTAGRVLELALGFEDFWATEKLG 277
>gi|353237084|emb|CCA69065.1| hypothetical protein PIIN_02923 [Piriformospora indica DSM 11827]
Length = 887
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 60/107 (56%), Gaps = 9/107 (8%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVL---------DRFIRPTVVITDTMSAIY 99
G IWKI IVY V+ N KERHL+G VL + RP V+ITD A+
Sbjct: 197 GTIWKIRSSLAGTIVYAVNLNHLKERHLDGSVLTLSTGGNVFEPLARPEVLITDAERALT 256
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
++R+ RD L+ I +T+ + ++L+ VD++ R+LEL + +Q W
Sbjct: 257 IGSKRKDRDRALLDLITETIESGHSLLLPVDSSTRLLELLVLTDQHW 303
>gi|296424981|ref|XP_002842022.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638279|emb|CAZ86213.1| unnamed protein product [Tuber melanosporum]
Length = 975
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 66/120 (55%), Gaps = 13/120 (10%)
Query: 47 FTGPIWKIVKEGEEEIVYGVDFNLKKERHL--------NGCVLDRFIRPTVVITDTMSA- 97
G IWKI ++ +E IVY VD+N +E L G ++ +PT +I ++
Sbjct: 173 LGGTIWKI-QQAQESIVYAVDWNHSRENCLRGAGFLSGGGVSVETLGKPTALICSARNSE 231
Query: 98 -IYQQARRRTRDERLMTNILQT-LRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
+ R+ RDE L+ I +T L+N+G VL+ D+ GRVLEL ++LE WR KD L S
Sbjct: 232 VVSMAGGRKKRDEMLLDAIKKTALKNSGTVLIPTDSVGRVLELVYLLEHAWR-KDQELSS 290
>gi|402226056|gb|EJU06116.1| hypothetical protein DACRYDRAFT_73414 [Dacryopinax sp. DJM-731 SS1]
Length = 925
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 9/107 (8%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR---------FIRPTVVITDTMSAIY 99
G +WK+ ++Y V N KE+HL+G L R RP ++ITD
Sbjct: 205 GTLWKLRSASSGTLLYAVGLNHMKEQHLDGTALVRPGGGGVGEGLGRPDLLITDAGRVGI 264
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
RRR R+E + +I TLR++G+VL+ VD + R++EL +L+Q W
Sbjct: 265 ISVRRREREEAFLESITNTLRSSGSVLIPVDASTRLVELLIILDQHW 311
>gi|388579716|gb|EIM20037.1| hypothetical protein WALSEDRAFT_61199 [Wallemia sebi CBS 633.66]
Length = 844
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 15/142 (10%)
Query: 24 FHETKIKYDEYGNHSSWAYGE-EIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVL- 81
+H+ + Y + + AY G +WKI I+Y V N KERHL+G L
Sbjct: 152 YHQPQHLYGKLRGVTITAYSSGHTLGGTLWKIRAPSVGTILYAVGINHMKERHLDGTALI 211
Query: 82 ----------DRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDT 131
++ +RP +VITD+ A+R+ RD L+ I +TL++ ++L+ D
Sbjct: 212 RGDQGGLTVHEQLVRPGLVITDSERGDCVNAKRKDRDAALLDIINRTLQSGNSLLLPCDP 271
Query: 132 AGRVLELTHMLEQLW---RNKD 150
R+LEL +L+Q W R+KD
Sbjct: 272 TSRILELLVLLDQHWTYIRDKD 293
>gi|449018596|dbj|BAM81998.1| cleavage and polyadenylation specific factor 2, 100kD subunit
[Cyanidioschyzon merolae strain 10D]
Length = 884
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 5/103 (4%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVL--DRFIRPTVVITDTMSAIYQQAR 103
+ G IWK KE EEIVY VD N ++ER LNGC +P+ +I + ++
Sbjct: 155 LLGGAIWKFQKE-SEEIVYCVDVNHRRERLLNGCASTPQLITKPSHLIVGASGVLTAPSQ 213
Query: 104 RRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
++ D L +++TLR G+VL+ VD+AGR LEL ++ W
Sbjct: 214 KKETD--LWEAVVETLRGGGDVLMPVDSAGRCLELLVAADEFW 254
>gi|432115811|gb|ELK36959.1| Cleavage and polyadenylation specificity factor subunit 2 [Myotis
davidii]
Length = 687
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 37/43 (86%)
Query: 111 LMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
L N+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 137 LKANVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 179
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 371 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 405
>gi|336373839|gb|EGO02177.1| hypothetical protein SERLA73DRAFT_86401 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386654|gb|EGO27800.1| hypothetical protein SERLADRAFT_447017 [Serpula lacrymans var.
lacrymans S7.9]
Length = 930
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 60/111 (54%), Gaps = 9/111 (8%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR---------FIRPTVVITDTMSAIY 99
G IWKI I+Y VD N +ERHL+G VL R RP ++ITD A
Sbjct: 210 GTIWKIRSPSAGTILYAVDINHMRERHLDGTVLVRPASGGIVEALARPDLLITDAERANV 269
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD 150
+RR+ RD L+ I TL + ++L+ D++ RVLEL +L+Q W+ D
Sbjct: 270 TTSRRKDRDAALIDTISATLSSRSSLLLPCDSSTRVLELLVLLDQHWKFAD 320
>gi|407929750|gb|EKG22561.1| RNA-metabolising metallo-beta-lactamase [Macrophomina phaseolina
MS6]
Length = 974
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 15/113 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E L+G V+++ RPT ++ +
Sbjct: 189 GTIWHI-QHGLESIVYAVDWNQAREHVLSGAAWLGGSGAGGAEVIEQLRRPTAMVCSSRG 247
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
A I R+ RDE L+ I +T+ N G+VL+ D++ RVLEL ++LE W+
Sbjct: 248 AERIALAGGRQKRDELLLEMIKETVCNGGSVLIPSDSSARVLELAYLLENAWQ 300
>gi|171679503|ref|XP_001904698.1| hypothetical protein [Podospora anserina S mat+]
gi|170939377|emb|CAP64605.1| unnamed protein product [Podospora anserina S mat+]
Length = 967
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 16/115 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC--------------VLDRFIRPTVVITDT 94
G IW I + G E IVY VD+N KE +G V+++ +PT ++ +
Sbjct: 188 GAIWHI-QHGLESIVYAVDWNQGKENVFSGAAWLSGGHGGGGSTEVIEQLRKPTALVCSS 246
Query: 95 MSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+ +R + RDE+L+ +I + G VL+ VD++ RVLEL+++LE WRN+
Sbjct: 247 RTPDATLSRAK-RDEQLLESIKLCIARGGTVLIPVDSSARVLELSYLLEHAWRNE 300
>gi|344253621|gb|EGW09725.1| Sodium/potassium/calcium exchanger 4 [Cricetulus griseus]
Length = 1206
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
Query: 88 TVVITDTMSAIYQ--QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQL 145
T+ D + A + Q + ++ L N+L+TLR +GNVL+AVDTAGRVLEL +L+Q+
Sbjct: 112 TLFTLDDVDAAFDKIQQLKFSQIVNLKANVLETLRGDGNVLIAVDTAGRVLELAQLLDQI 171
Query: 146 WRNKDSGL 153
WR KD+GL
Sbjct: 172 WRTKDAGL 179
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 361 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 395
>gi|393241063|gb|EJD48587.1| hypothetical protein AURDEDRAFT_183466 [Auricularia delicata
TFB-10046 SS5]
Length = 893
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 56/111 (50%), Gaps = 13/111 (11%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR------------FIRPTVVITDTMS 96
G IWKI IVY VD N +ERHL+G VL R RP V+ITD
Sbjct: 197 GTIWKIRSPSVGTIVYAVDMNHMRERHLDGTVLFRSAPGAGATIFEPLARPDVLITDADK 256
Query: 97 AIYQQARRRTRDERLMTNILQTLRNNG-NVLVAVDTAGRVLELTHMLEQLW 146
+ ARR+ RD L+ + TL ++L+ D++ RVLEL + +Q W
Sbjct: 257 TLVVNARRKDRDAALLELVSDTLGTRSHSLLMPCDSSTRVLELLVLFDQHW 307
>gi|384486005|gb|EIE78185.1| hypothetical protein RO3G_02889 [Rhizopus delemar RA 99-880]
Length = 613
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 72/138 (52%), Gaps = 4/138 (2%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDF 68
S K+ K+ H+T IK D+ ++ G + G V+ G+E +VY D+
Sbjct: 100 SAMIKNCMKKVHAVSLHQT-IKVDDELEIKAYYAGHVL--GAAMFYVRVGQESVVYTGDY 156
Query: 69 NLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVA 128
N+ +RHL +D+ +RP V++T++ A + +R+R+ +T + + + N GNV++
Sbjct: 157 NMTPDRHLGSAWIDK-VRPDVLVTESTYATTIRDSKRSRERDFLTKVHECVLNGGNVIIP 215
Query: 129 VDTAGRVLELTHMLEQLW 146
V GR EL ++E W
Sbjct: 216 VFALGRAQELCILIESYW 233
>gi|402080824|gb|EJT75969.1| hypothetical protein GGTG_05894 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 974
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 15/118 (12%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC-------------VLDRFIRPTVVITDTM 95
G IW I + G E IVY VD+NL ++ G V+++ +PT +I +
Sbjct: 187 GTIWHI-QHGLESIVYAVDWNLARDNVYAGAAWMGSGHGSGGAEVMEQLRKPTALIC-SA 244
Query: 96 SAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
A R RD++L+ + +T+ G VL+ +D++ RVLEL ++LE WR++ SG+
Sbjct: 245 RAGEGGLSRGARDQQLLDTMRRTVARGGTVLIPIDSSARVLELAYLLEHAWRSEASGV 302
>gi|255934198|ref|XP_002558380.1| Pc12g15810 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582999|emb|CAP81208.1| Pc12g15810 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 893
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 15/118 (12%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E + G V+++ +PT +I T
Sbjct: 199 GTIWHI-QHGLESIVYAVDWNQARESVVAGAAWFGGSGASGTEVIEQLRKPTALICSTTG 257
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSG 152
+ R+ RD+ L+ I +L G VL+ DT+ RVLEL + LE WR+ +G
Sbjct: 258 GDKLAPSGGRKKRDDLLLDMIRSSLAKGGTVLIPTDTSARVLELAYALEHSWRDAANG 315
>gi|301787149|ref|XP_002928998.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like, partial [Ailuropoda melanoleuca]
Length = 145
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 37/43 (86%)
Query: 111 LMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
L N+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 45 LKANVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 87
>gi|449549925|gb|EMD40890.1| hypothetical protein CERSUDRAFT_111471 [Ceriporiopsis subvermispora
B]
Length = 934
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 11/109 (10%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR-----------FIRPTVVITDTMSA 97
G IWKI I+Y VD N +E HL+G VL R RP + ITD A
Sbjct: 212 GTIWKIRSPTAGTILYAVDMNHMREHHLDGTVLIRQANAGGGVFESLARPDLFITDAERA 271
Query: 98 IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
ARR+ R L+ + TL + ++L+ D++ RVLEL +L+Q W
Sbjct: 272 HVTTARRKDRVAALLDCVTATLTSRNSLLLPCDSSTRVLELLVLLDQHW 320
>gi|392593024|gb|EIW82350.1| hypothetical protein CONPUDRAFT_54247 [Coniophora puteana
RWD-64-598 SS2]
Length = 926
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 9/111 (8%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVL---------DRFIRPTVVITDTMSAIY 99
G IWKI I+Y V+ N +ERHL+G +L ++ RP ++ITD A
Sbjct: 207 GTIWKIRSPSAGTILYAVNINHMRERHLDGTILVRSAGGGVFEQLARPDLLITDADRANV 266
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD 150
+RR+ RD LM I TL + ++L+ D++ RVLEL +L+Q W+ D
Sbjct: 267 VTSRRKDRDAALMDCISATLSSRSSLLLPCDSSTRVLELLVLLDQHWKFHD 317
>gi|313238583|emb|CBY13629.1| unnamed protein product [Oikopleura dioica]
Length = 618
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 42 YGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQ 101
Y + ++KI G+E ++Y DFN+ +RHL DR +PTV+I+++ A +
Sbjct: 158 YAGHVLGAAMFKITV-GDESVLYTGDFNMTPDRHLGAAWADR-CKPTVLISESTYATTIR 215
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+R+R+ + I + + N G VL+ V GR EL +LEQ W
Sbjct: 216 DSKRSRERDFLKKIHRCVENGGKVLIPVFALGRAQELCILLEQYW 260
>gi|387594235|gb|EIJ89259.1| integrator complex subunit 11 [Nematocida parisii ERTm3]
gi|387594982|gb|EIJ92609.1| integrator complex subunit 11 [Nematocida parisii ERTm1]
Length = 502
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
VK G+E +VY D+N+ +RHL+G + + + P+V+IT++ A+ + RR ++ + +
Sbjct: 166 VKVGDESVVYTGDYNMTPDRHLDGAWMPK-VYPSVLITESTYALLVRDCRREKERDFIES 224
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
++Q ++N G VL+ V GR EL +L+ W
Sbjct: 225 VVQCVKNGGKVLIPVFALGRAHELCLLLDTHW 256
>gi|417403209|gb|JAA48422.1| Putative mrna cleavage and polyadenylation factor ii complex brr5
cpsf subunit [Desmodus rotundus]
Length = 604
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ DE ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDEELQIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RPT++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPTLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|417403203|gb|JAA48419.1| Putative mrna cleavage and polyadenylation factor ii complex brr5
cpsf subunit [Desmodus rotundus]
Length = 603
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ DE ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDEELQIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RPT++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPTLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|121705410|ref|XP_001270968.1| cleavage and polyadenylylation specificity factor, putative
[Aspergillus clavatus NRRL 1]
gi|119399114|gb|EAW09542.1| cleavage and polyadenylylation specificity factor, putative
[Aspergillus clavatus NRRL 1]
Length = 1014
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 15/118 (12%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E + G V+++ +PT ++ T
Sbjct: 203 GTIWHI-QHGMESIVYAVDWNQARESVVAGAAWFGGSGASGTEVIEQLRKPTALVCSTRG 261
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSG 152
R+ RD+ L+ I +L G VL+ DT+ RVLEL + LE WR+ +G
Sbjct: 262 GDKFALPGGRKKRDDLLLDMIRSSLAKGGTVLIPTDTSARVLELAYALEHAWRDAAAG 319
>gi|330920784|ref|XP_003299151.1| hypothetical protein PTT_10086 [Pyrenophora teres f. teres 0-1]
gi|311327303|gb|EFQ92764.1| hypothetical protein PTT_10086 [Pyrenophora teres f. teres 0-1]
Length = 953
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 15/117 (12%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTM- 95
G IW I + G E +VY VD+N +E L+G VL++ PT +I +
Sbjct: 190 GSIWHI-QHGMESVVYAVDWNQAREHVLSGAAWLGGPGTGGSEVLEQLRHPTALICSSKN 248
Query: 96 SAIYQQARRRT-RDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDS 151
+ + ++AR RDE L+ I T+ N G VL+ D++ R+LEL ++LE+ W +++
Sbjct: 249 TGMVKKARSPNERDEALLEMIRNTVSNGGTVLIPSDSSARILELAYLLEETWEREET 305
>gi|189192102|ref|XP_001932390.1| cleavage and polyadenylation specificity factor subunit 2
[Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187973996|gb|EDU41495.1| cleavage and polyadenylation specificity factor subunit 2
[Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 954
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 15/112 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTM- 95
G IW I + G E +VY VD+N +E L+G VL++ PT +I T
Sbjct: 190 GSIWHI-QHGMESVVYAVDWNQAREHVLSGAAWLGGPGTGGSEVLEQLRHPTALICSTKN 248
Query: 96 SAIYQQARRRT-RDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + ++AR RDE L+ I T+ N G VL+ D++ R+LEL ++LE W
Sbjct: 249 TGMVKKARSPNERDEALLEMIRNTISNGGTVLIPSDSSARILELAYLLEDTW 300
>gi|67525249|ref|XP_660686.1| hypothetical protein AN3082.2 [Aspergillus nidulans FGSC A4]
gi|40744477|gb|EAA63653.1| hypothetical protein AN3082.2 [Aspergillus nidulans FGSC A4]
gi|259485970|tpe|CBF83440.1| TPA: cleavage and polyadenylylation specificity factor, putative
(AFU_orthologue; AFUA_3G09720) [Aspergillus nidulans
FGSC A4]
Length = 1005
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E + G V+++ +PT +I T
Sbjct: 202 GTIWHI-QHGMESIVYAVDWNQARESVVAGAAWFGGSGASGTEVIEQLRKPTALICSTRG 260
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R+ RDE L+ I TL G VL+ DT+ RVLEL + LE WR+
Sbjct: 261 GDKFALPGGRKKRDEILLDMIRSTLVKGGTVLIPTDTSARVLELAYALEHAWRD 314
>gi|169599735|ref|XP_001793290.1| hypothetical protein SNOG_02691 [Phaeosphaeria nodorum SN15]
gi|160705309|gb|EAT89422.2| hypothetical protein SNOG_02691 [Phaeosphaeria nodorum SN15]
Length = 957
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 65/114 (57%), Gaps = 14/114 (12%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC-----------VLDRFIRPTVVITDTM-S 96
G IW I + G E +VY VD+N +E L+G VL++ RPT +I + S
Sbjct: 190 GSIWHI-QHGMESVVYAVDWNQAREHVLSGAAWLGTGTGGSEVLEQLRRPTAMICSSKNS 248
Query: 97 AIYQQARRRT-RDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+ + A+ + RDE L++ I T+ G+VL+ D++ R+LE+ ++LE+ W ++
Sbjct: 249 GLVKVAKAPSKRDEELLSMIRDTVAKGGSVLIPCDSSARILEIAYLLEKSWHSE 302
>gi|396500483|ref|XP_003845730.1| similar to cleavage and polyadenylation specificity factor subunit
2 [Leptosphaeria maculans JN3]
gi|312222311|emb|CBY02251.1| similar to cleavage and polyadenylation specificity factor subunit
2 [Leptosphaeria maculans JN3]
Length = 954
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 63/113 (55%), Gaps = 15/113 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTM- 95
G IW I + G E +VY VD+N E L+G VL + RPT +I +
Sbjct: 190 GSIWHI-QHGMESVVYAVDWNQATEHVLSGAAWLGGPGAGGSEVLKQLRRPTALICSSKG 248
Query: 96 SAIYQQARRRT-RDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
+ + + AR + RDE L+ + +T+ N G+VL+ D++ R+LEL ++LE+ W+
Sbjct: 249 TELVKVARPPSKRDEALLALVRETVANGGSVLIPSDSSARILELAYLLEETWQ 301
>gi|169767492|ref|XP_001818217.1| cleavage and polyadenylylation specificity factor [Aspergillus
oryzae RIB40]
gi|83766072|dbj|BAE56215.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1014
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E + G V+++ +PT ++ T
Sbjct: 211 GTIWHI-QHGMESIVYAVDWNQARESVMAGAAWFGGSGASGTEVIEQLRKPTALVCSTRG 269
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R+ RD+ L+ I TL G VL+ DT+ RVLEL + LE WR+
Sbjct: 270 GDKFALPGGRKKRDDLLLDMIRSTLAKGGTVLIPTDTSARVLELAYALEHAWRD 323
>gi|391871950|gb|EIT81099.1| mRNA cleavage and polyadenylation factor II complex, subunit CFT2
[Aspergillus oryzae 3.042]
Length = 1010
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E + G V+++ +PT ++ T
Sbjct: 207 GTIWHI-QHGMESIVYAVDWNQARESVMAGAAWFGGSGASGTEVIEQLRKPTALVCSTRG 265
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R+ RD+ L+ I TL G VL+ DT+ RVLEL + LE WR+
Sbjct: 266 GDKFALPGGRKKRDDLLLDMIRSTLAKGGTVLIPTDTSARVLELAYALEHAWRD 319
>gi|378756880|gb|EHY66904.1| cleavage and polyadenylation specificity factor subunit 3
[Nematocida sp. 1 ERTm2]
Length = 501
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
V+ G+E +VY D+N+ +RHL+G + + + P V+IT++ A+ + RR ++ + +
Sbjct: 166 VRVGDESVVYTGDYNMTPDRHLDGAWMPK-VYPNVLITESTYALLVRDCRREKEREFIES 224
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
++Q ++N G VL+ V GR EL +L+ W
Sbjct: 225 VVQCVKNGGKVLIPVFALGRAHELCLLLDTHW 256
>gi|50549403|ref|XP_502172.1| YALI0C23232p [Yarrowia lipolytica]
gi|49648039|emb|CAG82492.1| YALI0C23232p [Yarrowia lipolytica CLIB122]
Length = 799
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 13/108 (12%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC--------VLDRFIRPTVVITDTMSAIYQ 100
G IW++ + ++ +VY VD+N K+ HL+G ++ RPTV++ + + +
Sbjct: 170 GTIWRL-QHQQDNVVYAVDWNHAKDSHLSGAAFLQKGGQIVSALHRPTVMVCGSQTGL-- 226
Query: 101 QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R + RD L ++I + L+ G+VL+ RVLE+ HML+ LW N
Sbjct: 227 --RLKRRDILLWSSIQKALKRGGSVLLPTSVGSRVLEVIHMLDDLWTN 272
>gi|296479091|tpg|DAA21206.1| TPA: cleavage and polyadenylation specific factor 3-like [Bos
taurus]
Length = 599
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP+++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPSLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLWRNKD 150
V GR EL +LE W D
Sbjct: 238 PVFALGRAQELCILLETFWERMD 260
>gi|274326663|ref|NP_001094578.1| integrator complex subunit 11 [Bos taurus]
gi|152941100|gb|ABS44987.1| related to CPSF subunits 68 kDa [Bos taurus]
Length = 599
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP+++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPSLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLWRNKD 150
V GR EL +LE W D
Sbjct: 238 PVFALGRAQELCILLETFWERMD 260
>gi|440911726|gb|ELR61363.1| Integrator complex subunit 11 [Bos grunniens mutus]
Length = 599
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP+++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPSLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLWRNKD 150
V GR EL +LE W D
Sbjct: 238 PVFALGRAQELCILLETFWERMD 260
>gi|425768274|gb|EKV06801.1| Cleavage and polyadenylylation specificity factor, putative
[Penicillium digitatum Pd1]
gi|425770355|gb|EKV08828.1| Cleavage and polyadenylylation specificity factor, putative
[Penicillium digitatum PHI26]
Length = 1001
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 15/118 (12%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY +D+N +E + G V+++ +PT +I T
Sbjct: 199 GTIWHI-QHGLESIVYAMDWNQARESVVAGAAWFGGSGASGTEVIEQLRKPTALICSTTG 257
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSG 152
+ R+ RD+ L+ I +L G VL+ DT+ RVLEL + LE WR+ +G
Sbjct: 258 GDKLAPSGGRKKRDDLLLDMIRSSLAKGGTVLIPTDTSARVLELAYSLEHSWRDAANG 315
>gi|118572556|sp|Q2YDM2.2|INT11_BOVIN RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|158455110|gb|AAI10156.2| CPSF3L protein [Bos taurus]
Length = 599
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP+++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPSLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLWRNKD 150
V GR EL +LE W D
Sbjct: 238 PVFALGRAQELCILLETFWERMD 260
>gi|350288464|gb|EGZ69700.1| hypothetical protein NEUTE2DRAFT_152270 [Neurospora tetrasperma
FGSC 2509]
Length = 1070
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 16/115 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC--------------VLDRFIRPTVVITDT 94
G IW I + G E IVY VD+N +E G V+++ +PT ++ +
Sbjct: 258 GTIWHI-QHGLESIVYAVDWNQARENVFAGAAWLGGNHGGAGGTQVIEQLRKPTALVCSS 316
Query: 95 MSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+ R + RDE+LM +I + G VL+ VD++ RVLEL+++LE WR +
Sbjct: 317 RTPDAALPRAK-RDEQLMESIKLCIARGGTVLIPVDSSARVLELSYLLEHAWRKE 370
>gi|336261956|ref|XP_003345764.1| hypothetical protein SMAC_05921 [Sordaria macrospora k-hell]
gi|380090100|emb|CCC12183.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1003
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 16/115 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC--------------VLDRFIRPTVVITDT 94
G IW I + G E IVY VD+N +E G V+++ +PT ++ +
Sbjct: 190 GTIWHI-QHGLESIVYAVDWNHSRENVFAGAAWLSGNHGGAGSTQVIEQLHKPTALVCSS 248
Query: 95 MSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+ +R + RDE+LM +I + G VL+ VD++ RVLEL+++LE WR +
Sbjct: 249 RTPDASLSRLK-RDEQLMESIKLCIARGGTVLIPVDSSARVLELSYLLEHAWRKE 302
>gi|336466927|gb|EGO55091.1| hypothetical protein NEUTE1DRAFT_130968 [Neurospora tetrasperma
FGSC 2508]
Length = 1051
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 16/115 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC--------------VLDRFIRPTVVITDT 94
G IW I + G E IVY VD+N +E G V+++ +PT ++ +
Sbjct: 239 GTIWHI-QHGLESIVYAVDWNQARENVFAGAAWLGGNHGGAGGTQVIEQLRKPTALVCSS 297
Query: 95 MSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+ R + RDE+LM +I + G VL+ VD++ RVLEL+++LE WR +
Sbjct: 298 RTPDAALPRAK-RDEQLMESIKLCIARGGTVLIPVDSSARVLELSYLLEHAWRKE 351
>gi|451853389|gb|EMD66683.1| hypothetical protein COCSADRAFT_35187 [Cochliobolus sativus ND90Pr]
Length = 948
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 60/115 (52%), Gaps = 21/115 (18%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVI----- 91
G IW I + G E +VY VD+N +E L+G VL++ RPT +I
Sbjct: 190 GSIWHI-QHGMESVVYAVDWNQAREHVLSGAAWLGGPGTGGSEVLEQLRRPTALICSSRN 248
Query: 92 TDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
TD + ++R DE L+ I T+ N G VL+ D++ RVLEL ++LE+ W
Sbjct: 249 TDMVKVAKPPSKR---DEALIEMIRDTVANGGTVLIPSDSSARVLELAYLLEETW 300
>gi|115396064|ref|XP_001213671.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114193240|gb|EAU34940.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 1005
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E + G V+++ +PT ++ T
Sbjct: 203 GTIWHI-QHGMESIVYAVDWNQARESVVAGAAWFGGPGASGTEVIEQLRKPTALVCSTRG 261
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R+ RD+ L+ I TL G VL+ DT+ RVLEL + LE WR+
Sbjct: 262 GDKFALPGGRKKRDDLLLDMIRSTLAKGGTVLIPTDTSARVLELAYALEHAWRD 315
>gi|452004821|gb|EMD97277.1| hypothetical protein COCHEDRAFT_1163978 [Cochliobolus
heterostrophus C5]
Length = 948
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 60/115 (52%), Gaps = 21/115 (18%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVI----- 91
G IW I + G E +VY VD+N +E L+G VL++ RPT +I
Sbjct: 190 GSIWHI-QHGMESVVYAVDWNQAREHVLSGAAWLGGPGTSGSEVLEQLRRPTALICSSRN 248
Query: 92 TDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
TD + ++R DE L+ I T+ N G VL+ D++ RVLEL ++LE+ W
Sbjct: 249 TDMVKVAKPPSKR---DEALIEMIRDTVANGGTVLIPSDSSARVLELAYLLEETW 300
>gi|164424681|ref|XP_958078.2| hypothetical protein NCU06869 [Neurospora crassa OR74A]
gi|157070616|gb|EAA28842.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 986
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 16/115 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC--------------VLDRFIRPTVVITDT 94
G IW I + G E IVY VD+N +E G V+++ +PT ++ +
Sbjct: 190 GTIWHI-QHGLESIVYAVDWNQARENVFAGAAWLGGNHGGAGGTQVIEQLRKPTALVCSS 248
Query: 95 MSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+ R + RDE+LM +I + G VL+ VD++ RVLEL+++LE WR +
Sbjct: 249 RTPDAALPRAK-RDEQLMESIKLCIARGGTVLIPVDSSARVLELSYLLEHAWRKE 302
>gi|167525469|ref|XP_001747069.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774364|gb|EDQ87993.1| predicted protein [Monosiga brevicollis MX1]
Length = 730
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
V+ G + +VY D+N+ +RHL +DR P V+I+++ A + RR R+ L+T
Sbjct: 171 VRVGNQSVVYTGDYNMSPDRHLGAAWIDR-CEPDVIISESTYATTIRDSRRAREHDLLTK 229
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
I Q ++ G VL+ V GR EL +LE W+
Sbjct: 230 ITQCVQRGGKVLLPVFALGRAQELCILLETHWQ 262
>gi|426240429|ref|XP_004014105.1| PREDICTED: integrator complex subunit 11 [Ovis aries]
Length = 515
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 4/143 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLWRNKD 150
V GR EL +LE W D
Sbjct: 238 PVFALGRAQELCILLETFWERMD 260
>gi|443898849|dbj|GAC76183.1| mRNA cleavage and polyadenylation factor II complex, subunit CFT2
[Pseudozyma antarctica T-34]
Length = 1135
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 17/115 (14%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVL-----------------DRFIRPTVVI 91
G IWKI +V +D+N +ERHL+G +L D RP ++I
Sbjct: 322 GAIWKIRSPTSGTVVVALDWNHNRERHLDGTILLSSSAAGPGMSSSGSGADAVRRPDLLI 381
Query: 92 TDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
T+ + RR+ RD ++ + +T+++ +VL +D + R+LEL +L+Q W
Sbjct: 382 TEIERGLVVNTRRKDRDAAIIDLVHKTIQSGHSVLFPIDASARLLELMVLLDQHW 436
>gi|119491987|ref|XP_001263488.1| cleavage and polyadenylylation specificity factor, putative
[Neosartorya fischeri NRRL 181]
gi|119411648|gb|EAW21591.1| cleavage and polyadenylylation specificity factor, putative
[Neosartorya fischeri NRRL 181]
Length = 1013
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 15/118 (12%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E + G V+++ +PT ++ T
Sbjct: 202 GTIWHI-QHGMESIVYAVDWNQARESVVAGAAWFGGSGASGAEVIEQLRKPTALVCSTRG 260
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSG 152
R+ RD+ L+ I +L G VL+ DT+ RVLEL + LE WR+ G
Sbjct: 261 GDKFALPGGRKKRDDLLLDMIRSSLAKGGTVLIPTDTSARVLELAYALEHAWRDVAGG 318
>gi|159127661|gb|EDP52776.1| cleavage and polyadenylylation specificity factor, putative
[Aspergillus fumigatus A1163]
Length = 1013
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 15/118 (12%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E + G V+++ +PT ++ T
Sbjct: 202 GTIWHI-QHGMESIVYAVDWNQARESVVAGAAWFGGSGASGAEVIEQLRKPTALVCSTRG 260
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSG 152
R+ RD+ L+ I +L G VL+ DT+ RVLEL + LE WR+ G
Sbjct: 261 GDKFALPGGRKKRDDLLLDMIRSSLAKGGTVLIPTDTSARVLELAYALEHAWRDVAGG 318
>gi|70999860|ref|XP_754647.1| cleavage and polyadenylylation specificity factor [Aspergillus
fumigatus Af293]
gi|66852284|gb|EAL92609.1| cleavage and polyadenylylation specificity factor, putative
[Aspergillus fumigatus Af293]
Length = 1013
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 15/118 (12%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E + G V+++ +PT ++ T
Sbjct: 202 GTIWHI-QHGMESIVYAVDWNQARESVVAGAAWFGGSGASGAEVIEQLRKPTALVCSTRG 260
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSG 152
R+ RD+ L+ I +L G VL+ DT+ RVLEL + LE WR+ G
Sbjct: 261 GDKFALPGGRKKRDDLLLDMIRSSLAKGGTVLIPTDTSARVLELAYALEHAWRDVAGG 318
>gi|403337788|gb|EJY68117.1| Integrator complex subunit 11 [Oxytricha trifallax]
Length = 771
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 4/138 (2%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDF 68
S K+ + HET++ G+ AY G V+ E +VY D+
Sbjct: 140 SDMIKACIAKISTIQLHETQVIK---GDIKVTAYYAGHVLGACMFYVECNGESVVYTGDY 196
Query: 69 NLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVA 128
N+ +RHL +D+ +RP V IT+T A + +R+R+ + + +TL N G VL+
Sbjct: 197 NMTADRHLGAAWIDK-LRPDVCITETTYATTIRDSKRSREREFLKVVHETLDNGGKVLIP 255
Query: 129 VDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 256 VFALGRAQELCVLLETYW 273
>gi|431922648|gb|ELK19568.1| Integrator complex subunit 11 [Pteropus alecto]
Length = 603
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ DE ++ Y + +++I + G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDEELEIKAY-YAGHVLGAAMFQI-RVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +DR RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDR-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|432090010|gb|ELK23618.1| Integrator complex subunit 11 [Myotis davidii]
Length = 561
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ DE ++ Y + +++I K G E +VY D
Sbjct: 156 TSQMIKDCMKKVVAVRLHQT-VQVDEELQIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 212
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 213 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 271
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 272 PVFALGRAQELCILLETFW 290
>gi|350585498|ref|XP_003127541.3| PREDICTED: integrator complex subunit 11-like [Sus scrofa]
Length = 599
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Query: 42 YGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQ 101
Y + +++I K G E +VY D+N+ +RHL +D+ RP ++IT++ A +
Sbjct: 154 YAGHVLGAAMFQI-KVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYATTIR 211
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD 150
+R R+ + + +T+ G VL+ V GR EL +LE W D
Sbjct: 212 DSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMD 260
>gi|134083194|emb|CAK42833.1| unnamed protein product [Aspergillus niger]
Length = 865
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E + G V+++ +PT ++ T
Sbjct: 179 GTIWHI-QHGMESIVYAVDWNQARESVVAGAAWFGGSGASGTEVIEQLRKPTALVCSTRG 237
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R+ RD+ L+ I T+ G VL+ DT+ RVLEL + LE WR+
Sbjct: 238 GERFALPGGRKKRDDLLLDMIRSTIAKGGTVLIPTDTSARVLELAYALEHAWRD 291
>gi|409079696|gb|EKM80057.1| hypothetical protein AGABI1DRAFT_72888 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426198540|gb|EKV48466.1| hypothetical protein AGABI2DRAFT_220282 [Agaricus bisporus var.
bisporus H97]
Length = 919
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 57/107 (53%), Gaps = 9/107 (8%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVL---------DRFIRPTVVITDTMSAIY 99
G IWKI I+Y V N KERHL+G VL + RP ++ITD A
Sbjct: 211 GTIWKIRSPTSGTIIYAVHMNHMKERHLDGTVLMKNASGGIFEPLARPDLLITDADRANV 270
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+RR+ RD L+ I TL + ++L+ D++ R+LEL +L+Q W
Sbjct: 271 ITSRRKDRDAALIDTITATLSSRSSLLLPCDSSTRILELLVLLDQHW 317
>gi|343958314|dbj|BAK63012.1| protein related to CPSF subunits 68 kDa [Pan troglodytes]
Length = 600
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T +DE + +A + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQTVQVHDELEIKAYYA--GHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|322700762|gb|EFY92515.1| cleavage and polyadenylylation specificity factor, putative
[Metarhizium acridum CQMa 102]
Length = 960
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 15/113 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E G V+++ +PT +I +
Sbjct: 188 GTIWHI-QHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAEVIEQLRKPTALICSSRG 246
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
A Q A R RDE+L+ I + G VL+ VD++ RVLEL+++LE WR
Sbjct: 247 AQKSAQTAGRAKRDEQLLEMIKTCVTKGGTVLIPVDSSARVLELSYLLEHAWR 299
>gi|66816359|ref|XP_642189.1| integrator complex subunit 11 [Dictyostelium discoideum AX4]
gi|74856745|sp|Q54YL3.1|INT11_DICDI RecName: Full=Integrator complex subunit 11 homolog
gi|60470287|gb|EAL68267.1| integrator complex subunit 11 [Dictyostelium discoideum AX4]
Length = 744
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 5/137 (3%)
Query: 16 KKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERH 75
KK P+ H+T IK DE + ++ G + G K G+E +VY D+N+ +RH
Sbjct: 130 KKVIPV-NLHQT-IKVDEELSIKAYYAGHVL--GAAMFYAKVGDESVVYTGDYNMTPDRH 185
Query: 76 LNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRV 135
L +D+ ++P V+IT+T A + +R R+ + I + + G VL+ V GRV
Sbjct: 186 LGSAWIDQ-VKPDVLITETTYATTIRDSKRGRERDFLKRIHECVEKGGKVLIPVFALGRV 244
Query: 136 LELTHMLEQLWRNKDSG 152
EL +++ W + G
Sbjct: 245 QELCILIDSYWEQMNLG 261
>gi|344283025|ref|XP_003413273.1| PREDICTED: integrator complex subunit 11-like [Loxodonta africana]
Length = 719
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 241 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 297
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +DR RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 298 YNMTPDRHLGAAWIDR-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 356
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 357 PVFALGRAQELCILLETFW 375
>gi|350633583|gb|EHA21948.1| hypothetical protein ASPNIDRAFT_41125 [Aspergillus niger ATCC 1015]
Length = 1015
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E + G V+++ +PT ++ T
Sbjct: 203 GTIWHI-QHGMESIVYAVDWNQARESVVAGAAWFGGSGASGTEVIEQLRKPTALVCSTRG 261
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R+ RD+ L+ I T+ G VL+ DT+ RVLEL + LE WR+
Sbjct: 262 GERFALPGGRKKRDDLLLDMIRSTIAKGGTVLIPTDTSARVLELAYALEHAWRD 315
>gi|441671688|ref|XP_004093259.1| PREDICTED: LOW QUALITY PROTEIN: integrator complex subunit 11
[Nomascus leucogenys]
Length = 585
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVXALGRAQELCILLETFW 256
>gi|317036117|ref|XP_001397647.2| cleavage and polyadenylylation specificity factor [Aspergillus
niger CBS 513.88]
Length = 1015
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E + G V+++ +PT ++ T
Sbjct: 203 GTIWHI-QHGMESIVYAVDWNQARESVVAGAAWFGGSGASGTEVIEQLRKPTALVCSTRG 261
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R+ RD+ L+ I T+ G VL+ DT+ RVLEL + LE WR+
Sbjct: 262 GERFALPGGRKKRDDLLLDMIRSTIAKGGTVLIPTDTSARVLELAYALEHAWRD 315
>gi|342882935|gb|EGU83499.1| hypothetical protein FOXB_05909 [Fusarium oxysporum Fo5176]
Length = 950
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 18/123 (14%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E G V+++ +PT +I +
Sbjct: 188 GTIWHI-QHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAEVIEQLRKPTALICSSRG 246
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN---KDS 151
A Q R RDE+L+ I + G VL+ VD++ RVLEL+++LE WR D+
Sbjct: 247 ADRTAQTGGRAKRDEQLIDTIKACVTRGGTVLIPVDSSARVLELSYLLEHAWRTDAASDA 306
Query: 152 GLV 154
G++
Sbjct: 307 GVL 309
>gi|322708414|gb|EFY99991.1| cleavage and polyadenylylation specificity factor, putative
[Metarhizium anisopliae ARSEF 23]
Length = 960
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 15/113 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E G V+++ +PT +I +
Sbjct: 188 GTIWHI-QHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAEVIEQLRKPTALICSSRG 246
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
A Q A R RDE+L+ I + G VL+ VD++ RVLEL+++LE WR
Sbjct: 247 AQKSAQTAGRAKRDEQLLEMIKTCVTKGGTVLIPVDSSARVLELSYLLEHAWR 299
>gi|358368318|dbj|GAA84935.1| cleavage and polyadenylylation specificity factor [Aspergillus
kawachii IFO 4308]
Length = 1015
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW V+ G E IVY VD+N +E + G V+++ +PT ++ T
Sbjct: 203 GTIWH-VQHGMESIVYAVDWNQARESVVAGAAWFGGSGASGTEVIEQLRKPTALVCSTRG 261
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R+ RD+ L+ I T+ G VL+ DT+ RVLEL + LE WR+
Sbjct: 262 GERFALPGGRKKRDDLLLDMIRSTIAKGGTVLIPTDTSARVLELAYALEHAWRD 315
>gi|355744837|gb|EHH49462.1| hypothetical protein EGM_00117, partial [Macaca fascicularis]
Length = 592
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 42 YGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQ 101
Y + +++I K G E +VY D+N+ ERHL +D+ RP ++IT++ A +
Sbjct: 146 YAGHVLGAAMFQI-KVGSESVVYTGDYNMTPERHLGAAWIDK-CRPNLLITESTYATTIR 203
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+R R+ + + +T+ G VL+ V GR EL +LE W
Sbjct: 204 DSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFW 248
>gi|389746898|gb|EIM88077.1| hypothetical protein STEHIDRAFT_94995 [Stereum hirsutum FP-91666
SS1]
Length = 968
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 12/110 (10%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR------------FIRPTVVITDTMS 96
G IWKI I+Y V+ N +ERHL+G VL R RP ++ITD
Sbjct: 206 GTIWKIRSPSAGTIMYAVNMNHMRERHLDGTVLMRQGGGIAPGVFEPLARPDLLITDAAR 265
Query: 97 AIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
A +RR+ RD L+ I L + ++L+ D + RVLEL +L+Q W
Sbjct: 266 ADVLSSRRKDRDASLIDTITAALSSRSSLLLPCDASTRVLELLVLLDQHW 315
>gi|302899216|ref|XP_003048005.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256728937|gb|EEU42292.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 958
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E G V+++ +PT +I +
Sbjct: 188 GTIWHI-QHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAEVIEQLRKPTALICSSRG 246
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
A Q R RDE+L+ I + G VL+ VD++ RVLEL+++LE WR
Sbjct: 247 ADRTAQAGGRAKRDEQLIDTIKACVTRGGTVLIPVDSSARVLELSYLLEHAWRT 300
>gi|378733596|gb|EHY60055.1| hypothetical protein HMPREF1120_08027 [Exophiala dermatitidis
NIH/UT8656]
Length = 948
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 13/112 (11%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC----------VLDRFIRPTVVITDTMSA- 97
G IW I ++G E IVY VD+N +E + G V+++ +P+ ++ ++ A
Sbjct: 186 GTIWHI-QQGMESIVYAVDWNQARENVVAGAAWFGGVGGAEVIEQLRKPSALVCSSVGAT 244
Query: 98 -IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
+ R+ RD+ L+ +I ++ G VL+ D++ RVLEL +LE+ W +
Sbjct: 245 RVALSGGRKARDDALLGHIKTSVAKGGTVLIPTDSSARVLELAWLLEKAWSD 296
>gi|403297738|ref|XP_003939709.1| PREDICTED: integrator complex subunit 11 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 600
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 70/139 (50%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ + G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVEHGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|260790823|ref|XP_002590440.1| hypothetical protein BRAFLDRAFT_289082 [Branchiostoma floridae]
gi|229275634|gb|EEN46451.1| hypothetical protein BRAFLDRAFT_289082 [Branchiostoma floridae]
Length = 597
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 11/147 (7%)
Query: 6 DANSRFFKSN------KKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGE 59
++ + FF S KK P+ H+T ++ D+ ++ G + G ++K G
Sbjct: 108 ESQANFFTSQMIKDCMKKVIPV-NLHQT-VQVDDELEIKAYYAGHVL--GAAMFLIKVGS 163
Query: 60 EEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTL 119
E +VY D+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+
Sbjct: 164 ESVVYTGDYNMTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLKKVHETI 222
Query: 120 RNNGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +LE W
Sbjct: 223 EKGGKVLIPVFALGRAQELCILLETFW 249
>gi|367047989|ref|XP_003654374.1| hypothetical protein THITE_2117338 [Thielavia terrestris NRRL 8126]
gi|347001637|gb|AEO68038.1| hypothetical protein THITE_2117338 [Thielavia terrestris NRRL 8126]
Length = 1015
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 16/113 (14%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC--------------VLDRFIRPTVVITDT 94
G IW I + G E IVY VD+N +E +G V+++ +PT ++ +
Sbjct: 188 GTIWHI-QHGLESIVYAVDWNQARENVFSGAAWLGGGLGGAGGAEVIEQLRKPTALVCSS 246
Query: 95 MSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
+ AR R RDE+L+ +I + G VL+ VD++ RVLEL ++LE WR
Sbjct: 247 RTPETAIARGR-RDEQLLESIKLCIARGGTVLIPVDSSARVLELAYLLEHAWR 298
>gi|389638668|ref|XP_003716967.1| hypothetical protein MGG_06570 [Magnaporthe oryzae 70-15]
gi|351642786|gb|EHA50648.1| hypothetical protein MGG_06570 [Magnaporthe oryzae 70-15]
gi|440474177|gb|ELQ42934.1| cleavage and polyadenylation specificity factor subunit 2
[Magnaporthe oryzae Y34]
gi|440484966|gb|ELQ64966.1| cleavage and polyadenylation specificity factor subunit 2
[Magnaporthe oryzae P131]
Length = 962
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 15/116 (12%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC-------------VLDRFIRPTVVITDTM 95
G IW I + G E IVY VD+NL ++ G V+++ +PT ++ T
Sbjct: 188 GTIWHI-QHGMESIVYAVDWNLARDNVYAGAAWMGGGHGGGGAEVIEQLRKPTALVCSTR 246
Query: 96 SAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDS 151
+A R RD++L+ + + G VL+ VD++ RVLEL ++LE WR++ S
Sbjct: 247 TA-EGGLTRAARDKQLLDTMRMAISRGGTVLIPVDSSARVLELAYLLEHAWRSEAS 301
>gi|328873132|gb|EGG21499.1| integrator complex subunit 11 [Dictyostelium fasciculatum]
Length = 645
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 5/131 (3%)
Query: 16 KKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERH 75
KK P+ H+T IK D+ + ++ G + G K GEE +VY D+N+ +RH
Sbjct: 130 KKVIPI-ALHQT-IKVDDELSIKAYYAGHVL--GAAMFYAKVGEESVVYTGDYNMTPDRH 185
Query: 76 LNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRV 135
L +D+ +RP ++IT+T A + +R R+ + + + + G VL+ V GRV
Sbjct: 186 LGSAWIDQ-VRPNLLITETTYATTIRDSKRGRERDFLKRVHECVEKGGKVLIPVFALGRV 244
Query: 136 LELTHMLEQLW 146
EL +++ W
Sbjct: 245 QELCILIDSYW 255
>gi|324504608|gb|ADY41989.1| Integrator complex subunit 11 [Ascaris suum]
Length = 588
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G ++K G E ++Y DFN +RHL ++ ++P ++I++T A + +R R+
Sbjct: 160 GAAMFLIKVGSESVIYTGDFNTTADRHLGAAHVEPGLKPDLLISETTYATTIRDSKRARE 219
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD 150
+ + + N G VL+ V GR EL +LE W D
Sbjct: 220 RDFLKKVHDCVANGGKVLIPVFALGRAQELCILLESYWERMD 261
>gi|408391611|gb|EKJ70983.1| hypothetical protein FPSE_08842 [Fusarium pseudograminearum CS3096]
Length = 963
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 15/113 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E G V+++ +PT +I +
Sbjct: 188 GTIWHI-QHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAEVIEQLRKPTALICSSRG 246
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
A Q R RDE+L+ I + G VL+ VD++ RVLEL+++LE WR
Sbjct: 247 ADRTAQPGGRTKRDEQLIDTIKACVTRGGTVLIPVDSSARVLELSYLLEHAWR 299
>gi|400602286|gb|EJP69888.1| RNA-metabolising metallo-beta-lactamase [Beauveria bassiana ARSEF
2860]
Length = 962
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 15/117 (12%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E G V+++ +PT +I +
Sbjct: 188 GTIWHI-QHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAQVIEQLRKPTALICSSRG 246
Query: 97 AI--YQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDS 151
A Q R RDE+L+ I + G VL+ VD++ RVLEL ++LE WR +
Sbjct: 247 AERNAQAGGRAKRDEQLLETIKAAVARGGTVLIPVDSSARVLELAYLLEHAWRTDSA 303
>gi|196007172|ref|XP_002113452.1| hypothetical protein TRIADDRAFT_57642 [Trichoplax adhaerens]
gi|190583856|gb|EDV23926.1| hypothetical protein TRIADDRAFT_57642 [Trichoplax adhaerens]
Length = 596
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 4/138 (2%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDF 68
S+ K K+ H+T +K D+ ++ G + G +VK G E ++Y D+
Sbjct: 123 SQMIKDCMKKVKAINLHQT-VKVDDDLEIKAYYAGHVL--GAAMFLVKVGCESVLYTGDY 179
Query: 69 NLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVA 128
N+ +RHL +D+ RP ++IT++ A + +R R+ +T + + + G VL+
Sbjct: 180 NMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLTKVHECVERGGKVLIP 238
Query: 129 VDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 239 VFALGRAQELCILLETYW 256
>gi|46138561|ref|XP_390971.1| hypothetical protein FG10795.1 [Gibberella zeae PH-1]
Length = 964
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 15/113 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E G V+++ +PT +I +
Sbjct: 188 GTIWHI-QHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAEVIEQLRKPTALICSSRG 246
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
A Q R RDE+L+ I + G VL+ VD++ RVLEL+++LE WR
Sbjct: 247 ADRTAQPGGRTKRDEQLIDTIKACVTRGGTVLIPVDSSARVLELSYLLEHAWR 299
>gi|209875817|ref|XP_002139351.1| RNA-metabolising metallo-beta-lactamase family protein
[Cryptosporidium muris RN66]
gi|209554957|gb|EEA05002.1| RNA-metabolising metallo-beta-lactamase family protein
[Cryptosporidium muris RN66]
Length = 797
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
V+ G E IVY D+N+ ++RHL + + P V+++++ A Y + RR+ +
Sbjct: 186 VEVGNESIVYTGDYNMVRDRHLGPASIKKLF-PDVLLSESTYATYIRPSRRSTERIFCEM 244
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
+LQ L G VL+ V GR EL +LE WR
Sbjct: 245 VLQCLEKGGKVLIPVFAVGRAQELCILLEFFWR 277
>gi|119576637|gb|EAW56233.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_b
[Homo sapiens]
Length = 329
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+K G E +VY D+N+ +RHL +D+ RP ++IT++ A + +R R+ +
Sbjct: 144 IKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKK 202
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ +T+ G VL+ V GR EL +LE W
Sbjct: 203 VHETVERGGKVLIPVFALGRAQELCILLETFW 234
>gi|340966678|gb|EGS22185.1| putative cleavage and polyadenylation protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 998
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 16/115 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC--------------VLDRFIRPTVVITDT 94
G IW I + G E IVY VD+N +E G V++ +PT ++ +
Sbjct: 191 GTIWHI-QHGLESIVYAVDWNQARENVFAGAAWLGGGHGAAVGTEVIEPLRKPTALVCSS 249
Query: 95 MSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+ R R RDE+L+ ++ + G VL+ VD++ RVLEL ++LE WR +
Sbjct: 250 RTPDAALPRAR-RDEQLLESVKLCIARGGTVLIPVDSSARVLELAYLLEHAWRTE 303
>gi|148683101|gb|EDL15048.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_a
[Mus musculus]
Length = 207
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 33 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 89
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 90 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 148
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 149 PVFALGRAQELCILLETFW 167
>gi|426327392|ref|XP_004024502.1| PREDICTED: integrator complex subunit 11 isoform 2 [Gorilla gorilla
gorilla]
Length = 606
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 128 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 184
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 185 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 243
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 244 PVFALGRAQELCILLETFW 262
>gi|397476278|ref|XP_003809534.1| PREDICTED: integrator complex subunit 11 isoform 2 [Pan paniscus]
Length = 606
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 128 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 184
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 185 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 243
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 244 PVFALGRAQELCILLETFW 262
>gi|354495797|ref|XP_003510015.1| PREDICTED: integrator complex subunit 11-like [Cricetulus griseus]
gi|344251677|gb|EGW07781.1| Integrator complex subunit 11 [Cricetulus griseus]
Length = 600
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|374253819|ref|NP_001243385.1| integrator complex subunit 11 isoform 1 [Homo sapiens]
gi|119576642|gb|EAW56238.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_f
[Homo sapiens]
Length = 606
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 128 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 184
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 185 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 243
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 244 PVFALGRAQELCILLETFW 262
>gi|395840791|ref|XP_003793235.1| PREDICTED: integrator complex subunit 11 isoform 1 [Otolemur
garnettii]
Length = 600
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|402852593|ref|XP_003891002.1| PREDICTED: integrator complex subunit 11 isoform 1 [Papio anubis]
gi|355557446|gb|EHH14226.1| hypothetical protein EGK_00111 [Macaca mulatta]
gi|387540112|gb|AFJ70683.1| integrator complex subunit 11 [Macaca mulatta]
Length = 600
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|158256210|dbj|BAF84076.1| unnamed protein product [Homo sapiens]
Length = 606
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 128 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 184
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 185 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 243
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 244 PVFALGRAQELCILLETFW 262
>gi|76559911|ref|NP_001029064.1| integrator complex subunit 11 [Rattus norvegicus]
gi|119371245|sp|Q3MHC2.1|INT11_RAT RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|75867808|gb|AAI05304.1| Cleavage and polyadenylation specific factor 3-like [Rattus
norvegicus]
Length = 600
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|380798915|gb|AFE71333.1| integrator complex subunit 11 isoform 2, partial [Macaca mulatta]
Length = 588
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 110 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 166
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 167 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 225
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 226 PVFALGRAQELCILLETFW 244
>gi|193786492|dbj|BAG51775.1| unnamed protein product [Homo sapiens]
Length = 606
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 128 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 184
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 185 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 243
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 244 PVFALGRAQELCILLETFW 262
>gi|444519369|gb|ELV12789.1| Integrator complex subunit 11 [Tupaia chinensis]
Length = 601
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 123 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 179
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 180 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 238
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 239 PVFALGRAQELCILLETFW 257
>gi|397476276|ref|XP_003809533.1| PREDICTED: integrator complex subunit 11 isoform 1 [Pan paniscus]
gi|410206788|gb|JAA00613.1| cleavage and polyadenylation specific factor 3-like [Pan
troglodytes]
gi|410251172|gb|JAA13553.1| cleavage and polyadenylation specific factor 3-like [Pan
troglodytes]
gi|410297680|gb|JAA27440.1| cleavage and polyadenylation specific factor 3-like [Pan
troglodytes]
gi|410349815|gb|JAA41511.1| cleavage and polyadenylation specific factor 3-like [Pan
troglodytes]
Length = 600
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|33300633|ref|NP_060341.2| integrator complex subunit 11 isoform 2 [Homo sapiens]
gi|118572557|sp|Q5TA45.2|INT11_HUMAN RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein; AltName: Full=Protein
related to CPSF subunits of 68 kDa; Short=RC-68
gi|14124912|gb|AAH07978.1| Cleavage and polyadenylation specific factor 3-like [Homo sapiens]
gi|60650138|tpg|DAA05669.1| TPA_exp: beta-lactamase fold protein family member RC-68 [Homo
sapiens]
gi|78100161|tpg|DAA05728.1| TPA_exp: integrator complex subunit 11 [Homo sapiens]
gi|119576636|gb|EAW56232.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_a
[Homo sapiens]
gi|119576638|gb|EAW56234.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_a
[Homo sapiens]
Length = 600
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|74220481|dbj|BAE31460.1| unnamed protein product [Mus musculus]
Length = 600
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|12053137|emb|CAB66747.1| hypothetical protein [Homo sapiens]
gi|49065540|emb|CAG38588.1| FLJ20542 [Homo sapiens]
gi|117645260|emb|CAL38096.1| hypothetical protein [synthetic construct]
gi|208966056|dbj|BAG73042.1| cleavage and polyadenylation specific factor 3-like [synthetic
construct]
Length = 600
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|343958192|dbj|BAK62951.1| protein related to CPSF subunits 68 kDa [Pan troglodytes]
Length = 600
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|330796066|ref|XP_003286090.1| hypothetical protein DICPUDRAFT_30371 [Dictyostelium purpureum]
gi|325083909|gb|EGC37349.1| hypothetical protein DICPUDRAFT_30371 [Dictyostelium purpureum]
Length = 468
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 5/131 (3%)
Query: 16 KKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERH 75
KK P+ H+T IK DE + ++ G + G K G+E +VY D+N+ +RH
Sbjct: 130 KKVIPI-DLHQT-IKVDEELSIKAYYAGHVL--GAAMFYAKVGDESVVYTGDYNMTPDRH 185
Query: 76 LNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRV 135
L +D+ ++P V+IT+T A + +R R+ + + + + G VL+ V GRV
Sbjct: 186 LGSAWIDQ-VKPDVLITETTYATTIRDSKRGRERDFLKRVHECVEKGGKVLIPVFALGRV 244
Query: 136 LELTHMLEQLW 146
EL +++ W
Sbjct: 245 QELCILIDSYW 255
>gi|56403864|emb|CAI29717.1| hypothetical protein [Pongo abelii]
Length = 600
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|149024842|gb|EDL81339.1| similar to RIKEN cDNA 2410006F12 [Rattus norvegicus]
Length = 601
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 123 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 179
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 180 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 238
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 239 PVFALGRAQELCILLETFW 257
>gi|21312614|ref|NP_082296.1| integrator complex subunit 11 [Mus musculus]
gi|81904239|sp|Q9CWS4.1|INT11_MOUSE RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|12845859|dbj|BAB26928.1| unnamed protein product [Mus musculus]
gi|26355309|dbj|BAC41135.1| unnamed protein product [Mus musculus]
gi|74192536|dbj|BAE43054.1| unnamed protein product [Mus musculus]
gi|74219576|dbj|BAE29558.1| unnamed protein product [Mus musculus]
gi|148683102|gb|EDL15049.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_b
[Mus musculus]
Length = 600
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|348551496|ref|XP_003461566.1| PREDICTED: integrator complex subunit 11 [Cavia porcellus]
Length = 600
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|296206477|ref|XP_002750225.1| PREDICTED: integrator complex subunit 11 isoform 1 [Callithrix
jacchus]
Length = 600
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|224079882|ref|XP_002197797.1| PREDICTED: integrator complex subunit 11 [Taeniopygia guttata]
Length = 600
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ DE ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDEELEIKAY-YAGHVLGAAMFQI-KVGCESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|118572558|sp|Q5NVE6.2|INT11_PONAB RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
Length = 600
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|338722203|ref|XP_001496423.3| PREDICTED: integrator complex subunit 11 [Equus caballus]
Length = 571
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 93 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 149
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 150 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 208
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 209 PVFALGRAQELCILLETFW 227
>gi|426327390|ref|XP_004024501.1| PREDICTED: integrator complex subunit 11 isoform 1 [Gorilla gorilla
gorilla]
Length = 600
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|346327110|gb|EGX96706.1| cleavage and polyadenylylation specificity factor, putative
[Cordyceps militaris CM01]
Length = 1024
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 15/117 (12%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E G V+++ +PT +I +
Sbjct: 222 GTIWHI-QHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAQVIEQLRKPTALICSSRG 280
Query: 97 AI--YQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDS 151
A Q R RDE+L+ I + G VL+ VD++ RVLEL ++LE WR +
Sbjct: 281 AERNAQAGGRAKRDEQLLETIKAAVARGGTVLIPVDSSARVLELAYLLEHAWRTDSA 337
>gi|67624341|ref|XP_668453.1| ENSANGP00000013258 [Cryptosporidium hominis TU502]
gi|54659666|gb|EAL38233.1| ENSANGP00000013258 [Cryptosporidium hominis]
Length = 750
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
V+ +E IVY DFN+ ++RHL ++ + + P+++I+++ A Y + RR+ +
Sbjct: 185 VQVSDESIVYTGDFNMVRDRHLGPALIPKLL-PSLLISESTYATYIRPSRRSTERTFCEM 243
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
+ L+ G VL+ V GR EL +LE WR
Sbjct: 244 VYSCLKRGGKVLIPVFAIGRAQELCILLEIYWR 276
>gi|452840080|gb|EME42018.1| hypothetical protein DOTSEDRAFT_133466 [Dothistroma septosporum
NZE10]
Length = 1101
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 24/120 (20%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC--------VLDRFIRPTVVI--------T 92
G IW I + G E IVY D+N +E L+G +++ RPT ++ T
Sbjct: 186 GTIWHI-QHGLESIVYAADWNQGRENLLSGAAWLGTSSEIIEPLRRPTALVCSSKGVQKT 244
Query: 93 DTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSG 152
DT+ R+ RDE L++ I +T+ G VL+ D++ RVLEL +L WR +G
Sbjct: 245 DTLP-------RKKRDELLVSLIRETVAQGGKVLIPTDSSARVLELAFILNHTWRENITG 297
>gi|426327394|ref|XP_004024503.1| PREDICTED: integrator complex subunit 11 isoform 3 [Gorilla gorilla
gorilla]
Length = 571
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 93 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 149
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 150 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 208
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 209 PVFALGRAQELCILLETFW 227
>gi|119576645|gb|EAW56241.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_h
[Homo sapiens]
Length = 123
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+K G E +VY D+N+ +RHL +D+ RP ++IT++ A + +R R+ +
Sbjct: 4 IKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKK 62
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ +T+ G VL+ V GR EL +LE W
Sbjct: 63 VHETVERGGKVLIPVFALGRAQELCILLETFW 94
>gi|74198351|dbj|BAE39661.1| unnamed protein product [Mus musculus]
Length = 600
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|403297740|ref|XP_003939710.1| PREDICTED: integrator complex subunit 11 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 499
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 42 YGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQ 101
Y + +++I K G E +VY D+N+ +RHL +D+ RP ++IT++ A +
Sbjct: 53 YAGHVLGAAMFQI-KVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYATTIR 110
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+R R+ + + +T+ + G VL+ V GR EL +LE W
Sbjct: 111 DSKRCRERDFLKKVHETVEHGGKVLIPVFALGRAQELCILLETFW 155
>gi|61098197|ref|NP_001012854.1| integrator complex subunit 11 [Gallus gallus]
gi|75571225|sp|Q5ZIH0.1|INT11_CHICK RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|53135966|emb|CAG32473.1| hypothetical protein RCJMB04_26e19 [Gallus gallus]
Length = 600
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ DE ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDEELEIKAY-YAGHVLGAAMFQI-KVGCESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|66357778|ref|XP_626067.1| CPSF metallobeta-lactamase [Cryptosporidium parvum Iowa II]
gi|46227299|gb|EAK88249.1| CPSF metallobeta-lactamase [Cryptosporidium parvum Iowa II]
Length = 751
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
V+ +E IVY DFN+ ++RHL ++ + + P+++I+++ A Y + RR+ +
Sbjct: 187 VQVSDESIVYTGDFNMVRDRHLGPALIPKLL-PSLLISESTYATYIRPSRRSTERTFCEM 245
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
+ L+ G VL+ V GR EL +LE WR
Sbjct: 246 VYSCLKRGGKVLIPVFAIGRAQELCILLEIYWR 278
>gi|197099184|ref|NP_001124760.1| integrator complex subunit 11 [Pongo abelii]
gi|55725797|emb|CAH89679.1| hypothetical protein [Pongo abelii]
Length = 655
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|326932364|ref|XP_003212289.1| PREDICTED: integrator complex subunit 11-like [Meleagris gallopavo]
Length = 600
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ DE ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDEELEIKAY-YAGHVLGAAMFQI-KVGCESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|374253821|ref|NP_001243389.1| integrator complex subunit 11 isoform 3 [Homo sapiens]
gi|194386866|dbj|BAG59799.1| unnamed protein product [Homo sapiens]
Length = 571
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 93 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 149
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 150 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 208
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 209 PVFALGRAQELCILLETFW 227
>gi|351697497|gb|EHB00416.1| Integrator complex subunit 11 [Heterocephalus glaber]
Length = 672
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 42 YGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQ 101
Y + +++I K G E +VY D+N+ +RHL +D+ RP ++IT++ A +
Sbjct: 227 YAGHVLGAAMFQI-KVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYATTIR 284
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+R R+ + + +T+ G VL+ V GR EL +LE W
Sbjct: 285 DSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFW 329
>gi|449268484|gb|EMC79348.1| Integrator complex subunit 11 [Columba livia]
Length = 600
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ DE ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDEELEIKAY-YAGHVLGAAMFQI-KVGCESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|297279172|ref|XP_001092173.2| PREDICTED: integrator complex subunit 11 isoform 3 [Macaca mulatta]
Length = 579
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 101 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 157
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 158 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 216
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 217 PVFALGRAQELCILLETFW 235
>gi|281348165|gb|EFB23749.1| hypothetical protein PANDA_020173 [Ailuropoda melanoleuca]
Length = 591
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 113 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 169
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +DR RP ++IT++ A + +R R+ + + + + G VL+
Sbjct: 170 YNMTPDRHLGAAWIDR-CRPNLLITESTYATTIRDSKRCRERDFLKKVHEAVERGGKVLI 228
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 229 PVFALGRAQELCILLETFW 247
>gi|301788922|ref|XP_002929872.1| PREDICTED: integrator complex subunit 11-like [Ailuropoda
melanoleuca]
Length = 600
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +DR RP ++IT++ A + +R R+ + + + + G VL+
Sbjct: 179 YNMTPDRHLGAAWIDR-CRPNLLITESTYATTIRDSKRCRERDFLKKVHEAVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|428177137|gb|EKX46018.1| hypothetical protein GUITHDRAFT_70813 [Guillardia theta CCMP2712]
Length = 485
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
++ G++ I+Y D+N+ +RHL D+ +RP ++IT++ A + +R R+ ++
Sbjct: 167 IRVGQQSILYTGDYNMTPDRHLGSARCDK-LRPDLLITESTYATTIRESKRWRERDMLNQ 225
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + +RN G VL+ V GR EL +L+ W
Sbjct: 226 VSECVRNGGKVLIPVFALGRAQELCLLLDAFW 257
>gi|15029864|gb|AAH11155.1| Cleavage and polyadenylation specific factor 3-like [Mus musculus]
Length = 600
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 42 YGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQ 101
Y + +++I K G E +VY D+N+ +RHL +D+ RP ++IT++ A +
Sbjct: 154 YAGHVLGAAMFQI-KVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYATTIR 211
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+R R+ + + +T+ G VL+ V GR EL +LE W
Sbjct: 212 DSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFW 256
>gi|388853919|emb|CCF52417.1| uncharacterized protein [Ustilago hordei]
Length = 1033
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 17/115 (14%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVL-----------------DRFIRPTVVI 91
G IWKI +V +D+N +ERHL+G +L D RP ++I
Sbjct: 230 GAIWKIRSPTSGTVVVALDWNHNRERHLDGTILLSSSAAAPGAPGSGSGSDAVRRPDLLI 289
Query: 92 TDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
T+ + RR+ RD L+ + T++ ++L +D + R+LEL +L+Q W
Sbjct: 290 TEIERGLVTNTRRKDRDAALIDLVHTTIQAGNSLLFPIDASARLLELMVLLDQHW 344
>gi|395840793|ref|XP_003793236.1| PREDICTED: integrator complex subunit 11 isoform 2 [Otolemur
garnettii]
Length = 499
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 42 YGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQ 101
Y + +++I K G E +VY D+N+ +RHL +D+ RP ++IT++ A +
Sbjct: 53 YAGHVLGAAMFQI-KVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYATTIR 110
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+R R+ + + +T+ G VL+ V GR EL +LE W
Sbjct: 111 DSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFW 155
>gi|332862132|ref|XP_001152447.2| PREDICTED: LOW QUALITY PROTEIN: integrator complex subunit 11,
partial [Pan troglodytes]
Length = 332
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 42 YGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQ 101
Y + +++I K G E +VY D+N+ +RHL +D+ RP ++IT++ A +
Sbjct: 16 YAGHVLGAAMFQI-KVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYATTIR 73
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+R R+ + + +T+ G VL+ V GR EL +LE W
Sbjct: 74 DSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFW 118
>gi|326435554|gb|EGD81124.1| integrator complex subunit 11 [Salpingoeca sp. ATCC 50818]
Length = 620
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
V+ G++ +VY D+N+ +RHL +D F +P +IT++ A + +R R+ +T
Sbjct: 199 VRVGDKSVVYTGDYNMTPDRHLGTAWID-FCQPDAIITESTYATTIRDSKRCRERDFLTK 257
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + ++N G VL+ V GR EL +LE W
Sbjct: 258 VHRCVKNGGKVLIPVFALGRAQELCILLETYW 289
>gi|426327398|ref|XP_004024505.1| PREDICTED: integrator complex subunit 11 isoform 5 [Gorilla gorilla
gorilla]
Length = 502
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 42 YGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQ 101
Y + +++I K G E +VY D+N+ +RHL +D+ RP ++IT++ A +
Sbjct: 56 YAGHVLGAAMFQI-KVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYATTIR 113
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+R R+ + + +T+ G VL+ V GR EL +LE W
Sbjct: 114 DSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFW 158
>gi|402852595|ref|XP_003891003.1| PREDICTED: integrator complex subunit 11 isoform 2 [Papio anubis]
Length = 499
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 42 YGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQ 101
Y + +++I K G E +VY D+N+ +RHL +D+ RP ++IT++ A +
Sbjct: 53 YAGHVLGAAMFQI-KVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYATTIR 110
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+R R+ + + +T+ G VL+ V GR EL +LE W
Sbjct: 111 DSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFW 155
>gi|426327396|ref|XP_004024504.1| PREDICTED: integrator complex subunit 11 isoform 4 [Gorilla gorilla
gorilla]
Length = 499
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 42 YGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQ 101
Y + +++I K G E +VY D+N+ +RHL +D+ RP ++IT++ A +
Sbjct: 53 YAGHVLGAAMFQI-KVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYATTIR 110
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+R R+ + + +T+ G VL+ V GR EL +LE W
Sbjct: 111 DSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFW 155
>gi|302415331|ref|XP_003005497.1| cleavage and polyadenylation specificity factor subunit 2
[Verticillium albo-atrum VaMs.102]
gi|261354913|gb|EEY17341.1| cleavage and polyadenylation specificity factor subunit 2
[Verticillium albo-atrum VaMs.102]
Length = 739
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 15/113 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E G V+++ +PT +I +
Sbjct: 155 GTIWHI-QHGLESIVYAVDWNQARENVFAGAAWLGGAGAGGAEVIEQLRKPTALICSSRG 213
Query: 97 AI--YQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
A RR RDE+L+ I + G VL+ D++GRVLEL ++LE WR
Sbjct: 214 ADRNAPSGGRRKRDEQLIDMIKLCVSRGGTVLIPADSSGRVLELAYLLEHAWR 266
>gi|397476280|ref|XP_003809535.1| PREDICTED: integrator complex subunit 11 isoform 3 [Pan paniscus]
Length = 499
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 42 YGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQ 101
Y + +++I K G E +VY D+N+ +RHL +D+ RP ++IT++ A +
Sbjct: 53 YAGHVLGAAMFQI-KVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYATTIR 110
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+R R+ + + +T+ G VL+ V GR EL +LE W
Sbjct: 111 DSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFW 155
>gi|361125691|gb|EHK97723.1| putative Cleavage factor two protein 2 [Glarea lozoyensis 74030]
Length = 835
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 19/127 (14%)
Query: 47 FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDT 94
G IW+I + G E IVY VD+N +E L+G V+++ +PT +I +
Sbjct: 64 LGGTIWQI-QAGLESIVYAVDWNQSRENILSGAAWLGGAGGGGAEVIEQLRKPTALICSS 122
Query: 95 MSA--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR----N 148
+ ++ RDE L+ NI + G VL+ D++ RVLEL ++LE WR +
Sbjct: 123 KGGEKVAIAGGKKKRDELLLDNIKSCVSKGGIVLIPTDSSARVLELAYLLEHAWREDAES 182
Query: 149 KDSGLVS 155
DS L+S
Sbjct: 183 DDSTLMS 189
>gi|34783058|gb|AAH00675.2| CPSF3L protein, partial [Homo sapiens]
Length = 473
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 42 YGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQ 101
Y + +++I K G E +VY D+N+ +RHL +D+ RP ++IT++ A +
Sbjct: 27 YAGHVLGAAMFQI-KVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYATTIR 84
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+R R+ + + +T+ G VL+ V GR EL +LE W
Sbjct: 85 DSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFW 129
>gi|119576647|gb|EAW56243.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_i
[Homo sapiens]
Length = 502
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 42 YGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQ 101
Y + +++I K G E +VY D+N+ +RHL +D+ RP ++IT++ A +
Sbjct: 56 YAGHVLGAAMFQI-KVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYATTIR 113
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+R R+ + + +T+ G VL+ V GR EL +LE W
Sbjct: 114 DSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFW 158
>gi|374253826|ref|NP_001243391.1| integrator complex subunit 11 isoform 4 [Homo sapiens]
Length = 502
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 42 YGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQ 101
Y + +++I K G E +VY D+N+ +RHL +D+ RP ++IT++ A +
Sbjct: 56 YAGHVLGAAMFQI-KVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYATTIR 113
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+R R+ + + +T+ G VL+ V GR EL +LE W
Sbjct: 114 DSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFW 158
>gi|296206479|ref|XP_002750226.1| PREDICTED: integrator complex subunit 11 isoform 2 [Callithrix
jacchus]
Length = 499
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 42 YGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQ 101
Y + +++I K G E +VY D+N+ +RHL +D+ RP ++IT++ A +
Sbjct: 53 YAGHVLGAAMFQI-KVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYATTIR 110
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+R R+ + + +T+ G VL+ V GR EL +LE W
Sbjct: 111 DSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFW 155
>gi|119576641|gb|EAW56237.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_e
[Homo sapiens]
Length = 578
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+K G E +VY D+N+ +RHL +D+ RP ++IT++ A + +R R+ +
Sbjct: 144 IKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKK 202
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ +T+ G VL+ V GR EL +LE W
Sbjct: 203 VHETVERGGKVLIPVFALGRAQELCILLETFW 234
>gi|374253828|ref|NP_001243392.1| integrator complex subunit 11 isoform 5 [Homo sapiens]
gi|119576639|gb|EAW56235.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_c
[Homo sapiens]
gi|119576644|gb|EAW56240.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_c
[Homo sapiens]
Length = 499
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 42 YGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQ 101
Y + +++I K G E +VY D+N+ +RHL +D+ RP ++IT++ A +
Sbjct: 53 YAGHVLGAAMFQI-KVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYATTIR 110
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+R R+ + + +T+ G VL+ V GR EL +LE W
Sbjct: 111 DSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFW 155
>gi|119576648|gb|EAW56244.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_j
[Homo sapiens]
Length = 476
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 42 YGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQ 101
Y + +++I K G E +VY D+N+ +RHL +D+ RP ++IT++ A +
Sbjct: 30 YAGHVLGAAMFQI-KVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYATTIR 87
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+R R+ + + +T+ G VL+ V GR EL +LE W
Sbjct: 88 DSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFW 132
>gi|343429654|emb|CBQ73226.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 1039
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 17/115 (14%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVL-----------------DRFIRPTVVI 91
G +WKI +V +D+N +ERHL+G +L D RP ++I
Sbjct: 249 GAVWKIRSPTSGTVVIALDWNHNRERHLDGTILLSSSAAAPGAPGAASGADAVRRPDLLI 308
Query: 92 TDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
T+ + RR+ RD L+ + T++ ++L +D + R+LEL +L+Q W
Sbjct: 309 TEIERGLVVNTRRKDRDAALIDLVHTTIQAGHSLLFPIDASARLLELMVLLDQHW 363
>gi|159465769|ref|XP_001691095.1| predicted protein [Chlamydomonas reinhardtii]
gi|158279781|gb|EDP05541.1| predicted protein [Chlamydomonas reinhardtii]
Length = 389
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 5/101 (4%)
Query: 49 GPIWKIVKEGE-EEIVYGVDFNLKKERHLNGCVLD---RFIRPTVVITDTMSAIYQQAR- 103
G +W++ G +E+VY VDFN +KER LN ++P ++I D ++ + A
Sbjct: 174 GAVWRLTLLGSGQEVVYAVDFNHRKERLLNETTFTTALAALQPALLIGDAVNGLAPPAPP 233
Query: 104 RRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQ 144
R RDE + I T+ GNVL+ D AGRVLEL +L++
Sbjct: 234 RHKRDEEFLDAITATVEGEGNVLIPTDAAGRVLELALLLDE 274
>gi|327351648|gb|EGE80505.1| cleavage and polyadenylation specificity factor [Ajellomyces
dermatitidis ATCC 18188]
Length = 983
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 15/113 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E I+Y VD+N +E + G V+++ +PT + T
Sbjct: 162 GTIWHI-QHGMESIIYAVDWNQARENVIAGAAWFGGSGASGTEVVEQLRKPTAFVCSTRG 220
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
+ R+ RD+ L+ I + G VL+ DT+ RVLEL ++LE WR
Sbjct: 221 GDKLSLLGGRKRRDDLLLDMIRSSFSKGGTVLIPTDTSARVLELAYVLEHAWR 273
>gi|239610975|gb|EEQ87962.1| cleavage and polyadenylation specificity factor [Ajellomyces
dermatitidis ER-3]
Length = 983
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 15/113 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E I+Y VD+N +E + G V+++ +PT + T
Sbjct: 162 GTIWHI-QHGMESIIYAVDWNQARENVIAGAAWFGGSGASGTEVVEQLRKPTAFVCSTRG 220
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
+ R+ RD+ L+ I + G VL+ DT+ RVLEL ++LE WR
Sbjct: 221 GDKLSLLGGRKRRDDLLLDMIRSSFSKGGTVLIPTDTSARVLELAYVLEHAWR 273
>gi|380480161|emb|CCF42595.1| RNA-metabolising metallo-beta-lactamase [Colletotrichum
higginsianum]
Length = 979
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 57/113 (50%), Gaps = 15/113 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N KE G V+++ +PT ++ +
Sbjct: 188 GTIWHI-QHGLESIVYAVDWNQAKENVFAGAAWLGGAGGGGAEVIEQLRKPTALVCSSRG 246
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
A + Q R RDE+L+ I + G LV VD++ RVLE+ ++LE WR
Sbjct: 247 AEKVAQAGGRAKRDEQLVDMIKTCVSRGGTALVPVDSSARVLEIAYLLEHAWR 299
>gi|405958713|gb|EKC24813.1| Integrator complex subunit 11 [Crassostrea gigas]
Length = 575
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S K+ K+ + HETK + DE ++ Y + ++ I K G++ +VY D
Sbjct: 95 TSEMIKNCMKKVVVVNLHETK-QVDEELEIKAY-YAGHVLGAAMFHI-KVGQQSVVYTGD 151
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + + G VL+
Sbjct: 152 YNMTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLKKVHDCVEKGGKVLI 210
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 211 PVFALGRAQELCILLESYW 229
>gi|207079923|ref|NP_001128922.1| DKFZP459J1110 protein [Pongo abelii]
gi|56403907|emb|CAI29738.1| hypothetical protein [Pongo abelii]
Length = 600
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT + A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPNLLITGSTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|321257420|ref|XP_003193582.1| cleavage and polyadenylation specificity factor subunit
[Cryptococcus gattii WM276]
gi|317460052|gb|ADV21795.1| Cleavage and polyadenylation specificity factor subunit, putative
[Cryptococcus gattii WM276]
Length = 900
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCV---------LDRFIRPTVVITDTMSAIY 99
G ++KI ++Y V N ERHL+G V +D +RP ++I + ++
Sbjct: 183 GSLFKIRSPTSGTVLYAVGVNHTSERHLDGMVGVQNGPTGYVDGVLRPDLLIVEGGRSMV 242
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+R+ R+ L+ I TL +N +VL+ VD + R+LEL +L+Q W K
Sbjct: 243 INPKRKEREAALIDTITSTLESNHSVLLPVDPSPRLLELMVLLDQHWTFK 292
>gi|223647718|gb|ACN10617.1| Integrator complex subunit 11 [Salmo salar]
Length = 343
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+K G E +VY D+N+ +RHL +D+ RP ++I+++ A + +R R+ +
Sbjct: 166 IKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPDILISESTYATTIRDSKRCRERDFLKK 224
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ +T+ G VL+ V GR EL +LE W
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFW 256
>gi|346976151|gb|EGY19603.1| cleavage and polyadenylation specificity factor subunit 2
[Verticillium dahliae VdLs.17]
Length = 972
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 15/113 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E G V+++ +PT +I +
Sbjct: 189 GTIWHI-QHGLESIVYAVDWNQARENVFAGAAWLGGAGAGGAEVIEQLRKPTALICSSRG 247
Query: 97 AI--YQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
A RR RDE+L+ I + G VL+ D++GRVLEL ++LE WR
Sbjct: 248 ADRNAPSGGRRKRDEQLIDMIKLCVSRGGTVLIPADSSGRVLELAYLLEHAWR 300
>gi|58266278|ref|XP_570295.1| cleavage and polyadenylation specificity factor subunit
[Cryptococcus neoformans var. neoformans JEC21]
gi|134111080|ref|XP_775682.1| hypothetical protein CNBD4110 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258346|gb|EAL21035.1| hypothetical protein CNBD4110 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226528|gb|AAW42988.1| cleavage and polyadenylation specificity factor subunit, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 899
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCV---------LDRFIRPTVVITDTMSAIY 99
G ++KI ++Y V N ERHL+G V D +RP ++I + ++
Sbjct: 182 GSLFKIRSPTSGTVLYAVGINHTSERHLDGMVGVQNGPTGYADGVLRPDLLIVEGGRSMV 241
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+R+ R+ L+ I TL +N +VL+ VD + R+LEL +L+Q W K
Sbjct: 242 VNPKRKEREAALIDTITSTLESNHSVLLPVDPSPRLLELMILLDQHWTFK 291
>gi|310799284|gb|EFQ34177.1| RNA-metabolising metallo-beta-lactamase [Glomerella graminicola
M1.001]
Length = 984
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 15/113 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N KE G V+++ +PT ++ +
Sbjct: 188 GTIWHI-QHGLESIVYAVDWNQAKENVFAGAAWLGGAGGGGADVIEQLRKPTALVCSSRG 246
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
A + Q R RDE+L+ I + G L+ VD++ RVLE+ ++LE WR
Sbjct: 247 AEKVAQAGGRAKRDEQLIDMIKTCVARGGTALIPVDSSARVLEIAYLLEHAWR 299
>gi|340518710|gb|EGR48950.1| predicted protein [Trichoderma reesei QM6a]
Length = 962
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 15/114 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E G V+++ +PT +I +
Sbjct: 188 GTIWHI-QHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAEVIEQLRKPTALICSSRG 246
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
A Q R RDE L+ I + G VL+ VD++ RVLE++++LE WR
Sbjct: 247 ADRTAQAGGRAKRDEHLLEMIKTCVSRGGTVLIPVDSSARVLEISYLLEHAWRT 300
>gi|395518397|ref|XP_003763348.1| PREDICTED: integrator complex subunit 11 [Sarcophilus harrisii]
Length = 393
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+K G E VY D+N+ +RHL +D+ RP ++IT++ A + +R R+ +
Sbjct: 166 IKVGSESAVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKK 224
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ +T+ G VL+ V GR EL +LE W
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFW 256
>gi|432866809|ref|XP_004070946.1| PREDICTED: integrator complex subunit 11-like [Oryzias latipes]
Length = 599
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ G + ++ +K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVPLNLHQT-VQVDDELEIKAYYAGHVLGAAMVY--IKVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++I+++ A + +R R+ + + +++ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPDILISESTYATTIRDSKRCRERDFLKKVHESIERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|320034772|gb|EFW16715.1| cleavage and polyadenylylation specificity factor [Coccidioides
posadasii str. Silveira]
Length = 1026
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 15/118 (12%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E + G V+++ +PT ++
Sbjct: 208 GTIWHI-QHGMESIVYAVDWNQARENVIAGAAWFGSSGANRTDVIEQLRKPTALVCSAKG 266
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSG 152
R+ RD+ L+ I + G VL+ DT+ RVLEL ++LE WR +G
Sbjct: 267 GDKFAPGGGRKKRDDLLLDMIRSCIAKKGTVLLPTDTSARVLELAYVLEHAWREAANG 324
>gi|301618510|ref|XP_002938656.1| PREDICTED: integrator complex subunit 11 isoform 1 [Xenopus
(Silurana) tropicalis]
gi|301618512|ref|XP_002938657.1| PREDICTED: integrator complex subunit 11 isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 600
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVNLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++I+++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHETVEKGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|66472504|ref|NP_001018457.1| integrator complex subunit 11 [Danio rerio]
gi|82192739|sp|Q503E1.1|INT11_DANRE RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|63102425|gb|AAH95364.1| Zgc:110671 [Danio rerio]
Length = 598
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+K G E +VY D+N+ +RHL +D+ RP ++I+++ A + +R R+ +
Sbjct: 166 IKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPDILISESTYATTIRDSKRCRERDFLKK 224
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ +T+ G VL+ V GR EL +LE W
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFW 256
>gi|449299688|gb|EMC95701.1| hypothetical protein BAUCODRAFT_71003 [Baudoinia compniacensis UAMH
10762]
Length = 938
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 41 AYGE-EIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGC--------VLDRFIRPTVVI 91
AYG G +W I ++G E IVY D+N +E L G +++ RPT +I
Sbjct: 177 AYGAGHTLGGTVWHI-QQGLESIVYAADWNQGRENLLPGAALLSGGQEIIEPLQRPTALI 235
Query: 92 TDTMSAIYQQAR-RRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD 150
+ Q++ R+ RD L++ + T+ G VL+ D++ R+LEL +L + W+
Sbjct: 236 CSSKGVEKAQSQSRKDRDGMLLSLVRDTIAQGGKVLIPTDSSARMLELAFLLNEAWKENL 295
Query: 151 SG 152
G
Sbjct: 296 DG 297
>gi|405120276|gb|AFR95047.1| cleavage and polyadenylation specificity factor subunit
[Cryptococcus neoformans var. grubii H99]
Length = 899
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCV---------LDRFIRPTVVITDTMSAIY 99
G ++KI ++Y V N ERHL+G V D +RP ++I + ++
Sbjct: 182 GSLFKIRSPTSGTVLYAVGVNHTSERHLDGMVGVQNGPTGYADGVLRPDLLIAEGGRSMV 241
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+R+ R+ L+ I TL +N +VL+ VD + R+LEL +L+Q W K
Sbjct: 242 VNPKRKEREAALIDTITSTLESNHSVLLPVDPSPRLLELMILLDQHWTFK 291
>gi|355680857|gb|AER96662.1| cleavage and polyadenylation specific factor 3-like protein
[Mustela putorius furo]
Length = 440
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 131 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 187
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + + + G VL+
Sbjct: 188 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHEAVERGGKVLI 246
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 247 PVFALGRAQELCILLETFW 265
>gi|410989914|ref|XP_004001198.1| PREDICTED: LOW QUALITY PROTEIN: integrator complex subunit 11
[Felis catus]
Length = 598
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + + + G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHEAVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|303310723|ref|XP_003065373.1| hypothetical protein CPC735_045980 [Coccidioides posadasii C735
delta SOWgp]
gi|240105035|gb|EER23228.1| hypothetical protein CPC735_045980 [Coccidioides posadasii C735
delta SOWgp]
Length = 1026
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 15/118 (12%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E + G V+++ +PT ++
Sbjct: 208 GTIWHI-QHGMESIVYAVDWNQARENVIAGAAWFGSSGANRTDVIEQLRKPTALVCSAKG 266
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSG 152
R+ RD+ L+ I + G VL+ DT+ RVLEL ++LE WR G
Sbjct: 267 GDKFAPGGGRKKRDDLLLDMIRSCIAKKGTVLLPTDTSARVLELAYVLEHAWREAADG 324
>gi|334321967|ref|XP_001364674.2| PREDICTED: integrator complex subunit 11-like [Monodelphis
domestica]
Length = 600
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESAVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|359319514|ref|XP_003639102.1| PREDICTED: integrator complex subunit 11-like [Canis lupus
familiaris]
Length = 600
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + + + G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHEAVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|71017515|ref|XP_758988.1| hypothetical protein UM02841.1 [Ustilago maydis 521]
gi|46098766|gb|EAK83999.1| hypothetical protein UM02841.1 [Ustilago maydis 521]
Length = 979
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 18/116 (15%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVL------------------DRFIRPTVV 90
G +WKI +V +D+N +ERHL+G +L D RP ++
Sbjct: 240 GAVWKIRSPTSGTVVIALDWNHNRERHLDGTILLSSSAAAPGAPGSGASASDAVRRPDLL 299
Query: 91 ITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
IT+ + RR+ RD L+ + T++ ++L VD + R+LEL +L+Q W
Sbjct: 300 ITEIERGLVVNTRRKDRDAALIDLVHTTIQAGNSLLFPVDASARLLELMVLLDQHW 355
>gi|295659367|ref|XP_002790242.1| cleavage and polyadenylation specific factor 2 [Paracoccidioides
sp. 'lutzii' Pb01]
gi|226281947|gb|EEH37513.1| cleavage and polyadenylation specific factor 2 [Paracoccidioides
sp. 'lutzii' Pb01]
Length = 999
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 15/113 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E I+Y VD+N +E + G V+++ +PT ++ T
Sbjct: 202 GTIWHI-QHGMESIIYAVDWNQARENVIAGASWFGGSGGSGTEVVEQLRKPTALVCSTRG 260
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
+ R+ RD+ L+ + G VL+ +DT+ RVLEL ++LE WR
Sbjct: 261 GDKLVLSGGRKRRDDLLLDMLRSCFSKGGTVLIPMDTSARVLELAYVLEHAWR 313
>gi|226288011|gb|EEH43524.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 999
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 15/113 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E I+Y VD+N +E + G V+++ +PT ++ T
Sbjct: 202 GTIWHI-QHGMESIIYAVDWNQARENVIAGAAWFGGSGGSGTEVVEQLRKPTALVCSTRG 260
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
+ R+ RD+ L+ + G VL+ +DT+ RVLEL ++LE WR
Sbjct: 261 GDKLALSGGRKRRDDLLLDMLRSCFSKGGTVLIPMDTSARVLELAYVLEHAWR 313
>gi|119195099|ref|XP_001248153.1| hypothetical protein CIMG_01924 [Coccidioides immitis RS]
Length = 1015
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 15/118 (12%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E + G V+++ +PT ++
Sbjct: 197 GTIWHI-QHGMESIVYAVDWNQARENVIAGAAWFGSSGANRTDVIEQLRKPTALVCSAKG 255
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSG 152
R+ RD+ L+ I + G VL+ DT+ RVLEL ++LE WR G
Sbjct: 256 GDKFAPGGGRKKRDDLLLDMIRSCIARKGTVLLPTDTSARVLELAYVLEHAWREAADG 313
>gi|358394479|gb|EHK43872.1| hypothetical protein TRIATDRAFT_79096 [Trichoderma atroviride IMI
206040]
Length = 957
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 57/113 (50%), Gaps = 15/113 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E G V+++ +PT +I +
Sbjct: 188 GTIWHI-QHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAEVIEQLRKPTALICSSRG 246
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
A Q R RDE L+ I + G VL+ VD++ RVLE++++LE WR
Sbjct: 247 ADKSAQAGGRAKRDEHLIDMIKSCVSRGGTVLIPVDSSARVLEISYLLENAWR 299
>gi|156403103|ref|XP_001639929.1| predicted protein [Nematostella vectensis]
gi|156227060|gb|EDO47866.1| predicted protein [Nematostella vectensis]
Length = 527
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H++ IK D+ ++ G + G + ++ G E +VY D
Sbjct: 93 TSQMIKDCMKKVVPINLHQS-IKVDDELEIKAYYAGHVL--GAVMFHMRVGTESVVYTGD 149
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 150 YNMTPDRHLGSAWIDK-CRPDILITESTYATTIRDSKRCRERDFLKKVHETMEKGGKVLI 208
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 209 PVFALGRAQELCILLETYW 227
>gi|392862603|gb|EAS36741.2| cleavage and polyadenylylation specificity factor [Coccidioides
immitis RS]
Length = 1026
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 15/118 (12%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E + G V+++ +PT ++
Sbjct: 208 GTIWHI-QHGMESIVYAVDWNQARENVIAGAAWFGSSGANRTDVIEQLRKPTALVCSAKG 266
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSG 152
R+ RD+ L+ I + G VL+ DT+ RVLEL ++LE WR G
Sbjct: 267 GDKFAPGGGRKKRDDLLLDMIRSCIARKGTVLLPTDTSARVLELAYVLEHAWREAADG 324
>gi|225679068|gb|EEH17352.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 984
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 15/113 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E I+Y VD+N +E + G V+++ +PT ++ T
Sbjct: 162 GTIWHI-QHGMESIIYAVDWNQARENVIAGAAWFGGSGGSGTEVVEQLRKPTALVCSTRG 220
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
+ R+ RD+ L+ + G VL+ +DT+ RVLEL ++LE WR
Sbjct: 221 GDKLALSGGRKRRDDLLLDMLRSCFSKGGTVLIPMDTSARVLELAYVLEHAWR 273
>gi|443694305|gb|ELT95478.1| hypothetical protein CAPTEDRAFT_151615 [Capitella teleta]
Length = 600
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 4/138 (2%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDF 68
S KS K+ H+T I+ D+ ++ G + I ++ GE+ +VY D+
Sbjct: 123 SEMIKSCMKKTIAMNLHQT-IQVDDELEIKAYYAGHVLGAAMIH--IRVGEQSVVYTGDY 179
Query: 69 NLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVA 128
N+ +RHL +DR RP ++IT++ A + +R R+ + + + G VL+
Sbjct: 180 NMTPDRHLGAAWIDR-CRPDLLITESTYATTIRDSKRCRERDFLKKVHDAVDKGGKVLIP 238
Query: 129 VDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 239 VFALGRAQELCILLETYW 256
>gi|348503157|ref|XP_003439132.1| PREDICTED: integrator complex subunit 11-like [Oreochromis
niloticus]
Length = 601
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+K G E +VY D+N+ +RHL +D+ RP ++I+++ A + +R R+ +
Sbjct: 166 IKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPDILISESTYATTIRDSKRCRERDFLKK 224
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ +++ G VL+ V GR EL +LE W
Sbjct: 225 VHESIERGGKVLIPVFALGRAQELCILLETFW 256
>gi|345563127|gb|EGX46131.1| hypothetical protein AOL_s00110g295 [Arthrobotrys oligospora ATCC
24927]
Length = 982
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 11/114 (9%)
Query: 49 GPIWKIV-KEGEEEIVYGVDFNLKKERHLNGC--------VLDRFIRPTVVITDTMSAIY 99
G IW+I E I+Y V +N ++ HL+ V + F+ PT +I + +
Sbjct: 172 GTIWRIQHSHSSENILYAVSWNHLRDAHLSSASFLPGPTGVSEEFLNPTALICSPYNCLP 231
Query: 100 QQAR--RRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDS 151
Q R+ RDE L++ I + G VL+ D++ R+LEL ++LE +R+K S
Sbjct: 232 GQVSTPRKKRDELLLSAIRKAAFAGGTVLIPTDSSARILELAYLLEHDFRSKSS 285
>gi|410928941|ref|XP_003977858.1| PREDICTED: integrator complex subunit 11-like [Takifugu rubripes]
Length = 601
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ G + G +K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVPLNLHQT-VQVDDELEIKAYYAGHVL--GAAMVQIKVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++I+++ A + +R R+ + + +++ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPDILISESTYATTIRDSKRCRERDFLKKVHESIERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|327288530|ref|XP_003228979.1| PREDICTED: integrator complex subunit 11-like [Anolis carolinensis]
Length = 600
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGCESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++I+++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHETIERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>gi|281201684|gb|EFA75892.1| integrator complex subunit 11 [Polysphondylium pallidum PN500]
Length = 648
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 56 KEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNI 115
K GEE +VY D+N+ +RHL +D + PT++IT+T A + +R R+ + +
Sbjct: 193 KVGEESVVYTGDYNMTPDRHLGSAWIDA-VNPTLLITETTYATTIRDSKRGRERDFLKRV 251
Query: 116 LQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + G VL+ V GRV EL +++ W
Sbjct: 252 HECVEKGGKVLIPVFALGRVQELCILIDTYW 282
>gi|10433243|dbj|BAB13943.1| unnamed protein product [Homo sapiens]
Length = 499
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 42 YGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQ 101
Y + +++I K G E +VY D+N+ +RHL +D+ RP ++IT++ A +
Sbjct: 53 YAGHVLGAAMFQI-KVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYATTIR 110
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+R R+ + + +T+ G VL+ V GR EL +L+ W
Sbjct: 111 DSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLKTFW 155
>gi|340381556|ref|XP_003389287.1| PREDICTED: integrator complex subunit 11-like [Amphimedon
queenslandica]
Length = 610
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
V+ G + +VY D+N+ +RHL +DR RP ++IT++ A + +R R+ +
Sbjct: 167 VRVGHQSVVYTGDYNMTPDRHLGSAWIDR-CRPDLLITESTYATTIRDSKRCRERDFLKK 225
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + L +G VL+ V GR EL +LE W
Sbjct: 226 LHECLERDGKVLIPVFALGRAQELCILLESYW 257
>gi|261206112|ref|XP_002627793.1| cleavage and polyadenylylation specificity factor [Ajellomyces
dermatitidis SLH14081]
gi|239592852|gb|EEQ75433.1| cleavage and polyadenylylation specificity factor [Ajellomyces
dermatitidis SLH14081]
Length = 983
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 15/113 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E I+Y VD+N +E + G V+++ +PT + T
Sbjct: 162 GTIWHI-QHGMESIIYAVDWNQARENVIAGAAWFGGSGASGTEVVEQLRKPTAFVCSTRG 220
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
+ R+ RD+ L+ I + G VL+ DT+ R LEL ++LE WR
Sbjct: 221 GDKLSLLGGRKRRDDLLLDMIRSSFSKGGTVLIPTDTSARALELAYVLEHAWR 273
>gi|358385845|gb|EHK23441.1| hypothetical protein TRIVIDRAFT_37526 [Trichoderma virens Gv29-8]
Length = 957
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 61/123 (49%), Gaps = 19/123 (15%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E G V+++ +PT +I +
Sbjct: 188 GTIWHI-QHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAEVIEQLRKPTALICSSRG 246
Query: 97 AI--YQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR----NKD 150
A Q R RDE L+ I + G VL+ VD++ RVLE++++LE WR NKD
Sbjct: 247 ADKNAQAGGRAKRDEHLIEMIKTCVSRGGTVLIPVDSSARVLEISYLLEYAWRTDAANKD 306
Query: 151 SGL 153
L
Sbjct: 307 GVL 309
>gi|320590943|gb|EFX03384.1| polyadenylation specificity factor [Grosmannia clavigera kw1407]
Length = 1036
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 15/111 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVYGVD+ KE +G V ++ +PT +++ + +
Sbjct: 189 GTIWHI-QLGLESIVYGVDWGQYKENVFSGAAWIGGGGSGGSEVNEQLRKPTALVSSSRA 247
Query: 97 AIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
R RDE+L+ I + G VL+ VD++ RVLEL ++LE WR
Sbjct: 248 PAV--LRPGLRDEQLLQAIRVCVARGGTVLIPVDSSARVLELAYLLEHAWR 296
>gi|116203607|ref|XP_001227614.1| hypothetical protein CHGG_09687 [Chaetomium globosum CBS 148.51]
gi|88175815|gb|EAQ83283.1| hypothetical protein CHGG_09687 [Chaetomium globosum CBS 148.51]
Length = 956
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 16/113 (14%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC--------------VLDRFIRPTVVITDT 94
G IW I + G E IVY VD+N +E +G V+++ +PT ++ +
Sbjct: 188 GTIWHI-QHGLESIVYAVDWNQARENVFSGAAWLGGGHGGAGGAEVIEQLRKPTALVCSS 246
Query: 95 MSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
+ R R RDE+L+ +I + G VL+ VD++ RVLEL++ LE WR
Sbjct: 247 RTPETALPRGR-RDEQLLESIKLCIARGGTVLIPVDSSARVLELSYFLEHAWR 298
>gi|168034228|ref|XP_001769615.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679157|gb|EDQ65608.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 563
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
VK G++ +VY D+N+ +RHL +DR + P ++IT++ A + +R R+ +
Sbjct: 159 VKAGDDTVVYTGDYNMTPDRHLGAAQIDR-LEPDLLITESTYATTVRDSKRAREREFLKA 217
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + + G VL+ V GR EL +L++ W
Sbjct: 218 VHKCVAAGGKVLIPVFALGRAQELCILLDEYW 249
>gi|320170221|gb|EFW47120.1| integrator complex subunit 11 [Capsaspora owczarzaki ATCC 30864]
Length = 661
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
V+ G E +VY DFN+ +RHL +DR RP ++IT++ A + +R R+ +
Sbjct: 165 VRVGSESVVYTGDFNMTPDRHLGAAWIDR-CRPDLLITESTYATTIRDSKRNREGEFLRK 223
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
I + + G VL+ V GR EL ++E W
Sbjct: 224 IHECVEQGGKVLIPVFALGRAQELCILVETYW 255
>gi|427785581|gb|JAA58242.1| Putative mrna cleavage and polyadenylation factor ii complex brr5
cpsf subunit [Rhipicephalus pulchellus]
Length = 587
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 42 YGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQ 101
Y + +++I + G + +VY D+N+ +RHL LD+ RP ++IT++ A +
Sbjct: 154 YAGHVLGAAMFRI-RVGSQSVVYTGDYNMTPDRHLGAAWLDK-CRPDLLITESTYATTIR 211
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+R R+ +T + + G VL+ V GR EL +LE W
Sbjct: 212 DSKRCRERDFLTKVHDCIDKGGKVLIPVFALGRAQELCILLETYW 256
>gi|325088985|gb|EGC42295.1| cleavage and polyadenylation specific subunit [Ajellomyces
capsulatus H88]
Length = 1010
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E I+Y VD+N +E + G V+++ +PT + T
Sbjct: 202 GTIWHI-QHGMESIIYAVDWNQARENVIAGAAWFGGSGASGTEVVEQLRKPTAFVCSTRG 260
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
R+ RD+ LM I G VL+ DT+ R LEL ++LE WR
Sbjct: 261 GDKFSLPGGRKKRDDLLMDMIRNCFSKGGTVLIPTDTSARALELAYVLEHAWR 313
>gi|240280758|gb|EER44262.1| cleavage and polyadenylation specificity factor subunit 2
[Ajellomyces capsulatus H143]
Length = 1010
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E I+Y VD+N +E + G V+++ +PT + T
Sbjct: 202 GTIWHI-QHGMESIIYAVDWNQARENVIAGAAWFGGSGASGTEVVEQLRKPTAFVCSTRG 260
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
R+ RD+ LM I G VL+ DT+ R LEL ++LE WR
Sbjct: 261 GDKFSLPGGRKKRDDLLMDMIRNCFSKGGTVLIPTDTSARALELAYVLEHAWR 313
>gi|312083284|ref|XP_003143797.1| RNA-metabolising metallo-beta-lactamase [Loa loa]
gi|307761039|gb|EFO20273.1| RNA-metabolising metallo-beta-lactamase [Loa loa]
Length = 644
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 42 YGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQ 101
Y + +++I+ G E ++Y DFN +RHL ++ ++P ++I+++ A +
Sbjct: 209 YAGHVLGAAMFQIMV-GSESVLYTGDFNTTPDRHLGAARVEPGLKPDLLISESTYATTIR 267
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+R R+ + + T+ N G VL+ V GR EL +LE W
Sbjct: 268 DSKRARERDFLKKVHDTVSNGGKVLIPVFALGRAQELCILLESYW 312
>gi|440632320|gb|ELR02239.1| hypothetical protein GMDG_05312 [Geomyces destructans 20631-21]
Length = 988
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 15/117 (12%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKER------------HLNGCVLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E V+++ +PT +I +
Sbjct: 190 GTIWHI-QHGLESIVYAVDWNQARENILAGAAWLGGAGAGGAEVIEQLRKPTALICSSKG 248
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDS 151
A I R RDE L+ I + G VL+ D++ RVLEL ++LE WR S
Sbjct: 249 AERIALVGGRTKRDEALLDMIKSAIAKGGTVLIPTDSSARVLELAYLLEHAWRKDAS 305
>gi|398396344|ref|XP_003851630.1| hypothetical protein MYCGRDRAFT_109995 [Zymoseptoria tritici
IPO323]
gi|339471510|gb|EGP86606.1| hypothetical protein MYCGRDRAFT_109995 [Zymoseptoria tritici
IPO323]
Length = 1108
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 63/138 (45%), Gaps = 28/138 (20%)
Query: 35 GNHSSWAYGE-EIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGC-----------VLD 82
GN + AY G IW I + E IVY D+N +E L+G +++
Sbjct: 171 GNLTITAYSAGHTIGGTIWHI-QHSMESIVYAADWNQGRENLLSGAAWLGSTSGGAEIIE 229
Query: 83 RFIRPTVVI--------TDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGR 134
RPT +I TDTM R+ RDE L+ I T+ G VL+ D++ R
Sbjct: 230 ALRRPTALICSSKGVEKTDTMP-------RKKRDETLVGLIRDTIAQGGKVLIPTDSSAR 282
Query: 135 VLELTHMLEQLWRNKDSG 152
VLEL +L Q W+ +G
Sbjct: 283 VLELAFVLNQNWKENING 300
>gi|393215649|gb|EJD01140.1| cleavage and polyadenylation specificity factor subunit
[Fomitiporia mediterranea MF3/22]
Length = 922
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 10/108 (9%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR----------FIRPTVVITDTMSAI 98
G IWKI I+Y VD N +ERHL+G V+ R RP ++ITD
Sbjct: 200 GTIWKIRSPSAGTILYAVDLNHLRERHLDGTVILRGAGAGGVYEALARPDLMITDADRVN 259
Query: 99 YQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
R++ RD +L+ + TL + +VL+ D++ R+LEL +L+Q W
Sbjct: 260 NISCRKKDRDAQLIDTVTSTLSSRHSVLMPCDSSTRLLELLVLLDQHW 307
>gi|402590428|gb|EJW84358.1| RNA-metabolising metallo-beta-lactamase [Wuchereria bancrofti]
Length = 579
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 42 YGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQ 101
Y + +++I+ G E ++Y DFN +RHL ++ ++P ++I+++ A +
Sbjct: 125 YAGHVLGAAMFQIMV-GSESVLYTGDFNTTPDRHLGAARVEPGLKPDLLISESTYATTIR 183
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+R R+ + + T+ N G VL+ V GR EL +LE W
Sbjct: 184 DSKRARERDFLKKVHDTVSNGGKVLIPVFALGRAQELCILLESYW 228
>gi|242786013|ref|XP_002480717.1| cleavage and polyadenylylation specificity factor, putative
[Talaromyces stipitatus ATCC 10500]
gi|218720864|gb|EED20283.1| cleavage and polyadenylylation specificity factor, putative
[Talaromyces stipitatus ATCC 10500]
Length = 1017
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 15/114 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E + G V+++ +PT +I +
Sbjct: 207 GTIWHI-QHGMESIVYAVDWNQARENVVAGAAWFGGSGTSGTEVIEQLRKPTALICSSKG 265
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
+ RD L I +L G+VL+ DT+ RVLEL++ LE WR+
Sbjct: 266 GDKFAPPGGLQKRDALLFDMIRSSLAKGGSVLIPTDTSARVLELSYALEHAWRD 319
>gi|154278321|ref|XP_001539974.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150413559|gb|EDN08942.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 977
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E I+Y VD+N +E + G V+++ +PT + T
Sbjct: 202 GTIWHI-QHGMESIIYAVDWNQARENVIAGAAWFGGSGASGTEVVEQLRKPTAFVCSTRG 260
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
R+ RD+ LM I G VL+ DT+ R LEL ++LE WR
Sbjct: 261 GDKFSLSGGRKKRDDLLMDMIRNCFSKGGTVLIPSDTSARALELAYVLEHAWR 313
>gi|170595519|ref|XP_001902415.1| RNA-metabolising metallo-beta-lactamase family protein [Brugia
malayi]
gi|158589929|gb|EDP28737.1| RNA-metabolising metallo-beta-lactamase family protein [Brugia
malayi]
Length = 589
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 42 YGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQ 101
Y + +++I+ G E ++Y DFN +RHL ++ ++P ++I+++ A +
Sbjct: 154 YAGHVLGAAMFQIMV-GSESVLYTGDFNTTPDRHLGAARVEPGLKPDLLISESTYATTIR 212
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+R R+ + + T+ N G VL+ V GR EL +LE W
Sbjct: 213 DSKRARERDFLKKVHDTVSNGGKVLIPVFALGRAQELCILLESYW 257
>gi|345311496|ref|XP_001519388.2| PREDICTED: integrator complex subunit 11-like, partial
[Ornithorhynchus anatinus]
Length = 359
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 58 GEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQ 117
G E +VY D+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +
Sbjct: 77 GSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHE 135
Query: 118 TLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
T+ G VL+ V GR EL +LE W
Sbjct: 136 TVERGGKVLIPVFALGRAQELCILLETFW 164
>gi|453084596|gb|EMF12640.1| Metallo-hydrolase/oxidoreductase [Mycosphaerella populorum SO2202]
Length = 964
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 10/113 (8%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC--------VLDRFIRPTVVITDTMSAIYQ 100
G IW I + E IVY D+N +E L+G + + RPT +I +
Sbjct: 185 GTIWHI-QHSLESIVYAADWNQGRENLLSGAAWLSGGSNITEGLQRPTALICSSRGVEKT 243
Query: 101 QA-RRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSG 152
+ R+ RDE L++ I +T+ G VL+ D++ RVLEL +L WR G
Sbjct: 244 ETLTRKKRDEALISLIRETIAQGGKVLIPTDSSARVLELAFILNHTWRENVEG 296
>gi|367031802|ref|XP_003665184.1| hypothetical protein MYCTH_2308652 [Myceliophthora thermophila ATCC
42464]
gi|347012455|gb|AEO59939.1| hypothetical protein MYCTH_2308652 [Myceliophthora thermophila ATCC
42464]
Length = 1035
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 16/115 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC--------------VLDRFIRPTVVITDT 94
G IW I + G E IVY VD++ +E +G V+++ +PT ++ +
Sbjct: 188 GTIWHI-QHGLESIVYAVDWSQARENVFSGAAWLGGGHGAAGGAEVIEQLRKPTALVCSS 246
Query: 95 MSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+ R R RDE+L+ +I + G VL+ VD++ RVLEL+++LE WR++
Sbjct: 247 RTPETALPRGR-RDEQLLESIKLCIARGGTVLIPVDSSARVLELSYLLEHAWRSE 300
>gi|291000374|ref|XP_002682754.1| predicted protein [Naegleria gruberi]
gi|284096382|gb|EFC50010.1| predicted protein [Naegleria gruberi]
Length = 458
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 73/161 (45%), Gaps = 28/161 (17%)
Query: 8 NSRFFKSN------KKQFPMFPFHETKIKYDE------YGNH---SSWAYGEEIFTGPIW 52
N FF S KK P+ H+T I DE Y H ++ Y +++ TG
Sbjct: 112 NQGFFSSEDVKNCIKKVQPL-NLHQTIILDDELEIKPYYAGHVLGAAMFYVKDLATG--- 167
Query: 53 KIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLM 112
+VY D+N+ +RHL +DR RP ++IT+T A + + +R+
Sbjct: 168 -------ASVVYTGDYNMTADRHLGSATIDR-CRPDLLITETTYATTIRDSKSSRERDFC 219
Query: 113 TNILQTLRNN-GNVLVAVDTAGRVLELTHMLEQLWRNKDSG 152
+ T+ N G VL+ V GRV EL +LE W K+ G
Sbjct: 220 KQVYDTVVNKKGKVLIPVFALGRVQELCILLETYWERKNLG 260
>gi|225560694|gb|EEH08975.1| cleavage and polyadenylation specificity factor subunit 2
[Ajellomyces capsulatus G186AR]
Length = 1010
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E I+Y VD+N +E + G V+++ +PT + T
Sbjct: 202 GTIWHI-QHGMESIIYAVDWNQARENVIAGAAWFGGSGASGTEVVEQLRKPTAFVCSTRG 260
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
R+ RD+ LM I G VL+ DT+ R LEL ++LE WR
Sbjct: 261 GDKFSLLGGRKKRDDLLMDMIRNCFSKGGTVLIPTDTSARALELAYVLEHAWR 313
>gi|198413502|ref|XP_002128796.1| PREDICTED: similar to cleavage and polyadenylation specific factor
3-like [Ciona intestinalis]
Length = 605
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
+S+ K K+ H+T I D+ ++ G + G ++K G + ++Y D
Sbjct: 123 DSKMIKDCMKKVIPVNLHQT-IHVDDQLEIKAYYAGHVL--GAAMFLLKVGTDSVLYTGD 179
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP V+IT++ A + +R R+ + + + + + G VL+
Sbjct: 180 YNMTPDRHLGAAWVDK-CRPDVLITESTYATTIRDSKRCRERDFLKKVHERVEDGGKVLI 238
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 239 PVFALGRAQELCILLESYW 257
>gi|212543221|ref|XP_002151765.1| cleavage and polyadenylylation specificity factor, putative
[Talaromyces marneffei ATCC 18224]
gi|210066672|gb|EEA20765.1| cleavage and polyadenylylation specificity factor, putative
[Talaromyces marneffei ATCC 18224]
Length = 1015
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 15/114 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E + G V+++ +PT +I +
Sbjct: 207 GTIWHI-QHGMESIVYAVDWNQARENVVAGAAWFGGSGTSGTEVIEQLRKPTALICSSKG 265
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
RD L I +L G+VL+ DT+ RVLEL++ LE WR+
Sbjct: 266 GDKFAPPGGLHKRDALLFDMIRSSLAKGGSVLIPTDTSARVLELSYALEHAWRD 319
>gi|390601510|gb|EIN10904.1| hypothetical protein PUNSTDRAFT_112695 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 937
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 9/107 (8%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR---------FIRPTVVITDTMSAIY 99
G IWKI IVY V+ N +ERHL+G VL R RP ++ITD
Sbjct: 209 GAIWKIRSPSAGTIVYAVNLNHMRERHLDGTVLIRPGGGGVFEPLARPDLLITDAERTNV 268
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+RR+ RD L+ I L ++ + D++ R+LEL +L+Q W
Sbjct: 269 VSSRRKDRDAALIDTITAALARRSSLFMPCDSSTRLLELLVLLDQHW 315
>gi|241245173|ref|XP_002402434.1| cleavage and polyadenylation specificity factor, putative [Ixodes
scapularis]
gi|215496345|gb|EEC05985.1| cleavage and polyadenylation specificity factor, putative [Ixodes
scapularis]
Length = 596
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + ++ I + G + +VY D
Sbjct: 122 TSQMIKDCMKKVVAVNLHQT-VQVDDELEIKAY-YAGHVLGAAMFHI-RVGSQSVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ +T + + G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLTKVHDCIDKGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETYW 256
>gi|193608339|ref|XP_001949326.1| PREDICTED: integrator complex subunit 11-like isoform 1
[Acyrthosiphon pisum]
gi|328710634|ref|XP_003244318.1| PREDICTED: integrator complex subunit 11-like isoform 2
[Acyrthosiphon pisum]
Length = 603
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+K G + +VY DF++ +RHL +D+ RPT++IT++ A + +R R+ + N
Sbjct: 169 IKVGNDSVVYTGDFSMTPDRHLGAAWIDK-CRPTLLITESTYATTIRDSKRCRERDFLKN 227
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + + G VL+ + GR EL +++ W
Sbjct: 228 VHECIDRGGKVLIPIFALGRAQELCILIDTYW 259
>gi|301092285|ref|XP_002997001.1| cleavage and polyadenylation specificity factor subunit, putative
[Phytophthora infestans T30-4]
gi|262112190|gb|EEY70242.1| cleavage and polyadenylation specificity factor subunit, putative
[Phytophthora infestans T30-4]
Length = 222
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 45 EIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARR 104
+ G +W+I+KE ++I+Y VD+N + E L +LD F RPT++ITD+M+ +Q +
Sbjct: 154 HLIGGALWRIMKE-TDDIIYAVDYNHRSEHVLQKTILDSFTRPTLLITDSMNLHAEQPKL 212
Query: 105 RTRDERL 111
+ RD ++
Sbjct: 213 KDRDSKV 219
>gi|442751667|gb|JAA67993.1| Putative cleavage and polyadenylation specificity factor cpsf
subunit [Ixodes ricinus]
Length = 596
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + ++ I + G + +VY D
Sbjct: 122 TSQMIKDCMKKVVAVNLHQT-VQVDDELEIKAY-YAGHVLGAAMFHI-RVGSQSVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ +T + + G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLTKVHDCIDEGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETYW 256
>gi|348689663|gb|EGZ29477.1| hypothetical protein PHYSODRAFT_473604 [Phytophthora sojae]
Length = 221
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 45 EIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARR 104
+ G +W+I+KE ++I+Y VD+N + E L +LD F RPT++ITD+M+ +Q +
Sbjct: 154 HLIGGALWRIMKE-TDDIIYAVDYNHRSEHVLQKTILDSFTRPTLLITDSMNLHAEQPKL 212
Query: 105 RTRDER 110
+ RD +
Sbjct: 213 KDRDSK 218
>gi|258566303|ref|XP_002583896.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237907597|gb|EEP81998.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 815
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 15/111 (13%)
Query: 51 IWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMSA- 97
+W I + G E IVY VD+N +E + G V+++ +PT ++
Sbjct: 1 MWHI-QHGMESIVYAVDWNQARENVIAGAAWFGSSGANWTDVIEQLRKPTALVCSAKGGD 59
Query: 98 -IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
R+ RD+ L+ I + NG VL+ DT+ RVLEL ++LE WR
Sbjct: 60 KFALAGGRKKRDDLLLDMIRSCVAKNGTVLLPTDTSARVLELAYVLEHAWR 110
>gi|308509314|ref|XP_003116840.1| hypothetical protein CRE_01624 [Caenorhabditis remanei]
gi|308241754|gb|EFO85706.1| hypothetical protein CRE_01624 [Caenorhabditis remanei]
Length = 612
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
++ G+ ++Y D+N+ +RHL + +RPTV+I+++ A + +R R+ +
Sbjct: 170 IRLGDHSVLYTGDYNMTPDRHLGAARVLPGVRPTVLISESTYATTIRDSKRARERDFLRK 229
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ +T+ G V++ V GR EL +LE W
Sbjct: 230 VHETVMKGGKVIIPVFALGRAQELCILLESYW 261
>gi|195394529|ref|XP_002055895.1| GJ10637 [Drosophila virilis]
gi|194142604|gb|EDW59007.1| GJ10637 [Drosophila virilis]
Length = 597
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+K G + +VY D+N+ +RHL +D+ RP ++IT++ A + +R R+ +
Sbjct: 166 IKVGSQSVVYTGDYNMTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLKK 224
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + + G VL+ V GR EL +LE W
Sbjct: 225 VHECVSKGGKVLIPVFALGRAQELCILLETYW 256
>gi|346472285|gb|AEO35987.1| hypothetical protein [Amblyomma maculatum]
Length = 510
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 29 IKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPT 88
++ D+ ++ G + W ++ G + +VY D+N+ +RHL +D+ RP
Sbjct: 113 VQVDDELEIKAYYAGHVLGAAMFW--IRVGSQSVVYTGDYNMTPDRHLGAAWVDK-CRPD 169
Query: 89 VVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
++IT++ A + +R R+ +T + + G VL+ V GR EL +LE W
Sbjct: 170 LLITESTYATTIRDSKRCRERDFLTKVHDCIDKGGKVLIPVFALGRAQELCILLETYW 227
>gi|268530366|ref|XP_002630309.1| Hypothetical protein CBG00745 [Caenorhabditis briggsae]
Length = 637
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 50/92 (54%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
++ G+ ++Y D+N+ +RHL + +RPT++I+++ A + +R R+ +
Sbjct: 196 IRVGDHSVLYTGDYNMTPDRHLGAARVLPGVRPTILISESTYATTIRDSKRARERDFLRK 255
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ +T+ G V++ V GR EL +LE W
Sbjct: 256 VHETVMKGGKVIIPVFALGRAQELCILLESYW 287
>gi|195112455|ref|XP_002000788.1| GI10422 [Drosophila mojavensis]
gi|193917382|gb|EDW16249.1| GI10422 [Drosophila mojavensis]
Length = 597
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+K G + +VY D+N+ +RHL +D+ RP ++IT++ A + +R R+ +
Sbjct: 166 IKVGSQSVVYTGDYNMTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLKK 224
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + + G VL+ V GR EL +LE W
Sbjct: 225 VHECVLKGGKVLIPVFALGRAQELCILLETYW 256
>gi|341903207|gb|EGT59142.1| hypothetical protein CAEBREN_31222 [Caenorhabditis brenneri]
Length = 571
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 50/92 (54%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
++ G+ ++Y D+N+ +RHL + +RPTV+I+++ A + +R R+ +
Sbjct: 173 IRVGDHSVLYTGDYNMTPDRHLGAARVLPGVRPTVLISESTYATTIRDSKRARERDFLRK 232
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ +++ G V++ V GR EL +LE W
Sbjct: 233 VHESVMKGGKVIIPVFALGRAQELCILLESYW 264
>gi|156546030|ref|XP_001608037.1| PREDICTED: integrator complex subunit 11-like isoform 1 [Nasonia
vitripennis]
gi|345498393|ref|XP_003428220.1| PREDICTED: integrator complex subunit 11-like isoform 2 [Nasonia
vitripennis]
gi|345498395|ref|XP_003428221.1| PREDICTED: integrator complex subunit 11-like isoform 3 [Nasonia
vitripennis]
Length = 595
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H++ + E + +A G + W ++ G + IVY D
Sbjct: 122 TSQMIKDCMKKVIAVTLHQSVMVDSELEIKAYYA-GHVLGAAMFW--IRVGSQSIVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++I+++ A + +R R+ + + + + G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECIDKGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETYW 256
>gi|357624104|gb|EHJ75000.1| hypothetical protein KGM_18742 [Danaus plexippus]
Length = 595
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H++ + +E + +A G + W ++ G + +VY D
Sbjct: 122 TSQMIKDCIKKVTAVTLHQSVMVDNELEIKAYYA-GHVLGAAMFW--IRVGSQSVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++I+++ A + +R R+ + + + + G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECVEKGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETYW 256
>gi|452981499|gb|EME81259.1| hypothetical protein MYCFIDRAFT_140021 [Pseudocercospora fijiensis
CIRAD86]
Length = 938
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 15/118 (12%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC-------------VLDRFIRPTVVITDTM 95
G IW I + E IVY D+N +E L+G +++ RPT ++ +
Sbjct: 182 GTIWHI-QHSLESIVYAADWNQGRENLLSGAAWLGGSGAGGGAEIIEPLRRPTALVCSSR 240
Query: 96 SAIYQQA-RRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSG 152
R+ RDE L++ I +T+ G VL+ D++ RVLEL +L WR SG
Sbjct: 241 GVEKTDVLPRKKRDETLISLIRETIAQGGKVLIPTDSSARVLELAFILNHTWRENTSG 298
>gi|315054255|ref|XP_003176502.1| cleavage and polyadenylation specificity factor subunit 2
[Arthroderma gypseum CBS 118893]
gi|311338348|gb|EFQ97550.1| cleavage and polyadenylation specificity factor subunit 2
[Arthroderma gypseum CBS 118893]
Length = 1024
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 16/119 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD++ +E + G V+++ +PT +I
Sbjct: 204 GTIWHI-QHGMESIVYAVDWSQARENVIAGAAWFGSSIGSGTEVIEQLRKPTALICSASG 262
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN-KDSG 152
R+ RD L+ I ++ G VL+ D++ RVLE+ ++LE WR DSG
Sbjct: 263 GDKFALPGGRKKRDGLLLDMIRSSVAKGGTVLLPTDSSARVLEIAYVLEHAWREAADSG 321
>gi|307170840|gb|EFN62951.1| Integrator complex subunit 11 [Camponotus floridanus]
Length = 595
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H++ + E + +A G + W ++ G + IVY D
Sbjct: 122 TSQMIKDCMKKVVAVTLHQSVMVDPELEIKAYYA-GHVLGAAMFW--IRVGSQSIVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++I+++ A + +R R+ + + + + G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECIDKGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETYW 256
>gi|380011463|ref|XP_003689822.1| PREDICTED: integrator complex subunit 11-like [Apis florea]
Length = 595
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H++ + E + +A G + W ++ G + IVY D
Sbjct: 122 TSQMIKDCMKKVIAVTLHQSVMVDSELEIKAYYA-GHVLGAAMFW--IRVGSQSIVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++I+++ A + +R R+ + + + + G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECIDRGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETYW 256
>gi|383859336|ref|XP_003705151.1| PREDICTED: integrator complex subunit 11-like isoform 1 [Megachile
rotundata]
Length = 595
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H++ + E + +A G + W ++ G + IVY D
Sbjct: 122 TSQMIKDCMKKVIAVTLHQSVMVDSELEIKAYYA-GHVLGAAMFW--IRVGSQSIVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++I+++ A + +R R+ + + + + G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECIDRGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETYW 256
>gi|341890123|gb|EGT46058.1| hypothetical protein CAEBREN_05882 [Caenorhabditis brenneri]
Length = 618
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 50/92 (54%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
++ G+ ++Y D+N+ +RHL + +RPTV+I+++ A + +R R+ +
Sbjct: 170 IRVGDHSVLYTGDYNMTPDRHLGAARVLPGVRPTVLISESTYATTIRDSKRARERDFLRK 229
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ +++ G V++ V GR EL +LE W
Sbjct: 230 VHESVMKGGKVIIPVFALGRAQELCILLESYW 261
>gi|340728535|ref|XP_003402577.1| PREDICTED: integrator complex subunit 11-like [Bombus terrestris]
gi|350421011|ref|XP_003492700.1| PREDICTED: integrator complex subunit 11-like [Bombus impatiens]
Length = 595
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H++ + E + +A G + W ++ G + IVY D
Sbjct: 122 TSQMIKDCMKKVIAVTLHQSVMVDSELEIKAYYA-GHVLGAAMFW--IRVGSQSIVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++I+++ A + +R R+ + + + + G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECIDRGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETYW 256
>gi|328776642|ref|XP_003249190.1| PREDICTED: integrator complex subunit 11-like [Apis mellifera]
Length = 603
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H++ + E + +A G + W ++ G + IVY D
Sbjct: 122 TSQMIKDCMKKVIAVTLHQSVMVDSELEIKAYYA-GHVLGAAMFW--IRVGSQSIVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++I+++ A + +R R+ + + + + G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECIDRGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETYW 256
>gi|307215032|gb|EFN89859.1| Integrator complex subunit 11 [Harpegnathos saltator]
Length = 594
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
V+ G + IVY D+N+ +RHL +D+ RP ++I+++ A + +R R+ +
Sbjct: 165 VRVGSQSIVYTGDYNMTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKK 223
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + + G VL+ V GR EL +LE W
Sbjct: 224 VHECIDRGGKVLIPVFALGRAQELCILLETYW 255
>gi|242013971|ref|XP_002427672.1| Endoribonuclease YSH1, putative [Pediculus humanus corporis]
gi|212512102|gb|EEB14934.1| Endoribonuclease YSH1, putative [Pediculus humanus corporis]
Length = 572
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 4/138 (2%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDF 68
S+ K K+ H++ I D ++ G + W ++ G +VY D+
Sbjct: 100 SQMIKDCMKKVITVTLHQS-IMVDSQLEIKAYYAGHVLGAAMFW--IRVGNLSVVYTGDY 156
Query: 69 NLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVA 128
N+ +RHL +D+ RP ++IT++ A + +R R+ + + + + G VL+
Sbjct: 157 NMTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLKKVHECIEKGGKVLIP 215
Query: 129 VDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 216 VFALGRAQELCILLETYW 233
>gi|21358523|ref|NP_651721.1| integrator 11 [Drosophila melanogaster]
gi|7301822|gb|AAF56931.1| integrator 11 [Drosophila melanogaster]
gi|16768852|gb|AAL28645.1| LD08814p [Drosophila melanogaster]
gi|220943570|gb|ACL84328.1| CG1972-PA [synthetic construct]
gi|220953494|gb|ACL89290.1| CG1972-PA [synthetic construct]
Length = 597
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+K G + +VY D+N+ +RHL +D+ RP ++I+++ A + +R R+ +
Sbjct: 166 IKVGSQSVVYTGDYNMTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKK 224
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + + G VL+ V GR EL +LE W
Sbjct: 225 VHECVAKGGKVLIPVFALGRAQELCILLETYW 256
>gi|194765324|ref|XP_001964777.1| GF23370 [Drosophila ananassae]
gi|190615049|gb|EDV30573.1| GF23370 [Drosophila ananassae]
Length = 597
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+K G + +VY D+N+ +RHL +D+ RP ++I+++ A + +R R+ +
Sbjct: 166 IKVGSQSVVYTGDYNMTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKK 224
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + + G VL+ V GR EL +LE W
Sbjct: 225 VHECVAKGGKVLIPVFALGRAQELCILLETYW 256
>gi|195341281|ref|XP_002037239.1| GM12816 [Drosophila sechellia]
gi|195574829|ref|XP_002105386.1| GD21460 [Drosophila simulans]
gi|194131355|gb|EDW53398.1| GM12816 [Drosophila sechellia]
gi|194201313|gb|EDX14889.1| GD21460 [Drosophila simulans]
Length = 597
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+K G + +VY D+N+ +RHL +D+ RP ++I+++ A + +R R+ +
Sbjct: 166 IKVGSQSVVYTGDYNMTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKK 224
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + + G VL+ V GR EL +LE W
Sbjct: 225 VHECVAKGGKVLIPVFALGRAQELCILLETYW 256
>gi|195062087|ref|XP_001996130.1| GH14325 [Drosophila grimshawi]
gi|193891922|gb|EDV90788.1| GH14325 [Drosophila grimshawi]
Length = 597
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+K G + +VY D+N+ +RHL +D+ RP ++I+++ A + +R R+ +
Sbjct: 166 IKVGSQSVVYTGDYNMTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKK 224
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + + G VL+ V GR EL +LE W
Sbjct: 225 VHECVAKGGKVLIPVFALGRAQELCILLETYW 256
>gi|391330858|ref|XP_003739869.1| PREDICTED: integrator complex subunit 11-like [Metaseiulus
occidentalis]
Length = 601
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
HET IK D ++ Y + ++ I K G IVY D+N+ +RHL +DR
Sbjct: 138 LHET-IKVDSELEIKAY-YAGHVLGAAMFHI-KVGHISIVYTGDYNMTPDRHLGAAWIDR 194
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
RP ++IT++ A + +R R+ + + + G VL+ GR EL +LE
Sbjct: 195 -CRPDLLITESTYATTIRDSKRCRERDFLNKVHDCIERGGKVLIPAFALGRAQELCILLE 253
Query: 144 QLW 146
W
Sbjct: 254 TYW 256
>gi|321468347|gb|EFX79332.1| hypothetical protein DAPPUDRAFT_304859 [Daphnia pulex]
Length = 597
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
VK G + +VY D+N+ +RHL +D+ RP ++I+++ A + +R R+ +
Sbjct: 165 VKVGNQSVVYTGDYNMTPDRHLGAAWIDK-CRPNILISESTYATTIRDSKRCRERDFLKK 223
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + G VL+ V GR EL +LE W
Sbjct: 224 VHDCVDRGGKVLIPVFALGRAQELCILLETYW 255
>gi|321457255|gb|EFX68345.1| hypothetical protein DAPPUDRAFT_218302 [Daphnia pulex]
Length = 597
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
VK G + +VY D+N+ +RHL +D+ RP ++I+++ A + +R R+ +
Sbjct: 165 VKVGNQSVVYTGDYNMTPDRHLGAAWIDK-CRPNILISESTYATTIRDSKRCRERDFLKK 223
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + G VL+ V GR EL +LE W
Sbjct: 224 VHDCVDRGGKVLIPVFALGRAQELCILLETYW 255
>gi|194906134|ref|XP_001981318.1| GG11690 [Drosophila erecta]
gi|190655956|gb|EDV53188.1| GG11690 [Drosophila erecta]
Length = 597
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+K G + +VY D+N+ +RHL +D+ RP ++I+++ A + +R R+ +
Sbjct: 166 IKVGSQSVVYTGDYNMTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKK 224
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + + G VL+ V GR EL +LE W
Sbjct: 225 VHECVAKGGKVLIPVFALGRAQELCILLETYW 256
>gi|195503187|ref|XP_002098546.1| GE23879 [Drosophila yakuba]
gi|194184647|gb|EDW98258.1| GE23879 [Drosophila yakuba]
Length = 597
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+K G + +VY D+N+ +RHL +D+ RP ++I+++ A + +R R+ +
Sbjct: 166 IKVGSQSVVYTGDYNMTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKK 224
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + + G VL+ V GR EL +LE W
Sbjct: 225 VHECVAKGGKVLIPVFALGRAQELCILLETYW 256
>gi|429857613|gb|ELA32471.1| cleavage and polyadenylylation specificity [Colletotrichum
gloeosporioides Nara gc5]
Length = 962
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 15/113 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKER------------HLNGCVLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E V+++ +PT ++ +
Sbjct: 188 GTIWHI-QHGLESIVYAVDWNQARENVYAGAAWLGGAGGGGAEVIEQLRKPTALVCSSRG 246
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
A + Q R RDE+L+ I + G L+ VD++ RVLE+ ++LE W+
Sbjct: 247 AEKVAQAGGRAKRDEQLVDIIKLCVSRGGTCLIPVDSSARVLEIAYLLEHTWQ 299
>gi|195445135|ref|XP_002070189.1| GK11920 [Drosophila willistoni]
gi|194166274|gb|EDW81175.1| GK11920 [Drosophila willistoni]
Length = 597
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+K G + +VY D+N+ +RHL +D+ RP ++I+++ A + +R R+ +
Sbjct: 166 IKVGSQSVVYTGDYNMTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKK 224
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + + G VL+ V GR EL +LE W
Sbjct: 225 VHECVAKGGKVLIPVFALGRAQELCILLETYW 256
>gi|32564696|ref|NP_495706.2| Protein F10B5.8 [Caenorhabditis elegans]
gi|26985793|emb|CAB54223.2| Protein F10B5.8 [Caenorhabditis elegans]
Length = 608
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 49/92 (53%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
++ G+ ++Y D+N+ +RHL + +RPTV+I+++ A + +R R+ +
Sbjct: 170 IRLGDHSVLYTGDYNMTPDRHLGAARVLPGVRPTVLISESTYATTIRDSKRARERDFLRK 229
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + + G V++ V GR EL +LE W
Sbjct: 230 VHECVMKGGKVIIPVFALGRAQELCILLESYW 261
>gi|440801023|gb|ELR22048.1| cleavage and polyadenylation specific factor 3like, putative
[Acanthamoeba castellanii str. Neff]
Length = 657
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
V+ G++ +VY D+N+ +RHL +++ +RP V+IT++ A + +R R+ +
Sbjct: 165 VRVGDQSVVYTGDYNMTPDRHLGAAWIEK-LRPDVLITESTYATTIRDSKRWRERDFLKR 223
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + G VL+ V GR EL +LE W
Sbjct: 224 VHSCVEKGGKVLIPVFALGRAQELCILLETYW 255
>gi|300121266|emb|CBK21646.2| unnamed protein product [Blastocystis hominis]
Length = 400
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 61/108 (56%), Gaps = 7/108 (6%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G IW I+ E + +VY ++ N + + HL G D +++ITD + +++R ++
Sbjct: 158 GSIWDIITETDH-LVYSMNINPQPDNHLRGASSDVSGNISLLITDACEHMTEKSRYNSQL 216
Query: 109 ERLMTN-----ILQTLRN-NGNVLVAVDTAGRVLELTHMLEQLWRNKD 150
E+ I TLR+ +G+VL+ VD+ GR LE+ +LE++W+ +
Sbjct: 217 EKAKFGHFSYLITDTLRDKHGSVLIPVDSVGRCLEVILLLERVWKESN 264
>gi|125773833|ref|XP_001358175.1| GA15164 [Drosophila pseudoobscura pseudoobscura]
gi|54637910|gb|EAL27312.1| GA15164 [Drosophila pseudoobscura pseudoobscura]
Length = 597
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+K G + +VY D+N+ +RHL +D+ RP ++I+++ A + +R R+ +
Sbjct: 166 IKVGSQSVVYTGDYNMTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKK 224
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + + G VL+ V GR EL +LE W
Sbjct: 225 VHECVARGGKVLIPVFALGRAQELCILLETYW 256
>gi|91086147|ref|XP_969343.1| PREDICTED: similar to CG1972 CG1972-PA [Tribolium castaneum]
gi|270009886|gb|EFA06334.1| hypothetical protein TcasGA2_TC009205 [Tribolium castaneum]
Length = 595
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 66/138 (47%), Gaps = 4/138 (2%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDF 68
S+ K K+ H++ + +E + +A G + W ++ G + +VY D+
Sbjct: 123 SQMIKDCMKKVIAVTLHQSLMVDNEIEIKAYYA-GHVLGAAMFW--IRVGAQSVVYTGDY 179
Query: 69 NLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVA 128
N+ +RHL +D+ RP ++I+++ A + +R R+ + + + + G VL+
Sbjct: 180 NMTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECMDRGGKVLIP 238
Query: 129 VDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 239 VFALGRAQELCILLETYW 256
>gi|302787435|ref|XP_002975487.1| hypothetical protein SELMODRAFT_52099 [Selaginella moellendorffii]
gi|300156488|gb|EFJ23116.1| hypothetical protein SELMODRAFT_52099 [Selaginella moellendorffii]
Length = 517
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
VK G +VY D+N+ +RHL +DR ++P ++IT++ A + R ++ +
Sbjct: 157 VKAGNSTVVYTGDYNMTPDRHLGAAQIDR-LKPDLLITESTYATTIRESRLAKEAEFLNV 215
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + G VL+ + GR EL +L++ W
Sbjct: 216 VHTCVSKGGKVLIPISALGRAQELCILLDEYW 247
>gi|302793925|ref|XP_002978727.1| hypothetical protein SELMODRAFT_109555 [Selaginella moellendorffii]
gi|300153536|gb|EFJ20174.1| hypothetical protein SELMODRAFT_109555 [Selaginella moellendorffii]
Length = 522
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
VK G +VY D+N+ +RHL +DR ++P ++IT++ A + R ++ +
Sbjct: 162 VKAGNSTVVYTGDYNMTPDRHLGAAQIDR-LKPDLLITESTYATTIRESRLAKEAEFLNV 220
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + G VL+ + GR EL +L++ W
Sbjct: 221 VHTCVSKGGKVLIPISALGRAQELCILLDEYW 252
>gi|383859338|ref|XP_003705152.1| PREDICTED: integrator complex subunit 11-like isoform 2 [Megachile
rotundata]
Length = 494
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
++ G + IVY D+N+ +RHL +D+ RP ++I+++ A + +R R+ +
Sbjct: 65 IRVGSQSIVYTGDYNMTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKK 123
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + + G VL+ V GR EL +LE W
Sbjct: 124 VHECIDRGGKVLIPVFALGRAQELCILLETYW 155
>gi|170052069|ref|XP_001862054.1| cleavage and polyadenylation specificity factor subunit 3 [Culex
quinquefasciatus]
gi|167873079|gb|EDS36462.1| cleavage and polyadenylation specificity factor subunit 3 [Culex
quinquefasciatus]
Length = 615
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
++ G + +VY D+N+ +RHL +D+ +P ++IT++ A + +R R+ +
Sbjct: 166 IRVGSQSVVYTGDYNMTPDRHLGAAWIDK-CKPDLLITESTYATTIRDSKRCRERDFLKK 224
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + + G VL+ V GR EL +LE W
Sbjct: 225 VHECVAKGGKVLIPVFALGRAQELCILLETYW 256
>gi|296815164|ref|XP_002847919.1| cleavage and polyadenylation specificity factor subunit 2
[Arthroderma otae CBS 113480]
gi|238840944|gb|EEQ30606.1| cleavage and polyadenylation specificity factor subunit 2
[Arthroderma otae CBS 113480]
Length = 1000
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 16/119 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD++ +E + G V+++ +PT +I
Sbjct: 185 GTIWHI-QHGMESIVYAVDWSQARENVIAGAAWFGSSGGSGTEVIEQLRKPTALICSASG 243
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN-KDSG 152
R+ RD L+ I + G VL+ D++ RVLE+ ++LE WR DSG
Sbjct: 244 GDKFALPGGRKKRDGLLLDMIRSCVAKGGTVLLPTDSSARVLEIAYVLEHAWREAADSG 302
>gi|312381513|gb|EFR27247.1| hypothetical protein AND_06171 [Anopheles darlingi]
Length = 624
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
++ G + +VY D+N+ +RHL +D+ +P ++IT++ A + +R R+ +
Sbjct: 166 IRVGSQSVVYTGDYNMTPDRHLGAAWIDK-CKPDLLITESTYATTIRDSKRCRERDFLKK 224
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + + G VL+ V GR EL +LE W
Sbjct: 225 VHECVAKGGKVLIPVFALGRAQELCILLETYW 256
>gi|157107341|ref|XP_001649735.1| cleavage and polyadenylation specificity factor [Aedes aegypti]
gi|108879612|gb|EAT43837.1| AAEL004757-PA [Aedes aegypti]
Length = 613
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
++ G + +VY D+N+ +RHL +D+ +P ++IT++ A + +R R+ +
Sbjct: 166 IRVGSQSVVYTGDYNMTPDRHLGAAWIDK-CKPDLLITESTYATTIRDSKRCRERDFLKK 224
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + + G VL+ V GR EL +LE W
Sbjct: 225 VHECVAKGGKVLIPVFALGRAQELCILLETYW 256
>gi|158298905|ref|XP_319042.4| AGAP009923-PA [Anopheles gambiae str. PEST]
gi|157014111|gb|EAA13845.4| AGAP009923-PA [Anopheles gambiae str. PEST]
Length = 608
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
++ G + +VY D+N+ +RHL +D+ +P ++IT++ A + +R R+ +
Sbjct: 166 IRVGSQSVVYTGDYNMTPDRHLGAAWIDK-CKPDLLITESTYATTIRDSKRCRERDFLKK 224
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + + G VL+ V GR EL +LE W
Sbjct: 225 VHECVAKGGKVLIPVFALGRAQELCILLETYW 256
>gi|402471873|gb|EJW05382.1| hypothetical protein EDEG_00046 [Edhazardia aedis USNM 41457]
Length = 507
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
VK G E +VY D+N +RHL G +D +RP + IT++ + R+ ++ +++
Sbjct: 162 VKVGCESLVYTGDYNTTPDRHLGGAWID-CLRPDLFITESTYGSTIRDCRKAKEREFLSS 220
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
I + ++N G VL+ GR E+ +++ W
Sbjct: 221 IYECVKNGGKVLIPTFALGRAQEMCLLIDSYW 252
>gi|224009389|ref|XP_002293653.1| cleavage and polyadenylation specificity factor [Thalassiosira
pseudonana CCMP1335]
gi|220971053|gb|EED89389.1| cleavage and polyadenylation specificity factor [Thalassiosira
pseudonana CCMP1335]
Length = 347
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 59 EEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQT 118
+ E++ ++ KE+HL G L +F V D + + AR + ++ +++
Sbjct: 158 DTEVILAPTYHHAKEKHLAGSTLHKF----GVNADALLTMPGGARGNRSEAEMIESMMAA 213
Query: 119 LRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSG 152
LR +GNVL+ VD +GRVLEL +L++ W + G
Sbjct: 214 LRRDGNVLLPVDASGRVLELLLILDRYWERQRLG 247
>gi|39645207|gb|AAH13904.2| CPSF3L protein, partial [Homo sapiens]
Length = 429
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
+VY D+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+
Sbjct: 2 VVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVER 60
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +LE W
Sbjct: 61 GGKVLIPVFALGRAQELCILLETFW 85
>gi|406865774|gb|EKD18815.1| RNA-metabolising metallo-beta-lactamase [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1331
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKER------------HLNGCVLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E V+++ +PT +I +
Sbjct: 190 GTIWHI-QHGLESIVYAVDWNQARENVLAGAAWLGGAGAGGAEVIEQLRKPTALICSSRG 248
Query: 97 AIYQQ--ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
R RDE L+ I ++ G VL+ D++ RVLEL ++LE +WR +
Sbjct: 249 GERHALPGGRAKRDELLLEMIKTSVSQGGIVLIPTDSSARVLELAYLLEHVWRTE 303
>gi|328766828|gb|EGF76880.1| hypothetical protein BATDEDRAFT_14507, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 475
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 60 EEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTL 119
+ +VY D+N+ +RHL +D P ++IT+T A + +R R+ + + +
Sbjct: 180 QSVVYTGDYNMTPDRHLGAAQIDG-CEPDLIITETTYATTIRDSKRARERDFLKKVHDCV 238
Query: 120 RNNGNVLVAVDTAGRVLELTHMLEQLWRNKD 150
G VLV V GR EL ++E WR D
Sbjct: 239 SGGGKVLVPVFALGRAQELLILIESYWRRMD 269
>gi|221502797|gb|EEE28511.1| RNA-metabolising metallo-beta-lactamase domain-containing protein,
putative [Toxoplasma gondii VEG]
Length = 1072
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+K G+ +VY DFN +RHL L +RP V+I++ A + + +RT +
Sbjct: 311 LKLGKASVVYTGDFNTIPDRHLGSAALP-CLRPDVLISECTYASFVRPSKRTVERDFCAV 369
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ TL G VL+ V GR EL +LE W
Sbjct: 370 VHDTLTKGGKVLIPVFAVGRAQELCMLLENYW 401
>gi|221482308|gb|EEE20663.1| RNA-metabolising metallo-beta-lactamase domain-containing protein,
putative [Toxoplasma gondii GT1]
Length = 1090
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+K G+ +VY DFN +RHL L +RP V+I++ A + + +RT +
Sbjct: 319 LKLGKASVVYTGDFNTIPDRHLGSAALP-CLRPDVLISECTYASFVRPSKRTVERDFCAV 377
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ TL G VL+ V GR EL +LE W
Sbjct: 378 VHDTLTKGGKVLIPVFAVGRAQELCMLLENYW 409
>gi|237842097|ref|XP_002370346.1| RNA-metabolising metallo-beta-lactamase domain-containing protein
[Toxoplasma gondii ME49]
gi|211968010|gb|EEB03206.1| RNA-metabolising metallo-beta-lactamase domain-containing protein
[Toxoplasma gondii ME49]
Length = 1089
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+K G+ +VY DFN +RHL L +RP V+I++ A + + +RT +
Sbjct: 311 LKLGKASVVYTGDFNTIPDRHLGSAALP-CLRPDVLISECTYASFVRPSKRTVERDFCAV 369
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ TL G VL+ V GR EL +LE W
Sbjct: 370 VHDTLTKGGKVLIPVFAVGRAQELCMLLENYW 401
>gi|256084683|ref|XP_002578556.1| cleavage and polyadenylation specificity factor [Schistosoma
mansoni]
gi|350644758|emb|CCD60512.1| cleavage and polyadenylation specificity factor,putative
[Schistosoma mansoni]
Length = 619
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G +V+ G ++Y D+N+ +RHL + R RP ++IT++ A + +RTR+
Sbjct: 160 GAAMFLVRVGTNSVLYTGDYNMTPDRHLGAAWVSR-CRPDLLITESTYATTIRDSKRTRE 218
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ I + G VL+ V GR EL +LE W
Sbjct: 219 REFLEKIHARVEAGGKVLIPVFALGRAQELCILLETYW 256
>gi|326473038|gb|EGD97047.1| cleavage and polyadenylylation specificity factor [Trichophyton
tonsurans CBS 112818]
Length = 1024
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 15/113 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD++ +E + G V+++ +PT +I+
Sbjct: 204 GTIWHI-QHGMESIVYAVDWSQARENVIAGAAWFGSSIGSGTEVIEQLRKPTALISSASG 262
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
R+ RD L+ I G VL+ D++ RVLE+ ++LE WR
Sbjct: 263 GDKFALPGGRKKRDGLLLDMIRSCAAKGGTVLLPTDSSARVLEIAYVLEHAWR 315
>gi|294656507|ref|XP_002770276.1| DEHA2D07304p [Debaryomyces hansenii CBS767]
gi|199431523|emb|CAR65632.1| DEHA2D07304p [Debaryomyces hansenii CBS767]
Length = 959
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 12/105 (11%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLN---------GCVLDRFIRPTVVITDTMSAIY 99
G W I + E+I+Y +N K+ LN G L + +RPTV+IT+T
Sbjct: 158 GTFWLITRR-LEKIIYAPSWNHSKDSFLNSASFLSSSSGNPLSQLMRPTVLITNTDLGST 216
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQ 144
++RT E+ + + TL N G VL+ +GR LEL H+++Q
Sbjct: 217 MSHKKRT--EKFLNLVDATLANGGAVLLPTSLSGRFLELLHLIDQ 259
>gi|10435258|dbj|BAB14541.1| unnamed protein product [Homo sapiens]
Length = 278
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+K G E +VY D+N+ +RHL +D+ RP ++IT++ A + +R R+ +
Sbjct: 144 IKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKK 202
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTH 140
+ +T+ G VL+ V GR E H
Sbjct: 203 VHETVERGGKVLIPVFALGRAQEHLH 228
>gi|300706889|ref|XP_002995677.1| hypothetical protein NCER_101357 [Nosema ceranae BRL01]
gi|239604869|gb|EEQ82006.1| hypothetical protein NCER_101357 [Nosema ceranae BRL01]
Length = 500
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
F+ET K+DE + + G I G V+ G +VY D+N+ +RHL G
Sbjct: 135 FNET-YKHDENFFITPYYAGHVI--GAAMFHVQVGSRSVVYTGDYNMTPDRHL-GAASIP 190
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
+RP ++IT++ + R++++ +L + N G VL+ + GR EL +L+
Sbjct: 191 CLRPDLLITESTYGSITRDCRKSKEREFFKAVLDCVSNGGKVLIPIFALGRAQELCLLLD 250
Query: 144 QLW 146
W
Sbjct: 251 SHW 253
>gi|326477880|gb|EGE01890.1| cleavage and polyadenylylation specificity factor [Trichophyton
equinum CBS 127.97]
Length = 1024
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD++ +E + G V+++ +PT +I
Sbjct: 204 GTIWHI-QHGMESIVYAVDWSQARENVIAGAAWFGSSIGSGTEVIEQLRKPTALICSASG 262
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
R+ RD L+ I G VL+ D++ RVLE+ ++LE WR
Sbjct: 263 GDKFALPGGRKKRDGLLLDMIRSCAAKGGTVLLPTDSSARVLEIAYVLEHAWR 315
>gi|327408312|emb|CCA30123.1| unnamed protein product [Neospora caninum Liverpool]
Length = 1183
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+K G +VY DFN +RHL L +RP V+I++ A + + +RT +
Sbjct: 440 LKIGNTSVVYTGDFNTIPDRHLGSASLP-CLRPDVLISECTYASFVRPSKRTVERDFCAV 498
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ TL G VL+ V GR EL +LE W
Sbjct: 499 VHDTLTKGGKVLIPVFAVGRAQELCMLLENYW 530
>gi|302661813|ref|XP_003022569.1| hypothetical protein TRV_03308 [Trichophyton verrucosum HKI 0517]
gi|291186522|gb|EFE41951.1| hypothetical protein TRV_03308 [Trichophyton verrucosum HKI 0517]
Length = 1024
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD++ +E + G V+++ +PT +I
Sbjct: 204 GTIWHI-QHGMESIVYAVDWSQARENVIAGAAWFGSSIGSGTEVIEQLRKPTALICSASG 262
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
R+ RD L+ I G VL+ D++ RVLE+ ++LE WR
Sbjct: 263 GDKFALPGGRKKRDGLLLDMIRSCAAKGGTVLLPTDSSARVLEIAYVLEHAWR 315
>gi|156042700|ref|XP_001587907.1| hypothetical protein SS1G_11148 [Sclerotinia sclerotiorum 1980]
gi|154695534|gb|EDN95272.1| hypothetical protein SS1G_11148 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 936
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 15/113 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKER------------HLNGCVLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E V+++ +PT +I +
Sbjct: 164 GTIWHI-QHGLESIVYAVDWNQARENVLAGAAWLGGAGAGGAEVIEQLRKPTALICSSKG 222
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
+ R RDE L+ I +++ G VL+ D+ R++EL ++LE WR
Sbjct: 223 GERVALPGGRAKRDELLLDMIKSSIKRGGIVLIPTDSGARMMELAYLLEHAWR 275
>gi|302501173|ref|XP_003012579.1| hypothetical protein ARB_01192 [Arthroderma benhamiae CBS 112371]
gi|291176138|gb|EFE31939.1| hypothetical protein ARB_01192 [Arthroderma benhamiae CBS 112371]
Length = 991
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD++ +E + G V+++ +PT +I
Sbjct: 171 GTIWHI-QHGMESIVYAVDWSQARENVIAGAAWFGSSIGSGTEVIEQLRKPTALICSASG 229
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
R+ RD L+ I G VL+ D++ RVLE+ ++LE WR
Sbjct: 230 GDKFALPGGRKKRDGLLLDMIRSCAAKGGTVLLPTDSSARVLEIAYVLEHAWR 282
>gi|339244969|ref|XP_003378410.1| putative metallo-beta-lactamase domain protein [Trichinella
spiralis]
gi|316972680|gb|EFV56345.1| putative metallo-beta-lactamase domain protein [Trichinella
spiralis]
Length = 562
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 67 DFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVL 126
DFN+ +RHL +DR RP V+I+++ A + +R R+ + + + N G VL
Sbjct: 145 DFNMTPDRHLGPAEIDR-CRPDVLISESTYATTIRDSKRARERDFLKKVHDCINNGGKVL 203
Query: 127 VAVDTAGRVLELTHMLEQLW 146
+ V GR EL +LE W
Sbjct: 204 IPVFALGRAQELCILLESYW 223
>gi|347838796|emb|CCD53368.1| similar to cleavage and polyadenylation specificity factor subunit
2 [Botryotinia fuckeliana]
Length = 934
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKER------------HLNGCVLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E V+++ +PT +I +
Sbjct: 164 GTIWHI-QHGLESIVYAVDWNQARENVLAGAAWLGGAGAGGAEVIEQLRKPTALICSSKG 222
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD 150
+ R RDE L+ I ++ G VL+ D+ R++EL ++LE WR ++
Sbjct: 223 GERVALPGGRAKRDELLLDMIRSSISRGGIVLIPTDSGARMMELAYLLEHAWRTEN 278
>gi|123439147|ref|XP_001310348.1| RNA-metabolising metallo-beta-lactamase family protein [Trichomonas
vaginalis G3]
gi|121892114|gb|EAX97418.1| RNA-metabolising metallo-beta-lactamase family protein [Trichomonas
vaginalis G3]
Length = 679
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 51 IWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR-----FIRPTVVITDTMSAIYQQARRR 105
+W + +G + ++Y DF+L+ ERHL G + + IRP V+I ++ + + R
Sbjct: 164 MWLVEIDGVK-VLYTGDFSLENERHLQGAEIPKSLSGEIIRPDVLIMESTHGLARIESRV 222
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R+ R + N+ + ++ G L+ + GR EL +L++ W +
Sbjct: 223 DREYRFIDNVTKIIKRGGRCLIPIFALGRAQELLIILDEYWES 265
>gi|392580514|gb|EIW73641.1| hypothetical protein TREMEDRAFT_67471 [Tremella mesenterica DSM
1558]
Length = 944
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 9/110 (8%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR---------FIRPTVVITDTMSAIY 99
G ++KI ++Y V N ERHL+G V + +RP ++I + A
Sbjct: 190 GTLFKIRSPTSGTVLYAVGMNHTGERHLDGMVSGQGGPSGYEEGVLRPDLLIVEGSRATV 249
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+RR R+ L+ + TL + +VL+ VD + R+LEL + +Q W K
Sbjct: 250 VNPKRRERETALIDVVSSTLEASRSVLMPVDPSPRLLELLILFDQHWTFK 299
>gi|154292337|ref|XP_001546744.1| hypothetical protein BC1G_14624 [Botryotinia fuckeliana B05.10]
Length = 901
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 15/118 (12%)
Query: 47 FTGPIWKIVKEGEEEIVYGVDFNLKKER------------HLNGCVLDRFIRPTVVITDT 94
G IW I + G E IVY VD+N +E V+++ +PT +I +
Sbjct: 162 LGGTIWHI-QHGLESIVYAVDWNQARENVLAGAAWLGGAGAGGAEVIEQLRKPTALICSS 220
Query: 95 MSA--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD 150
+ R RDE L+ I ++ G VL+ D+ R++EL ++LE WR ++
Sbjct: 221 KGGERVALPGGRAKRDELLLDMIRSSISRGGIVLIPTDSGARMMELAYLLEHAWRTEN 278
>gi|327308534|ref|XP_003238958.1| cleavage and polyadenylylation specificity factor [Trichophyton
rubrum CBS 118892]
gi|326459214|gb|EGD84667.1| cleavage and polyadenylylation specificity factor [Trichophyton
rubrum CBS 118892]
Length = 1024
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD++ +E + G V+++ +PT +I
Sbjct: 204 GTIWHI-QHGMESIVYAVDWSQARENVIAGAAWFGSSIGSGTEVIEQLRKPTALICSASG 262
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
R+ RD L+ I G VL+ D++ R+LE+ ++LE WR
Sbjct: 263 GDKFALPGGRKKRDGLLLDMIRSCAAKGGTVLLPTDSSARILEIAYVLEHAWR 315
>gi|428172766|gb|EKX41673.1| hypothetical protein GUITHDRAFT_74597 [Guillardia theta CCMP2712]
Length = 615
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G IV+ ++Y D++ +++RHL + ++ V++ ++ +
Sbjct: 166 WCYNAGHVLGACMFIVQIAGVRLLYTGDYSRQEDRHLMAAEMPS-VQVHVLVVESTYGVQ 224
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
RR+R++R + ++ TL+ G VL+ V GR EL +L++ WR
Sbjct: 225 THEPRRSREKRFLEAVVSTLQLGGRVLLPVFAIGRAQELLLLLDEYWR 272
>gi|357117889|ref|XP_003560694.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Brachypodium distachyon]
Length = 690
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V I+Y D++ +++RHL + +F P V I ++ +
Sbjct: 161 WCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRHLKAAEIPQF-SPDVCIVESTYGVQ 219
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
Q R R++R I T+ G VL+ GR EL +L++ W N
Sbjct: 220 QHQPRHVREKRFTDAIHNTVSQGGRVLIPAFALGRAQELLLILDEYWSN 268
>gi|357114659|ref|XP_003559115.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Brachypodium distachyon]
Length = 768
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V I+Y D++ +++RHL + +F P V I ++ +
Sbjct: 239 WCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRHLKAAEIPQF-SPDVCIVESTYGVQ 297
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
Q R R++R I T+ G VL+ GR EL +L++ W N
Sbjct: 298 QHQPRHVREKRFTDAIHNTVSQGGRVLIPAFALGRAQELLLILDEYWSN 346
>gi|358333178|dbj|GAA51732.1| integrator complex subunit 11 [Clonorchis sinensis]
Length = 649
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G +++ G + ++Y D+N+ +RHL + R P ++IT++ A + +R R+
Sbjct: 229 GAAMFLIRVGSQSVLYTGDYNMTPDRHLGAAWVSRCC-PDILITESTYATTIRDSKRARE 287
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ I + G VL+ V GR EL +LE W
Sbjct: 288 REFLEKIHARVEAGGKVLIPVFALGRAQELCILLETYW 325
>gi|195143691|ref|XP_002012831.1| GL23717 [Drosophila persimilis]
gi|194101774|gb|EDW23817.1| GL23717 [Drosophila persimilis]
Length = 597
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 58 GEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQ 117
G + +VY D+N+ +RHL +D RP ++I+++ A + +R R+ + + +
Sbjct: 169 GSQSVVYTGDYNMTPDRHLGAAWIDN-ARPDLLISESTYATTIRDSKRCRERDFLKKVHE 227
Query: 118 TLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ G VL+ V GR EL +LE W
Sbjct: 228 CVARGGKVLIPVFALGRAQELCILLETYW 256
>gi|356502382|ref|XP_003519998.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Glycine max]
Length = 516
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Query: 41 AYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ 100
AY G K G+ E+VY D+N+ +RHL +DR +R ++IT++ A
Sbjct: 151 AYYAGHVIGAAMFYAKVGDAEMVYTGDYNMTPDRHLGAAQIDR-LRLDLLITESTYATTI 209
Query: 101 QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ R R+ + + + + G VL+ GR EL +LE W
Sbjct: 210 RDSRYAREREFLKAVHKCVSCGGKVLIPTFALGRAQELCILLEDYW 255
>gi|321461562|gb|EFX72593.1| hypothetical protein DAPPUDRAFT_308207 [Daphnia pulex]
Length = 689
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 64/135 (47%), Gaps = 5/135 (3%)
Query: 12 FKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLK 71
+++ ++ + FHE K + G WAY G +++ +++Y DF+ +
Sbjct: 134 LEASMEKIEVINFHEEK----DVGGVRFWAYNAGHVLGAAMFMIEIAGVKVLYTGDFSRQ 189
Query: 72 KERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDT 131
++RHL + +RP ++IT++ + +R R+ R I + + G L+ V
Sbjct: 190 EDRHLMAAEIPT-VRPDILITESTYGTHIHEKREDRESRFTGLIHEIVNRGGRCLIPVFA 248
Query: 132 AGRVLELTHMLEQLW 146
GR EL +L++ W
Sbjct: 249 LGRAQELLLILDEYW 263
>gi|213512037|ref|NP_001133354.1| cleavage and polyadenylation specificity factor subunit 3 [Salmo
salar]
gi|209151738|gb|ACI33081.1| Cleavage and polyadenylation specificity factor subunit 3 [Salmo
salar]
Length = 690
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +I+Y DF+ +++RHL +
Sbjct: 147 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPS 202
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
++P ++IT++ + +R R+ R I + G L+ V GR EL +L+
Sbjct: 203 -VKPDILITESTYGTHIHEKREEREARFCNTIHDIVNREGRCLIPVFALGRAQELLLILD 261
Query: 144 QLWRN 148
+ W+N
Sbjct: 262 EYWQN 266
>gi|356525973|ref|XP_003531594.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Glycine max]
Length = 688
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V ++Y D++ +++RHL + +F P V I ++ +
Sbjct: 160 WCYAAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEIPQF-SPDVCIIESTYGVQ 218
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R TR++R I T+ G VL+ GR EL +L++ W N
Sbjct: 219 HHQPRHTREKRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWAN 267
>gi|378756419|gb|EHY66443.1| hypothetical protein NERG_00083 [Nematocida sp. 1 ERTm2]
Length = 730
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G IWKI ++ E+E + N +KE HL+G + +P VI ++ + +Q+ RR RD
Sbjct: 151 GAIWKI-RKNEQEWIICDKINHRKEAHLDGLDISNISKPLGVIVNSTQVVKEQSTRRMRD 209
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHML 142
+ L+ ++++ + NG V + + ++LE+ L
Sbjct: 210 KELVDSVVKCINGNGKVFIPTGYS-QLLEIAMTL 242
>gi|167395302|ref|XP_001733549.1| Cleavage and polyadenylation specificity factor subunit [Entamoeba
dispar SAW760]
gi|165894214|gb|EDR22276.1| Cleavage and polyadenylation specificity factor subunit, putative
[Entamoeba dispar SAW760]
Length = 736
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE + EY W + G ++ +I+Y DF+ + +RHL +
Sbjct: 147 FHELQ----EYNGMKIWCFNAGHILGAAMFCIEINGVKILYTGDFSGETDRHLQAAEVPP 202
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
F + V++ ++ I +Q R R+ + I++ L+ G L+ V + GR E +LE
Sbjct: 203 F-QIDVMMCESTYGIIEQESRIDRENAFIRQIMEILKRGGKCLIPVFSLGRAQEFELILE 261
Query: 144 QLWRN 148
+ W+N
Sbjct: 262 EYWQN 266
>gi|326487902|dbj|BAJ89790.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 704
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V I+Y D++ +++RHL + +F P + I ++ +
Sbjct: 176 WCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRHLKAAEIPQF-SPDICIIESTYGVQ 234
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
Q R R++R I T+ G VL+ GR EL +L++ W N
Sbjct: 235 QHQPRHVREKRFTDAIHNTVSQGGRVLIPAFALGRAQELLLILDEYWSN 283
>gi|407041778|gb|EKE40943.1| cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Entamoeba nuttalli P19]
Length = 751
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE + EY W + G ++ +I+Y DF+ + +RHL +
Sbjct: 147 FHELQ----EYNGMKIWCFNAGHILGAAMFCIEINGVKILYTGDFSGETDRHLQAAEVPP 202
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
F + V++ ++ I +Q R R+ + I++ L+ G L+ V + GR E +LE
Sbjct: 203 F-QIDVMMCESTYGIIEQESRIDRENAFIRQIIEILKRGGKCLIPVFSLGRAQEFELILE 261
Query: 144 QLWRN 148
+ W+N
Sbjct: 262 EYWQN 266
>gi|326495416|dbj|BAJ85804.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 704
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V I+Y D++ +++RHL + +F P + I ++ +
Sbjct: 176 WCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRHLKAAEIPQF-SPDICIIESTYGVQ 234
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
Q R R++R I T+ G VL+ GR EL +L++ W N
Sbjct: 235 QHQPRHVREKRFTDAIHNTVSQGGRVLIPAFALGRAQELLLILDEYWSN 283
>gi|326503296|dbj|BAJ99273.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 693
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V I+Y D++ +++RHL + +F P + I ++ +
Sbjct: 164 WCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRHLKAAEVPQF-SPDICIIESTYGVQ 222
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
Q R R++R I T+ G VL+ GR EL +L++ W N
Sbjct: 223 QHQPRHVREKRFTDAIHNTVSQGGRVLIPAYALGRAQELLLILDEYWSN 271
>gi|406604299|emb|CCH44271.1| Cleavage and polyadenylation specificity factor subunit
[Wickerhamomyces ciferrii]
Length = 795
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVL---DRFIRPTVVITDTMSAIYQQARRR 105
G IW K E+I+Y +N K+ LNG L +RP+V+IT SAI +
Sbjct: 151 GTIWAFNK-NPEKIIYAPQWNHSKDSFLNGADLLQNSTLMRPSVIITS--SAIGSVLPHK 207
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQ 144
R E+ + TL G VL+ GR+LEL H++++
Sbjct: 208 KRVEKFFELVDATLGRGGTVLLPTSIGGRMLELVHLIDE 246
>gi|67479721|ref|XP_655242.1| cleavage and polyadenylation specificity factor 73 kDa subunit
[Entamoeba histolytica HM-1:IMSS]
gi|56472366|gb|EAL49856.1| cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Entamoeba histolytica HM-1:IMSS]
gi|449703858|gb|EMD44220.1| cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Entamoeba histolytica KU27]
Length = 755
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE + EY W + G ++ +I+Y DF+ + +RHL +
Sbjct: 147 FHELQ----EYNGMKIWCFNAGHILGAAMFCIEINGVKILYTGDFSGETDRHLQAAEVPP 202
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
F + V++ ++ I +Q R R+ + I++ L+ G L+ V + GR E +LE
Sbjct: 203 F-QIDVMMCESTYGIIEQESRIDRENAFIRQIIEILKRGGKCLIPVFSLGRAQEFELILE 261
Query: 144 QLWRN 148
+ W+N
Sbjct: 262 EYWQN 266
>gi|448122146|ref|XP_004204382.1| Piso0_000226 [Millerozyma farinosa CBS 7064]
gi|358349921|emb|CCE73200.1| Piso0_000226 [Millerozyma farinosa CBS 7064]
Length = 948
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 12/105 (11%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVL---------DRFIRPTVVITDTMSAIY 99
G W + ++ E+++Y +N K+ LN + +RPT +IT+T
Sbjct: 158 GTFWLLTRQ-LEKVIYAPAWNHSKDSFLNNATFLSSSTGNPSSQLLRPTALITNTDLGST 216
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQ 144
++RT E+ ++ + TL N G VL+ AGR LEL H+++Q
Sbjct: 217 MSHKKRT--EKFLSLVDATLANGGTVLLPTSLAGRFLELLHLVDQ 259
>gi|145507230|ref|XP_001439570.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124406765|emb|CAK72173.1| unnamed protein product [Paramecium tetraurelia]
Length = 484
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N +RHL G +D+ ++P +VI+++ A + +RTR+ + ++ + L G VL+
Sbjct: 166 YNSIADRHLGGAYIDQ-LQPDLVISESTYATIIRDSKRTRERNFLMHVQEVLDRGGKVLI 224
Query: 128 AVDTAGRVLELTHMLEQLWR 147
V GR EL+ +LE W+
Sbjct: 225 PVFALGRAQELSVLLESYWQ 244
>gi|297837375|ref|XP_002886569.1| hypothetical protein ARALYDRAFT_475225 [Arabidopsis lyrata subsp.
lyrata]
gi|297332410|gb|EFH62828.1| hypothetical protein ARALYDRAFT_475225 [Arabidopsis lyrata subsp.
lyrata]
Length = 693
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V I+Y D++ +++RHL L +F P + I ++ S +
Sbjct: 162 WCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRHLRAAELPQF-SPDICIIESTSGVQ 220
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R R++R I T+ G VL+ GR EL +L++ W N
Sbjct: 221 LHQSRHIREKRFTDVIHSTVAQGGRVLIPAFALGRAQELLLILDEYWAN 269
>gi|15219848|ref|NP_176297.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|30696512|ref|NP_849835.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|79320389|ref|NP_001031215.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|75262219|sp|Q9C952.1|CPSF3_ARATH RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3-I; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit I; Short=AtCPSF73-I;
Short=CPSF 73 kDa subunit I
gi|12323330|gb|AAG51638.1|AC018908_4 putative cleavage and polyadenylation specificity factor;
72745-70039 [Arabidopsis thaliana]
gi|23297661|gb|AAN13003.1| putative cleavage and polyadenylation specificity factor
[Arabidopsis thaliana]
gi|24415578|gb|AAN41458.1| putative cleavage and polyadenylation specificity factor 73 kDa
subunit [Arabidopsis thaliana]
gi|222422865|dbj|BAH19419.1| AT1G61010 [Arabidopsis thaliana]
gi|222423059|dbj|BAH19511.1| AT1G61010 [Arabidopsis thaliana]
gi|332195645|gb|AEE33766.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|332195646|gb|AEE33767.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|332195647|gb|AEE33768.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
Length = 693
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V I+Y D++ +++RHL L +F P + I ++ S +
Sbjct: 162 WCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRHLRAAELPQF-SPDICIIESTSGVQ 220
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R R++R I T+ G VL+ GR EL +L++ W N
Sbjct: 221 LHQSRHIREKRFTDVIHSTVAQGGRVLIPAFALGRAQELLLILDEYWAN 269
>gi|18377654|gb|AAL66977.1| putative cleavage and polyadenylation specificity factor
[Arabidopsis thaliana]
Length = 693
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V I+Y D++ +++RHL L +F P + I ++ S +
Sbjct: 162 WCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRHLRAAELPQF-SPDICIIESTSGVQ 220
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R R++R I T+ G VL+ GR EL +L++ W N
Sbjct: 221 LHQSRHIREKRFTDVIHSTVAQGGRVLIPAFALGRAQELLLILDEYWAN 269
>gi|115456655|ref|NP_001051928.1| Os03g0852900 [Oryza sativa Japonica Group]
gi|27573349|gb|AAO20067.1| putative cleavage and polyadenylation specifity factor protein
[Oryza sativa Japonica Group]
gi|29126360|gb|AAO66552.1| putative cleavage and polyadenylation specifity factor [Oryza
sativa Japonica Group]
gi|108712151|gb|ABF99946.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit,
putative, expressed [Oryza sativa Japonica Group]
gi|113550399|dbj|BAF13842.1| Os03g0852900 [Oryza sativa Japonica Group]
gi|125588676|gb|EAZ29340.1| hypothetical protein OsJ_13407 [Oryza sativa Japonica Group]
Length = 700
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V ++Y D++ +++RHL L +F P + I ++ +
Sbjct: 171 WCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLKAAELPQF-SPDICIIESTYGVQ 229
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
Q R R++R I T+ G VL+ GR EL +L++ W N
Sbjct: 230 QHQPRHVREKRFTDVIHTTVSQGGRVLIPAFALGRAQELLLILDEYWAN 278
>gi|195995883|ref|XP_002107810.1| hypothetical protein TRIADDRAFT_19764 [Trichoplax adhaerens]
gi|190588586|gb|EDV28608.1| hypothetical protein TRIADDRAFT_19764 [Trichoplax adhaerens]
Length = 636
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FH+ K E W Y G +++ +I+Y DF+ +++RHL +
Sbjct: 151 FHQEK----EVNGIKFWCYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPS 206
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
++P V+I ++ ++ +R R++R + + + G L+ V GR EL +L+
Sbjct: 207 -VKPDVLIIESTYGVHIHEKREIREKRFTSTVHDIVNRGGRCLIPVFALGRAQELLLILD 265
Query: 144 QLWRN 148
+ W N
Sbjct: 266 EYWSN 270
>gi|345563625|gb|EGX46611.1| hypothetical protein AOL_s00097g515 [Arthrobotrys oligospora ATCC
24927]
Length = 791
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 27 TKIKYDEYGNHSSWA---YGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
+ I Y + +HSS A Y G +++ +I++ D++ + +RHL L +
Sbjct: 147 SAIDYYQTLHHSSIAITPYPAGHVLGAAMFLIEIAGLKILFTGDYSREDDRHLVSASLPK 206
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++IT++ R ++ R ++ + L G VL+ V GR EL +LE
Sbjct: 207 HIKPDILITESTYGTASHMPRPEKEARFISLVTSILDRGGRVLMPVFALGRAQELLLILE 266
Query: 144 QLW 146
+ W
Sbjct: 267 EYW 269
>gi|388507878|gb|AFK42005.1| unknown [Medicago truncatula]
Length = 534
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 41 AYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ 100
AY G VK G+ E+VY D+N+ +RHL +DR +R ++IT++ A
Sbjct: 151 AYYAGHVIGAAMFYVKVGDAEMVYTGDYNMTPDRHLGAAQIDR-LRLDLLITESTYATTI 209
Query: 101 QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + R+ + + + + G VL+ GR EL +L+ W
Sbjct: 210 RDSKYAREREFLKAVHKCVSGGGKVLIPTFALGRAQELRILLDDYW 255
>gi|125546484|gb|EAY92623.1| hypothetical protein OsI_14368 [Oryza sativa Indica Group]
Length = 700
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V ++Y D++ +++RHL L +F P + I ++ +
Sbjct: 171 WCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLKAAELPQF-SPDICIIESTYGVQ 229
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
Q R R++R I T+ G VL+ GR EL +L++ W N
Sbjct: 230 QHQPRHVREKRFTDVIHTTVSQGGRVLIPAFALGRAQELLLILDEYWAN 278
>gi|348518441|ref|XP_003446740.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Oreochromis niloticus]
Length = 686
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 147 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPS 202
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
++P ++IT++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 203 -VKPDILITESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILD 261
Query: 144 QLWRN 148
+ W+N
Sbjct: 262 EYWQN 266
>gi|55250298|gb|AAH85402.1| Cleavage and polyadenylation specific factor 3 [Danio rerio]
gi|182889046|gb|AAI64567.1| Cpsf3 protein [Danio rerio]
Length = 690
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 147 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPS 202
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
++P ++IT++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 203 -VKPDILITESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILD 261
Query: 144 QLWRN 148
+ W+N
Sbjct: 262 EYWQN 266
>gi|432954006|ref|XP_004085503.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Oryzias latipes]
Length = 686
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 147 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPS 202
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
++P ++IT++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 203 -VKPDILITESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILD 261
Query: 144 QLWRN 148
+ W+N
Sbjct: 262 EYWQN 266
>gi|51467896|ref|NP_001003836.1| cleavage and polyadenylation specificity factor subunit 3 [Danio
rerio]
gi|49619053|gb|AAT68111.1| cleavage and polyadenylation specificity factor 3 [Danio rerio]
Length = 690
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 147 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPS 202
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
++P ++IT++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 203 -VKPDILITESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILD 261
Query: 144 QLWRN 148
+ W+N
Sbjct: 262 EYWQN 266
>gi|47229058|emb|CAG03810.1| unnamed protein product [Tetraodon nigroviridis]
Length = 698
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 67 DFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVL 126
D+N+ +RHL +D+ RP ++I+++ A + +R R+ + + +T+ G VL
Sbjct: 246 DYNMTPDRHLGAAWIDK-CRPDILISESTYATTIRDSKRCRERDFLKKVHETIERGGKVL 304
Query: 127 VAVDTAGRVLELTHMLEQLW 146
+ V GR EL +LE W
Sbjct: 305 IPVFALGRAQELCILLETFW 324
>gi|448124505|ref|XP_004204939.1| Piso0_000226 [Millerozyma farinosa CBS 7064]
gi|358249572|emb|CCE72638.1| Piso0_000226 [Millerozyma farinosa CBS 7064]
Length = 948
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 12/105 (11%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVL---------DRFIRPTVVITDTMSAIY 99
G W + ++ E+++Y +N K+ LN + +RPT +IT+T
Sbjct: 158 GTFWLLTRQ-LEKVIYAPAWNHSKDSFLNNATFLSSSTGNPSSQLLRPTALITNTDLGST 216
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQ 144
++RT E+ + + TL N G VL+ AGR LEL H+++Q
Sbjct: 217 MSHKKRT--EKFLQLVDATLANGGTVLLPTSLAGRFLELLHLVDQ 259
>gi|85000301|ref|XP_954869.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65303015|emb|CAI75393.1| hypothetical protein, conserved [Theileria annulata]
Length = 663
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+++Y DFN ++HL G + P V+I ++ A + + +R + L T + +TL
Sbjct: 265 KVLYTGDFNTIPDKHL-GPAKVPTLEPDVLICESTYATFVRQSKRATEMELCTTVHETLI 323
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLWRN 148
N G VL+ V GR EL +L W N
Sbjct: 324 NGGKVLIPVFAVGRAQELAIILNNYWNN 351
>gi|410928245|ref|XP_003977511.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Takifugu rubripes]
Length = 696
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 147 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPS 202
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
++P ++IT++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 203 -VKPDILITESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILD 261
Query: 144 QLWRN 148
+ W+N
Sbjct: 262 EYWQN 266
>gi|256086716|ref|XP_002579538.1| cleavage and polyadenylation specificity factor-related
[Schistosoma mansoni]
Length = 670
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 9/120 (7%)
Query: 29 IKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPT 88
IK+ Y H+ G +F +++ +I+Y DF+ +++RHL C IRP
Sbjct: 153 IKFSAY--HAGHVLGAAMF------LIEIAGVKILYTGDFSRQEDRHLM-CAEIPPIRPD 203
Query: 89 VVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
V+IT+ I+ +R R+ R + + + G L+ GR EL +L++ W N
Sbjct: 204 VLITEATYGIHIHDKREEREARFTSLVHDIVTRGGRCLIPAFALGRAQELMLILDEYWDN 263
>gi|302694097|ref|XP_003036727.1| hypothetical protein SCHCODRAFT_72177 [Schizophyllum commune H4-8]
gi|300110424|gb|EFJ01825.1| hypothetical protein SCHCODRAFT_72177 [Schizophyllum commune H4-8]
Length = 913
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR--------FIRPTVVITDTMSAIYQ 100
G IWKI I+Y V+ N +ERHL+G VL R RP + ITD A
Sbjct: 210 GTIWKIRSPSSGTILYAVNMNHMRERHLDGTVLIRQAGGIFEPLARPDLFITDADRANVI 269
Query: 101 QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+RR+ RD L+ + L + ++L+ D+ R+LEL +L+Q W
Sbjct: 270 TSRRKDRDASLIDTVTTALSSRSSLLLPCDSGTRLLELLVLLDQHW 315
>gi|360043111|emb|CCD78523.1| cleavage and polyadenylation specificity factor-related
[Schistosoma mansoni]
Length = 670
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 9/120 (7%)
Query: 29 IKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPT 88
IK+ Y H+ G +F +++ +I+Y DF+ +++RHL C IRP
Sbjct: 153 IKFSAY--HAGHVLGAAMF------LIEIAGVKILYTGDFSRQEDRHLM-CAEIPPIRPD 203
Query: 89 VVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
V+IT+ I+ +R R+ R + + + G L+ GR EL +L++ W N
Sbjct: 204 VLITEATYGIHIHDKREEREARFTSLVHDIVTRGGRCLIPAFALGRAQELMLILDEYWDN 263
>gi|340509014|gb|EGR34593.1| hypothetical protein IMG5_006210 [Ichthyophthirius multifiliis]
Length = 456
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
++VY DF+ +RHL +D+ I P ++I++ + +R R+ + + +T+
Sbjct: 196 KVVYTGDFHSNADRHLGAAWIDK-INPDLLISECTYGTIVRESKRARERTFLQQVQETID 254
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLWR 147
G VL+ V GR EL +LE W+
Sbjct: 255 QGGKVLIPVFALGRAQELCVLLETYWQ 281
>gi|157117185|ref|XP_001652976.1| cleavage and polyadenylation specificity factor [Aedes aegypti]
gi|108876120|gb|EAT40345.1| AAEL007904-PA [Aedes aegypti]
Length = 687
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
WAY G +++ +I+Y DF+ +++RHL + ++P V+IT++ +
Sbjct: 159 WAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPA-MKPDVLITESTYGTH 217
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+R R+ R + + + ++ G L+ V GR EL +L++ W
Sbjct: 218 IHEKREDRESRFTSLVQKIVQQGGRCLIPVFALGRAQELLLILDEYW 264
>gi|146170679|ref|XP_001017643.2| metallo beta lactamase domain containing protein [Tetrahymena
thermophila]
gi|146145062|gb|EAR97398.2| metallo beta lactamase domain containing protein [Tetrahymena
thermophila SB210]
Length = 675
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
++VY DF+ +RHL +++ ++P ++I++ + +R R++ + I +T+
Sbjct: 204 KVVYTGDFHSNADRHLGAAWIEK-VKPDLLISECTYGTIIRDSKRAREKNFLKQIQETID 262
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLWRNKDS 151
G VL+ V GR EL +LE W+ S
Sbjct: 263 QGGKVLIPVFALGRAQELCILLETYWQRTQS 293
>gi|170060909|ref|XP_001866010.1| cleavage and polyadenylation specificity factor [Culex
quinquefasciatus]
gi|167879247|gb|EDS42630.1| cleavage and polyadenylation specificity factor [Culex
quinquefasciatus]
Length = 688
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
WAY G +++ +I+Y DF+ +++RHL + ++P V+IT++ +
Sbjct: 159 WAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPT-MKPDVLITESTYGTH 217
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+R R+ R + + + ++ G L+ V GR EL +L++ W
Sbjct: 218 IHEKREDRESRFTSLVQKIVQQGGRCLIPVFALGRAQELLLILDEYW 264
>gi|326508058|dbj|BAJ86772.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 704
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V I Y D++ +++RHL + +F P + I ++ +
Sbjct: 176 WCYTAGHVLGAAMFMVDIAGVRIRYTGDYSREEDRHLKAAEIPQF-SPDICIIESTYGVQ 234
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
Q R R++R I T+ G VL+ GR EL +L++ W N
Sbjct: 235 QHQPRHVREKRFTDAIHNTVSQGGRVLIPAFALGRAQELLLILDEYWSN 283
>gi|388498176|gb|AFK37154.1| unknown [Lotus japonicus]
Length = 315
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V ++Y D++ +++RHL +F P V I ++ +
Sbjct: 161 WCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAETPQF-SPDVCIIESTYGVQ 219
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R TR++R I T+ G VL+ GR EL +L++ W N
Sbjct: 220 HHQPRHTREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWTN 268
>gi|156552097|ref|XP_001605081.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Nasonia vitripennis]
Length = 688
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K D YG WAY G +++ +I+Y DF+ +++RHL +
Sbjct: 150 FHEEK---DVYGI-KFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPN 205
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
+ P V+IT++ + +R R+ R + + + G L+ V GR EL +L+
Sbjct: 206 -VHPDVLITESTYGTHIHEKREDREGRFTNLVHEIVNRGGRCLIPVFALGRAQELLLILD 264
Query: 144 QLW 146
+ W
Sbjct: 265 EYW 267
>gi|168026077|ref|XP_001765559.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683197|gb|EDQ69609.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 682
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 5/123 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FH+T E W Y G +V ++Y D++ +++RHL + R
Sbjct: 146 FHQTM----EVNGIRFWCYTAGHVLGAAMFMVDIAGMRVLYTGDYSCEEDRHLRAAEMPR 201
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
F P V I ++ + R R+ R + QT+ G VL+ GR EL +L+
Sbjct: 202 F-SPDVCIIESTYGVQIHQPRIMRERRFTDTVAQTVSQGGKVLIPAFALGRAQELLLILD 260
Query: 144 QLW 146
+ W
Sbjct: 261 EYW 263
>gi|300176709|emb|CBK24374.2| unnamed protein product [Blastocystis hominis]
Length = 711
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
++Y DF+ +++RHL + +R VVI ++ RR R++RL ++ TLR
Sbjct: 147 VLYTGDFSREEDRHLPAAEIPP-LRLNVVICESTYGRISHESRREREDRLTKEVVDTLRK 205
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L + W
Sbjct: 206 RGKVLIPVFALGRTQELLLLLNEYW 230
>gi|71027091|ref|XP_763189.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350142|gb|EAN30906.1| hypothetical protein TP03_0171 [Theileria parva]
Length = 678
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+++Y DFN ++HL G + P V+I ++ A + + +R + L T + TL
Sbjct: 265 KVLYTGDFNTIPDKHL-GPAKVPTLEPDVLICESTYATFVRQSKRATEMELCTTVHDTLI 323
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLWRN 148
N G VL+ V GR EL +L W N
Sbjct: 324 NGGKVLIPVFAVGRAQELAIILNNYWNN 351
>gi|357445375|ref|XP_003592965.1| Cleavage and polyadenylation specificity factor subunit 3-I
[Medicago truncatula]
gi|357445453|ref|XP_003593004.1| Cleavage and polyadenylation specificity factor subunit 3-I
[Medicago truncatula]
gi|355482013|gb|AES63216.1| Cleavage and polyadenylation specificity factor subunit 3-I
[Medicago truncatula]
gi|355482052|gb|AES63255.1| Cleavage and polyadenylation specificity factor subunit 3-I
[Medicago truncatula]
Length = 690
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V ++Y D++ +++RHL +F P V I ++ +
Sbjct: 162 WCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAETPQF-SPDVCIIESTYGVQ 220
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R TR++R I T+ G VL+ GR EL +L++ W N
Sbjct: 221 HHQPRHTREKRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWAN 269
>gi|347965534|ref|XP_321933.5| AGAP001224-PA [Anopheles gambiae str. PEST]
gi|333470467|gb|EAA01794.5| AGAP001224-PA [Anopheles gambiae str. PEST]
Length = 690
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
WAY G +++ ++Y DF+ +++RHL + +RP V+IT++ +
Sbjct: 160 WAYNAGHVLGAAMFMIEIAGIRVLYTGDFSRQEDRHLMAAEIPA-MRPDVLITESTYGTH 218
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW-RNKD 150
+R R+ R + + + ++ G L+ V GR EL +L++ W +N D
Sbjct: 219 IHEKREDRENRFTSLVQKIVQQGGRCLIPVFALGRAQELLLILDEYWSQNPD 270
>gi|303275006|ref|XP_003056813.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461165|gb|EEH58458.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 803
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
++Y D++ +RHL G L + P VVI+++ + R R++R + Q L
Sbjct: 180 VLYTGDYSRTPDRHLPGADLPS-VPPHVVISESTYGVSPHTPREEREKRFTDRVYQILNR 238
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLWR 147
G VL+ V GR EL +LE W+
Sbjct: 239 GGKVLLPVVALGRAQELLLILEDHWK 264
>gi|156379813|ref|XP_001631650.1| predicted protein [Nematostella vectensis]
gi|156218694|gb|EDO39587.1| predicted protein [Nematostella vectensis]
Length = 688
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FH+ K E G W Y G +++ +I+Y DF+ +++RHL +
Sbjct: 149 FHQEK----EVGGIKFWCYHAGHVLGACMFMLEIAGVKILYTGDFSRQEDRHLMAAEIPS 204
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I P V+I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 205 -ISPDVLIIESTYGTHIHEKREEREARFTGTVHDIVNRGGRCLIPVFALGRAQELLLILD 263
Query: 144 QLWRN 148
+ W+N
Sbjct: 264 EYWQN 268
>gi|356543411|ref|XP_003540154.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Glycine max]
Length = 689
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V ++Y D++ +++RHL +F P V I ++ +
Sbjct: 161 WCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAETPQF-SPDVCIIESTYGVQ 219
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R TR++R I T+ G VL+ GR EL +L++ W N
Sbjct: 220 HHQPRHTREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWAN 268
>gi|221106537|ref|XP_002161150.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Hydra magnipapillata]
Length = 677
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 5/123 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FH+ K E WAY G +++ I+Y DF+ +++RHL +
Sbjct: 138 FHQEK----EVSGIKFWAYNAGHVLGAAMFMIEIAGVNILYTGDFSRQEDRHLMSAEIPN 193
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I P V+I ++ + +R R++R + I + G L+ V GR EL +L+
Sbjct: 194 -ISPDVLIMESTYGTHVHEKREQREKRFTSTIHNIISRGGRCLIPVFALGRAQELLLILD 252
Query: 144 QLW 146
+ W
Sbjct: 253 EYW 255
>gi|302808975|ref|XP_002986181.1| hypothetical protein SELMODRAFT_234972 [Selaginella moellendorffii]
gi|300146040|gb|EFJ12712.1| hypothetical protein SELMODRAFT_234972 [Selaginella moellendorffii]
Length = 684
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V ++Y D++ +++RHL + F P V I ++ +
Sbjct: 163 WCYTAGHVLGAAMFMVDIAGIRVLYTGDYSREEDRHLKAAEMPEF-SPDVCIIESTYGVQ 221
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
R R++R I QT+ + G VL+ GR EL +L++ W
Sbjct: 222 IHQPRHVREKRFTETIAQTVSHGGRVLIPAFALGRAQELLLILDEYW 268
>gi|302806483|ref|XP_002984991.1| hypothetical protein SELMODRAFT_234671 [Selaginella moellendorffii]
gi|302825687|ref|XP_002994439.1| hypothetical protein SELMODRAFT_236963 [Selaginella moellendorffii]
gi|300137630|gb|EFJ04498.1| hypothetical protein SELMODRAFT_236963 [Selaginella moellendorffii]
gi|300147201|gb|EFJ13866.1| hypothetical protein SELMODRAFT_234671 [Selaginella moellendorffii]
Length = 677
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V ++Y D++ +++RHL + F P V I ++ +
Sbjct: 156 WCYTAGHVLGAAMFMVDIAGIRVLYTGDYSREEDRHLKAAEMPEF-SPDVCIIESTYGVQ 214
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
R R++R I QT+ + G VL+ GR EL +L++ W
Sbjct: 215 IHQPRHVREKRFTETIAQTVSHGGRVLIPAFALGRAQELLLILDEYW 261
>gi|242007002|ref|XP_002424331.1| Cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Pediculus humanus corporis]
gi|212507731|gb|EEB11593.1| Cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Pediculus humanus corporis]
Length = 692
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E WAY G +++ ++Y DF+ +++RHL +
Sbjct: 148 FHEEK----EIFGIKFWAYHAGHVLGAAMFMIEIAGVRVLYTGDFSRQEDRHLMAAEIPS 203
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN-NGNVLVAVDTAGRVLELTHML 142
I+P V+IT++ + +R R+ R TN++ T+ N G L+ V GR EL +L
Sbjct: 204 -IKPDVLITESTYGTHIHEKREERETRF-TNLIHTIINRGGRCLIPVFALGRAQELLLIL 261
Query: 143 EQLW 146
+ W
Sbjct: 262 DDYW 265
>gi|332019331|gb|EGI59837.1| Cleavage and polyadenylation specificity factor subunit 3
[Acromyrmex echinatior]
Length = 685
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K D +G WAY G +++ +I+Y DF+ +++RHL +
Sbjct: 147 FHEEK---DMFGI-KFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPN 202
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I P V+IT++ + +R R+ R + + + G L+ V GR EL +L+
Sbjct: 203 -IHPDVLITESTYGTHIHEKREDREGRFTNLVHEIVNRGGRCLIPVFALGRAQELLLILD 261
Query: 144 QLW 146
+ W
Sbjct: 262 EYW 264
>gi|307199387|gb|EFN80012.1| Cleavage and polyadenylation specificity factor subunit 3
[Harpegnathos saltator]
Length = 685
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K D +G WAY G +++ +I+Y DF+ +++RHL +
Sbjct: 146 FHEEK---DVFGI-KFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPN 201
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I P V+IT++ + +R R+ R + + + G L+ V GR EL +L+
Sbjct: 202 -IHPDVLITESTYGTHIHEKREDREGRFTNLVHEIVNRGGRCLIPVFALGRAQELLLILD 260
Query: 144 QLW 146
+ W
Sbjct: 261 EYW 263
>gi|383861262|ref|XP_003706105.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Megachile rotundata]
Length = 686
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K D +G WAY G +++ +I+Y DF+ +++RHL +
Sbjct: 147 FHEEK---DVFGI-KFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPN 202
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I P V+IT++ + +R R+ R + + + G L+ V GR EL +L+
Sbjct: 203 -IHPDVLITESTYGTHIHEKREDREGRFTNLVHEIVNRGGRCLIPVFALGRAQELLLILD 261
Query: 144 QLW 146
+ W
Sbjct: 262 EYW 264
>gi|380012076|ref|XP_003690115.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Apis florea]
Length = 686
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K D +G WAY G +++ +I+Y DF+ +++RHL +
Sbjct: 147 FHEEK---DVFGI-KFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPN 202
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I P V+IT++ + +R R+ R + + + G L+ V GR EL +L+
Sbjct: 203 -IHPDVLITESTYGTHIHEKREDREGRFTNLVHEIVNRGGRCLIPVFALGRAQELLLILD 261
Query: 144 QLW 146
+ W
Sbjct: 262 EYW 264
>gi|414881434|tpg|DAA58565.1| TPA: putative RNA-metabolising metallo-beta-lactamase [Zea mays]
Length = 400
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
K G+ +VY D+N+ +RHL +DR ++ V+IT++ A + + R+ +
Sbjct: 168 AKVGDAAMVYTGDYNMTPDRHLGAAQIDR-LKLDVLITESTYAKSIRDSKPAREREFLKA 226
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + + G VL+ GR EL +L+ W
Sbjct: 227 VHKCVSGGGKVLIPTFALGRAQELCMLLDDYW 258
>gi|322786053|gb|EFZ12664.1| hypothetical protein SINV_01905 [Solenopsis invicta]
Length = 686
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K D +G WAY G +++ +I+Y DF+ +++RHL +
Sbjct: 147 FHEEK---DVFGI-KFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPN 202
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I P V+IT++ + +R R+ R + + + G L+ V GR EL +L+
Sbjct: 203 -IHPDVLITESTYGTHIHEKREDREGRFTNLVHEIVNRGGRCLIPVFALGRAQELLLILD 261
Query: 144 QLW 146
+ W
Sbjct: 262 EYW 264
>gi|116200035|ref|XP_001225829.1| hypothetical protein CHGG_08173 [Chaetomium globosum CBS 148.51]
gi|88179452|gb|EAQ86920.1| hypothetical protein CHGG_08173 [Chaetomium globosum CBS 148.51]
Length = 854
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + + +R V+IT++ I R R++ LM +I L
Sbjct: 190 ILFTGDYSREQDRHLVSAEVPKGVRVDVLITESTYGIASHVPRLEREQALMKSITGVLNR 249
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 250 GGRVLMPVFALGRAQELLLILDEYW 274
>gi|414881433|tpg|DAA58564.1| TPA: putative RNA-metabolising metallo-beta-lactamase [Zea mays]
Length = 400
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 41 AYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ 100
AY G K G+ +VY D+N+ +RHL +DR ++ V+IT++ A
Sbjct: 154 AYYAGHVIGAAMIYAKVGDAAMVYTGDYNMTPDRHLGAAQIDR-LKLDVLITESTYAKSI 212
Query: 101 QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + R+ + + + + G VL+ GR EL +L+ W
Sbjct: 213 RDSKPAREREFLKAVHKCVSGGGKVLIPTFALGRAQELCMLLDDYW 258
>gi|429243009|ref|NP_594263.2| mRNA cleavage and polyadenylation specificity factor complex
endoribonuclease subunit Ysh1 [Schizosaccharomyces pombe
972h-]
gi|384872669|sp|O13794.2|YSH1_SCHPO RecName: Full=Endoribonuclease ysh1; AltName: Full=mRNA
3'-end-processing protein ysh1
gi|347834169|emb|CAB16227.2| mRNA cleavage and polyadenylation specificity factor complex
endoribonuclease subunit Ysh1 [Schizosaccharomyces
pombe]
Length = 757
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL+ + RP V+IT++ R ++ RL+ I T+RN
Sbjct: 181 ILFTGDYSREEDRHLHVAEVPP-KRPDVLITESTYGTASHQPRLEKEARLLNIIHSTIRN 239
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLWRN 148
G VL+ V GR EL +L++ W N
Sbjct: 240 GGRVLMPVFALGRAQELLLILDEYWNN 266
>gi|440638117|gb|ELR08036.1| hypothetical protein GMDG_02874 [Geomyces destructans 20631-21]
Length = 831
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++++ +RHL + ++ V+IT++ + R R++ LM +I L
Sbjct: 190 ILFTGDYSIEPDRHLISASVPANVKVDVLITESTYGVASHVPRLEREQALMKSITGILNR 249
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW-RNKD 150
G VL+ V GR EL +L++ W R+KD
Sbjct: 250 GGRVLMPVFALGRAQELLLILDEYWSRHKD 279
>gi|440298403|gb|ELP91039.1| Cleavage and polyadenylation specificity factor subunit, putative
[Entamoeba invadens IP1]
Length = 788
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE + E+ W + G ++ +I+Y DF+ + +RH++ +
Sbjct: 147 FHEMQ----EFNGMKIWCFNAGHILGAAMFCLEINGVKILYTGDFSGESDRHMHSAEVPP 202
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
F V+I ++ I Q R R+ R + I++ L+ G L+ V + GR E +LE
Sbjct: 203 F-EIDVMICESTYGIMDQEPRVDRENRFVKQIVEILKRGGKCLIPVFSLGRAQEFELILE 261
Query: 144 QLWRN 148
+ W++
Sbjct: 262 EYWQS 266
>gi|254565077|ref|XP_002489649.1| Putative endoribonuclease [Komagataella pastoris GS115]
gi|238029445|emb|CAY67368.1| Putative endoribonuclease [Komagataella pastoris GS115]
Length = 784
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
++++ DF+ +++RHL+ + +RP V+IT++ R ++++L T I TL
Sbjct: 178 KVLFTGDFSREEDRHLSVAEVPP-VRPDVLITESTFGTATHEPREEKEKKLTTMIHSTLA 236
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
N G VL+ V GR EL +L++ W
Sbjct: 237 NGGRVLMPVFALGRAQELLLILDEYW 262
>gi|326426580|gb|EGD72150.1| cleavage and polyadenylation specificity factor subunit 3
[Salpingoeca sp. ATCC 50818]
Length = 790
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
+VY DF+ +++RHL + P ++IT++ + Q R+TR+ R I +
Sbjct: 213 LVYTGDFSREEDRHLMAAEVPPN-SPDILITESTFGVRQHESRQTREHRFTKTIHDVVDR 271
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLWRNKD 150
G L+ V GR EL +L+ W+N D
Sbjct: 272 GGRCLIPVFALGRAQELLLILDDYWQNHD 300
>gi|328350068|emb|CCA36468.1| hypothetical protein PP7435_Chr1-0308 [Komagataella pastoris CBS
7435]
Length = 741
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
++++ DF+ +++RHL+ + +RP V+IT++ R ++++L T I TL
Sbjct: 125 KVLFTGDFSREEDRHLSVAEVPP-VRPDVLITESTFGTATHEPREEKEKKLTTMIHSTLA 183
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
N G VL+ V GR EL +L++ W
Sbjct: 184 NGGRVLMPVFALGRAQELLLILDEYW 209
>gi|331212217|ref|XP_003307378.1| hypothetical protein PGTG_00328 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309297781|gb|EFP74372.1| hypothetical protein PGTG_00328 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 950
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Query: 50 PIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR------------FIRPTVVITDTMSA 97
P+ + ++Y FN +E HL+ L + RP V++ T +
Sbjct: 219 PLHTVSSASSSTLIYAPIFNHVRESHLDSAALVQATGDGSMRIGLGMSRPMVMVVGTERS 278
Query: 98 IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + R++ RD L+ +I QTLR + VL+ D + R++EL +L+ W
Sbjct: 279 LIKGIRKKDRDRILLDSITQTLRASRTVLIPTDPSARLIELLLLLDSHW 327
>gi|242032211|ref|XP_002463500.1| hypothetical protein SORBIDRAFT_01g000850 [Sorghum bicolor]
gi|241917354|gb|EER90498.1| hypothetical protein SORBIDRAFT_01g000850 [Sorghum bicolor]
Length = 695
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V I+Y D++ +++RHL L +F P + I ++ +
Sbjct: 168 WCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRHLRAAELPQF-SPDICIIESTYGVQ 226
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
Q R R++R I T+ G VL+ GR EL +L++ W
Sbjct: 227 QHQPRIVREKRFTEVIHNTVSQGGRVLIPAFALGRAQELLLILDEYW 273
>gi|115479027|ref|NP_001063107.1| Os09g0397900 [Oryza sativa Japonica Group]
gi|50252615|dbj|BAD28786.1| putative FEG protein [Oryza sativa Japonica Group]
gi|113631340|dbj|BAF25021.1| Os09g0397900 [Oryza sativa Japonica Group]
gi|218202115|gb|EEC84542.1| hypothetical protein OsI_31281 [Oryza sativa Indica Group]
gi|222641522|gb|EEE69654.1| hypothetical protein OsJ_29268 [Oryza sativa Japonica Group]
Length = 559
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 41 AYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ 100
AY G K G+ IVY D+N+ +RHL +DR ++ ++IT++ A
Sbjct: 154 AYYAGHVLGAAMIYAKVGDAAIVYTGDYNMTPDRHLGAAQIDR-LKLDLLITESTYAKTV 212
Query: 101 QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + R+ + + + + G VL+ GR EL +L+ W
Sbjct: 213 RDSKHAREREFLKAVHKCVSGGGKVLIPAFALGRAQELCILLDDYW 258
>gi|226505292|ref|NP_001151522.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Zea mays]
gi|195647398|gb|ACG43167.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Zea mays]
gi|224034229|gb|ACN36190.1| unknown [Zea mays]
gi|413932397|gb|AFW66948.1| cleavage and polyadenylation specificity factor, subunit [Zea mays]
Length = 694
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V I+Y D++ +++RHL L +F P + I ++ +
Sbjct: 168 WCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRHLRAAELPQF-SPDICIIESTYGVQ 226
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
Q R R++R I T+ G VL+ GR EL +L++ W
Sbjct: 227 QHQPRIVREKRFTEVIHNTVSQGGRVLIPAFALGRAQELLLILDEYW 273
>gi|312372474|gb|EFR20427.1| hypothetical protein AND_20124 [Anopheles darlingi]
Length = 692
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
WAY G +++ ++Y DF+ +++RHL + +RP V+IT++ +
Sbjct: 162 WAYNAGHVLGAAMFMIEIAGIRVLYTGDFSRQEDRHLMAAEIPA-MRPDVLITESTYGTH 220
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW-RNKD 150
+R R+ R + + + + G L+ V GR EL +L++ W +N D
Sbjct: 221 IHEKREDRENRFTSLVQKIVTQGGRCLIPVFALGRAQELLLILDEYWSQNPD 272
>gi|414881435|tpg|DAA58566.1| TPA: putative RNA-metabolising metallo-beta-lactamase [Zea mays]
Length = 558
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
K G+ +VY D+N+ +RHL +DR ++ V+IT++ A + + R+ +
Sbjct: 168 AKVGDAAMVYTGDYNMTPDRHLGAAQIDR-LKLDVLITESTYAKSIRDSKPAREREFLKA 226
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + + G VL+ GR EL +L+ W
Sbjct: 227 VHKCVSGGGKVLIPTFALGRAQELCMLLDDYW 258
>gi|89267474|emb|CAJ83498.1| cleavage and polyadenylation specific factor 3 [Xenopus (Silurana)
tropicalis]
Length = 692
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 147 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 202
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
++P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 203 -VKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRALIPVFALGRAQELLLILD 261
Query: 144 QLWRN 148
+ W+N
Sbjct: 262 EYWQN 266
>gi|348531581|ref|XP_003453287.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Oreochromis niloticus]
Length = 690
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 147 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPS 202
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
++P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 203 -VKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILD 261
Query: 144 QLWRN 148
+ W+N
Sbjct: 262 EYWQN 266
>gi|367034742|ref|XP_003666653.1| hypothetical protein MYCTH_2311535 [Myceliophthora thermophila ATCC
42464]
gi|347013926|gb|AEO61408.1| hypothetical protein MYCTH_2311535 [Myceliophthora thermophila ATCC
42464]
Length = 879
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + + ++ V+IT++ I R R++ LM +I L
Sbjct: 190 ILFTGDYSREQDRHLVSAEVPKGVKIDVLITESTYGIASHVPRLEREQALMKSITSVLNR 249
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 250 GGRVLMPVFALGRAQELLLILDEYW 274
>gi|148702077|gb|EDL34024.1| cleavage and polyadenylation specificity factor 3, isoform CRA_a
[Mus musculus]
Length = 261
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 90 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 145
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 146 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 204
Query: 144 QLWRN 148
+ W+N
Sbjct: 205 EYWQN 209
>gi|55741994|ref|NP_001006770.1| cleavage and polyadenylation specificity factor 3 [Xenopus
(Silurana) tropicalis]
gi|49522504|gb|AAH75564.1| cleavage and polyadenylation specific factor 3, 73kDa [Xenopus
(Silurana) tropicalis]
Length = 692
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 147 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 202
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
++P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 203 -VKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRALIPVFALGRAQELLLILD 261
Query: 144 QLWRN 148
+ W+N
Sbjct: 262 EYWQN 266
>gi|308198072|ref|XP_001387057.2| predicted protein [Scheffersomyces stipitis CBS 6054]
gi|149389019|gb|EAZ63034.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 934
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCV---------LDRFIRPTVVITDTMSAIY 99
G W I K + ++Y +N K+ LNG L + +RPT IT T
Sbjct: 158 GTFWLITKRSDR-VIYAPAWNHSKDSFLNGASFLSSSSGNPLSQLLRPTAFITSTDMGSV 216
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQ 144
++RT E+ + + TL N G ++ +GR LEL H++++
Sbjct: 217 MSHKKRT--EKFLQLVDATLANGGAAVIPTSLSGRFLELFHLIDE 259
>gi|126030713|pdb|2I7T|A Chain A, Structure Of Human Cpsf-73
gi|126030714|pdb|2I7V|A Chain A, Structure Of Human Cpsf-73
Length = 459
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>gi|449016323|dbj|BAM79725.1| cleavage and polyadenylation specifity factor protein
[Cyanidioschyzon merolae strain 10D]
Length = 749
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%)
Query: 41 AYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ 100
AY G +V+ ++Y DF+ +++RHL + R I V+I ++ +
Sbjct: 153 AYNAGHVLGAAMFLVEVAGVSVLYTGDFSRQEDRHLMEAEIPRGIHIDVLICESTYGVQV 212
Query: 101 QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
RR R+ R + + ++ G L+ V GR EL +LE+ W
Sbjct: 213 HEPRRVREARFTQRVAEVVKRGGRCLLPVFALGRAQELLLILEEYW 258
>gi|147905468|ref|NP_001088278.1| cleavage and polyadenylation specific factor 3, 73kDa [Xenopus
laevis]
gi|54038587|gb|AAH84286.1| LOC495111 protein [Xenopus laevis]
Length = 692
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 147 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 202
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 203 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRSLIPVFALGRAQELLLILD 261
Query: 144 QLWRN 148
+ W+N
Sbjct: 262 EYWQN 266
>gi|226497180|ref|NP_001146407.1| uncharacterized protein LOC100279987 [Zea mays]
gi|219887045|gb|ACL53897.1| unknown [Zea mays]
gi|414873991|tpg|DAA52548.1| TPA: hypothetical protein ZEAMMB73_264007 [Zea mays]
Length = 697
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V I+Y D++ +++RHL L +F P + I ++ +
Sbjct: 168 WCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRHLRAAELPQF-SPDICIIESTYGVQ 226
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
Q R R++R I T+ G VL+ GR EL +L++ W
Sbjct: 227 QHQPRIIREKRFTEVIHNTVSQGGRVLIPAFALGRAQELLLILDEYW 273
>gi|67517547|ref|XP_658594.1| hypothetical protein AN0990.2 [Aspergillus nidulans FGSC A4]
gi|74598547|sp|Q5BEP0.1|YSH1_EMENI RecName: Full=Endoribonuclease ysh1; AltName: Full=mRNA
3'-end-processing protein ysh1
gi|40746402|gb|EAA65558.1| hypothetical protein AN0990.2 [Aspergillus nidulans FGSC A4]
gi|259488717|tpe|CBF88384.1| TPA: Endoribonuclease ysh1 (EC 3.1.27.-)(mRNA 3'-end-processing
protein ysh1) [Source:UniProtKB/Swiss-Prot;Acc:Q5BEP0]
[Aspergillus nidulans FGSC A4]
Length = 884
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + R ++ V+IT++ I R R+ LM +I L
Sbjct: 190 ILFTGDYSREEDRHLIPATVPRGVKIDVLITESTFGISSNPPRLEREAALMKSITGVLNR 249
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +LE+ W
Sbjct: 250 GGRVLMPVFALGRAQELLLILEEYW 274
>gi|387594701|gb|EIJ89725.1| hypothetical protein NEQG_00495 [Nematocida parisii ERTm3]
gi|387596451|gb|EIJ94072.1| hypothetical protein NEPG_00738 [Nematocida parisii ERTm1]
Length = 744
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G +WKI ++ E+E + N +KE HL+G +P ++ ++ I +Q RR RD
Sbjct: 151 GSVWKI-RKNEQEWLICDKVNHRKEAHLDGLDTSNISKPLGIVVNSTHVIKEQNTRRMRD 209
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDS 151
+ L+ I++ + N G V + + +L ++ L+ +KD+
Sbjct: 210 KELVDCIVKCINNKGKVFIPTGYS----QLLEIVMTLYNHKDT 248
>gi|156343760|ref|XP_001621104.1| hypothetical protein NEMVEDRAFT_v1g222359 [Nematostella vectensis]
gi|156206741|gb|EDO29004.1| predicted protein [Nematostella vectensis]
Length = 388
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 33 EYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVIT 92
E G W Y G +++ +I+Y DF+ +++RHL + I P V+I
Sbjct: 80 EVGGIKFWCYHAGHVLGACMFMLEIAGVKILYTGDFSRQEDRHLMAAEIPS-ISPDVLII 138
Query: 93 DTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
++ + +R R+ R + + G L+ V GR EL +L++ W+N
Sbjct: 139 ESTYGTHIHEKREEREARFTGTVHDIVNRGGRCLIPVFALGRAQELLLILDEYWQN 194
>gi|297739607|emb|CBI29789.3| unnamed protein product [Vitis vinifera]
Length = 314
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V ++Y D++ +++RHL + +F P + I ++ +
Sbjct: 178 WCYTAGHVLGAAMFMVDIAGVRVLYTGDYSSEEDRHLRAAEIPQFC-PDICIIESTYGVQ 236
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R R++R I T+ G VL+ GR EL +L++ W N
Sbjct: 237 LHQPRHVREKRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSN 285
>gi|116283804|gb|AAH30988.1| CPSF3 protein [Homo sapiens]
Length = 554
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>gi|71682600|gb|AAI00570.1| Cpsf3 protein [Mus musculus]
Length = 512
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>gi|344280152|ref|XP_003411849.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Loxodonta africana]
Length = 903
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 359 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 414
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 415 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 473
Query: 144 QLWRN 148
+ W+N
Sbjct: 474 EYWQN 478
>gi|326916480|ref|XP_003204535.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Meleagris gallopavo]
Length = 759
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 214 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 269
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 270 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 328
Query: 144 QLWRN 148
+ W+N
Sbjct: 329 EYWQN 333
>gi|149050992|gb|EDM03165.1| cleavage and polyadenylation specificity factor 3, isoform CRA_b
[Rattus norvegicus]
Length = 605
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>gi|291233360|ref|XP_002736621.1| PREDICTED: cleavage and polyadenylation specific factor 3,
73kDa-like [Saccoglossus kowalevskii]
Length = 715
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +++ +++Y DF+ +++RHL L +RP V+I ++ +
Sbjct: 159 WCYNAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAELPS-VRPDVLIIESTYGTH 217
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
+R R+ R + + G L+ V GR EL +L++ W N
Sbjct: 218 IHEKREEREARFTGTVHDIVNRGGRCLIPVFALGRAQELLLILDEYWAN 266
>gi|2394306|gb|AAB70268.1| 73 kDA subunit of cleavage and polyadenylation specificity factor
[Homo sapiens]
Length = 379
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 21 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 76
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 77 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 135
Query: 144 QLWRN 148
+ W+N
Sbjct: 136 EYWQN 140
>gi|449283675|gb|EMC90280.1| Cleavage and polyadenylation specificity factor subunit 3, partial
[Columba livia]
Length = 667
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 123 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 178
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 179 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 237
Query: 144 QLWRN 148
+ W+N
Sbjct: 238 EYWQN 242
>gi|395507218|ref|XP_003757924.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Sarcophilus harrisii]
Length = 684
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>gi|359321645|ref|XP_003639652.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Canis lupus familiaris]
Length = 717
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 173 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 228
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 229 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 287
Query: 144 QLWRN 148
+ W+N
Sbjct: 288 EYWQN 292
>gi|71795627|ref|NP_001025201.1| cleavage and polyadenylation specificity factor subunit 3 [Rattus
norvegicus]
gi|71121802|gb|AAH99817.1| Cleavage and polyadenylation specificity factor 3 [Rattus
norvegicus]
Length = 685
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGMKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>gi|429965431|gb|ELA47428.1| hypothetical protein VCUG_01079 [Vavraia culicis 'floridensis']
Length = 642
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 71 KKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVD 130
KK + VL R RP V+IT+ + R+T+ L+T ++Q + NG VL+ V
Sbjct: 337 KKMKKQEAMVLRRLKRPDVMITECTYGSVDRECRKTKIRELITTVVQCIERNGKVLIPVF 396
Query: 131 TAGRVLELTHMLEQLWRNKD 150
GR E+ ML ++N +
Sbjct: 397 AIGRAQEMYTMLSAFFKNAN 416
>gi|363732494|ref|XP_419942.3| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Gallus gallus]
Length = 672
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 127 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 182
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 183 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 241
Query: 144 QLWRN 148
+ W+N
Sbjct: 242 EYWQN 246
>gi|355680849|gb|AER96661.1| cleavage and polyadenylation specific factor 3, 73kDa [Mustela
putorius furo]
Length = 600
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 89 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 144
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 145 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 203
Query: 144 QLWRN 148
+ W+N
Sbjct: 204 EYWQN 208
>gi|297739590|emb|CBI29772.3| unnamed protein product [Vitis vinifera]
Length = 680
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V ++Y D++ +++RHL + +F P + I ++ +
Sbjct: 164 WCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEIPQF-SPDICIIESTYGVQ 222
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R R++R I T+ G VL+ GR EL +L++ W N
Sbjct: 223 LHQPRHVREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSN 271
>gi|126303222|ref|XP_001371997.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Monodelphis domestica]
Length = 684
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>gi|449498153|ref|XP_002196255.2| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3 [Taeniopygia guttata]
Length = 746
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 202 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 257
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 258 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 316
Query: 144 QLWRN 148
+ W+N
Sbjct: 317 EYWQN 321
>gi|449532563|ref|XP_004173250.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like, partial [Cucumis sativus]
Length = 200
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V +++Y D++ +++RHL + +F P V I ++ +
Sbjct: 76 WCYTAGHVLGAAMFMVDIAGVQVLYTGDYSREEDRHLRAAEMPQF-SPDVCIIESTYGVQ 134
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R R++R + T+ G VL+ GR EL +L++ W N
Sbjct: 135 LHQPRHIREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWAN 183
>gi|431911821|gb|ELK13965.1| Cleavage and polyadenylation specificity factor subunit 3, partial
[Pteropus alecto]
Length = 667
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 123 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 178
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 179 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 237
Query: 144 QLWRN 148
+ W+N
Sbjct: 238 EYWQN 242
>gi|149050991|gb|EDM03164.1| cleavage and polyadenylation specificity factor 3, isoform CRA_a
[Rattus norvegicus]
Length = 685
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>gi|27805863|ref|NP_776709.1| cleavage and polyadenylation specificity factor subunit 3 [Bos
taurus]
gi|426223116|ref|XP_004005724.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Ovis aries]
gi|18202362|sp|P79101.1|CPSF3_BOVIN RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit; Short=CPSF 73 kDa
subunit; AltName: Full=mRNA 3'-end-processing
endonuclease CPSF-73
gi|1707412|emb|CAA65151.1| Cleavage and Polyadenylation Specifity Factor protein [Bos taurus]
gi|75773721|gb|AAI04554.1| Cleavage and polyadenylation specific factor 3, 73kDa [Bos taurus]
gi|296482248|tpg|DAA24363.1| TPA: cleavage and polyadenylation specificity factor subunit 3 [Bos
taurus]
gi|440897562|gb|ELR49218.1| Cleavage and polyadenylation specificity factor subunit 3 [Bos
grunniens mutus]
Length = 684
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>gi|194220982|ref|XP_001502516.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Equus caballus]
gi|301775721|ref|XP_002923277.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Ailuropoda melanoleuca]
Length = 684
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>gi|297739612|emb|CBI29794.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V ++Y D++ +++RHL + +F P + I ++ +
Sbjct: 163 WCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEIPQFC-PDICIIESTYGVQ 221
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R R++R I T+ G VL+ GR EL +L++ W N
Sbjct: 222 LHQPRHVREKRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSN 270
>gi|281351872|gb|EFB27456.1| hypothetical protein PANDA_012399 [Ailuropoda melanoleuca]
Length = 648
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 104 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 159
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 160 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 218
Query: 144 QLWRN 148
+ W+N
Sbjct: 219 EYWQN 223
>gi|31980904|ref|NP_061283.2| cleavage and polyadenylation specificity factor subunit 3 [Mus
musculus]
gi|341940395|sp|Q9QXK7.2|CPSF3_MOUSE RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit; Short=CPSF 73 kDa
subunit; Short=mRNA 3'-end-processing endonuclease
CPSF-73
gi|23271024|gb|AAH23297.1| Cleavage and polyadenylation specificity factor 3 [Mus musculus]
Length = 684
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>gi|148702078|gb|EDL34025.1| cleavage and polyadenylation specificity factor 3, isoform CRA_b
[Mus musculus]
Length = 701
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 157 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 212
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 213 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 271
Query: 144 QLWRN 148
+ W+N
Sbjct: 272 EYWQN 276
>gi|74221128|dbj|BAE42066.1| unnamed protein product [Mus musculus]
Length = 684
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>gi|417412420|gb|JAA52597.1| Putative cleavage and polyadenylation specificity factor cpsf
subunit, partial [Desmodus rotundus]
Length = 714
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 170 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 225
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 226 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 284
Query: 144 QLWRN 148
+ W+N
Sbjct: 285 EYWQN 289
>gi|354504216|ref|XP_003514173.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Cricetulus griseus]
Length = 684
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>gi|171689890|ref|XP_001909884.1| hypothetical protein [Podospora anserina S mat+]
gi|170944907|emb|CAP71018.1| unnamed protein product [Podospora anserina S mat+]
Length = 835
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I + D++ +++RHL + R ++ V+IT++ I R R++ LM +I L
Sbjct: 191 IFFTGDYSREQDRHLVSAQVPRGVKIDVLITESTYGIASHVPRLEREQALMKSITGILNR 250
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYW 275
>gi|7706427|ref|NP_057291.1| cleavage and polyadenylation specificity factor subunit 3 [Homo
sapiens]
gi|18203503|sp|Q9UKF6.1|CPSF3_HUMAN RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit; Short=CPSF 73 kDa
subunit; AltName: Full=mRNA 3'-end-processing
endonuclease CPSF-73
gi|6002955|gb|AAF00224.1|AF171877_1 cleavage and polyadenylation specificity factor 73 kDa subunit
[Homo sapiens]
gi|18044212|gb|AAH20211.1| Cleavage and polyadenylation specific factor 3, 73kDa [Homo
sapiens]
gi|62822309|gb|AAY14858.1| unknown [Homo sapiens]
gi|119621394|gb|EAX00989.1| cleavage and polyadenylation specific factor 3, 73kDa, isoform
CRA_a [Homo sapiens]
Length = 684
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>gi|335285899|ref|XP_003354974.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Sus scrofa]
Length = 684
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>gi|402890043|ref|XP_003908303.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Papio anubis]
Length = 684
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>gi|350539083|ref|NP_001233296.1| cleavage and polyadenylation specificity factor subunit 3 [Pan
troglodytes]
gi|397513374|ref|XP_003826991.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Pan paniscus]
gi|426334660|ref|XP_004028859.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Gorilla gorilla gorilla]
gi|343961085|dbj|BAK62132.1| cleavage and polyadenylation specificity factor 73 kDa subunit [Pan
troglodytes]
gi|343961781|dbj|BAK62478.1| cleavage and polyadenylation specificity factor 73 kDa subunit [Pan
troglodytes]
gi|410254182|gb|JAA15058.1| cleavage and polyadenylation specific factor 3, 73kDa [Pan
troglodytes]
gi|410291448|gb|JAA24324.1| cleavage and polyadenylation specific factor 3, 73kDa [Pan
troglodytes]
gi|410339611|gb|JAA38752.1| cleavage and polyadenylation specific factor 3, 73kDa [Pan
troglodytes]
Length = 684
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>gi|351704796|gb|EHB07715.1| Cleavage and polyadenylation specificity factor subunit 3
[Heterocephalus glaber]
Length = 692
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>gi|300676780|gb|ADK26656.1| cleavage and polyadenylation specific factor 3, 73kDa [Zonotrichia
albicollis]
Length = 721
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 177 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 232
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 233 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 291
Query: 144 QLWRN 148
+ W+N
Sbjct: 292 EYWQN 296
>gi|296224527|ref|XP_002758090.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Callithrix jacchus]
Length = 684
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>gi|332247248|ref|XP_003272765.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Nomascus leucogenys]
gi|67969340|dbj|BAE01022.1| unnamed protein product [Macaca fascicularis]
gi|355751093|gb|EHH55348.1| hypothetical protein EGM_04543 [Macaca fascicularis]
gi|380813676|gb|AFE78712.1| cleavage and polyadenylation specificity factor subunit 3 [Macaca
mulatta]
gi|383419123|gb|AFH32775.1| cleavage and polyadenylation specificity factor subunit 3 [Macaca
mulatta]
gi|384940728|gb|AFI33969.1| cleavage and polyadenylation specificity factor subunit 3 [Macaca
mulatta]
Length = 684
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>gi|62898706|dbj|BAD97207.1| cleavage and polyadenylation specific factor 3, 73kDa variant [Homo
sapiens]
Length = 684
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>gi|403270697|ref|XP_003927303.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Saimiri boliviensis boliviensis]
Length = 658
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 144 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 199
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 200 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 258
Query: 144 QLWRN 148
+ W+N
Sbjct: 259 EYWQN 263
>gi|198421242|ref|XP_002128016.1| PREDICTED: similar to Cleavage and polyadenylation specificity
factor subunit 3 (Cleavage and polyadenylation
specificity factor 73 kDa subunit) (CPSF 73 kDa subunit)
(mRNA 3-end-processing endonuclease CPSF-73) [Ciona
intestinalis]
Length = 690
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K+ G W Y G +++ ++Y D++ +++RHL +
Sbjct: 145 FHEEKM----VGGIKFWCYHAGHVLGAAMFMIQIAGVRVLYTGDYSREEDRHLMAAEIPA 200
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
+RP V+IT+ + R R+ R + + G L+ V GR EL +L+
Sbjct: 201 -VRPDVLITEATYGTHIHEPREEREARFTNTVQDIVNRGGRCLIPVFALGRAQELLLILD 259
Query: 144 QLWRN 148
W N
Sbjct: 260 DYWAN 264
>gi|348558392|ref|XP_003465002.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Cavia porcellus]
Length = 684
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>gi|291412514|ref|XP_002722528.1| PREDICTED: cleavage and polyadenylation specific factor 3, 73kDa
[Oryctolagus cuniculus]
Length = 684
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>gi|395828536|ref|XP_003787428.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3 [Otolemur garnettii]
Length = 634
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 139 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 194
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 195 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 253
Query: 144 QLWRN 148
+ W+N
Sbjct: 254 EYWQN 258
>gi|355565449|gb|EHH21878.1| hypothetical protein EGK_05038 [Macaca mulatta]
Length = 650
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 137 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 192
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 193 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 251
Query: 144 QLWRN 148
+ W+N
Sbjct: 252 EYWQN 256
>gi|74178650|dbj|BAE33998.1| unnamed protein product [Mus musculus]
Length = 684
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>gi|410955844|ref|XP_003984560.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Felis catus]
Length = 686
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>gi|294945374|ref|XP_002784648.1| cleavage and polyadenylation specificity factor, putative
[Perkinsus marinus ATCC 50983]
gi|239897833|gb|EER16444.1| cleavage and polyadenylation specificity factor, putative
[Perkinsus marinus ATCC 50983]
Length = 1115
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 36/125 (28%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVL--DRFIRPTVVITDTMSAIYQQA- 102
+ G W+I G + +VY VD+ + +RHLNG L P+V+IT+TM + A
Sbjct: 222 MLGGAYWRI-DVGSQSMVYAVDYQMAGDRHLNGMELPPPEQAPPSVLITNTMPPAVEGAV 280
Query: 103 --------------RRRTRD----------------ERLMTNILQTLRNNGNVLVAVD-- 130
RRT D E L+ +L++LR +G VL+ VD
Sbjct: 281 TCAGQGATSNVATESRRTYDAGITASRSNRRYAQAEEALLGMVLRSLRKDGTVLLPVDCC 340
Query: 131 TAGRV 135
+ GRV
Sbjct: 341 STGRV 345
>gi|119621395|gb|EAX00990.1| cleavage and polyadenylation specific factor 3, 73kDa, isoform
CRA_b [Homo sapiens]
Length = 647
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 103 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 158
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 159 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 217
Query: 144 QLWRN 148
+ W+N
Sbjct: 218 EYWQN 222
>gi|67969643|dbj|BAE01170.1| unnamed protein product [Macaca fascicularis]
Length = 684
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>gi|359486187|ref|XP_002271646.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Vitis vinifera]
Length = 693
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V ++Y D++ +++RHL + +F P + I ++ +
Sbjct: 163 WCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEIPQFC-PDICIIESTYGVQ 221
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R R++R I T+ G VL+ GR EL +L++ W N
Sbjct: 222 LHQPRHVREKRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSN 270
>gi|168007963|ref|XP_001756677.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692273|gb|EDQ78631.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 682
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V ++Y D++ +++RHL + F P V I ++ +
Sbjct: 158 WCYTAGHVLGAAMFMVDIAGMRVLYTGDYSCEEDRHLRAAEMPHF-SPDVCIIESTYGVQ 216
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
R R+ R + QT+ G VL+ GR EL +L++ W
Sbjct: 217 IHQPRIMRERRFTDTVAQTVSQGGKVLIPAFALGRAQELLLILDEYW 263
>gi|242778797|ref|XP_002479311.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Talaromyces stipitatus ATCC 10500]
gi|218722930|gb|EED22348.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Talaromyces stipitatus ATCC 10500]
Length = 861
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + R I+ V+IT++ I R R+ LM +I L
Sbjct: 191 ILFTGDYSREEDRHLIPAEVPRGIKIDVLITESTFGISSNPPRLEREAALMKSITGILNR 250
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +LE+ W
Sbjct: 251 GGRVLMPVFALGRAQELLLILEEYW 275
>gi|432100623|gb|ELK29151.1| Cleavage and polyadenylation specificity factor subunit 3 [Myotis
davidii]
Length = 684
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>gi|344257704|gb|EGW13808.1| Cleavage and polyadenylation specificity factor subunit 3
[Cricetulus griseus]
Length = 647
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 103 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 158
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 159 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 217
Query: 144 QLWRN 148
+ W+N
Sbjct: 218 EYWQN 222
>gi|255542245|ref|XP_002512186.1| Cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Ricinus communis]
gi|223548730|gb|EEF50220.1| Cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Ricinus communis]
Length = 361
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V ++Y D++ +++RHL + +F P + I ++ +
Sbjct: 164 WCYTAGHVLGAAMFMVDIAGVRLLYTGDYSREEDRHLRAAEMPQF-SPDICIIESTYGVQ 222
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R R++R I T+ G VL+ GR EL +L++ W N
Sbjct: 223 LHQPRHIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSN 271
>gi|197102904|ref|NP_001127045.1| cleavage and polyadenylation specificity factor subunit 3 [Pongo
abelii]
gi|55733623|emb|CAH93488.1| hypothetical protein [Pongo abelii]
Length = 647
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 103 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 158
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 159 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 217
Query: 144 QLWRN 148
+ W+N
Sbjct: 218 EYWQN 222
>gi|307177772|gb|EFN66769.1| Cleavage and polyadenylation specificity factor subunit 3 [Camponotus
floridanus]
Length = 1750
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K D +G WAY G +++ +I+Y DF+ +++RHL +
Sbjct: 1211 FHEEK---DVFGI-KFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPN 1266
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I P V+IT++ + +R R+ R + + + G L+ V GR EL +L+
Sbjct: 1267 -IHPDVLITESTYGTHIHEKREDREGRFTNLVHEIVNRGGRCLIPVFALGRAQELLLILD 1325
Query: 144 QLW 146
+ W
Sbjct: 1326 EYW 1328
>gi|327261273|ref|XP_003215455.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Anolis carolinensis]
Length = 651
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 106 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 161
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 162 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 220
Query: 144 QLWRN 148
+ W+N
Sbjct: 221 EYWQN 225
>gi|297737628|emb|CBI26829.3| unnamed protein product [Vitis vinifera]
Length = 686
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
K G+ +VY D+N+ +RHL +DR ++ ++IT++ A + + R+ +
Sbjct: 220 AKVGDAAMVYTGDYNMTPDRHLGAAQIDR-LQLDLLITESTYATTVRDSKYAREREFLKA 278
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + + + G VL+ GR EL +L+ W
Sbjct: 279 VHKCVADGGKVLIPTFALGRAQELCILLDNYW 310
>gi|194743214|ref|XP_001954095.1| GF18101 [Drosophila ananassae]
gi|190627132|gb|EDV42656.1| GF18101 [Drosophila ananassae]
Length = 684
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I+Y DF+ +++RHL + ++P V+IT++ + +R R+ R + + +T++
Sbjct: 179 KILYTGDFSRQEDRHLMAAEVPP-MKPDVLITESTYGTHIHEKREDRENRFTSLVQKTVQ 237
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW-RNKD 150
G L+ V GR EL +L++ W +N D
Sbjct: 238 QGGRCLIPVFALGRAQELLLILDEFWSQNPD 268
>gi|294883712|ref|XP_002771037.1| cleavage and polyadenylation specificity factor, putative
[Perkinsus marinus ATCC 50983]
gi|239874243|gb|EER02853.1| cleavage and polyadenylation specificity factor, putative
[Perkinsus marinus ATCC 50983]
Length = 1050
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 36/125 (28%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVL--DRFIRPTVVITDTMSAIYQQA- 102
+ G W+I G + +VY VD+ + +RHLNG L P+V+IT+TM + A
Sbjct: 177 MLGGAYWRI-DVGSQSMVYAVDYQMAGDRHLNGMELPPPEQAPPSVLITNTMPPAVEGAV 235
Query: 103 --------------RRRTRD----------------ERLMTNILQTLRNNGNVLVAVD-- 130
RRT D E L+ +L++LR +G VL+ VD
Sbjct: 236 TCAGQGATSNVATESRRTYDAGITASRSNRRYAQAEEALLGMVLRSLRKDGTVLLPVDCC 295
Query: 131 TAGRV 135
+ GRV
Sbjct: 296 STGRV 300
>gi|302927041|ref|XP_003054415.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735356|gb|EEU48702.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 827
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%)
Query: 54 IVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMT 113
+++ G I + D++ +++RHL + + ++ V+IT++ I R R++ LM
Sbjct: 182 LIEIGGLNIFFTGDYSREQDRHLVSAEVPKGVKIDVLITESTYGIASHVPRLEREQALMK 241
Query: 114 NILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+I L G VL+ V GR EL +L++ W
Sbjct: 242 SITSILNRGGRVLMPVFALGRAQELLLILDEYW 274
>gi|149641381|ref|XP_001505542.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like, partial [Ornithorhynchus anatinus]
Length = 595
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 51 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 106
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 107 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 165
Query: 144 QLWRN 148
+ W+N
Sbjct: 166 EYWQN 170
>gi|47230093|emb|CAG10507.1| unnamed protein product [Tetraodon nigroviridis]
Length = 730
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE + E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 137 FHEVR----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPS 192
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
++P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 193 -VKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILD 251
Query: 144 QLWRN 148
+ W+N
Sbjct: 252 EYWQN 256
>gi|389634325|ref|XP_003714815.1| endoribonuclease YSH1 [Magnaporthe oryzae 70-15]
gi|351647148|gb|EHA55008.1| endoribonuclease YSH1 [Magnaporthe oryzae 70-15]
gi|440467574|gb|ELQ36790.1| endoribonuclease YSH1 [Magnaporthe oryzae Y34]
gi|440483131|gb|ELQ63565.1| endoribonuclease YSH1 [Magnaporthe oryzae P131]
Length = 829
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I + D++ +++RHL + R ++ V+IT++ I R R++ LM +I L
Sbjct: 190 IFFTGDYSREQDRHLVSAEVPRGVKIDVLITESTYGIASHVPRVEREQALMKSITGILNR 249
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 250 GGRVLMPVFALGRAQELLLILDEYW 274
>gi|359486185|ref|XP_003633408.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Vitis vinifera]
Length = 694
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V ++Y D++ +++RHL + +F P + I ++ +
Sbjct: 164 WCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEIPQF-SPDICIIESTYGVQ 222
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R R++R I T+ G VL+ GR EL +L++ W N
Sbjct: 223 LHQPRHVREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSN 271
>gi|147787280|emb|CAN71414.1| hypothetical protein VITISV_029216 [Vitis vinifera]
Length = 687
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V ++Y D++ +++RHL + +F P + I ++ +
Sbjct: 157 WCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEIPQF-SPDICIIESTYGVQ 215
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R R++R I T+ G VL+ GR EL +L++ W N
Sbjct: 216 LHQPRHVREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSN 264
>gi|405963469|gb|EKC29039.1| Cleavage and polyadenylation specificity factor subunit 3
[Crassostrea gigas]
Length = 686
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +++ ++Y DF+ +++RHL + R I P VVI ++ +
Sbjct: 157 WCYTAGHVLGAAMFMIEIAGVRVLYTGDFSRQEDRHLMAAEIPR-IHPDVVIIESTYGTH 215
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
+R R+ R + + G L+ V GR EL +L++ W N
Sbjct: 216 IHEKREDREARFTGLVHDIVSRGGRCLIPVFALGRAQELLLILDEYWSN 264
>gi|348689662|gb|EGZ29476.1| hypothetical protein PHYSODRAFT_552782 [Phytophthora sojae]
Length = 513
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 112 MTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
M IL+T+RN GNVL+ D++GRVLEL +L+Q W
Sbjct: 1 MMEILKTVRNGGNVLIPTDSSGRVLELMRVLDQYW 35
>gi|449435476|ref|XP_004135521.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Cucumis sativus]
Length = 392
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V ++Y D++ +++RHL + +F P V I ++ +
Sbjct: 164 WCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQF-SPDVCIIESTYGVQ 222
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R R++R + T+ G VL+ GR EL +L++ W N
Sbjct: 223 LHQPRHIREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWAN 271
>gi|212533753|ref|XP_002147033.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Talaromyces marneffei ATCC 18224]
gi|210072397|gb|EEA26486.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Talaromyces marneffei ATCC 18224]
Length = 866
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + R I+ V+IT++ I R R+ LM +I L
Sbjct: 191 ILFTGDYSREEDRHLIPAEVPRGIKIDVLITESTFGISSNPPRLEREAALMKSITGILNR 250
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +LE+ W
Sbjct: 251 GGRVLMPVFALGRAQELLLILEEYW 275
>gi|380494427|emb|CCF33158.1| endoribonuclease YSH1 [Colletotrichum higginsianum]
Length = 846
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I + D++ +++RHL + + ++ V+IT++ I R R++ LM +I L
Sbjct: 189 KIFFTGDYSREQDRHLVSAEVPKGVKIDVLITESTYGIASHVPRLEREQALMKSITSILN 248
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 249 RGGRVLMPVFALGRAQELLLILDEYW 274
>gi|310796189|gb|EFQ31650.1| metallo-beta-lactamase superfamily protein [Glomerella graminicola
M1.001]
Length = 855
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I + D++ +++RHL + + ++ V+IT++ I R R++ LM +I L
Sbjct: 189 KIFFTGDYSREQDRHLVSAEVPKGVKIDVLITESTYGIASHVPRLEREQALMKSITSILN 248
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 249 RGGRVLMPVFALGRAQELLLILDEYW 274
>gi|301092283|ref|XP_002997000.1| cleavage and polyadenylation specificity factor subunit, putative
[Phytophthora infestans T30-4]
gi|262112189|gb|EEY70241.1| cleavage and polyadenylation specificity factor subunit, putative
[Phytophthora infestans T30-4]
Length = 513
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 112 MTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
M IL+T+RN GNVL+ D++GRVLEL +L+Q W
Sbjct: 1 MMEILKTVRNGGNVLIPTDSSGRVLELMRVLDQYW 35
>gi|303391170|ref|XP_003073815.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon intestinalis ATCC 50506]
gi|303302963|gb|ADM12455.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon intestinalis ATCC 50506]
Length = 496
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
V G++ +VY D++ ++HL + + IRP ++IT++ + RR ++ +
Sbjct: 161 VSVGDQSVVYTGDYSTTPDKHLGPASI-KCIRPDLLITESTYGSITRDCRRVKEREFLKA 219
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + G VL+ + GR EL +L+ W
Sbjct: 220 VSDCIARGGRVLIPIFALGRAQELCLLLDGYW 251
>gi|242053629|ref|XP_002455960.1| hypothetical protein SORBIDRAFT_03g028040 [Sorghum bicolor]
gi|241927935|gb|EES01080.1| hypothetical protein SORBIDRAFT_03g028040 [Sorghum bicolor]
Length = 558
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 1/110 (0%)
Query: 41 AYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ 100
AY G K G+ +VY D+N+ +RHL +D ++ ++IT++ A
Sbjct: 154 AYYAGHVIGAAMIYAKVGDAAMVYTGDYNMTPDRHLGAAQIDH-LKLDLLITESTYAKTI 212
Query: 101 QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD 150
+ + R+ + + + + G VL+ GR EL +L+ W D
Sbjct: 213 RDSKHAREREFLKAVHKCVSGGGKVLIPTFALGRAQELCMLLDDYWERMD 262
>gi|30677952|ref|NP_178282.2| cleavage and polyadenylation specificity factor subunit 3-II
[Arabidopsis thaliana]
gi|332278175|sp|Q8GUU3.2|CPS3B_ARATH RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3-II; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit II; Short=AtCPSF73-II;
Short=CPSF 73 kDa subunit II; AltName: Full=Protein
EMBRYO SAC DEVELOPMENT ARREST 26
gi|62320470|dbj|BAD94982.1| putative cleavage and polyadenylation specifity factor [Arabidopsis
thaliana]
gi|330250395|gb|AEC05489.1| cleavage and polyadenylation specificity factor subunit 3-II
[Arabidopsis thaliana]
Length = 613
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 41 AYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ 100
AY G + K G+ IVY D+N+ +RHL +DR ++ ++I+++ A
Sbjct: 151 AYYAGHVLGAVMVYAKMGDAAIVYTGDYNMTTDRHLGAAKIDR-LQLDLLISESTYATTI 209
Query: 101 QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + R+ + + + + G L+ GR EL +L+ W
Sbjct: 210 RGSKYPREREFLQAVHKCVAGGGKALIPSFALGRAQELCMLLDDYW 255
>gi|444731702|gb|ELW72051.1| Cleavage and polyadenylation specificity factor subunit 3 [Tupaia
chinensis]
Length = 587
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 43 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 98
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 99 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 157
Query: 144 QLWRN 148
+ W+N
Sbjct: 158 EYWQN 162
>gi|442570104|sp|Q4IPN9.2|YSH1_GIBZE RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
Length = 833
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I + D++ +++RHL + + ++ V+IT++ I R R++ LM +I L
Sbjct: 190 IFFTGDYSREQDRHLVSAEVPKGVKIDVLITESTYGIASHVPRLEREQALMKSITSILNR 249
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 250 GGRVLMPVFALGRAQELLLILDEYW 274
>gi|410898094|ref|XP_003962533.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Takifugu rubripes]
Length = 691
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE + E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 147 FHEVR----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPS 202
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
++P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 203 -VKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILD 261
Query: 144 QLWRN 148
+ W+N
Sbjct: 262 EYWQN 266
>gi|342879865|gb|EGU81098.1| hypothetical protein FOXB_08372 [Fusarium oxysporum Fo5176]
Length = 858
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I + D++ +++RHL + + ++ V+IT++ I R R++ LM +I L
Sbjct: 216 IFFTGDYSREQDRHLVSAEVPKGVKIDVLITESTYGIASHVPRLEREQALMKSITSILNR 275
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 276 GGRVLMPVFALGRAQELLLILDEYW 300
>gi|221055463|ref|XP_002258870.1| RNA-metabolising metallo-beta-lactamase [Plasmodium knowlesi strain
H]
gi|193808940|emb|CAQ39643.1| RNA-metabolising metallo-beta-lactamase,putative [Plasmodium
knowlesi strain H]
Length = 914
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 33 EYGNHS-SWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVI 91
E GN S + Y + I+KI + ++Y D+N ++HL + + P + I
Sbjct: 220 EMGNMSITPYYAGHVLGACIYKI-EVNNFSVIYTGDYNTVPDKHLGSTKIPS-LNPEIFI 277
Query: 92 TDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
+++ A Y + R+ + L + + + G VL+ V GR EL+ +L+ WR
Sbjct: 278 SESTYATYVRPTRKASELDLCNLVHECVHKGGKVLIPVFAIGRAQELSILLDSYWR 333
>gi|408390480|gb|EKJ69876.1| hypothetical protein FPSE_09963 [Fusarium pseudograminearum CS3096]
Length = 833
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I + D++ +++RHL + + ++ V+IT++ I R R++ LM +I L
Sbjct: 190 IFFTGDYSREQDRHLVSAEVPKGVKIDVLITESTYGIASHVPRLEREQALMKSITSILNR 249
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 250 GGRVLMPVFALGRAQELLLILDEYW 274
>gi|341038970|gb|EGS23962.1| hypothetical protein CTHT_0006720 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 894
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + + ++ V+IT++ I R R++ LM +I L
Sbjct: 189 ILFTGDYSREQDRHLVSAQVPKGVKIDVLITESTYGIATHVPRLEREQALMKSITGILNR 248
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 249 GGRVLMPVFALGRAQELLLILDEYW 273
>gi|359472593|ref|XP_002281277.2| PREDICTED: uncharacterized protein LOC100261060 [Vitis vinifera]
Length = 2299
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
K G+ +VY D+N+ +RHL +DR ++ ++IT++ A + + R+ +
Sbjct: 1414 AKVGDAAMVYTGDYNMTPDRHLGAAQIDR-LQLDLLITESTYATTVRDSKYAREREFLKA 1472
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + + + G VL+ GR EL +L+ W
Sbjct: 1473 VHKCVADGGKVLIPTFALGRAQELCILLDNYW 1504
>gi|449518964|ref|XP_004166505.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3-II-like, partial [Cucumis
sativus]
Length = 472
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
K G+ +VY D+N+ +RHL +DR ++ ++IT++ A + + R+ +
Sbjct: 9 AKVGDAAMVYTGDYNMTPDRHLGAAQIDR-MQLDLLITESTYATTIRDSKYAREREFLKA 67
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ L + G VL+ GR EL +L+ W
Sbjct: 68 VHNCLASGGKVLIPTFALGRAQELCVLLDDYW 99
>gi|260815130|ref|XP_002602327.1| hypothetical protein BRAFLDRAFT_282200 [Branchiostoma floridae]
gi|229287635|gb|EEN58339.1| hypothetical protein BRAFLDRAFT_282200 [Branchiostoma floridae]
Length = 687
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +++ +I+Y DF+ +++RHL + I P V+I + +
Sbjct: 159 WCYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEVPA-IHPDVLIIEATYGTH 217
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
+R R+ R + + + G L+ V GR EL +L++ W N
Sbjct: 218 IHEKREEREARFTSTVHDIVNRGGRCLIPVFALGRAQELLLILDEYWSN 266
>gi|428671580|gb|EKX72498.1| cleavage and polyadenylation specificity factor, putative [Babesia
equi]
Length = 656
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
++Y DFN ++HL + R ++ T + + +Q R+ T E L T + TL
Sbjct: 244 VLYTGDFNTVPDKHLGPAKVPRLCPDVLICESTYATVVRQPRKATEME-LCTVVHDTLLK 302
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L+ W
Sbjct: 303 GGKVLIPVFAVGRAQELAIILDSYW 327
>gi|427779771|gb|JAA55337.1| Putative mrna cleavage and polyadenylation factor ii complex brr5
cpsf subunit [Rhipicephalus pulchellus]
Length = 621
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 42 YGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQ 101
Y + +++I + G + +VY D+N+ +RHL LD+ RP ++IT++ A +
Sbjct: 154 YAGHVLGAAMFRI-RVGSQSVVYTGDYNMTPDRHLGAAWLDK-CRPDLLITESTYATTIR 211
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAV 129
+R R+ +T + + G VL+ V
Sbjct: 212 DSKRCRERDFLTKVHDCIDKGGKVLIPV 239
>gi|401827835|ref|XP_003888210.1| putative RNA-processing beta-lactamase-fold exonuclease
[Encephalitozoon hellem ATCC 50504]
gi|392999410|gb|AFM99229.1| putative RNA-processing beta-lactamase-fold exonuclease
[Encephalitozoon hellem ATCC 50504]
Length = 496
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 42 YGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQ 101
Y + ++ +V G++ +VY D++ ++HL + + +RP ++IT++ +
Sbjct: 149 YAGHVLGAAMFHVVV-GDQSVVYTGDYSTTPDKHLGPASI-KCVRPDLLITESTYGSITR 206
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
RR ++ + I + G VL+ + GR EL +L+ W
Sbjct: 207 DCRRVKEREFLKAISDCIARGGRVLIPIFALGRAQELCLLLDGYW 251
>gi|145478255|ref|XP_001425150.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124392218|emb|CAK57752.1| unnamed protein product [Paramecium tetraurelia]
Length = 690
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
++Y D++ +KERHL L + V+I + Q R R+E + I+ TL
Sbjct: 173 VLYTGDYSTEKERHLRPAQLP-LEKIHVLIVEATYGDTQHETRTKREENFLKEIVSTLNG 231
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
GNVL+ V GR EL +L++ W
Sbjct: 232 GGNVLLPVFATGRCHELLIILDEYW 256
>gi|302412663|ref|XP_003004164.1| endoribonuclease YSH1 [Verticillium albo-atrum VaMs.102]
gi|261356740|gb|EEY19168.1| endoribonuclease YSH1 [Verticillium albo-atrum VaMs.102]
Length = 730
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I + D++ +++RHL + + ++ V+IT++ I R R++ LM +I L
Sbjct: 82 KIFFTGDYSREQDRHLVSAEVPKGVKIDVLITESTYGIASHVPRVEREQALMKSITSILN 141
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 142 RGGRVLMPVFALGRAQELLLILDEYW 167
>gi|27372065|gb|AAN87883.1| FEG protein [Arabidopsis thaliana]
Length = 613
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 41 AYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ 100
AY G + K G+ IVY D+N+ +RHL +DR ++ ++I+++ A
Sbjct: 151 AYYAGHVLGAVMVYAKMGDAAIVYTGDYNMTTDRHLGAAKIDR-LQLDLLISESTYATTI 209
Query: 101 QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + R+ + + + + G L+ GR EL +L+ W
Sbjct: 210 RGSKYPREREFLQAVHKCVAGGGKALIPSFALGRAQELCMLLDDYW 255
>gi|46107872|ref|XP_380995.1| hypothetical protein FG00819.1 [Gibberella zeae PH-1]
Length = 864
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I + D++ +++RHL + + ++ V+IT++ I R R++ LM +I L
Sbjct: 221 IFFTGDYSREQDRHLVSAEVPKGVKIDVLITESTYGIASHVPRLEREQALMKSITSILNR 280
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 281 GGRVLMPVFALGRAQELLLILDEYW 305
>gi|402084516|gb|EJT79534.1| endoribonuclease YSH1 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 868
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
+ + D++ +++RHL + R ++ V+IT++ I R R++ LM +I L
Sbjct: 190 VFFTGDYSREQDRHLVSAEVPRGVQIDVLITESTYGIASHVPRMEREQALMKSITGILNR 249
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 250 GGRVLMPVFALGRAQELLLILDEYW 274
>gi|4220489|gb|AAD12712.1| putative cleavage and polyadenylation specifity factor [Arabidopsis
thaliana]
Length = 837
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 41 AYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ 100
AY G + K G+ IVY D+N+ +RHL +DR ++ ++I+++ A
Sbjct: 151 AYYAGHVLGAVMVYAKMGDAAIVYTGDYNMTTDRHLGAAKIDR-LQLDLLISESTYATTI 209
Query: 101 QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + R+ + + + + G L+ GR EL +L+ W
Sbjct: 210 RGSKYPREREFLQAVHKCVAGGGKALIPSFALGRAQELCMLLDDYW 255
>gi|449460766|ref|XP_004148116.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Cucumis sativus]
Length = 649
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
K G+ +VY D+N+ +RHL +DR ++ ++IT++ A + + R+ +
Sbjct: 165 AKVGDAAMVYTGDYNMTPDRHLGAAQIDR-MQLDLLITESTYATTIRDSKYAREREFLKA 223
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ L + G VL+ GR EL +L+ W
Sbjct: 224 VHNCLASGGKVLIPTFALGRAQELCVLLDDYW 255
>gi|74211665|dbj|BAE29190.1| unnamed protein product [Mus musculus]
Length = 684
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYRTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>gi|443926404|gb|ELU45071.1| mRNA 3'-end-processing protein YSH1 [Rhizoctonia solani AG-1 IA]
Length = 409
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I+Y D++ +++RHL L IRP ++I ++ + R +R+ R +++ ++
Sbjct: 139 QILYTGDYSREEDRHLVRAELPP-IRPDLLIVESTYGVQGHEARESREARFTSSVHTIVK 197
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
G+VL+ V GR EL +L++ W
Sbjct: 198 RGGHVLLPVFALGRAQELLLILDEYW 223
>gi|429862463|gb|ELA37111.1| cleavage and polyadenylation specifity 73 kda [Colletotrichum
gloeosporioides Nara gc5]
Length = 831
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I + D++ +++RHL + + ++ V+IT++ I R R++ LM +I L
Sbjct: 185 KIFFTGDYSREQDRHLVSAEVPKGVKIDVLITESTYGIASHVPRLEREQALMKSITGILN 244
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 245 RGGRVLMPVFALGRAQELLLILDEYW 270
>gi|320593246|gb|EFX05655.1| cleavage and polyadenylation specificity factor subunit [Grosmannia
clavigera kw1407]
Length = 857
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I++ D++ + +RHL + + ++ V+IT++ I R R++ LM +I L
Sbjct: 188 KIMFTGDYSRELDRHLVSATVPKGVKVDVLITESTYGIASHVPRLEREQALMKSITGILN 247
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 248 RGGRVLMPVFALGRAQELLLILDEYW 273
>gi|6625904|gb|AAF19420.1|AF203969_1 cleavage and polyadenylation specificity factor 73 kDa subunit [Mus
musculus]
Length = 684
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFWHTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>gi|297814408|ref|XP_002875087.1| hypothetical protein ARALYDRAFT_322516 [Arabidopsis lyrata subsp.
lyrata]
gi|297320925|gb|EFH51346.1| hypothetical protein ARALYDRAFT_322516 [Arabidopsis lyrata subsp.
lyrata]
Length = 819
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 41 AYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ 100
AY G + K G+ IVY D+N+ +RHL +DR ++ ++I+++ A
Sbjct: 151 AYYAGHVLGAVMVYAKVGDAAIVYTGDYNMTTDRHLGAAKIDR-LQLDLLISESTYATTI 209
Query: 101 QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + R+ + + + + G L+ GR EL +L+ W
Sbjct: 210 RGSKYPREREFLQAVHKCVAGGGKALIPSFALGRAQELCMLLDDYW 255
>gi|406866779|gb|EKD19818.1| metallo-beta-lactamase superfamily protein [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 823
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I + D++ + +RHL + + ++ V+IT++ I R R+++LM +I L
Sbjct: 190 KIFFTGDYSREDDRHLVSAEVPKGVKIDVLITESTYGIAAHVPRVEREQQLMKSITSILN 249
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 250 RGGRVLMPVFALGRAQELLLILDEYW 275
>gi|336468884|gb|EGO57047.1| hypothetical protein NEUTE1DRAFT_84705 [Neurospora tetrasperma FGSC
2508]
gi|350288819|gb|EGZ70044.1| Endoribonuclease ysh-1 [Neurospora tetrasperma FGSC 2509]
Length = 853
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I + D++ +++RHL + + ++ V+IT++ I R R++ LM +I L
Sbjct: 188 KIFFTGDYSREEDRHLISAKVPKGVKIDVLITESTYGIASHIPRPEREQALMKSITGILN 247
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 248 RGGRVLMPVFALGRAQELLLILDEYW 273
>gi|224140917|ref|XP_002323823.1| predicted protein [Populus trichocarpa]
gi|222866825|gb|EEF03956.1| predicted protein [Populus trichocarpa]
Length = 250
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V ++Y D++ +++RHL + +F P + I ++ +
Sbjct: 33 WCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQF-SPDICIIESTYGVQ 91
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R R++R I T+ G VL+ GR EL +L++ W N
Sbjct: 92 LHQPRHLREKRFTDVIHSTISLGGRVLIPAFALGRAQELLLILDEYWAN 140
>gi|85079519|ref|XP_956368.1| hypothetical protein NCU03479 [Neurospora crassa OR74A]
gi|74630409|sp|Q8WZS6.1|YSH1_NEUCR RecName: Full=Endoribonuclease ysh-1; AltName: Full=mRNA
3'-end-processing protein ysh-1
gi|18376069|emb|CAD21097.1| related to BRR5 (component of pre-mRNA polyadenylation factor PF I)
[Neurospora crassa]
gi|28917429|gb|EAA27132.1| hypothetical protein NCU03479 [Neurospora crassa OR74A]
Length = 850
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I + D++ +++RHL + + ++ V+IT++ I R R++ LM +I L
Sbjct: 188 KIFFTGDYSREEDRHLISAKVPKGVKIDVLITESTYGIASHIPRPEREQALMKSITGILN 247
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 248 RGGRVLMPVFALGRAQELLLILDEYW 273
>gi|399216826|emb|CCF73513.1| unnamed protein product [Babesia microti strain RI]
Length = 646
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 67 DFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVL 126
DFN ++HL + + + P V+I ++ A + RR+ + L + TL + G VL
Sbjct: 231 DFNTMSDKHLGPAKIPK-LEPDVLICESTYATIVRPSRRSAEVELCKAVKDTLDHGGKVL 289
Query: 127 VAVDTAGRVLELTHMLEQLWR 147
+ V GR EL +LE W+
Sbjct: 290 IPVFAVGRAQELAIILECFWK 310
>gi|358333242|dbj|GAA51791.1| cleavage and polyadenylation specificity factor subunit 3
[Clonorchis sinensis]
Length = 697
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 29 IKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPT 88
IK+ + H+ G +F +++ +++Y DF+ +++RHL C +RP
Sbjct: 93 IKFTAF--HAGHVLGAAMF------LIEIAGVKVLYTGDFSRQEDRHLM-CAEIPHVRPD 143
Query: 89 VVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
V+IT+ I+ +R R+ R + + G L+ GR EL +L++ W N
Sbjct: 144 VLITEATYGIHIHDKREDREARFTRLVHDIVGRGGRCLIPAFALGRAQELMLILDEYWAN 203
>gi|396082329|gb|AFN83939.1| putative beta-lactamase fold-containingexonuclease [Encephalitozoon
romaleae SJ-2008]
Length = 496
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 42 YGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQ 101
Y + ++ +V G++ +VY D++ ++HL G + +RP ++IT++ +
Sbjct: 149 YAGHVLGAAMFHVVV-GDQSVVYTGDYSTTPDKHL-GPASIKCVRPDLLITESTYGSITR 206
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
RR ++ + + + G VL+ + GR EL +L+ W
Sbjct: 207 DCRRVKEREFLKAVSDCIARGGRVLIPIFALGRAQELCLLLDGYW 251
>gi|156082980|ref|XP_001608974.1| RNA-metabolising metallo-beta-lactamase and metallo-beta-lactamase
superfamily domain containing protein [Babesia bovis
T2Bo]
gi|154796224|gb|EDO05406.1| RNA-metabolising metallo-beta-lactamase and metallo-beta-lactamase
superfamily domain containing protein [Babesia bovis]
Length = 760
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
++Y DFN+ ++HL + ++ T ++I +QARR T E L T + L
Sbjct: 264 SVLYTGDFNMTPDKHLGPARVPSLNPDIMICESTYASIIRQARRSTEME-LCTVVHDCLL 322
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L+ W
Sbjct: 323 AGGKVLIPVFAVGRAQELAIILDTYW 348
>gi|340545979|gb|AEK51788.1| cleavage and polyadenylation specific factor 3 [Heteronotia binoei]
gi|402696941|gb|AFQ90659.1| 73kDa cleavage and polyadenylation specific factor 3, partial
[Malaclemys terrapin]
gi|402696943|gb|AFQ90660.1| 73kDa cleavage and polyadenylation specific factor 3, partial
[Testudo hermanni]
Length = 220
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +++ +++Y DF+ +++RHL + I+P ++I ++ +
Sbjct: 10 WCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIESTYGTH 68
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
+R R+ R + + G L+ V GR EL +L++ W+N
Sbjct: 69 IHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 117
>gi|260942735|ref|XP_002615666.1| hypothetical protein CLUG_04548 [Clavispora lusitaniae ATCC 42720]
gi|238850956|gb|EEQ40420.1| hypothetical protein CLUG_04548 [Clavispora lusitaniae ATCC 42720]
Length = 797
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 41 AYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ 100
AY G V+ G ++++ D++ +++RHL + RP ++IT++
Sbjct: 172 AYHAGHVLGACMYFVEIGGLKVLFTGDYSREEDRHLKVAEVPP-TRPDILITESTFGTAT 230
Query: 101 QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR-NKD 150
R ++ R+M NI T+ G +L+ V GR EL +LE+ W N+D
Sbjct: 231 HEPRLEKETRMMKNIHSTILKGGRILMPVFALGRAQELLLILEEYWSLNED 281
>gi|389583415|dbj|GAB66150.1| RNA-metabolising metallo-beta-lactamase domain containing protein
[Plasmodium cynomolgi strain B]
Length = 713
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 33 EYGNHS-SWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVI 91
E GN S + Y + I+KI + ++Y D+N ++HL + + P + I
Sbjct: 220 EMGNMSITPYYAGHVLGACIFKI-EVNNFSVIYTGDYNTVPDKHLGSTKIPS-LTPEIFI 277
Query: 92 TDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
+++ A Y + R+ + L + + + G VL+ V GR EL+ +L+ WR
Sbjct: 278 SESTYATYVRPTRKASELDLCNLVHECVHKGGKVLIPVFAIGRAQELSILLDSYWR 333
>gi|226295077|gb|EEH50497.1| endoribonuclease ysh1 [Paracoccidioides brasiliensis Pb18]
Length = 888
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + + I+ V+IT++ I R R+ LM +I L
Sbjct: 191 ILFTGDYSREEDRHLISAEVPKGIKIDVLITESTFGISSNPPRLEREAALMKSITTILNR 250
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYW 275
>gi|225677757|gb|EEH16041.1| endoribonuclease ysh1 [Paracoccidioides brasiliensis Pb03]
Length = 888
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + + I+ V+IT++ I R R+ LM +I L
Sbjct: 191 ILFTGDYSREEDRHLISAEVPKGIKIDVLITESTFGISSNPPRLEREAALMKSITTILNR 250
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYW 275
>gi|403223285|dbj|BAM41416.1| uncharacterized protein TOT_030000678 [Theileria orientalis strain
Shintoku]
Length = 706
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+++Y DFN ++HL + + P V+I +T A + + ++ + L + TL
Sbjct: 247 KVLYTGDFNTVPDKHLGPAKVPS-LEPDVLICETTYATFVRQSKKATEVELCNLVHDTLI 305
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLWRN 148
N G VL+ V GR EL +L W N
Sbjct: 306 NGGKVLIPVFAVGRAQELAIILNNYWNN 333
>gi|213409816|ref|XP_002175678.1| endoribonuclease ysh1 [Schizosaccharomyces japonicus yFS275]
gi|212003725|gb|EEB09385.1| endoribonuclease ysh1 [Schizosaccharomyces japonicus yFS275]
Length = 771
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+++Y DF+ +++RHLN + +P ++I+++ R ++ RL+ + T+R
Sbjct: 151 KLLYTGDFSREEDRHLNIAEVPP-QKPNILISESTYGTASHQPRLDKEARLLNLVHTTVR 209
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLWRN 148
N G VL+ V GR EL +L++ W +
Sbjct: 210 NGGRVLMPVFALGRAQELLLILDEYWHS 237
>gi|397639513|gb|EJK73612.1| hypothetical protein THAOC_04754 [Thalassiosira oceanica]
Length = 454
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRF-IRPTVVITDTMSAIYQQARRRTRDERLMT 113
++ G ++Y D++++++RHL L R+ P V+I ++ + R R+ R
Sbjct: 172 IEIGGRSVLYTGDYSMEEDRHLMAAELPRYHASPDVLIVESTYGVQVHPTRAEREARFTG 231
Query: 114 NILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
I + + G L+ V GR EL +L++ W+
Sbjct: 232 TIERIVTGGGRCLIPVFALGRAQELLLILDEYWQ 265
>gi|224140919|ref|XP_002323824.1| predicted protein [Populus trichocarpa]
gi|222866826|gb|EEF03957.1| predicted protein [Populus trichocarpa]
Length = 699
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V ++Y D++ +++RHL + +F P + I ++ +
Sbjct: 165 WCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEMPQF-SPDICIIESTYGVQ 223
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R R++R I T+ G VL+ GR EL +L++ W N
Sbjct: 224 LHQPRHIREKRFTDVIHSTISLGGRVLIPAFALGRAQELLLILDEYWSN 272
>gi|295657429|ref|XP_002789283.1| endoribonuclease ysh1 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283953|gb|EEH39519.1| endoribonuclease ysh1 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 892
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + + I+ V+IT++ I R R+ LM +I L
Sbjct: 195 ILFTGDYSREEDRHLISAEVPKGIKIDVLITESTFGISSNPPRLEREAALMKSITTILNR 254
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 255 GGRVLMPVFALGRAQELLLILDEYW 279
>gi|367054168|ref|XP_003657462.1| hypothetical protein THITE_2123200 [Thielavia terrestris NRRL 8126]
gi|347004728|gb|AEO71126.1| hypothetical protein THITE_2123200 [Thielavia terrestris NRRL 8126]
Length = 859
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + + ++ V+IT++ + R R++ LM +I L
Sbjct: 190 ILFTGDYSREQDRHLVSAEVPKGVKIDVLITESTYGVASHIPRLEREQALMKSITGILNR 249
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 250 GGRVLMPVFALGRAQELLLILDEYW 274
>gi|336259697|ref|XP_003344648.1| hypothetical protein SMAC_07216 [Sordaria macrospora k-hell]
gi|380088385|emb|CCC13649.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 857
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I + D++ +++RHL + + ++ V+IT++ I R R++ LM +I L
Sbjct: 188 KIFFTGDYSREEDRHLISAEVPKGVKIDVLITESTYGIASHIPRVEREQALMKSITGILN 247
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 248 RGGRVLMPVFALGRAQELLLILDEYW 273
>gi|198451826|ref|XP_001358526.2| GA20526 [Drosophila pseudoobscura pseudoobscura]
gi|198131664|gb|EAL27667.2| GA20526 [Drosophila pseudoobscura pseudoobscura]
Length = 684
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I+Y DF+ +++RHL + ++P V+IT++ + +R R+ R + + +T+
Sbjct: 179 KILYTGDFSRQEDRHLMAAEVPP-MKPDVLITESTYGTHIHEKREDRENRFTSLVQKTVL 237
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
G L+ V GR EL +L++ W
Sbjct: 238 QGGRCLIPVFALGRAQELLLILDEFW 263
>gi|240975718|ref|XP_002402161.1| cleavage and polyadenylation specificity factor, putative [Ixodes
scapularis]
gi|215491113|gb|EEC00754.1| cleavage and polyadenylation specificity factor, putative [Ixodes
scapularis]
Length = 694
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 153 FHEEK----EVNGIRFWCYNAGHVLGAAMFMIEIAGVKVLYTGDFSRQEDRHLMAAEIPN 208
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I P V+I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 209 -IHPDVLIIESTYGTHIHEKREEREARFTGLVHDIVNRGGRCLIPVFALGRAQELLLILD 267
Query: 144 QLWRN 148
+ W N
Sbjct: 268 EYWSN 272
>gi|195145744|ref|XP_002013850.1| GL23169 [Drosophila persimilis]
gi|194102793|gb|EDW24836.1| GL23169 [Drosophila persimilis]
Length = 684
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I+Y DF+ +++RHL + ++P V+IT++ + +R R+ R + + +T+
Sbjct: 179 KILYTGDFSRQEDRHLMAAEVPP-MKPDVLITESTYGTHIHEKREDRENRFTSLVQKTVL 237
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
G L+ V GR EL +L++ W
Sbjct: 238 QGGRCLIPVFALGRAQELLLILDEFW 263
>gi|346466613|gb|AEO33151.1| hypothetical protein [Amblyomma maculatum]
Length = 618
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 77 FHEEK----EVNGIRFWCYNAGHVLGAAMFMIEIAGVKVLYTGDFSRQEDRHLMAAEIPN 132
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I P V+I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 133 -IHPDVLIIESTYGTHIHEKREEREARFTGLVHDIVNRGGRCLIPVFALGRAQELLLILD 191
Query: 144 QLWRN 148
+ W N
Sbjct: 192 EYWSN 196
>gi|429966183|gb|ELA48180.1| hypothetical protein VCUG_00418 [Vavraia culicis 'floridensis']
Length = 647
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G +W+I K+ E +V D N +KE H++G ++ + + + + +R++RD
Sbjct: 151 GCLWQISKDNEN-VVVAFDINHRKENHVDGLEINNLRKNFIFLMNCEFVGEVPVQRKSRD 209
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD 150
M+ + Q N+GN +V + T R LE+ +L++ K+
Sbjct: 210 SEFMSFLAQ---NHGNKIVILCTFSRYLEICSILDEFLERKN 248
>gi|223997482|ref|XP_002288414.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975522|gb|EED93850.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 557
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRF-IRPTVVITDTMSAIYQQARRRTR 107
G ++ G ++Y D++++++RHL L ++ P ++I ++ + A R R
Sbjct: 167 GAAMFFIEVGGRSVLYTGDYSMEEDRHLMAAELPKYHASPDLLIVESTYGVQVHASRAER 226
Query: 108 DERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
+ R I + + G L+ V GR EL +L++ W+
Sbjct: 227 EARFTGTIERIVTGGGRCLIPVFALGRAQELLLILDEYWQ 266
>gi|402696937|gb|AFQ90657.1| 73kDa cleavage and polyadenylation specific factor 3, partial
[Dibamus sp. JJF-2012]
Length = 220
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +++ +++Y DF+ +++RHL + I+P ++I ++ +
Sbjct: 10 WCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIESTYGTH 68
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
+R R+ R + + G L+ V GR EL +L++ W+N
Sbjct: 69 IHEKREEREARFCNXVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 117
>gi|195452860|ref|XP_002073532.1| GK13096 [Drosophila willistoni]
gi|194169617|gb|EDW84518.1| GK13096 [Drosophila willistoni]
Length = 684
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I+Y DF+ +++RHL + +P V+IT++ + +R R+ R + + +T+
Sbjct: 179 KILYTGDFSRQEDRHLMAAEVPP-TKPDVLITESTYGTHIHEKREDRESRFTSLVQKTVM 237
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW-RNKD 150
G L+ V GR EL +L++ W +N D
Sbjct: 238 QGGRCLIPVFALGRAQELLLILDEFWSQNPD 268
>gi|224108267|ref|XP_002314781.1| predicted protein [Populus trichocarpa]
gi|222863821|gb|EEF00952.1| predicted protein [Populus trichocarpa]
Length = 639
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
K G+ +VY D+N+ +RHL +DR + ++IT++ A + + R+ +
Sbjct: 165 AKVGDSAMVYTGDYNMTPDRHLGAAQIDR-LELDLLITESTYATTIRDSKYAREREFLKA 223
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + + G VL+ GR EL +L+ W
Sbjct: 224 VHECVAGGGKVLIPTFALGRAQELCILLDDYW 255
>gi|253742053|gb|EES98907.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia intestinalis ATCC 50581]
Length = 757
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 63 VYGVDFNLKKE-RHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
+Y DF+ + E RHL + +R ++I ++ +Q R TR+ + I+ T++
Sbjct: 210 LYTGDFSCEPEDRHLQPATFPQ-VRLDLLIIESTYGTIRQKERMTRERDFIDLIVSTVKK 268
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLWRNKD 150
+G VL+ V + GRV EL +L++ WR +
Sbjct: 269 DGCVLLPVFSIGRVQELLCILQEYWREHE 297
>gi|156064885|ref|XP_001598364.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|154691312|gb|EDN91050.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 820
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I + D++ + +RHL + + ++ V+IT++ I R R++ LM ++ L
Sbjct: 188 KIFFTGDYSREDDRHLVSAEVPKGVKIDVLITESTYGIASHIPRLEREQALMKSVTSILN 247
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 248 RGGRVLMPVFALGRAQELLLILDEYW 273
>gi|340521586|gb|EGR51820.1| predicted protein [Trichoderma reesei QM6a]
Length = 887
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I + D++ +++RHL + + I+ V+IT++ I R R++ LM +I L
Sbjct: 226 IFFTGDYSREQDRHLVSAEVPKGIKIDVLITESTYGIASHVPRLEREQALMKSITGILNR 285
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G L+ V GR EL +L++ W
Sbjct: 286 GGRALLPVFALGRAQELLLILDEYW 310
>gi|121700651|ref|XP_001268590.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus clavatus NRRL 1]
gi|119396733|gb|EAW07164.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus clavatus NRRL 1]
Length = 878
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + + I+ V+IT++ I R R+ LM I L
Sbjct: 190 ILFTGDYSREEDRHLIPAEVPKGIKIDVLITESTFGISTNPPRLEREAALMKAITGVLNR 249
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +LE+ W
Sbjct: 250 GGRVLMPVFALGRAQELLLILEEYW 274
>gi|299752177|ref|XP_001830756.2| mRNA 3'-end-processing protein YSH1 [Coprinopsis cinerea
okayama7#130]
gi|298409712|gb|EAU91125.2| mRNA 3'-end-processing protein YSH1 [Coprinopsis cinerea
okayama7#130]
Length = 846
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I+Y D++ +++RHL L IRP V+I ++ ++ R ++ R T + +R
Sbjct: 171 KILYTGDYSREEDRHLVKAELPP-IRPDVLIVESTYGVHTLEGREEKEARFTTLVHSIIR 229
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLWR 147
G+VL+ GR EL +L++ W+
Sbjct: 230 RGGHVLLPAFALGRAQELLLILDEYWK 256
>gi|224140921|ref|XP_002323825.1| predicted protein [Populus trichocarpa]
gi|222866827|gb|EEF03958.1| predicted protein [Populus trichocarpa]
Length = 696
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V ++Y D++ +++RHL + +F P + I ++ +
Sbjct: 165 WCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLCAAEMPQF-SPDICIIESTYGVQ 223
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R R++R I T+ G VL+ GR EL +L++ W N
Sbjct: 224 LHQPRHLREKRFTDVIHSTISLGGRVLIPAFALGRAQELLLILDEYWSN 272
>gi|400600571|gb|EJP68245.1| metallo-beta-lactamase superfamily protein [Beauveria bassiana
ARSEF 2860]
Length = 866
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I + D++ +++RHL + + ++ V+IT++ I R R++ LM +I L
Sbjct: 190 IFFTGDYSREQDRHLVSAEVPKGVKIDVLITESTYGIASHVPRLEREQALMKSITNILNR 249
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G L+ V GR EL +L++ W
Sbjct: 250 GGRALLPVFALGRAQELLLILDEYW 274
>gi|332672684|gb|AEE87269.1| cleavage and polyadenylation specific factor 2 [Sepia officinalis]
Length = 129
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 25/28 (89%)
Query: 126 LVAVDTAGRVLELTHMLEQLWRNKDSGL 153
L+AVDTAGRVLEL +L+Q+WR+ +SGL
Sbjct: 1 LIAVDTAGRVLELAQLLDQMWRSTESGL 28
>gi|19074744|ref|NP_586250.1| similarity to HYPOTHETICAL PROTEIN YO47_METJA [Encephalitozoon
cuniculi GB-M1]
gi|19069386|emb|CAD25854.1| similarity to HYPOTHETICAL PROTEIN YO47_METJA [Encephalitozoon
cuniculi GB-M1]
gi|449329879|gb|AGE96147.1| hypothetical protein ECU10_1350 [Encephalitozoon cuniculi]
Length = 496
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 42 YGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQ 101
Y + ++ +V G++ +VY D++ ++HL + + IRP ++IT++ +
Sbjct: 149 YAGHVLGAAMFHVVV-GDQSVVYTGDYSTTPDKHLGPASI-KCIRPDLLITESTYGSITR 206
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
R+ ++ + + + G VL+ + GR EL +L+ W
Sbjct: 207 DCRKVKEREFLKAVSDCVARGGRVLIPIFALGRAQELCLLLDGYW 251
>gi|255570075|ref|XP_002526000.1| cleavage and polyadenylation specificity factor, putative [Ricinus
communis]
gi|223534732|gb|EEF36424.1| cleavage and polyadenylation specificity factor, putative [Ricinus
communis]
Length = 963
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 56 KEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNI 115
K G+ +VY D+N+ +RHL +DR ++ ++IT++ A + + R+ + +
Sbjct: 166 KVGDSAMVYTGDYNMTPDRHLGAAQIDR-LQLDLLITESTYATTIRDSKYAREREFLKVV 224
Query: 116 LQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + G VL+ GR EL +L+ W
Sbjct: 225 HKCVAGGGKVLIPTFALGRAQELCLLLDDYW 255
>gi|194900154|ref|XP_001979622.1| GG16362 [Drosophila erecta]
gi|190651325|gb|EDV48580.1| GG16362 [Drosophila erecta]
Length = 684
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I+Y DF+ +++RHL + ++P V+IT++ + +R R+ R + + + ++
Sbjct: 179 KILYTGDFSRQEDRHLMAAEVPP-MKPDVLITESTYGTHVHEKREDRENRFTSLVQKIVQ 237
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW-RNKD 150
G L+ V GR EL +L++ W +N D
Sbjct: 238 QGGRCLIPVFALGRAQELLLILDEFWSQNPD 268
>gi|24648013|ref|NP_650738.1| cleavage and polyadenylation specificity factor 73 [Drosophila
melanogaster]
gi|21430620|gb|AAM50988.1| RE31408p [Drosophila melanogaster]
gi|23171662|gb|AAF55578.2| cleavage and polyadenylation specificity factor 73 [Drosophila
melanogaster]
gi|220948314|gb|ACL86700.1| CG7698-PA [synthetic construct]
Length = 684
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I+Y DF+ +++RHL + ++P V+IT++ + +R R+ R + + + ++
Sbjct: 179 KILYTGDFSRQEDRHLMAAEVPP-MKPDVLITESTYGTHIHEKREDRENRFTSLVQKIVQ 237
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW-RNKD 150
G L+ V GR EL +L++ W +N D
Sbjct: 238 QGGRCLIPVFALGRAQELLLILDEFWSQNPD 268
>gi|154322621|ref|XP_001560625.1| hypothetical protein BC1G_00653 [Botryotinia fuckeliana B05.10]
gi|347837188|emb|CCD51760.1| similar to cleavage and polyadenylation specifity factor
[Botryotinia fuckeliana]
Length = 828
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I + D++ + +RHL + + ++ V+IT++ I R R++ LM ++ L
Sbjct: 188 KIFFTGDYSREDDRHLVSAEVPKGVKIDVLITESTYGIASHIPRLEREQALMKSVTSILN 247
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 248 RGGRVLMPVFALGRAQELLLILDEYW 273
>gi|281344001|gb|EFB19585.1| hypothetical protein PANDA_019064 [Ailuropoda melanoleuca]
Length = 237
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKE 73
+ G IWKIVK+GEEEIVY VDFN K+E
Sbjct: 209 MIGGTIWKIVKDGEEEIVYAVDFNHKRE 236
>gi|15079675|gb|AAH11654.1| Cleavage and polyadenylation specific factor 3, 73kDa [Homo
sapiens]
gi|157929136|gb|ABW03853.1| cleavage and polyadenylation specific factor 3, 73kDa [synthetic
construct]
Length = 684
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +++ +++Y DF+ +++RHL + I+P ++I ++ +
Sbjct: 152 WCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIESTYGTH 210
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
+R R+ R + + G L+ V GR EL +L++ W+N
Sbjct: 211 IHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 259
>gi|346323812|gb|EGX93410.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Cordyceps militaris CM01]
Length = 879
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I + D++ +++RHL + + ++ V+IT++ I R R++ LM +I L
Sbjct: 199 IFFTGDYSREQDRHLVSAEVPKGVKIDVLITESTYGIASHVPRLEREQALMKSITNILNR 258
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G L+ V GR EL +L++ W
Sbjct: 259 GGRALLPVFALGRAQELLLILDEYW 283
>gi|195569857|ref|XP_002102925.1| GD20157 [Drosophila simulans]
gi|194198852|gb|EDX12428.1| GD20157 [Drosophila simulans]
Length = 684
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I+Y DF+ +++RHL + ++P V+IT++ + +R R+ R + + + ++
Sbjct: 179 KILYTGDFSRQEDRHLMAAEVPP-MKPDVLITESTYGTHIHEKREDRENRFTSLVQKIVQ 237
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW-RNKD 150
G L+ V GR EL +L++ W +N D
Sbjct: 238 QGGRCLIPVFALGRAQELLLILDEFWSQNPD 268
>gi|195343244|ref|XP_002038208.1| GM18692 [Drosophila sechellia]
gi|194133058|gb|EDW54626.1| GM18692 [Drosophila sechellia]
Length = 684
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I+Y DF+ +++RHL + ++P V+IT++ + +R R+ R + + + ++
Sbjct: 179 KILYTGDFSRQEDRHLMAAEVPP-MKPDVLITESTYGTHIHEKREDRENRFTSLVQKIVQ 237
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW-RNKD 150
G L+ V GR EL +L++ W +N D
Sbjct: 238 QGGRCLIPVFALGRAQELLLILDEFWSQNPD 268
>gi|260942135|ref|XP_002615366.1| hypothetical protein CLUG_04248 [Clavispora lusitaniae ATCC 42720]
gi|238850656|gb|EEQ40120.1| hypothetical protein CLUG_04248 [Clavispora lusitaniae ATCC 42720]
Length = 940
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 12/109 (11%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLN---------GCVLDRFIRPTVVITDTMSAIY 99
G W I K E+I+Y +N K+ LN G + +RP+ +IT T +
Sbjct: 158 GSFWLITKR-LEKIIYAPTWNHSKDSFLNSASFLSPTTGSPISSLVRPSAIITST--ELG 214
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
+ R E+ + + TL N G VL+ +GR LEL ++++ N
Sbjct: 215 SNMSHKKRMEKFLQLVDATLANGGAVLLPTTISGRFLELLRIIDEHLAN 263
>gi|169767044|ref|XP_001817993.1| endoribonuclease ysh1 [Aspergillus oryzae RIB40]
gi|83765848|dbj|BAE55991.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872741|gb|EIT81836.1| mRNA cleavage and polyadenylation factor II complex, BRR5
[Aspergillus oryzae 3.042]
Length = 870
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + + I+ V+IT++ I R R+ LM +I L
Sbjct: 191 ILFTGDYSREEDRHLIPAEVPKGIKIDVLITESTFGISSNPPRLEREAALMKSITGVLNR 250
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYW 275
>gi|302832928|ref|XP_002948028.1| hypothetical protein VOLCADRAFT_79885 [Volvox carteri f.
nagariensis]
gi|300266830|gb|EFJ51016.1| hypothetical protein VOLCADRAFT_79885 [Volvox carteri f.
nagariensis]
Length = 728
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 63 VYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNN 122
+Y D++ +RHL G + P +VI ++ + R+ R++ L+ NI TL
Sbjct: 187 LYTGDYSRLPDRHLPGADTPP-VTPHIVIVESTYGTSRHLPRQQREQLLIDNIRTTLNRG 245
Query: 123 GNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
G VL+ + GR EL +L++ W S L
Sbjct: 246 GRVLMPIVALGRAQELLLLLDEYWEAHKSEL 276
>gi|222445335|ref|ZP_03607850.1| hypothetical protein METSMIALI_00963 [Methanobrevibacter smithii
DSM 2375]
gi|261350104|ref|ZP_05975521.1| putative mRNA 3-end processing factor [Methanobrevibacter smithii
DSM 2374]
gi|222434900|gb|EEE42065.1| arCOG00543 universal archaeal KH-domain/beta-lactamase-domain
protein [Methanobrevibacter smithii DSM 2375]
gi|288860890|gb|EFC93188.1| putative mRNA 3-end processing factor [Methanobrevibacter smithii
DSM 2374]
Length = 636
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ--QARRRTRDERLM 112
+ +G +VY DF ++ R L RF R VI ++ + Q R + ++ +M
Sbjct: 340 IGDGAHNLVYTGDFKYERSRLLEPATF-RFPRAETVIMESTYGGREDIQPSRNSAEKEMM 398
Query: 113 TNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
I +TL+ G VLV V GR EL +LE+ R+
Sbjct: 399 KTIYKTLKRGGKVLVPVFAVGRAQELMVVLEEYMRH 434
>gi|449435478|ref|XP_004135522.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3-I-like [Cucumis sativus]
Length = 481
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
++Y D++ +++RHL + +F P V I ++ + R R++R + T+
Sbjct: 187 VLYTGDYSREEDRHLRAAEMPQF-SPDVCIIESTYGVQLHQPRHIREKRFTDVVHSTISQ 245
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLWRN 148
G VL+ GR EL +L++ W N
Sbjct: 246 GGRVLIPAFALGRAQELLLILDEYWAN 272
>gi|427779921|gb|JAA55412.1| Putative cleavage and polyadenylation specificity factor cpsf
subunit [Rhipicephalus pulchellus]
Length = 737
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 5/137 (3%)
Query: 12 FKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLK 71
+S+ ++ FHE K + W Y G +++ +++Y DF+ +
Sbjct: 184 LESSMEKIETINFHEEK----DVNGIRFWCYNAGHVLGAAMFMIEIAGVKVLYTGDFSRQ 239
Query: 72 KERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDT 131
++RHL + I P V+I ++ + +R R+ R + + G L+ V
Sbjct: 240 EDRHLMAAEIPN-IHPDVLIIESTYGTHIHEKREEREARFTGLVHDIVNRGGRCLIPVFA 298
Query: 132 AGRVLELTHMLEQLWRN 148
GR EL +L++ W N
Sbjct: 299 LGRAQELLLILDEYWSN 315
>gi|238483863|ref|XP_002373170.1| cleavage and polyadenylation specifity factor, 73 kDa subunit
[Aspergillus flavus NRRL3357]
gi|220701220|gb|EED57558.1| cleavage and polyadenylation specifity factor, 73 kDa subunit
[Aspergillus flavus NRRL3357]
Length = 870
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + + I+ V+IT++ I R R+ LM +I L
Sbjct: 191 ILFTGDYSREEDRHLIPAEVPKGIKIDVLITESTFGISSNPPRLEREAALMKSITGVLNR 250
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYW 275
>gi|47224568|emb|CAG03552.1| unnamed protein product [Tetraodon nigroviridis]
Length = 206
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/25 (80%), Positives = 22/25 (88%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKE 73
G IWKIVK+GEEEIVY VDFN K+E
Sbjct: 181 GTIWKIVKDGEEEIVYAVDFNHKRE 205
>gi|148643098|ref|YP_001273611.1| metal-dependent RNase [Methanobrevibacter smithii ATCC 35061]
gi|148552115|gb|ABQ87243.1| predicted metal-dependent RNase [Methanobrevibacter smithii ATCC
35061]
Length = 636
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ--QARRRTRDERLM 112
+ +G +VY DF ++ R L RF R VI ++ + Q R + ++ +M
Sbjct: 340 IGDGAHNLVYTGDFKYERSRLLEPATF-RFPRAETVIMESTYGGREDIQPSRNSAEKEMM 398
Query: 113 TNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
I +TL+ G VLV V GR EL +LE+ R+
Sbjct: 399 KTIYKTLKRGGKVLVPVFAVGRAQELMVVLEEYMRH 434
>gi|195497711|ref|XP_002096215.1| GE25184 [Drosophila yakuba]
gi|194182316|gb|EDW95927.1| GE25184 [Drosophila yakuba]
Length = 684
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I+Y DF+ +++RHL + ++P V+IT++ + +R R+ R + + + ++
Sbjct: 179 KILYTGDFSRQEDRHLMAAEVPP-MKPDVLITESTYGTHIHEKREDRENRFTSLVQKIVQ 237
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW-RNKD 150
G L+ V GR EL +L++ W +N D
Sbjct: 238 QGGRCLIPVFALGRAQELLLILDEFWSQNPD 268
>gi|340058172|emb|CCC52525.1| cleavage and polyadenylation specificity factor,putative,
(fragment), partial [Trypanosoma vivax Y486]
Length = 411
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 15/116 (12%)
Query: 46 IFTGPIWK----IVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPT---VVITDTMSAI 98
+FTG + ++K +E+ Y DF+LK VL+RF+ PT V+ D
Sbjct: 166 VFTGRMLGGYGWLIKYQIDELFYCPDFSLKPSY-----VLNRFVPPTTATVLFIDGSPLR 220
Query: 99 YQQARRRTRDERL---MTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDS 151
+ R +E L + ++L TLRN +VL+ V AGR LE+ ++ L K S
Sbjct: 221 HGGGGGRRYEEHLNAFIRDVLGTLRNGKDVLIPVSVAGRGLEVLAIVTHLLTEKGS 276
>gi|323453344|gb|EGB09216.1| hypothetical protein AURANDRAFT_71470 [Aureococcus anophagefferens]
Length = 1101
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W+Y G +++ G ++Y D++L+++RHL + + P V+I ++
Sbjct: 50 WSYNAGHVLGAAMFMIEIGGVRLLYTGDYSLEEDRHLVPAEVPT-LEPHVLIMESTYGTQ 108
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD 150
+ R R+ + I + ++ G L+ V GR EL +L++ W+ ++
Sbjct: 109 KHESRDVREALFTSTIERIVQRGGRCLIPVFALGRAQELLLILDEYWKERE 159
>gi|339237605|ref|XP_003380357.1| cleavage and polyadenylation specificity factor subunit 3
[Trichinella spiralis]
gi|316976818|gb|EFV60027.1| cleavage and polyadenylation specificity factor subunit 3
[Trichinella spiralis]
Length = 687
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 5/126 (3%)
Query: 21 MFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCV 80
+ FHE K E W Y G +++ I+Y D++ ++RHL
Sbjct: 145 LIDFHEQK----EVNGIKFWCYVAGHVLGACMFMIEIAGVRILYTGDYSRLEDRHLCAAE 200
Query: 81 LDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTH 140
+ IRP V+I ++ R R+ R + + + G L+ V GR EL
Sbjct: 201 VPS-IRPDVLIAESTYGTQIHENREDREHRFTSMVYTIVSRGGRCLIPVFALGRAQELLL 259
Query: 141 MLEQLW 146
+L++ W
Sbjct: 260 ILDEFW 265
>gi|115397403|ref|XP_001214293.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114192484|gb|EAU34184.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 870
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + + ++ V+IT++ I R R+ LM +I L
Sbjct: 191 ILFTGDYSREEDRHLIPAEVPKGVKIDVLITESTFGISSNPPRLEREAALMKSITGVLNR 250
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYW 275
>gi|159111399|ref|XP_001705931.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia lamblia ATCC 50803]
gi|157434022|gb|EDO78257.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia lamblia ATCC 50803]
Length = 757
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 63 VYGVDFNLKKE-RHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
+Y DF+ + E RHL + ++I T I +Q R TR+ + I+ T++
Sbjct: 210 LYTGDFSCEPEDRHLQPATFPQVKLDLLIIESTYGTI-RQKERMTRERDFIDLIVSTVKK 268
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLWRNKD 150
+G VL+ V + GRV EL +L++ WR +
Sbjct: 269 DGCVLLPVFSIGRVQELLCILQEYWREHE 297
>gi|391348443|ref|XP_003748457.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Metaseiulus occidentalis]
Length = 673
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 5/123 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G ++ +I+Y DF+ +++RHL +
Sbjct: 138 FHEEK----EINGIRFWCYHAGHVLGAAMFFIEIAGVKILYTGDFSRQEDRHLMSAEIPS 193
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
++P V+I ++ + +R+ R+ R + + + G L+ V GR EL +L+
Sbjct: 194 -VKPDVLIIESTYGTHIHEKRQDREHRFTHLVQEIVTRGGRCLIPVFALGRAQELLLILD 252
Query: 144 QLW 146
+ W
Sbjct: 253 EYW 255
>gi|299116292|emb|CBN76100.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 752
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +++ ++Y D++++ +RHL + P V+I ++ +
Sbjct: 50 WCYNAGHVLGAAMFMIEIAGVHVLYTGDYSMEADRHLMAAEMPS-TSPDVLIVESTYGVQ 108
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R+ R+ R + + + ++ G L+ V GR EL +L++ W+
Sbjct: 109 VHEPRKERESRFVGTVSKAVKKGGRCLIPVFALGRAQELLLILDEYWQQ 157
>gi|195037533|ref|XP_001990215.1| GH19212 [Drosophila grimshawi]
gi|193894411|gb|EDV93277.1| GH19212 [Drosophila grimshawi]
Length = 686
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I+Y DF+ +++RHL + +P V+IT++ + +R R+ R T + + ++
Sbjct: 181 KILYTGDFSRQEDRHLMAAEVPP-KKPDVLITESTYGTHIHEKREDRESRFTTLVQKIVQ 239
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW-RNKD 150
G L+ V GR EL +L++ W +N D
Sbjct: 240 QGGRCLIPVFALGRAQELLLILDEYWSQNPD 270
>gi|429963288|gb|ELA42832.1| hypothetical protein VICG_00147 [Vittaforma corneae ATCC 50505]
Length = 513
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
VK G++ +VY D++ ++HL +D +RP ++IT++ + R+ ++ + +
Sbjct: 163 VKVGDQSVVYTGDYSTTADQHLGTAWIDT-LRPDLMITESTYGSVIRDCRKAKEREFLQS 221
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
I + G L+ + GR E+ ++E W
Sbjct: 222 IHNCIERGGKTLIPIFALGRAQEICLIVESYW 253
>gi|119494361|ref|XP_001264076.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Neosartorya fischeri NRRL 181]
gi|119412238|gb|EAW22179.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Neosartorya fischeri NRRL 181]
Length = 878
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + + I+ V+IT++ I R R+ LM +I L
Sbjct: 191 ILFTGDYSREEDRHLIPAEVPKGIKIDVLITESTFGISTNPPRLEREAALMKSITGILNR 250
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYW 275
>gi|70996586|ref|XP_753048.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus fumigatus Af293]
gi|74672067|sp|Q4WRC2.1|YSH1_ASPFU RecName: Full=Endoribonuclease ysh1; AltName: Full=mRNA
3'-end-processing protein ysh1
gi|66850683|gb|EAL91010.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus fumigatus Af293]
gi|159131784|gb|EDP56897.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus fumigatus A1163]
Length = 872
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + + I+ V+IT++ I R R+ LM +I L
Sbjct: 191 ILFTGDYSREEDRHLIPAEVPKGIKIDVLITESTFGISTNPPRLEREAALMKSITGILNR 250
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYW 275
>gi|322710530|gb|EFZ02104.1| cleavage and polyadenylation specifity factor [Metarhizium
anisopliae ARSEF 23]
Length = 831
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I + D++ +++RHL + + ++ V+IT++ I R R++ LM +I L
Sbjct: 192 IFFTGDYSREQDRHLVSAEVPKDVKIDVLITESTYGIASHVPRLEREQALMKSITGILNR 251
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G L+ V GR EL +L++ W
Sbjct: 252 GGRALLPVFALGRAQELLLILDEYW 276
>gi|387219865|gb|AFJ69641.1| cleavage and polyadenylation specificity factor subunit 2, partial
[Nannochloropsis gaditana CCMP526]
Length = 137
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 23/35 (65%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCV 80
I G W++ + EEIVY VDFNLK ERHL G V
Sbjct: 93 ILGGCFWRVNYKKMEEIVYAVDFNLKSERHLTGAV 127
>gi|322699261|gb|EFY91024.1| cleavage and polyadenylation specifity factor [Metarhizium acridum
CQMa 102]
Length = 829
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I + D++ +++RHL + + ++ V+IT++ I R R++ LM +I L
Sbjct: 192 IFFTGDYSREQDRHLVSAEVPKDVKIDVLITESTYGIASHVPRLEREQALMKSITGILNR 251
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G L+ V GR EL +L++ W
Sbjct: 252 GGRALLPVFALGRAQELLLILDEYW 276
>gi|346972312|gb|EGY15764.1| endoribonuclease YSH1 [Verticillium dahliae VdLs.17]
Length = 837
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I + D++ +++RHL + + ++ V+IT++ I R R++ L+ +I L
Sbjct: 189 KIFFTGDYSREQDRHLVSAEVPKGVKIDVLITESTYGIASHVPRVEREQALVKSITGILN 248
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 249 RGGRVLMPVFALGRAQELLLILDEYW 274
>gi|308162204|gb|EFO64613.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia lamblia P15]
Length = 737
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 63 VYGVDFNLKKE-RHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
+Y DF+ + E RHL + ++I T I +Q R TR+ + I+ T++
Sbjct: 188 LYTGDFSCEPEDRHLQPATFPQVKLDLLIIESTYGTI-RQKERMTRERDFIDLIVSTVKK 246
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLWR 147
+G VL+ V + GRV EL +L++ WR
Sbjct: 247 DGCVLLPVFSIGRVQELLCILQEYWR 272
>gi|358378169|gb|EHK15851.1| hypothetical protein TRIVIDRAFT_65314 [Trichoderma virens Gv29-8]
Length = 873
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I + D++ +++RHL + + ++ V+IT++ I R R++ LM +I L
Sbjct: 204 IFFTGDYSREQDRHLVSAEVPKGLKIDVLITESTYGIASHVPRLEREQALMKSITGILNR 263
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G L+ V GR EL +L++ W
Sbjct: 264 GGRALLPVFALGRAQELLLILDEYW 288
>gi|393217572|gb|EJD03061.1| Metallo-hydrolase/oxidoreductase [Fomitiporia mediterranea MF3/22]
Length = 826
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I+Y D++ +++RHL + +RP V+I ++ + R T++ R + +R
Sbjct: 172 ILYTGDYSREEDRHLVKAEIPP-VRPDVLIVESTYGVQGHEERDTKEHRFTNLVHSIIRR 230
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLWR 147
G+ L+ V GR EL +LE W+
Sbjct: 231 GGHALLPVFALGRAQELLLILEDYWK 256
>gi|357158307|ref|XP_003578085.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Brachypodium distachyon]
Length = 553
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 41 AYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ 100
AY G K G+ +VY D+N+ +RHL ++R ++ ++IT++ A
Sbjct: 155 AYYAGHVLGAAMVYAKVGDAAMVYTGDYNMTPDRHLGAAQIER-LKLDLLITESTYAKTI 213
Query: 101 QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + R+ + + + + G VL+ GR EL +L+ W
Sbjct: 214 RDSKHAREREFLKAVHKCVSEGGKVLIPTFALGRAQELCILLDDYW 259
>gi|315043764|ref|XP_003171258.1| endoribonuclease ysh1 [Arthroderma gypseum CBS 118893]
gi|311345047|gb|EFR04250.1| endoribonuclease ysh1 [Arthroderma gypseum CBS 118893]
Length = 853
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + + ++ V+IT++ I R R+ LM ++ +
Sbjct: 190 ILFTGDYSREEDRHLISAEVPKSVKIDVMITESTFGISSNPPRLEREAALMKSVTSVINR 249
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 250 GGRVLMPVFALGRAQELLLILDEYW 274
>gi|358396914|gb|EHK46289.1| hypothetical protein TRIATDRAFT_132454 [Trichoderma atroviride IMI
206040]
Length = 881
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I + D++ +++RHL + + ++ V+IT++ I R R++ LM +I L
Sbjct: 200 IFFTGDYSREQDRHLVSAEVPKGLKIDVLITESTYGIASHVPRVEREQALMKSITGILNR 259
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G L+ V GR EL +L++ W
Sbjct: 260 GGRALLPVFALGRAQELLLILDEYW 284
>gi|261191614|ref|XP_002622215.1| endoribonuclease ysh1 [Ajellomyces dermatitidis SLH14081]
gi|239589981|gb|EEQ72624.1| endoribonuclease ysh1 [Ajellomyces dermatitidis SLH14081]
Length = 894
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + I+ V+IT++ + R R+ LM +I L
Sbjct: 198 ILFTGDYSREEDRHLISAEAPKGIKIDVLITESTFGVSSNPPRLEREAALMKSITGVLNR 257
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 258 GGRVLMPVFALGRAQELLLILDEYW 282
>gi|350638481|gb|EHA26837.1| hypothetical protein ASPNIDRAFT_35736 [Aspergillus niger ATCC 1015]
Length = 915
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + + ++ V+IT++ I R R+ LM I L
Sbjct: 237 ILFTGDYSREEDRHLIPAEVPKGVKIDVLITESTFGISSNPPRLEREAALMKAITGVLNR 296
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 297 GGRVLMPVFALGRAQELLLILDEYW 321
>gi|344301243|gb|EGW31555.1| hypothetical protein SPAPADRAFT_67601 [Spathaspora passalidarum
NRRL Y-27907]
Length = 1032
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLN---------GCVLDRFIRPTVVITDTMSAIY 99
G W IVK ++ ++Y +N K+ LN G L +RPT IT
Sbjct: 158 GAFWLIVKRIDK-VIYAPAWNHSKDSFLNSASFISTSTGNPLLSLLRPTAFITAPDLGST 216
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQ 144
+RRT E+ + + TL N G L+ +GR LEL H++++
Sbjct: 217 MPHKRRT--EKFLQLVDATLANGGAALLPTSLSGRFLELFHLIDE 259
>gi|327356883|gb|EGE85740.1| endoribonuclease ysh1 [Ajellomyces dermatitidis ATCC 18188]
Length = 887
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + I+ V+IT++ + R R+ LM +I L
Sbjct: 191 ILFTGDYSREEDRHLISAEAPKGIKIDVLITESTFGVSSNPPRLEREAALMKSITGVLNR 250
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYW 275
>gi|239612611|gb|EEQ89598.1| endoribonuclease ysh1 [Ajellomyces dermatitidis ER-3]
Length = 904
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + I+ V+IT++ + R R+ LM +I L
Sbjct: 191 ILFTGDYSREEDRHLISAEAPKGIKIDVLITESTFGVSSNPPRLEREAALMKSITGVLNR 250
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYW 275
>gi|258578481|ref|XP_002543422.1| predicted protein [Uncinocarpus reesii 1704]
gi|237903688|gb|EEP78089.1| predicted protein [Uncinocarpus reesii 1704]
Length = 875
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + + I+ V+I ++ I R R+ LM ++ L
Sbjct: 191 ILFTGDYSREEDRHLISAEVPKGIKIDVLIAESTFGISSSPPRLERETALMKSVTSILNR 250
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW-RNKD 150
G VL+ V GR EL +L++ W R+ D
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWSRHPD 280
>gi|290978816|ref|XP_002672131.1| predicted protein [Naegleria gruberi]
gi|284085705|gb|EFC39387.1| predicted protein [Naegleria gruberi]
Length = 749
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V+ ++Y DF+ + +RHL G + P V+I ++ I
Sbjct: 179 WCYNAGHVLGAAMFMVEIAGVRVLYTGDFSRQPDRHLLGAETPT-MSPDVLIVESTYGIQ 237
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
+ R++R + + ++ G L+ V GR EL +L++ W
Sbjct: 238 VHESQSEREKRFTQMVTEIVKRGGRCLIPVFALGRAQELLLILDEFWET 286
>gi|320032162|gb|EFW14117.1| cleavage and polyadenylation specificity factor [Coccidioides
posadasii str. Silveira]
Length = 881
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + + I+ V+I ++ I R R+ LM ++ L
Sbjct: 191 ILFTGDYSREEDRHLVSAEVPKGIKIDVLIAESTFGISSNPPRLERETALMKSVTSVLNR 250
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYW 275
>gi|119185911|ref|XP_001243562.1| hypothetical protein CIMG_03003 [Coccidioides immitis RS]
gi|392870265|gb|EJB11994.1| endoribonuclease ysh1 [Coccidioides immitis RS]
Length = 881
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + + I+ V+I ++ I R R+ LM ++ L
Sbjct: 191 ILFTGDYSREEDRHLVSAEVPKGIKIDVLIAESTFGISSNPPRLERETALMKSVTSVLNR 250
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYW 275
>gi|303323846|ref|XP_003071912.1| metallo-beta-lactamase superfamily protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240111619|gb|EER29767.1| metallo-beta-lactamase superfamily protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 881
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + + I+ V+I ++ I R R+ LM ++ L
Sbjct: 191 ILFTGDYSREEDRHLVSAEVPKGIKIDVLIAESTFGISSNPPRLERETALMKSVTSVLNR 250
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYW 275
>gi|145230249|ref|XP_001389433.1| endoribonuclease ysh1 [Aspergillus niger CBS 513.88]
gi|134055550|emb|CAK37196.1| unnamed protein product [Aspergillus niger]
Length = 874
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + + ++ V+IT++ I R R+ LM I L
Sbjct: 191 ILFTGDYSREEDRHLIPAEVPKGVKIDVLITESTFGISSNPPRLEREAALMKAITGVLNR 250
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYW 275
>gi|358365452|dbj|GAA82074.1| cleavage and polyadenylation specifity factor, 73 kDa subunit
[Aspergillus kawachii IFO 4308]
Length = 882
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + + ++ V+IT++ I R R+ LM I L
Sbjct: 191 ILFTGDYSREEDRHLIPAEVPKGVKIDVLITESTFGISSNPPRLEREAALMKAITGVLNR 250
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYW 275
>gi|326475916|gb|EGD99925.1| endoribonuclease ysh1 [Trichophyton tonsurans CBS 112818]
Length = 855
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + + ++ V+IT++ I R R+ LM ++ +
Sbjct: 190 ILFTGDYSREEDRHLISAEVPKGVKIDVMITESTFGISSNPPRLEREAALMKSVTSIINR 249
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 250 GGRVLMPVFALGRAQELLLILDEYW 274
>gi|156096985|ref|XP_001614526.1| RNA-metabolising metallo-beta-lactamase domain containing protein
[Plasmodium vivax Sal-1]
gi|148803400|gb|EDL44799.1| RNA-metabolising metallo-beta-lactamase domain containing protein
[Plasmodium vivax]
Length = 911
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 42 YGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQ 101
Y + I+KI + ++Y D+N ++HL + + P + I+++ A Y +
Sbjct: 230 YAGHVLGACIFKI-EVNNFSVIYTGDYNTVPDKHLGSTKIPS-LTPEIFISESTYATYVR 287
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
R+ + L + + + G VL+ V GR EL+ +L+ W+
Sbjct: 288 PTRKASELDLCNLVHECVHKGGKVLIPVFAIGRAQELSILLDSYWK 333
>gi|326482980|gb|EGE06990.1| endoribonuclease ysh1 [Trichophyton equinum CBS 127.97]
Length = 818
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + + ++ V+IT++ I R R+ LM ++ +
Sbjct: 190 ILFTGDYSREEDRHLISAEVPKGVKIDVMITESTFGISSNPPRLEREAALMKSVTSIINR 249
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 250 GGRVLMPVFALGRAQELLLILDEYW 274
>gi|327293421|ref|XP_003231407.1| endoribonuclease ysh1 [Trichophyton rubrum CBS 118892]
gi|326466523|gb|EGD91976.1| endoribonuclease ysh1 [Trichophyton rubrum CBS 118892]
Length = 855
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + + ++ V+IT++ I R R+ LM ++ +
Sbjct: 190 ILFTGDYSREEDRHLISAEVPKGVKIDVMITESTFGISSNPPRLEREAALMKSVTSIINR 249
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 250 GGRVLMPVFALGRAQELLLILDEYW 274
>gi|70952759|ref|XP_745526.1| cleavage and polyadenylation specificity factor protein [Plasmodium
chabaudi chabaudi]
gi|56525876|emb|CAH78255.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium chabaudi chabaudi]
Length = 327
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
++Y D+N ++HL G + P + I+++ A Y + R++ + L + + +
Sbjct: 244 VIYTGDYNTIPDKHL-GSTKIPVLTPEIFISESTYASYVRPTRKSSELELCNLVNECVHK 302
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL+ +LE+ W
Sbjct: 303 GGKVLIPVFAIGRAQELSILLEEYW 327
>gi|302667649|ref|XP_003025406.1| hypothetical protein TRV_00467 [Trichophyton verrucosum HKI 0517]
gi|291189514|gb|EFE44795.1| hypothetical protein TRV_00467 [Trichophyton verrucosum HKI 0517]
Length = 865
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + + ++ V+IT++ I R R+ LM ++ +
Sbjct: 188 ILFTGDYSREEDRHLISAEVPKGVKIDVMITESTFGISSNPPRLEREAALMKSVTSIINR 247
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 248 GGRVLMPVFALGRAQELLLILDEYW 272
>gi|145350779|ref|XP_001419775.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580007|gb|ABO98068.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 767
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
++Y D++ +RHL + I P VVI ++ + + R R+ R + LR
Sbjct: 175 VLYTGDYSRIADRHLPAADVPA-IPPHVVIVESTYGVSPHSPREEREIRFTEKVQTILRR 233
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW-RNKD 150
G VL+ V GR EL +LE W +N D
Sbjct: 234 GGRVLLPVVALGRAQELLLILEDFWAQNPD 263
>gi|47224566|emb|CAG03550.1| unnamed protein product [Tetraodon nigroviridis]
Length = 765
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 11 FFKSNKKQFPMFPFHETKIKYDEYG 35
FFK KK +PMFP HE +IK+DEYG
Sbjct: 432 FFKQAKKSYPMFPTHEERIKWDEYG 456
>gi|402696939|gb|AFQ90658.1| 73kDa cleavage and polyadenylation specific factor 3, partial
[Draco beccarii]
Length = 220
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +++ +++Y DF+ +++RHL + I+P ++I ++ +
Sbjct: 10 WCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIESTYGTH 68
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
+R R+ R + + G L+ V GR EL +L++ W+
Sbjct: 69 IHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQ 116
>gi|448118544|ref|XP_004203525.1| Piso0_001136 [Millerozyma farinosa CBS 7064]
gi|448120951|ref|XP_004204108.1| Piso0_001136 [Millerozyma farinosa CBS 7064]
gi|359384393|emb|CCE79097.1| Piso0_001136 [Millerozyma farinosa CBS 7064]
gi|359384976|emb|CCE78511.1| Piso0_001136 [Millerozyma farinosa CBS 7064]
Length = 809
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Query: 41 AYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ 100
AY G +++ G ++++ DF+ +++RHL + ++P ++I+++
Sbjct: 171 AYHAGHVLGACMYLIEIGGLKVLFTGDFSCEEDRHLQVAEIPP-VKPDILISESTFGTAT 229
Query: 101 QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
R ++ R+ + I TL G +L+ V GR EL +LE+ W
Sbjct: 230 HEPRLEKEARMTSIIHSTLLKGGRILMPVFALGRAQELLLILEEYW 275
>gi|190346294|gb|EDK38344.2| hypothetical protein PGUG_02442 [Meyerozyma guilliermondii ATCC
6260]
Length = 821
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHL---------NGCVLDRFIRPTVVITDTMSAIY 99
G W I K E+++Y +N K+ L G L + +RPTV+IT+T +
Sbjct: 45 GTFWCITKR-LEKVIYAPSWNHSKDSFLSSSSFLSASTGNPLSQLMRPTVLITNT--DLG 101
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQ 144
+ R E+ + + TL N G V++ +GR LEL H+++
Sbjct: 102 SNLPHKKRAEKFLQLMDATLANGGAVVLPTSLSGRFLELLHLVDH 146
>gi|302499334|ref|XP_003011663.1| hypothetical protein ARB_02217 [Arthroderma benhamiae CBS 112371]
gi|291175215|gb|EFE31023.1| hypothetical protein ARB_02217 [Arthroderma benhamiae CBS 112371]
Length = 749
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + + ++ V+IT++ I R R+ LM ++ +
Sbjct: 84 ILFTGDYSREEDRHLISAEVPKGVKIDVMITESTFGISSNPPRLEREAALMKSVTSIINR 143
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 144 GGRVLMPVFALGRAQELLLILDEYW 168
>gi|307110126|gb|EFN58363.1| hypothetical protein CHLNCDRAFT_142438 [Chlorella variabilis]
Length = 709
Score = 44.3 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 54 IVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMT 113
+V+ G ++Y D++ +RH+ L RP +V+ ++ + + R R++R +
Sbjct: 179 MVEVGGMRLLYTGDYSRIPDRHMPAADLPA-QRPHIVVVESTYGVSRHLPREEREQRFVQ 237
Query: 114 NILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
I + G VL+ V GR EL +LE+ W
Sbjct: 238 RIHTAVARGGRVLLPVVALGRAQELLLILEEYW 270
>gi|344229479|gb|EGV61364.1| hypothetical protein CANTEDRAFT_98614 [Candida tenuis ATCC 10573]
Length = 943
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHL---------NGCVLDRFIRPTVVITDTMSAIY 99
G W +++ E+I+Y +N K+ L G L + +RPT ++T T +
Sbjct: 156 GSFW-LLQRKLEKIIYAPSWNHSKDSFLSAASFLSSSTGNPLSQLVRPTALVTGT--DVG 212
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQ 144
+ R E+ + + TL N G VL+ +GR LEL H++++
Sbjct: 213 SNLSHKKRSEKFLQLVDGTLANGGTVLLPTTISGRFLELLHLVDE 257
>gi|146417489|ref|XP_001484713.1| hypothetical protein PGUG_02442 [Meyerozyma guilliermondii ATCC
6260]
Length = 821
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHL---------NGCVLDRFIRPTVVITDTMSAIY 99
G W I K E+++Y +N K+ L G L + +RPTV+IT+T +
Sbjct: 45 GTFWCITKR-LEKVIYAPSWNHSKDSFLSSSSFLSASTGNPLSQLMRPTVLITNT--DLG 101
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQ 144
+ R E+ + + TL N G V++ +GR LEL H+++
Sbjct: 102 SNLPHKKRAEKFLQLMDATLANGGAVVLPTSLSGRFLELLHLVDH 146
>gi|330923041|ref|XP_003300074.1| hypothetical protein PTT_11224 [Pyrenophora teres f. teres 0-1]
gi|311325959|gb|EFQ91831.1| hypothetical protein PTT_11224 [Pyrenophora teres f. teres 0-1]
Length = 705
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I++ D++ + +RHL + ++ V+IT++ I R R+ +LM I L
Sbjct: 189 KILFTGDYSREDDRHLVSASVPAGVKVDVLITESTFGISMHTPRVEREAQLMKAITDVLN 248
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
G L+ V GR EL +L++ W
Sbjct: 249 RGGRALLPVFALGRAQELLLILDEYW 274
>gi|409080187|gb|EKM80547.1| hypothetical protein AGABI1DRAFT_70926 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 841
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I+Y D++ +++RHL L IRP V++ ++ ++ R ++ R + + +R
Sbjct: 181 KILYTGDYSREEDRHLIKAELPP-IRPDVLVVESTYGVHTGESREEKEHRFTSLVHSIIR 239
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLWR 147
G+VL+ GR EL +L+ W+
Sbjct: 240 RGGHVLLPTFALGRAQELLLILDDYWK 266
>gi|189208340|ref|XP_001940503.1| endoribonuclease YSH1 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187976596|gb|EDU43222.1| endoribonuclease YSH1 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 871
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I++ D++ + +RHL + ++ V+IT++ I R R+ +LM I L
Sbjct: 189 KILFTGDYSREDDRHLVSASVPAGVKVDVLITESTFGISMHTPRVEREAQLMKAITDVLN 248
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
G L+ V GR EL +L++ W
Sbjct: 249 RGGRALLPVFALGRAQELLLILDEYW 274
>gi|66820693|ref|XP_643926.1| beta-lactamase domain-containing protein [Dictyostelium discoideum
AX4]
gi|74860395|sp|Q86A79.1|CPSF3_DICDI RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3; Short=Cleavage and polyadenylation
specificity factor 3
gi|60472339|gb|EAL70292.1| beta-lactamase domain-containing protein [Dictyostelium discoideum
AX4]
Length = 774
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I+Y DF+ +++RHL G ++ V+I ++ + R R++R +++ Q +
Sbjct: 200 KILYTGDFSRQEDRHLMGAETPP-VKVDVLIIESTYGVQVHEPRLEREKRFTSSVHQVVE 258
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
NG L+ V GR EL +L++ W
Sbjct: 259 RNGKCLIPVFALGRAQELLLILDEYW 284
>gi|407919362|gb|EKG12612.1| Beta-lactamase-like protein [Macrophomina phaseolina MS6]
Length = 842
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I++ D++ +++RHL + + ++ V+IT++ I R R+ LM +I +
Sbjct: 189 KILFTGDYSREEDRHLISAEVPKNVKVDVLITESTFGIASHVPRLEREAALMKSITGIIN 248
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
G L+ V GR EL +L++ W
Sbjct: 249 RGGRALLPVFALGRAQELLLILDEYW 274
>gi|452002411|gb|EMD94869.1| hypothetical protein COCHEDRAFT_1222148 [Cochliobolus
heterostrophus C5]
Length = 872
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I++ D++ + +RHL + ++ V+IT++ I R R+ +LM I L
Sbjct: 189 KILFTGDYSREDDRHLVSASVPPGVKIDVLITESTFGISMHTPRVEREAQLMKAITDVLN 248
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
G L+ V GR EL +L++ W
Sbjct: 249 RGGRALLPVFALGRAQELLLILDEYW 274
>gi|451852830|gb|EMD66124.1| hypothetical protein COCSADRAFT_34708 [Cochliobolus sativus ND90Pr]
Length = 872
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I++ D++ + +RHL + ++ V+IT++ I R R+ +LM I L
Sbjct: 189 KILFTGDYSREDDRHLVSASVPPGVKIDVLITESTFGISMHTPRVEREAQLMKAITDVLN 248
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
G L+ V GR EL +L++ W
Sbjct: 249 RGGRALLPVFALGRAQELLLILDEYW 274
>gi|426197081|gb|EKV47008.1| hypothetical protein AGABI2DRAFT_203789 [Agaricus bisporus var.
bisporus H97]
Length = 794
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I+Y D++ +++RHL L IRP V++ ++ ++ R ++ R + + +R
Sbjct: 181 KILYTGDYSREEDRHLIKAELPP-IRPDVLVVESTYGVHTGESREEKEHRFTSLVHSIIR 239
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLWRN 148
G+VL+ GR EL +L+ W+
Sbjct: 240 RGGHVLLPTFALGRAQELLLILDDYWKK 267
>gi|396488788|ref|XP_003842943.1| similar to cleavage and polyadenylation specifity factor
[Leptosphaeria maculans JN3]
gi|312219521|emb|CBX99464.1| similar to cleavage and polyadenylation specifity factor
[Leptosphaeria maculans JN3]
Length = 861
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I++ D++ + +RHL + ++ V+IT++ I R R+ +LM I L
Sbjct: 189 KILFTGDYSREDDRHLVSASVPAGVKVDVLITESTFGISMHTPRVEREAQLMKAITDILN 248
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
G L+ V GR EL +L++ W
Sbjct: 249 RGGRALLPVFALGRAQELLLILDEYW 274
>gi|190346159|gb|EDK38177.2| hypothetical protein PGUG_02275 [Meyerozyma guilliermondii ATCC
6260]
Length = 770
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 41 AYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ 100
AY G V+ G ++++ D++ +++RHL + +RP ++IT++
Sbjct: 163 AYHAGHVLGACMYFVEIGGLKVLFTGDYSREEDRHLQVAEVPP-MRPDILITESTFGTAT 221
Query: 101 QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW-RNKD 150
R ++ R+ I TL G +L+ V GR EL +LE+ W +N+D
Sbjct: 222 HEPRLEKEARMTKIIHSTLLKGGRILMPVFALGRAQELLLILEEYWSQNED 272
>gi|156089433|ref|XP_001612123.1| hypothetical protein [Babesia bovis T2Bo]
gi|154799377|gb|EDO08555.1| hypothetical protein BBOV_III009990 [Babesia bovis]
Length = 943
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVIT-DTMSAIYQQARRRTR 107
G +W++ + G IV + ++ LNGC D VV+T D +
Sbjct: 234 GAVWRL-ELGTRTIVCAPTYRVESVWFLNGCEFDGIRNADVVVTYDQPRLPPEPVNPYVT 292
Query: 108 DERLMTNILQ----TLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD 150
+ M++IL TLR++G+VL+ +D ++++L L +W N D
Sbjct: 293 ECNSMSSILSVIGGTLRSHGSVLIPLDVGSQLIDLLFHLNAVWSNSD 339
>gi|195108751|ref|XP_001998956.1| GI24246 [Drosophila mojavensis]
gi|193915550|gb|EDW14417.1| GI24246 [Drosophila mojavensis]
Length = 686
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I+Y DF+ +++RHL + +P V+IT++ + +R R+ R + + + +
Sbjct: 181 KILYTGDFSRQEDRHLMAAEVPP-KKPDVLITESTYGTHIHEKREDRESRFTSLVQKIVM 239
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW-RNKD 150
G L+ V GR EL +L++ W +N D
Sbjct: 240 QGGRCLIPVFALGRAQELLLILDEFWSQNPD 270
>gi|195395198|ref|XP_002056223.1| GJ10819 [Drosophila virilis]
gi|194142932|gb|EDW59335.1| GJ10819 [Drosophila virilis]
Length = 686
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I+Y DF+ +++RHL + +P V+IT++ + +R R+ R + + + +
Sbjct: 181 KILYTGDFSRQEDRHLMAAEVPP-KKPDVLITESTYGTHIHEKREDRESRFTSLVQKIVM 239
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW-RNKD 150
G L+ V GR EL +L++ W +N D
Sbjct: 240 QGGRCLIPVFALGRAQELLLILDEFWSQNPD 270
>gi|449546825|gb|EMD37794.1| hypothetical protein CERSUDRAFT_154677 [Ceriporiopsis subvermispora
B]
Length = 820
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I+Y D++ +++RHL + IRP V+I ++ + R +++R T + +R
Sbjct: 171 KILYTGDYSREEDRHLVKAEVPP-IRPDVLIVESTYGVQTLEGREEKEQRFTTLVHNIIR 229
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLWR 147
G+VL+ GR EL +L++ W+
Sbjct: 230 RGGHVLLPTFALGRAQELLLILDEYWK 256
>gi|219121689|ref|XP_002181194.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407180|gb|EEC47117.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 602
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Query: 35 GNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDT 94
G S +A G + G +I+Y D++++ +RHL + P V+I +
Sbjct: 143 GGLSFYALNAGHVLGACMFFLSLGGRKILYTGDYSMEDDRHLMAAEIPAE-SPDVLIVEA 201
Query: 95 MSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
+ A R R+ R I + + G L+ V GR EL +L++ W+
Sbjct: 202 TYGVQVHASRAEREARFTGTIERVISRGGRCLIPVFALGRAQELLLILDEYWQ 254
>gi|170093225|ref|XP_001877834.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647693|gb|EDR11937.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 772
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I+Y D++ +++RHL L +RP V+I ++ + R +++R + +R
Sbjct: 171 KILYTGDYSREEDRHLVKAELPP-VRPDVLIVESTYGVQSLEGREEKEQRFTNLVHSVIR 229
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLWR 147
G+VL+ GR EL +L++ W+
Sbjct: 230 RGGHVLLPAFALGRAQELLLILDEYWK 256
>gi|387594760|gb|EIJ89784.1| cleavage and polyadenylation specificity factor 3 [Nematocida
parisii ERTm3]
gi|387596392|gb|EIJ94013.1| cleavage and polyadenylation specificity factor 3 [Nematocida
parisii ERTm1]
Length = 696
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 41 AYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ 100
AY G +VK + ++Y D++ +++RHL V+ + ++I+++ +
Sbjct: 151 AYNAGHVLGAAMFLVKNEDISLLYTGDYSREEDRHLKAAVIPP-MPIDILISESTYGVQC 209
Query: 101 QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+ R+ R +T + ++ G L+ V GR EL +L++ W ++
Sbjct: 210 HQSKEERETRFITGVSDVVKRGGKCLLPVFALGRAQELLLILDEFWDSR 258
>gi|443899092|dbj|GAC76423.1| mRNA cleavage and polyadenylation factor II complex, BRR5
[Pseudozyma antarctica T-34]
Length = 884
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I+Y DF+ +++RHL + +RP V+I ++ R ++ R + I ++
Sbjct: 190 ILYTGDFSREEDRHLVQAEIPP-VRPDVLICESTYGTQTHEPRLDKEHRFTSQIHHIIKR 248
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 249 GGRVLLPVFVLGRAQELLLLLDEYW 273
>gi|452985743|gb|EME85499.1| hypothetical protein MYCFIDRAFT_130659 [Pseudocercospora fijiensis
CIRAD86]
Length = 844
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ + +RHL + R ++ +IT++ I + R+ R+ L+ +I L
Sbjct: 199 ILFTGDYSRETDRHLIPATVPRNVKVDCLITESTFGISTRTPRQERENALIKSITTILNR 258
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLWR 147
G VL+ G EL +LE W+
Sbjct: 259 GGRVLMPTTAVGNTQELLLILEDYWQ 284
>gi|398406895|ref|XP_003854913.1| hypothetical protein MYCGRDRAFT_55193, partial [Zymoseptoria
tritici IPO323]
gi|339474797|gb|EGP89889.1| hypothetical protein MYCGRDRAFT_55193 [Zymoseptoria tritici IPO323]
Length = 855
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ + +RHL + R ++ +IT++ I + R+ R+ L+ +I L
Sbjct: 199 ILFTGDYSRETDRHLIPAAVPRNVKIDCLITESTFGISTRTPRQERENALIKSITGILNR 258
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLWR 147
G VL+ G EL +LE W+
Sbjct: 259 GGRVLMPTTAVGNTQELMLILEDYWQ 284
>gi|210075949|ref|XP_504965.2| YALI0F03817p [Yarrowia lipolytica]
gi|223634672|sp|Q6C2Z7.2|YSH1_YARLI RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|199424917|emb|CAG77772.2| YALI0F03817p [Yarrowia lipolytica CLIB122]
Length = 827
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Query: 29 IKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPT 88
+K+ Y H+ G ++T ++ G ++++ D++ +++RHLN + ++P
Sbjct: 175 VKFTAY--HAGHVLGAAMYT------IEVGGVKVLFTGDYSREEDRHLNQAEVPP-MKPD 225
Query: 89 VVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
++I ++ R R++RL I TL G L+ V GR E+ +L++ W
Sbjct: 226 ILICESTYGTGTHLPRLEREQRLTGLIHSTLDKGGKCLLPVFALGRAQEILLILDEYW 283
>gi|254567914|ref|XP_002491067.1| hypothetical protein [Komagataella pastoris GS115]
gi|238030864|emb|CAY68787.1| hypothetical protein PAS_chr2-1_0816 [Komagataella pastoris GS115]
gi|328352406|emb|CCA38805.1| Cleavage and polyadenylation specificity factor subunit 2
[Komagataella pastoris CBS 7435]
Length = 854
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLN--------GCVLDRFIRPTVVITDTMSAIYQ 100
G W I E+IVY +N K+ LN G + + ++P VIT S +
Sbjct: 157 GTFWSI-NYNNEKIVYAPAWNHSKDSFLNSATFLQSNGHPIPQLVKPASVITG--SDLGS 213
Query: 101 QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+ E+ T + T+ NG V + +GR LEL H+++Q N+
Sbjct: 214 SLSYNKKLEKFFTLVDATIAQNGTVFLPTSMSGRFLELLHLMDQHLGNQ 262
>gi|46360445|gb|AAS80153.1| ACT11D09.9 [Cucumis melo]
Length = 708
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
K G+ +VY D+N+ +RHL +DR ++ ++IT++ A + + R+ +
Sbjct: 197 AKVGDAAMVYTGDYNMTPDRHLGAAQIDR-MQLDLLITESTYATTIRDSKYAREREFLKA 255
Query: 115 ILQTLRNNGNVLVAVDTAGRV-LELTHMLEQLW 146
+ L + G VL+ GR EL +L+ W
Sbjct: 256 VHNCLASGGKVLIPTFALGRAQQELCVLLDDYW 288
>gi|388852694|emb|CCF53612.1| related to YSH1-component of pre-mRNA polyadenylation factor PF I
[Ustilago hordei]
Length = 888
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I+Y DF+ +++RHL + ++P V+I ++ R ++ R + I ++
Sbjct: 190 ILYTGDFSREEDRHLVQAEIPP-VKPDVLICESTYGTQTHEPRHDKEHRFTSQIHHIIKR 248
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 249 GGRVLLPVFVLGRAQELLLLLDEYW 273
>gi|320583131|gb|EFW97347.1| Putative endoribonuclease [Ogataea parapolymorpha DL-1]
Length = 702
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 9/120 (7%)
Query: 29 IKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPT 88
I++ Y H+ G +F V+ G + ++ D++ +++RHL+ L RP
Sbjct: 148 IRFTAY--HAGHVLGAAMF------FVELGGLKFLFTGDYSREEDRHLSSAELPPS-RPD 198
Query: 89 VVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
++IT++ R R+ +L I T++ G L+ V GR E+ +L++ W+N
Sbjct: 199 LLITESTFGTATHVPRVEREAKLTHVIHSTIQQGGRCLLPVFALGRAQEILLILDEYWQN 258
>gi|325090760|gb|EGC44070.1| endoribonuclease ysh1 [Ajellomyces capsulatus H88]
Length = 893
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + ++ V+IT++ + R R+ L+ +I L
Sbjct: 191 ILFTGDYSREEDRHLISAEAPKGVKVDVLITESTFGVSSNPPRLEREAALIKSITSILNR 250
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYW 275
>gi|70606450|ref|YP_255320.1| metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius DSM 639]
gi|449066664|ref|YP_007433746.1| metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius N8]
gi|449068938|ref|YP_007436019.1| metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius Ron12/I]
gi|68567098|gb|AAY80027.1| hypothetical metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius DSM 639]
gi|449035172|gb|AGE70598.1| metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius N8]
gi|449037446|gb|AGE72871.1| metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius Ron12/I]
Length = 631
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+ EG +VY DF + + L+ D FIR +I +T + Q R + +L+
Sbjct: 336 IGEGLHNVVYTGDFKYARTKLLDKAN-DEFIRVDTMIMETTYGAHDQENREESEAKLIDI 394
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
I +T+ G VL+ V + GR E+ ++ +NK
Sbjct: 395 INKTISKGGKVLIPVLSVGRGQEIMLVINDAMKNK 429
>gi|399216276|emb|CCF72964.1| unnamed protein product [Babesia microti strain RI]
Length = 916
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%)
Query: 54 IVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMT 113
++ G ++I+ +L + HLN L P ++ITD + + ++
Sbjct: 167 VLTMGTKQILIARKISLISKWHLNSLSLSTVNNPYLLITDFPKLSINACLLHSSLDMVIH 226
Query: 114 NILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
+ TL+N VL+ +D R++EL H E W++
Sbjct: 227 KTINTLKNGNCVLLPIDIDSRMVELLHHFEMCWKS 261
>gi|154282371|ref|XP_001541981.1| hypothetical protein HCAG_02152 [Ajellomyces capsulatus NAm1]
gi|150410161|gb|EDN05549.1| hypothetical protein HCAG_02152 [Ajellomyces capsulatus NAm1]
Length = 925
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + ++ V+IT++ + R R+ L+ +I L
Sbjct: 191 ILFTGDYSREEDRHLISAEAPKGVKVDVLITESTFGVSSNPPRLEREAALIKSITSILNR 250
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYW 275
>gi|156848581|ref|XP_001647172.1| hypothetical protein Kpol_1036p59 [Vanderwaltozyma polyspora DSM
70294]
gi|156117856|gb|EDO19314.1| hypothetical protein Kpol_1036p59 [Vanderwaltozyma polyspora DSM
70294]
Length = 821
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 11/113 (9%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCV--------LDRFIRPTVVITDTMSAIYQ 100
G IW ++ E+ +VY +N K+ LNG L ++PT +IT ++
Sbjct: 162 GSIWCLLTYSEK-LVYAPHWNHTKDTILNGAALLDNTGKPLSTLMKPTAIIT-SLGRFGS 219
Query: 101 QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQ-LWRNKDSG 152
R R + ++ + L NNG++++ VD G+ L+L + L+ N SG
Sbjct: 220 ALSFRKRSKNFNDSLKRGLSNNGSIMIPVDITGKFLDLFVQVHNFLYENSKSG 272
>gi|296803464|ref|XP_002842585.1| endoribonuclease ysh1 [Arthroderma otae CBS 113480]
gi|238838904|gb|EEQ28566.1| endoribonuclease ysh1 [Arthroderma otae CBS 113480]
Length = 854
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + + ++ V+IT++ I R R+ L+ ++ +
Sbjct: 190 ILFTGDYSREEDRHLISAEVPKGVKIDVMITESTFGISSNPPRLEREAALIKSVTSIINR 249
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 250 GGRVLMPVFALGRAQELLLILDEYW 274
>gi|146421308|ref|XP_001486604.1| hypothetical protein PGUG_02275 [Meyerozyma guilliermondii ATCC
6260]
Length = 770
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 41 AYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ 100
AY G V+ G ++++ D++ +++RHL + +RP ++IT++
Sbjct: 163 AYHAGHVLGACMYFVEIGGLKVLFTGDYSREEDRHLQVAEVPP-MRPDILITESTFGTAT 221
Query: 101 QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW-RNKD 150
R ++ R+ I TL G +L+ V GR EL +LE+ W +N+D
Sbjct: 222 HEPRLEKEARMTKIIHLTLLKGGRILMPVFALGRAQELLLILEEYWLQNED 272
>gi|425780830|gb|EKV18826.1| Endoribonuclease ysh1 [Penicillium digitatum PHI26]
gi|425783067|gb|EKV20936.1| Endoribonuclease ysh1 [Penicillium digitatum Pd1]
Length = 862
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 67 DFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVL 126
D++ +++RHL + + V+IT++ I R R+ LM +I L G VL
Sbjct: 196 DYSREEDRHLIPAAVPSGTKIDVLITESTFGISSNPPRLEREAALMKSITSILNRGGRVL 255
Query: 127 VAVDTAGRVLELTHMLEQLW 146
+ V GR EL +L++ W
Sbjct: 256 MPVFALGRAQELLLILDEYW 275
>gi|225561321|gb|EEH09601.1| endoribonuclease ysh1 [Ajellomyces capsulatus G186AR]
Length = 903
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + ++ V+IT++ + R R+ L+ +I L
Sbjct: 191 ILFTGDYSREEDRHLISAEAPKGVKVDVLITESTFGVSSNPPRLEREAALIKSITSILNR 250
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYW 275
>gi|150865856|ref|XP_001385241.2| hypothetical protein PICST_89936 [Scheffersomyces stipitis CBS
6054]
gi|149387112|gb|ABN67212.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 793
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 41 AYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ 100
AY G V+ G ++++ D++ ++ RHL+ + RP ++IT++
Sbjct: 165 AYHAGHVLGACMYFVEIGGLKVLFTGDYSREENRHLHAAEVPP-TRPDILITESTFGTGT 223
Query: 101 QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW-RNKD 150
+ ++RL+ NI TL G VL+ V + G EL +L++ W +N+D
Sbjct: 224 LEPKADLEKRLVQNIHATLTKGGRVLMPVFSLGNAQELLLILDEYWEKNED 274
>gi|378756364|gb|EHY66388.1| cleavage and polyadenylation specificity factor [Nematocida sp. 1
ERTm2]
Length = 692
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 41 AYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ 100
AY G +VK ++Y D++ +++RHL V+ + ++I+++ +
Sbjct: 151 AYNAGHVLGAAMFLVKNENISLLYTGDYSREEDRHLKAAVIPP-MPIDILISESTYGVQC 209
Query: 101 QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+ R+ R +T + ++ G L+ V GR EL +L++ W +
Sbjct: 210 HQSKEEREHRFITGVSDVVKRGGKCLLPVFALGRAQELLLILDEFWEAR 258
>gi|294658126|ref|XP_460457.2| DEHA2F02134p [Debaryomyces hansenii CBS767]
gi|218511903|sp|Q6BMW3.2|YSH1_DEBHA RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|202952895|emb|CAG88764.2| DEHA2F02134p [Debaryomyces hansenii CBS767]
Length = 815
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 41 AYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ 100
AY G ++ G ++++ D++ +++RHL + I+P ++IT++
Sbjct: 171 AYHAGHVLGACMYFIEIGGLKVLFTGDYSSEEDRHLQVAEVPP-IKPDILITESTFGTAT 229
Query: 101 QARRRTRDERLMTNILQ-TLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD 150
R ++ R MTNI+ TL G +L+ V GR EL +LE+ W D
Sbjct: 230 HEPRLEKETR-MTNIIHSTLLKGGRILMPVFALGRAQELLLILEEYWSLND 279
>gi|348686031|gb|EGZ25846.1| hypothetical protein PHYSODRAFT_478942 [Phytophthora sojae]
Length = 733
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G +++ G +++Y D++L+ +RHL L P V+I ++ + R+
Sbjct: 166 GACMYLIEIGGVKVLYTGDYSLENDRHLMAAELPA-CSPDVLIVESTYGVQVHQSVVERE 224
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R + +R G L+ V GR EL +L++ WR+
Sbjct: 225 GRFTGQVEAVVRRGGRCLIPVFALGRTQELLLILDEHWRS 264
>gi|385305954|gb|EIF49896.1| mrna cleavage and polyadenylation specificity factor complex
subunit ysh1 [Dekkera bruxellensis AWRI1499]
Length = 295
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G +V+ G + ++ D++ +++RHL+ + + P ++I ++ R R+
Sbjct: 76 GAAMFLVEMGGLKFLFTGDYSREEDRHLSSAEVPD-VTPDLLIVESTFGTATHVPRLERE 134
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW-RNKD 150
+L T I TL+ G L+ V GR E+ +L++ W R+KD
Sbjct: 135 NKLTTVIHSTLQQGGRCLLPVFALGRAQEILLILDEYWQRHKD 177
>gi|15679214|ref|NP_276331.1| cleavage and polyadenylation specificity factor
[Methanothermobacter thermautotrophicus str. Delta H]
gi|333944120|pdb|2YCB|A Chain A, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
gi|333944121|pdb|2YCB|B Chain B, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
gi|2622312|gb|AAB85692.1| cleavage and polyadenylation specificity factor
[Methanothermobacter thermautotrophicus str. Delta H]
Length = 636
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ--QARRRTRDERLM 112
+ +G+ +VY DF ++ R L +RF R ++ ++ ++ Q R ++ L+
Sbjct: 340 IGDGQHNMVYTGDFKYEQSRLLEAAA-NRFPRIETLVMESTYGGHEDVQPSRNRAEKELV 398
Query: 113 TNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
I TLR G +L+ V GR EL +LE+ R
Sbjct: 399 KTIYSTLRRGGKILIPVFAVGRAQELMIVLEEYIR 433
>gi|443725897|gb|ELU13297.1| hypothetical protein CAPTEDRAFT_184406 [Capitella teleta]
Length = 668
Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+++Y DF+ +++RHL + ++P V+IT++ + R R+ R + I +
Sbjct: 161 KVLYTGDFSREEDRHLMAAEIPN-VKPDVLITESTYGTHIHEPREEREGRFTSLISDIVN 219
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
G L+ V GR EL +L++ W
Sbjct: 220 RGGRCLIPVFALGRAQELLLILDEYW 245
>gi|301111988|ref|XP_002905073.1| cleavage and polyadenylation specificity factor subunit 3
[Phytophthora infestans T30-4]
gi|262095403|gb|EEY53455.1| cleavage and polyadenylation specificity factor subunit 3
[Phytophthora infestans T30-4]
Length = 724
Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G +++ G +++Y D++L+ +RHL L P V+I ++ + R+
Sbjct: 166 GACMYLIEIGGVKVLYTGDYSLENDRHLMAAELPA-CSPDVLIVESTYGVQVHQSVVERE 224
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R + +R G L+ V GR EL +L++ WR+
Sbjct: 225 GRFTGQVEAVVRRGGRCLIPVFALGRTQELLLILDEHWRS 264
>gi|82704800|ref|XP_726704.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23482224|gb|EAA18269.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 954
Score = 42.4 bits (98), Expect = 0.062, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
++Y D+N ++HL G + P + I+++ A Y + R++ + L + + +
Sbjct: 244 VIYTGDYNTIPDKHL-GSTKIPVLTPEIFISESTYASYVRPTRKSSELELCNLVNECVHK 302
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL+ +LE+ W
Sbjct: 303 GGKVLIPVFAIGRAQELSILLEEYW 327
>gi|238585297|ref|XP_002390824.1| hypothetical protein MPER_09839 [Moniliophthora perniciosa FA553]
gi|215454706|gb|EEB91754.1| hypothetical protein MPER_09839 [Moniliophthora perniciosa FA553]
Length = 220
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I+Y D++ +++RHL + IRP V+I ++ + R ++ R T + +R
Sbjct: 128 ILYTGDYSREEDRHLVKAEIPP-IRPDVLIVESTYGVQSLESRPEKELRFTTLVHSIIRR 186
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLWRN 148
G+VL+ GR EL +L++ W+
Sbjct: 187 GGHVLLPQFALGRAQELLLILDEYWKK 213
>gi|434385192|ref|YP_007095803.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Chamaesiphon minutus PCC 6605]
gi|428016182|gb|AFY92276.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Chamaesiphon minutus PCC 6605]
Length = 885
Score = 42.4 bits (98), Expect = 0.068, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+K G I+Y D+N R G L + ++IT++ RRT++ L+
Sbjct: 445 MKYGNRSILYTGDYNTTSSRTAEGLKLADLPQADILITESTYGSDTHPSRRTQESDLIKA 504
Query: 115 ILQTLRNNGNVLVAVDTAGRVLEL 138
I++ ++ GNVL+ GR E+
Sbjct: 505 IVEVVQAGGNVLIPAFALGRAQEI 528
>gi|68077031|ref|XP_680435.1| cleavage and polyadenylation specificity factor protein [Plasmodium
berghei strain ANKA]
gi|56501360|emb|CAH96636.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium berghei]
Length = 967
Score = 42.4 bits (98), Expect = 0.069, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
++Y D+N ++HL G + P + I+++ A Y + R++ + L + + +
Sbjct: 244 VIYTGDYNTIPDKHL-GSTKIPVLTPEIFISESTYASYVRPTRKSSELELCNLVNECVHK 302
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL+ +LE+ W
Sbjct: 303 GGKVLIPVFAIGRAQELSILLEEYW 327
>gi|353239750|emb|CCA71648.1| related to YSH1-component of pre-mRNA polyadenylation factor PF I
[Piriformospora indica DSM 11827]
Length = 756
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+++Y D++ +++RHL + IRP V+I ++ + + R++R + + ++
Sbjct: 170 KVLYTGDYSREEDRHLVQAQVPS-IRPDVLICESTYGVQKHEELSGREKRFVDLVTAVVK 228
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW-RNKD 150
G+VL+ GR E+ +LE+ W RN D
Sbjct: 229 RGGHVLLPAFALGRAQEILLILEEHWSRNPD 259
>gi|146304363|ref|YP_001191679.1| beta-lactamase domain-containing protein [Metallosphaera sedula DSM
5348]
gi|145702613|gb|ABP95755.1| beta-lactamase domain protein [Metallosphaera sedula DSM 5348]
Length = 421
Score = 42.4 bits (98), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 15/139 (10%)
Query: 20 PMFPFHETKIKYDEYGNHSSWAYGEEI----FT----------GPIWKIVKEGEEEIVYG 65
P PF ++K N ++ YGEE+ FT G +VK + +I Y
Sbjct: 103 PKVPFEWVEVK-KTMDNFRTFNYGEEVEIGGFTVTTSSAGHIPGSAITVVKTEKGDIAYT 161
Query: 66 VDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNV 125
D N+ + + L+ + V+IT+ + R++ +E ++++ L G V
Sbjct: 162 GDINVTMAKLVKPAELEVMRKSRVIITEATYGKFNHPTRKSVEEEFYASVMEVLEGGGTV 221
Query: 126 LVAVDTAGRVLELTHMLEQ 144
LV + R E+ +L +
Sbjct: 222 LVPAFSLSRSQEILSILAE 240
>gi|292655937|ref|YP_003535834.1| mRNA 3-end processing factor [Haloferax volcanii DS2]
gi|448289926|ref|ZP_21481085.1| mRNA 3-end processing factor [Haloferax volcanii DS2]
gi|291371389|gb|ADE03616.1| mRNA 3-end processing factor [Haloferax volcanii DS2]
gi|445580790|gb|ELY35162.1| mRNA 3-end processing factor [Haloferax volcanii DS2]
Length = 410
Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 21/137 (15%)
Query: 23 PFHETKIK-------YDEYGNHSSWAYGEEI-------FTGPIWKIVKEGEEEIVYGVDF 68
PF ET ++ + +YG S A G E+ G +V +GE ++Y DF
Sbjct: 100 PFTETHVRRMTQQSAHHDYGE-SFEAAGHEVTFYNAGHIPGSAHVLVDDGETRLLYTADF 158
Query: 69 NLKKERHLNGCVLDRFIRPT--VVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVL 126
+ +R ++G RP VVI ++ + + R T +ER + ++ T+ G V+
Sbjct: 159 HTDDQRLVSGTT----ARPDADVVICESTYSDVEHEDRATVEERFVESVRTTVWEGGTVV 214
Query: 127 VAVDTAGRVLELTHMLE 143
V GR EL +L+
Sbjct: 215 VPAFAIGRTQELLMVLD 231
>gi|402465801|gb|EJW01455.1| hypothetical protein EDEG_00447 [Edhazardia aedis USNM 41457]
Length = 774
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G ++K G ++++Y D++ + +RHL I +IT++ + R R+
Sbjct: 156 GAAMFLLKIGSKKLLYTGDYSTEPDRHLKEAKCPGKIN--FLITESTYGVQCHLPREERE 213
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD 150
+R + + ++ G VL+ V GR E+ +LE+ W N +
Sbjct: 214 KRFLNAVRDIIKRRGKVLLPVFALGRAQEILLILEEYWDNNE 255
>gi|255957115|ref|XP_002569310.1| Pc21g23430 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591021|emb|CAP97240.1| Pc21g23430 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 862
Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 67 DFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVL 126
D++ +++RHL + + V+IT++ I R R+ LM +I L G VL
Sbjct: 196 DYSREEDRHLIPAAVPSGTKIDVLITESTFGISSNPPRLEREAALMKSITGILNRGGRVL 255
Query: 127 VAVDTAGRVLELTHMLEQLW 146
+ V GR EL +L++ W
Sbjct: 256 MPVFALGRAQELLLILDEYW 275
>gi|403158620|ref|XP_003319317.2| hypothetical protein PGTG_01491 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375166386|gb|EFP74898.2| hypothetical protein PGTG_01491 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 778
Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRF-IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
++Y D++ +++RHL + + +P V+I ++ + R ++ER T + L+
Sbjct: 197 VLYTGDYSTEEDRHLIPARVPNWNEKPDVMICESTYGVQSLEPRFEKEERFTTLVQSILK 256
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLWRN 148
G VL+ V GR EL +L++ W N
Sbjct: 257 RGGRVLMPVFALGRAQELLLILDEYWAN 284
>gi|392338884|ref|XP_003753662.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3-like [Rattus norvegicus]
gi|392345811|ref|XP_003749372.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3-like [Rattus norvegicus]
Length = 1015
Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 14/131 (10%)
Query: 24 FHETK----IKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGC 79
FHE K IK+ W Y G + +++ +I+Y DF+ ++ RHL
Sbjct: 141 FHEVKAIEVIKF--------WCYHASHVLGAVMFVIEIAGVKILYTGDFSRQEVRHLMAA 192
Query: 80 VLDRF--IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLE 137
+ + I+ ++I ++M + + + R + + G L+ V GR E
Sbjct: 193 EIPXYLYIKSDILIVESMYGTHIYEKHEEXEARFCNAVHNIVNKXGRGLIPVLVLGRAQE 252
Query: 138 LTHMLEQLWRN 148
L +L++ W++
Sbjct: 253 LLPILDEYWQD 263
>gi|392956492|ref|ZP_10322019.1| RNA-metabolising metallo-beta-lactamase [Bacillus macauensis
ZFHKF-1]
gi|391877474|gb|EIT86067.1| RNA-metabolising metallo-beta-lactamase [Bacillus macauensis
ZFHKF-1]
Length = 896
Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 22 FPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVL 81
PF + + + +S+ G I ++ I +GE+ V G D + K R + G V+
Sbjct: 127 LPFPANQTLHIGHVKITSYRAGH-ILGAVMFLIEGDGEKLFVTG-DLSFKAGRTIPGAVV 184
Query: 82 DRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHM 141
+ I P VVI ++ + R + ++RL ++ T+ G L+ GR E+ +
Sbjct: 185 PKHIEPDVVIMESTYGNRAHSDRNSEEKRLAEHVAATIAGGGFALIPAFALGRAQEVLLI 244
Query: 142 LE 143
L+
Sbjct: 245 LQ 246
>gi|430813249|emb|CCJ29377.1| unnamed protein product [Pneumocystis jirovecii]
Length = 574
Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 9/120 (7%)
Query: 29 IKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPT 88
+K+ Y H+ G +F + I +I++ D++ +++RHL + I+P
Sbjct: 41 VKFTPY--HAGHVLGAAMFFIEVAGI------KILFTGDYSREEDRHLIPAEVPP-IQPD 91
Query: 89 VVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
++IT++ ++ RL + I +R G VL+ V GR EL ++++ W N
Sbjct: 92 ILITESTYGTASHQPISEKESRLTSIIHSIIRRGGRVLIPVFALGRTQELMLIIDEYWHN 151
>gi|302679538|ref|XP_003029451.1| hypothetical protein SCHCODRAFT_59058 [Schizophyllum commune H4-8]
gi|300103141|gb|EFI94548.1| hypothetical protein SCHCODRAFT_59058 [Schizophyllum commune H4-8]
Length = 786
Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I+Y D++ +++RHL L IRP V+I ++ + R ++ R + +R
Sbjct: 172 ILYTGDYSREEDRHLVKAELPP-IRPDVLIVESTYGVQSHEPRDEKELRFTNLVHSIIRR 230
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLWR 147
G+VL+ GR EL +L++ W+
Sbjct: 231 GGHVLLPQFALGRAQELLLILDEYWK 256
>gi|452819966|gb|EME27015.1| cleavage and polyadenylation specifity factor protein [Galdieria
sulphuraria]
Length = 717
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
WAY G +V+ ++Y DF+ +++RHL + F +++ T
Sbjct: 164 WAYNAGHVLGAAMFLVEIAGVRVLYTGDFSRQEDRHLKEAEIPPFPPDIIIVESTYGVQV 223
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ R+ R+ R + + +R G VL+ V GR EL +LE+ W
Sbjct: 224 HEPRK-IREARFTQKVAEIVRRGGRVLLPVFALGRAQELLLILEEYW 269
>gi|343428147|emb|CBQ71677.1| related to YSH1-component of pre-mRNA polyadenylation factor PF I
[Sporisorium reilianum SRZ2]
Length = 878
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I+Y DF+ +++RHL + ++P V+I ++ R ++ R + I ++
Sbjct: 190 ILYTGDFSREEDRHLVQAEIPP-VKPDVLICESTYGTQTHEPRLDKEHRFTSQIHHIIKR 248
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 249 GGRVLLPVFVLGRAQELLLLLDEYW 273
>gi|219123319|ref|XP_002181974.1| cleavage and polyadenylation specific factor [Phaeodactylum
tricornutum CCAP 1055/1]
gi|217406575|gb|EEC46514.1| cleavage and polyadenylation specific factor [Phaeodactylum
tricornutum CCAP 1055/1]
Length = 1001
Score = 42.0 bits (97), Expect = 0.088, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 16/104 (15%)
Query: 59 EEEIVYGVDFNLKKERHLNG-CVLDRFIRPTVVITDTMSAIYQQARRR------------ 105
E +V +++ KE HL+ +L P V++T + AR
Sbjct: 195 ETVVVLTTQYHVAKELHLDSSTILKHATTPDVLVTHPGGPALRLARSNVQNTVTPLVPPQ 254
Query: 106 --TRDER-LMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
T+ ER L+ +L LR +GNVL+ D +GRVLE+ L W
Sbjct: 255 MVTQVERVLVETVLSVLRRDGNVLLPCDVSGRVLEVLLALHNHW 298
>gi|71005902|ref|XP_757617.1| hypothetical protein UM01470.1 [Ustilago maydis 521]
gi|74703664|sp|Q4PEJ3.1|YSH1_USTMA RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|46097110|gb|EAK82343.1| hypothetical protein UM01470.1 [Ustilago maydis 521]
Length = 880
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I+Y DF+ +++RHL + ++P V+I ++ R ++ R + I ++
Sbjct: 190 ILYTGDFSREEDRHLVQAEIPP-VKPDVLICESTYGTQTHEPRLDKEHRFTSQIHHIIKR 248
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 249 GGRVLLPVFVLGRAQELLLLLDEYW 273
>gi|50286175|ref|XP_445516.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524821|emb|CAG58427.1| unnamed protein product [Candida glabrata]
Length = 843
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 22/122 (18%)
Query: 30 KYDE---YGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLN--------G 78
KYD + +S +A G G IW I E+ ++Y +N ++ LN G
Sbjct: 145 KYDGLSLFAYNSGYAPG-----GAIWCITTYSEK-LIYAPRWNHTRDTILNAANLLDNTG 198
Query: 79 CVLDRFIRPTVVITD-TMSAIYQQARRRTRDERLMTNILQT-LRNNGNVLVAVDTAGRVL 136
L +RP+ ++T+ Q R+R + + +IL+T L NNGN+L+ VD G+ L
Sbjct: 199 KPLSSLMRPSAIVTNFDHFGSSQPFRKRAKSFK---DILKTKLSNNGNILIPVDIGGKFL 255
Query: 137 EL 138
+L
Sbjct: 256 DL 257
>gi|324506922|gb|ADY42942.1| Cleavage and polyadenylation specificity factor subunit 3 [Ascaris
suum]
Length = 706
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 56/135 (41%), Gaps = 5/135 (3%)
Query: 12 FKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLK 71
+ + ++ + FHE K E W Y G +++ ++Y DF+
Sbjct: 141 LEKSMEKIEVIDFHEQK----EVNGIKFWCYVAGHVLGACMFMIEIAGVRVLYTGDFSRL 196
Query: 72 KERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDT 131
++RHL L + P V+I ++ R R++R + + + + G L+
Sbjct: 197 EDRHLCAAELPT-VSPDVLICESTYGTQVHEGREEREKRFTSTVHEIVGRGGRCLIPAFA 255
Query: 132 AGRVLELTHMLEQLW 146
GR EL +L++ W
Sbjct: 256 LGRAQELLLILDEYW 270
>gi|67968624|dbj|BAE00671.1| unnamed protein product [Macaca fascicularis]
Length = 341
Score = 42.0 bits (97), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 21/36 (58%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYGN 36
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 2 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGE 37
>gi|374710344|ref|ZP_09714778.1| beta-lactamase domain-containing protein [Sporolactobacillus
inulinus CASD]
Length = 916
Score = 42.0 bits (97), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G + ++ GEE+++ D + K R + G + RP +I ++ + + R T +
Sbjct: 158 GAVMFTIETGEEKLLVSGDLSFKAGRTIPGAEVPTGSRPDALIIESTYGNREHSDRNTEE 217
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLV 154
+RL N+ + + G L+ GR E+ +L+ D GL+
Sbjct: 218 KRLADNVAEVIAAGGFALIPAFALGRAQEVLLILQDYM---DRGLI 260
>gi|255721479|ref|XP_002545674.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240136163|gb|EER35716.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 870
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLN---------GCVLDRFIRPTVVITDTMSAIY 99
G W I K + ++Y +N K+ LN G +RPT +T T
Sbjct: 158 GTFWLITKR-VDRVIYAPAWNHSKDSFLNSASFISPSTGSPHLSLLRPTAFVTATDMGSA 216
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQ 144
++RT E+ + + TL N G V++ +GR LEL H++++
Sbjct: 217 MSHKKRT--EKFLQLVDATLANGGAVVLPTSLSGRFLELFHLVDE 259
>gi|428308354|ref|YP_007119299.1| beta-lactamase [Crinalium epipsammum PCC 9333]
gi|428249902|gb|AFZ15677.1| beta-lactamase domain protein [Crinalium epipsammum PCC 9333]
Length = 822
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
++ GE ++Y D+N R +G L ++IT++ R+T+++ L+
Sbjct: 399 IRYGERSLLYTGDYNTSNSRTTDGLRLADLPEADMLITESTYGADNHPNRKTQEQELLKA 458
Query: 115 ILQTLRNNGNVLVAVDTAGRVLEL 138
+ + + GNVL+ GR E+
Sbjct: 459 VAEVVSKGGNVLIPAFALGRAQEI 482
>gi|312136618|ref|YP_004003955.1| kh-domain/beta-lactamase-domain-containing protein [Methanothermus
fervidus DSM 2088]
gi|311224337|gb|ADP77193.1| KH-domain/beta-lactamase-domain protein [Methanothermus fervidus
DSM 2088]
Length = 650
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ-QARRRTRDERLMT 113
+ +G+ +VY DF +K R L V D T+V+ T Q R ++RL+
Sbjct: 355 IGDGQHNLVYTGDFKYEKTRLLEPAVTDFPRLETLVMESTYGGKEDIQPSREMAEKRLIK 414
Query: 114 NILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
I T++ G VL+ V GR EL +L++ ++
Sbjct: 415 VIYDTIKRGGKVLIPVFAVGRAQELMVVLDEYIKS 449
>gi|328867689|gb|EGG16071.1| beta-lactamase domain-containing protein [Dictyostelium
fasciculatum]
Length = 786
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I+Y DF+ +++RHL G + V+I ++ + R R+ R T+I + +R
Sbjct: 194 ILYTGDFSRQEDRHLMGAE-SPPVDVDVLIIESTYGVQVHEPRLERERRFTTSIHEIVRR 252
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G L+ V GR EL +L++ W
Sbjct: 253 GGRCLIPVFALGRAQELLLILDEYW 277
>gi|453087099|gb|EMF15140.1| Metallo-hydrolase/oxidoreductase [Mycosphaerella populorum SO2202]
Length = 845
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
+++ D++ + +RHL + R ++ +IT++ I + R+ R+ L+ +I L
Sbjct: 199 VLFTGDYSRENDRHLIPAAVPRNVKVDCLITESTFGISTRTPRQERENALIKSITTILNR 258
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ G EL +LE W
Sbjct: 259 GGRVLMPTTAVGNTQELLLILEDHW 283
>gi|340383473|ref|XP_003390242.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Amphimedon queenslandica]
Length = 726
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 41 AYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ 100
AY G +++ +++Y DF+ ++RHL + P ++I+++ +
Sbjct: 204 AYNAGHVLGAAMFMIEIAGVKVLYTGDFSRVEDRHLMAAEVPNS-SPDILISESTYGTHI 262
Query: 101 QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+R R+ R T I + G+ L+ V GR EL +L++ W
Sbjct: 263 HEKREQREARFTTKIHDIVTRGGHCLIPVFALGRAQELLLILDEYW 308
>gi|333988300|ref|YP_004520907.1| KH-domain/beta-lactamase-domain-containing protein
[Methanobacterium sp. SWAN-1]
gi|333826444|gb|AEG19106.1| KH-domain/beta-lactamase-domain protein [Methanobacterium sp.
SWAN-1]
Length = 634
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ--QARRRTRDERLM 112
+ +G+ VY DF ++ R L V +F R ++ ++ ++ Q R ++ L+
Sbjct: 339 IGDGQHNFVYTGDFKFERSRLLEPAVA-KFPRIESMVMESTYGGHEDVQPTRNDAEKELI 397
Query: 113 TNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
I QTL+ G VL+ V GR E+ +LE+ R+
Sbjct: 398 KTIYQTLQRGGKVLIPVFAVGRAQEIMIVLEEYIRH 433
>gi|68471691|ref|XP_720152.1| hypothetical protein CaO19.7957 [Candida albicans SC5314]
gi|68471954|ref|XP_720020.1| hypothetical protein CaO19.325 [Candida albicans SC5314]
gi|46441870|gb|EAL01164.1| hypothetical protein CaO19.325 [Candida albicans SC5314]
gi|46442007|gb|EAL01300.1| hypothetical protein CaO19.7957 [Candida albicans SC5314]
Length = 931
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR---------FIRPTVVITDTMSAIY 99
G W I K + ++Y +N K+ LN +RPT IT T
Sbjct: 158 GTFWLITKR-IDRVIYAPAWNHSKDSFLNSASFISPSTGNPHLSLLRPTAFITATDMGSV 216
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQ 144
R+RT E+ + + TL N G ++ +GR LEL H++++
Sbjct: 217 MSHRKRT--EKFLQLVDATLANGGAAVLPTSLSGRFLELFHLIDE 259
>gi|342185150|emb|CCC94633.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 308
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 54 IVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPT----VVITDTMSAIYQQARRRTRDE 109
++K +E+ Y DF+LK LN RF+ PT + I T + A R+ +E
Sbjct: 178 LIKYQIDELFYCPDFSLKPSYALN-----RFVPPTTATLLFIDGTPFHLSGNAGRK-YEE 231
Query: 110 RL---MTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+L + +L TLR +VL+ V AGR LE+ ++ L K
Sbjct: 232 QLNVPIREVLNTLRYGKDVLIPVSVAGRGLEVLTIISHLLAEK 274
>gi|238880762|gb|EEQ44400.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 931
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR---------FIRPTVVITDTMSAIY 99
G W I K + ++Y +N K+ LN +RPT IT T
Sbjct: 158 GTFWLITKR-IDRVIYAPAWNHSKDSFLNSASFISPSTGNPHLSLLRPTAFITATDMGSV 216
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQ 144
R+RT E+ + + TL N G ++ +GR LEL H++++
Sbjct: 217 MSHRKRT--EKFLQLVDATLANGGAAVLPTSLSGRFLELFHLIDE 259
>gi|452845681|gb|EME47614.1| hypothetical protein DOTSEDRAFT_146416 [Dothistroma septosporum
NZE10]
Length = 839
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ + +RHL + ++ +IT++ I + R+ R+ +LM ++ L
Sbjct: 200 ILFTGDYSREIDRHLIPATIPPNVKIDCLITESTFGISTREPRQERENQLMKSVTNILNR 259
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLWR 147
G VL+ G EL +LE W+
Sbjct: 260 GGRVLMPTTAVGNTQELLLILEDYWQ 285
>gi|399216074|emb|CCF72762.1| unnamed protein product [Babesia microti strain RI]
Length = 725
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Query: 16 KKQFPMF---PFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKK 72
KK F M FHE +I+ D YG G +V+ G ++Y D++ ++
Sbjct: 135 KKAFEMIRTIDFHE-EIEID---GIKLTCYGAGHVLGACMFMVEIGGIRVLYTGDYSSEQ 190
Query: 73 ERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTA 132
+RH+ + I ++I ++ R R+ RL+ +IL + N G L+ V
Sbjct: 191 DRHVPKAEIPP-IDVHLLICESTYGTRIHDERTQRETRLIRSILNAVDNGGKCLLPVFAL 249
Query: 133 GRVLELTHMLEQLWR 147
GR E+ +LE+ W+
Sbjct: 250 GRAQEILLILEEYWK 264
>gi|336371935|gb|EGO00275.1| hypothetical protein SERLA73DRAFT_73000 [Serpula lacrymans var.
lacrymans S7.3]
gi|336384684|gb|EGO25832.1| hypothetical protein SERLADRAFT_437559 [Serpula lacrymans var.
lacrymans S7.9]
Length = 748
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I+Y D++ +++RHL + +RP V+I ++ + R ++ R + + +R
Sbjct: 171 KILYTGDYSREEDRHLVSAEVPP-VRPDVLIVESTYGVQSLEARDEKEVRFTSLVHSIIR 229
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLWR 147
G+VL+ GR EL +L++ W+
Sbjct: 230 RGGHVLLPTFALGRAQELLLILDEYWK 256
>gi|159488791|ref|XP_001702386.1| subunit of mRNA cleavage and polyadenylation specificity factor
[Chlamydomonas reinhardtii]
gi|158271180|gb|EDO97006.1| subunit of mRNA cleavage and polyadenylation specificity factor
[Chlamydomonas reinhardtii]
Length = 690
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 63 VYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNN 122
+Y D++ +RHL + ++P +VI ++ + R R++ L+ I T+
Sbjct: 162 LYTGDYSRLPDRHLPAADIPP-VKPHIVIVESTYGTSRHLPRLQREQLLLDTIRNTINRG 220
Query: 123 GNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
G V++ V GR EL +L++ W S L
Sbjct: 221 GRVIMPVVALGRAQELLLLLDEYWEAHKSEL 251
>gi|10241720|emb|CAC09445.1| hypothetical protein [Homo sapiens]
Length = 504
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 21/36 (58%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYGN 36
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 165 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGE 200
>gi|328853485|gb|EGG02623.1| hypothetical protein MELLADRAFT_38438 [Melampsora larici-populina
98AG31]
Length = 672
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRF-IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
++Y D++ +++RHL + + +P V+I ++ + R ++ER + L+
Sbjct: 162 VLYTGDYSTEEDRHLIPAKVPNWNEKPDVMICESTYGVQSLEPRPEKEERFTALVQMILK 221
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLWRN 148
G VL+ V GR EL +L++ W N
Sbjct: 222 RGGRVLMPVFALGRAQELLLILDEYWSN 249
>gi|119601887|gb|EAW81481.1| cleavage and polyadenylation specific factor 2, 100kDa, isoform
CRA_b [Homo sapiens]
Length = 496
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 21/36 (58%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYGN 36
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 157 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGE 192
>gi|71027889|ref|XP_763588.1| cleavage and polyadenylation specificity factor protein [Theileria
parva strain Muguga]
gi|68350541|gb|EAN31305.1| cleavage and polyadenylation specificity factor protein, putative
[Theileria parva]
Length = 708
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G +++ G I+Y D++++K+RHL + ++I+++ I R R+
Sbjct: 171 GACMFLIEIGGVRILYTGDYSMEKDRHLPSAEIP-LTNVHLLISESTYGIRVHEERSQRE 229
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R + ++ + NG L+ V GR E+ +L+ W N
Sbjct: 230 MRFLHVVMDIIMRNGKCLLPVFALGRSQEILLILDDYWEN 269
>gi|428304113|ref|YP_007140938.1| beta-lactamase [Crinalium epipsammum PCC 9333]
gi|428245648|gb|AFZ11428.1| beta-lactamase domain protein [Crinalium epipsammum PCC 9333]
Length = 804
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
++ GE ++Y D+N R +G L ++IT++ R+T+++ L+
Sbjct: 381 IRYGERSLLYTGDYNTSNSRTTDGLRLADLPEADMLITESTYGADNHPNRKTQEQELLKA 440
Query: 115 ILQTLRNNGNVLVAVDTAGRVLEL 138
+ + + GNVL+ GR E+
Sbjct: 441 VAEVVSKGGNVLIPAFALGRAQEI 464
>gi|357618299|gb|EHJ71335.1| hypothetical protein KGM_14386 [Danaus plexippus]
Length = 324
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 11/107 (10%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
WAY G +++ +++Y DF+ +++RHL + + P V+IT
Sbjct: 160 WAYNAGHVLGAAMFMIEIAGVKVLYTGDFSRQEDRHLMAAEIPT-VHPDVLIT------- 211
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+R R+ R T + + G L+ V GR EL +L++ W
Sbjct: 212 ---KREERESRFTTLVSDVVGRGGRCLIPVFALGRAQELLLILDEYW 255
>gi|448570321|ref|ZP_21639238.1| mRNA 3-end processing factor [Haloferax lucentense DSM 14919]
gi|448599262|ref|ZP_21655252.1| mRNA 3-end processing factor [Haloferax alexandrinus JCM 10717]
gi|445723239|gb|ELZ74883.1| mRNA 3-end processing factor [Haloferax lucentense DSM 14919]
gi|445737406|gb|ELZ88942.1| mRNA 3-end processing factor [Haloferax alexandrinus JCM 10717]
Length = 410
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 19/136 (13%)
Query: 23 PFHETKIK-------YDEYG------NHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFN 69
PF ET ++ + +YG H Y G +V +GE ++Y DF+
Sbjct: 100 PFTETHVRRMTQQSAHHDYGEPFEAAGHEVTFYNAGHIPGSAHVLVDDGETRLLYTADFH 159
Query: 70 LKKERHLNGCVLDRFIRPT--VVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+R ++G RP VVI ++ + + R T +ER + ++ T+ G V+V
Sbjct: 160 TDDQRLVSGTT----ARPDADVVICESTYSDVEHEDRATVEERFVESVRTTVWEGGTVVV 215
Query: 128 AVDTAGRVLELTHMLE 143
GR EL +L+
Sbjct: 216 PAFAIGRTQELLMVLD 231
>gi|403298151|ref|XP_003939898.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 isoform 2 [Saimiri boliviensis boliviensis]
Length = 648
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 309 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 343
>gi|428774664|ref|YP_007166452.1| beta-lactamase [Cyanobacterium stanieri PCC 7202]
gi|428688943|gb|AFZ48803.1| beta-lactamase domain protein [Cyanobacterium stanieri PCC 7202]
Length = 548
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 61 EIVYGVDFNLKKERHLNGCVLD--RFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQT 118
+I Y DF L + G LD R + P V+I + + RR +++ LMT I +
Sbjct: 158 KIFYTGDFCLSNLQLAEGLSLDNMRGLNPDVLIIEGTYGTARHPHRRQQEKHLMTKIREA 217
Query: 119 LRNNGNVLVAVDTAGRVLELTHML 142
+ +N NV++ V T G EL +L
Sbjct: 218 IASNINVILPVPTFGLGQELLKLL 241
>gi|167526212|ref|XP_001747440.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774275|gb|EDQ87907.1| predicted protein [Monosiga brevicollis MX1]
Length = 668
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+++Y DF+ ++RHL + I+P ++I ++ + R+ R+ R + ++
Sbjct: 185 KLLYTGDFSRDEDRHLMAASIPP-IKPDILIAESTLGDLEHENRQDRERRFTKEVHTIVQ 243
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLWRN 148
G L+ V GR EL +L++ W+
Sbjct: 244 RGGRCLIPVFALGRAQELLLILDEYWQQ 271
>gi|193786016|dbj|BAG50992.1| unnamed protein product [Homo sapiens]
Length = 644
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 305 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 339
>gi|241953057|ref|XP_002419250.1| subunit of mRNA cleavage and polyadenylation factor, putative
[Candida dubliniensis CD36]
gi|223642590|emb|CAX42840.1| subunit of mRNA cleavage and polyadenylation factor, putative
[Candida dubliniensis CD36]
Length = 930
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR---------FIRPTVVITDTMSAIY 99
G W I K + ++Y +N K+ LN +RPT IT T
Sbjct: 158 GTFWLITKR-IDRVIYAPAWNHSKDSFLNSASFISSSTGNPHLSLLRPTAFITATDMGSV 216
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQ 144
R+RT E+ + + TL N G ++ +GR LEL H++++
Sbjct: 217 MSHRKRT--EKFLQLVDATLANGGAAVLPTSLSGRFLELFHLIDE 259
>gi|433417248|ref|ZP_20404656.1| mRNA 3-end processing factor, partial [Haloferax sp. BAB2207]
gi|432200121|gb|ELK56234.1| mRNA 3-end processing factor, partial [Haloferax sp. BAB2207]
Length = 380
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 19/136 (13%)
Query: 23 PFHETKIK-------YDEYG------NHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFN 69
PF ET ++ + +YG H Y G +V +GE ++Y DF+
Sbjct: 70 PFTETHVRRMTQQSAHHDYGEPFEAAGHEVTFYNAGHIPGSAHVLVDDGETRLLYTADFH 129
Query: 70 LKKERHLNGCVLDRFIRPT--VVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+R ++G RP VVI ++ + + R T +ER + ++ T+ G V+V
Sbjct: 130 TDDQRLVSGTT----ARPDADVVICESTYSDVEHEDRATVEERFVESVRTTVWEGGTVVV 185
Query: 128 AVDTAGRVLELTHMLE 143
GR EL +L+
Sbjct: 186 PAFAIGRTQELLMVLD 201
>gi|167394445|ref|XP_001733538.1| cleavage and polyadenylation specificity factor [Entamoeba dispar
SAW760]
gi|165894673|gb|EDR22582.1| cleavage and polyadenylation specificity factor, putative
[Entamoeba dispar SAW760]
Length = 688
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G WKI G +EI+Y V +L + G + +F RP V++TD I Q + +
Sbjct: 148 GTNWKICN-GCDEIIYAVGNDLNNGFVIEGSKIMKFNRPMVLLTD----IGGQGKCQEML 202
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHML 142
+M I + + G L+ V+ GR++E M+
Sbjct: 203 NNVMMEIRKIVLRKGCCLLPVECGGRIMEYMEMV 236
>gi|325186851|emb|CCA21396.1| cleavage and polyadenylation specific factor 3 puta [Albugo
laibachii Nc14]
Length = 759
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G +++ G +++Y D++L+ +RHL L P V+I ++ + R+
Sbjct: 167 GACMYLIEIGGVKVLYTGDYSLENDRHLMAAELPA-CSPDVLIVESTYGVQVHQSVVERE 225
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
R + +R G L+ V GR EL +L++ W+
Sbjct: 226 GRFTGQVESVIRRGGRCLIPVFALGRTQELLLILDEHWQ 264
>gi|330834491|ref|YP_004409219.1| beta-lactamase domain-containing protein [Metallosphaera cuprina
Ar-4]
gi|329566630|gb|AEB94735.1| beta-lactamase domain-containing protein [Metallosphaera cuprina
Ar-4]
Length = 425
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 15/139 (10%)
Query: 20 PMFPFHETKIKYDEYGNHSSWAYGEEI--------------FTGPIWKIVKEGEEEIVYG 65
P P+ ++K N ++ Y EEI G +VK + ++ Y
Sbjct: 107 PKVPYEWVEVK-KSMDNFKTFNYKEEIEIGSFSVTTSSAGHIPGSAITVVKTEKGDVAYT 165
Query: 66 VDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNV 125
D N+ + + LD + V+IT+ + R+ ++ T++++TL G +
Sbjct: 166 GDINVAMAKLVKPAELDIMRKSKVIITEATYGKFNHPARKNVEDEFYTSVIETLEGGGTI 225
Query: 126 LVAVDTAGRVLELTHMLEQ 144
LV + R E+ +L +
Sbjct: 226 LVPAFSLSRSQEILSVLAE 244
>gi|300867486|ref|ZP_07112137.1| hypothetical protein OSCI_3400008 [Oscillatoria sp. PCC 6506]
gi|300334480|emb|CBN57305.1| hypothetical protein OSCI_3400008 [Oscillatoria sp. PCC 6506]
Length = 871
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 58 GEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQ 117
GE ++Y D+N R G L + ++IT++ R+T++ L+ I +
Sbjct: 456 GERSLIYTGDYNTTSSRTTTGLRLADLPQADILITESTYGGDTHPGRKTQETALIDAIAE 515
Query: 118 TLRNNGNVLVAVDTAGRVLEL 138
+++ GNVL+ GR E+
Sbjct: 516 VVKSGGNVLIPAFALGRAQEI 536
>gi|304315326|ref|YP_003850473.1| metal-dependent RNase [Methanothermobacter marburgensis str.
Marburg]
gi|302588785|gb|ADL59160.1| predicted metal-dependent RNase [Methanothermobacter marburgensis
str. Marburg]
Length = 636
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIR-PTVVITDTMSAIYQQARRRTRDER-LM 112
+ +G+ +VY DF ++ R L RF R T+V+ T RTR E+ L+
Sbjct: 340 IGDGQHNMVYTGDFKYEQSRLLEPAA-SRFPRIETLVMESTYGGHEDVQPPRTRAEKELV 398
Query: 113 TNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
I TL+ G +L+ V GR EL +LE+ R
Sbjct: 399 KTIYSTLKRGGKILIPVFAVGRAQELMIVLEEYIR 433
>gi|297265405|ref|XP_002799184.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Macaca mulatta]
Length = 564
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 5/120 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
>gi|354609629|ref|ZP_09027585.1| RNA-metabolising metallo-beta-lactamase [Halobacterium sp. DL1]
gi|353194449|gb|EHB59951.1| RNA-metabolising metallo-beta-lactamase [Halobacterium sp. DL1]
Length = 425
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRP--TVVITDTMSAIYQQARRRT 106
G +V +GE ++Y DFN + +R L+G RP VV+ ++ A + R T
Sbjct: 152 GSAHVLVDDGETSLLYTADFNTEDQRLLSGTT----ARPDADVVLCESTYADVTRPDRAT 207
Query: 107 RDERLMTNILQTLRNNGNVLVAVDTAGRVLE 137
+E ++ QT+ G V+V GR E
Sbjct: 208 VEEGFARSVTQTIHEGGTVVVPAFAIGRTQE 238
>gi|448566938|ref|ZP_21637193.1| mRNA 3-end processing factor [Haloferax prahovense DSM 18310]
gi|445713527|gb|ELZ65304.1| mRNA 3-end processing factor [Haloferax prahovense DSM 18310]
Length = 410
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 15/134 (11%)
Query: 23 PFHETKIK-------YDEYGNHSSWAYGEEIF------TGPIWKIVKEGEEEIVYGVDFN 69
PF ET ++ + +YG + A E F G +V +GE ++Y DF+
Sbjct: 100 PFTETHVRRMTQQSEHHDYGETFAAAGHEVTFYNAGHIPGSAHVLVDDGETRLLYTADFH 159
Query: 70 LKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAV 129
+R ++G DR V+ T S + + R T +ER + ++ T+ G V+V
Sbjct: 160 TDDQRLVSGTT-DRPDADVVICESTYSDV-EHDDRATVEERFVESVRTTVWEGGTVVVPA 217
Query: 130 DTAGRVLELTHMLE 143
GR EL +L+
Sbjct: 218 FAIGRTQELLMVLD 231
>gi|354543512|emb|CCE40231.1| hypothetical protein CPAR2_102690 [Candida parapsilosis]
Length = 938
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 12/105 (11%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLD---------RFIRPTVVITDTMSAIY 99
G W VK + IVY +N K+ LNG +RPT IT T +
Sbjct: 158 GTFWLFVKR-IDRIVYAPSWNHSKDAFLNGANFINSTSGNPHVSLLRPTAFITAT--DLG 214
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQ 144
+ R E+ + + TL N G+ ++ +GR LE+ H++++
Sbjct: 215 SAMSHKKRCEKFLQLVDATLANGGSAIIPTSISGRFLEVFHLVDE 259
>gi|327401049|ref|YP_004341888.1| KH-domain/beta-lactamase-domain-containing protein [Archaeoglobus
veneficus SNP6]
gi|327316557|gb|AEA47173.1| KH-domain/beta-lactamase-domain protein [Archaeoglobus veneficus
SNP6]
Length = 634
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ--QARRRTRDERLM 112
+ EG I + DF ++ R + + F R +I + Q Q RR +E+L+
Sbjct: 338 IGEGLYNIAFTGDFKFERTRLFDRAETN-FPRLEALIMEATYGGSQDFQPTRREAEEKLI 396
Query: 113 TNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+ I +TL+N G VL+ GR E+ LE+ RNK
Sbjct: 397 SIINETLKNGGKVLIPTFAVGRSQEVMIALEEAIRNK 433
>gi|281206064|gb|EFA80253.1| beta-lactamase domain-containing protein [Polysphondylium pallidum
PN500]
Length = 656
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 4/122 (3%)
Query: 28 KIKYDEYGNHSS---WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRF 84
+IKY E H Y G +++ +I+Y DF+ +++RHL G
Sbjct: 42 QIKYHEKLEHKGIKFCCYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMGAETPP- 100
Query: 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQ 144
+ ++I ++ + R R++R ++I + ++ G L+ V GR EL +L++
Sbjct: 101 VNVDILIIESTYGVQVHEPRLEREKRFTSSIHEVVKRGGRCLIPVFALGRAQELLLILDE 160
Query: 145 LW 146
W
Sbjct: 161 YW 162
>gi|389740019|gb|EIM81211.1| mRNA 3'-end-processing protein YSH1 [Stereum hirsutum FP-91666 SS1]
Length = 841
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I+Y D++ +++RHL + +RP V+I ++ + R ++ R + + +R
Sbjct: 171 KILYTGDYSREEDRHLVKAEVPP-VRPDVLIVESTYGVQSLEARDEKELRFTSLVHSIIR 229
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLWR 147
G+VL+ GR EL +L++ W+
Sbjct: 230 RGGHVLLPAFALGRAQELLLILDEYWK 256
>gi|406694795|gb|EKC98117.1| cleavage and polyadenylation specificity factor subunit
[Trichosporon asahii var. asahii CBS 8904]
Length = 958
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVL---------DRFIRPTVVITDTMS 96
+ G ++KI ++Y V N ERHL+G V + RP ++I +
Sbjct: 158 VLGGTLFKIRSPTSGTVLYAVGINHTGERHLDGMVTGQGGLQGYAEDIRRPDLLIVEGGR 217
Query: 97 AIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+ A+RR R+ ++ + TL +VL+ D + R+LEL +L+Q W K
Sbjct: 218 SNAVNAKRRERETAILDLVTATLAGGRSVLMPCDASPRLLELLVLLDQHWSFK 270
>gi|401885166|gb|EJT49292.1| cleavage and polyadenylation specificity factor subunit
[Trichosporon asahii var. asahii CBS 2479]
Length = 958
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVL---------DRFIRPTVVITDTMS 96
+ G ++KI ++Y V N ERHL+G V + RP ++I +
Sbjct: 158 VLGGTLFKIRSPTSGTVLYAVGINHTGERHLDGMVTGQGGLQGYAEDIRRPDLLIVEGGR 217
Query: 97 AIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+ A+RR R+ ++ + TL +VL+ D + R+LEL +L+Q W K
Sbjct: 218 SNAVNAKRRERETAILDLVTATLAGGRSVLMPCDASPRLLELLVLLDQHWSFK 270
>gi|448544804|ref|ZP_21625694.1| mRNA 3-end processing factor [Haloferax sp. ATCC BAA-646]
gi|448547226|ref|ZP_21626737.1| mRNA 3-end processing factor [Haloferax sp. ATCC BAA-645]
gi|448556084|ref|ZP_21631862.1| mRNA 3-end processing factor [Haloferax sp. ATCC BAA-644]
gi|445704915|gb|ELZ56821.1| mRNA 3-end processing factor [Haloferax sp. ATCC BAA-646]
gi|445716708|gb|ELZ68448.1| mRNA 3-end processing factor [Haloferax sp. ATCC BAA-645]
gi|445717038|gb|ELZ68763.1| mRNA 3-end processing factor [Haloferax sp. ATCC BAA-644]
Length = 410
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 19/136 (13%)
Query: 23 PFHETKIK-------YDEYG------NHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFN 69
PF ET ++ + +YG H Y G +V +GE ++Y DF+
Sbjct: 100 PFTETHVRRMTQQSAHHDYGEPFEAAGHEVTFYNAGHIPGSAHVLVDDGETRLLYTADFH 159
Query: 70 LKKERHLNGCVLDRFIRPT--VVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+R ++G RP VV+ ++ + + R T +ER + ++ T+ G V+V
Sbjct: 160 TDDQRLVSGTT----ARPDADVVVCESTYSDVEHEDRATVEERFVESVRTTVWEGGTVVV 215
Query: 128 AVDTAGRVLELTHMLE 143
GR EL +L+
Sbjct: 216 PAFAIGRTQELLMVLD 231
>gi|159487337|ref|XP_001701679.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280898|gb|EDP06654.1| predicted protein [Chlamydomonas reinhardtii]
Length = 460
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 15/113 (13%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNG------------CVLDRFIRPTVVITDTMS 96
G + G +Y DFN +RHL C++ P V+I++
Sbjct: 156 GAAMVTMTAGHLTALYTGDFNSAPDRHLGSAELAAGGAGPAGCLMRE---PDVLISEATY 212
Query: 97 AIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
A + +R R+ L+ + T+ G VL+ GR EL +L WR K
Sbjct: 213 AASLRDSKRGRERDLLQAVEDTVAAGGKVLIPTFAMGRAQELLMLLADCWRRK 265
>gi|429963183|gb|ELA42727.1| hypothetical protein VICG_00042 [Vittaforma corneae ATCC 50505]
Length = 642
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 61 EIVYGVDFNLKKERHLN-----GCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNI 115
+I+Y DF+ +++RHL GC LD +IT++ + R R+ R + +
Sbjct: 168 KILYTGDFSREEDRHLKAAESPGCCLD------ALITESTYGVQCHLPRYEREARFTSIV 221
Query: 116 LQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ G L+ V GR EL +LE+ W
Sbjct: 222 SHVVLRGGRCLLPVFALGRAQELLLILEEHW 252
>gi|303391080|ref|XP_003073770.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon intestinalis ATCC 50506]
gi|303302918|gb|ADM12410.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon intestinalis ATCC 50506]
Length = 696
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLN-----GCVLDRFIRPTVVITDTMSAIYQQAR 103
G +V+ + +I+Y DF+ +++RHL GC +D +IT++ +
Sbjct: 156 GAAMFLVEIEKSKILYTGDFSREEDRHLKAAESPGCKID------ALITESTYGVQCHLP 209
Query: 104 RRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDS 151
R R+ R + + ++ G L+ V GR EL +LE+ W + S
Sbjct: 210 RSEREGRFTSIVQNVVQRGGRCLLPVFALGRAQELLLILEEHWSSNAS 257
>gi|390602470|gb|EIN11863.1| Metallo-hydrolase/oxidoreductase, partial [Punctularia
strigosozonata HHB-11173 SS5]
Length = 721
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQT-L 119
+I+Y D++ +++RHL L IRP V+I ++ + Q R E TNI+ + +
Sbjct: 171 KILYTGDYSREEDRHLVKAELPP-IRPDVLIAESTWGV-QSGDSREEKEARFTNIVHSII 228
Query: 120 RNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ G+VL+ GR EL +L++ W
Sbjct: 229 KRGGHVLMPTFAIGRAQELLLILDEYW 255
>gi|170587204|ref|XP_001898368.1| cpsf3-prov protein [Brugia malayi]
gi|158594194|gb|EDP32780.1| cpsf3-prov protein, putative [Brugia malayi]
Length = 700
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 58/141 (41%), Gaps = 5/141 (3%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
N + + ++ + FHE K E W + G +++ I+Y D
Sbjct: 128 NEEDLEKSMEKIEVIDFHEQK----EVNGIKFWCHVAGHVLGACMFMIEIAGVRILYTGD 183
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
F+ ++RHL L + P V+I ++ R R++R + + + + G L+
Sbjct: 184 FSRLEDRHLCAAELPT-VSPDVLICESTYGTQVHESRDEREKRFTSIVHEIVGRGGRCLI 242
Query: 128 AVDTAGRVLELTHMLEQLWRN 148
GR EL +L++ W +
Sbjct: 243 PAFALGRAQELLLILDEYWES 263
>gi|448584874|ref|ZP_21647617.1| mRNA 3-end processing factor [Haloferax gibbonsii ATCC 33959]
gi|445727728|gb|ELZ79338.1| mRNA 3-end processing factor [Haloferax gibbonsii ATCC 33959]
Length = 410
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 15/134 (11%)
Query: 23 PFHETKIK-------YDEYG------NHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFN 69
PF ET ++ + +YG H Y G +V +GE ++Y DF+
Sbjct: 100 PFTETHVRRMTQQSEHHDYGEPFEAAGHEVTFYNAGHIPGSAHVLVDDGETRLLYSADFH 159
Query: 70 LKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAV 129
+R ++G DR V+ T S + + R T +ER + ++ T+ G V+V
Sbjct: 160 TDDQRLVSGTT-DRPDADVVICESTYSDV-EHDDRATVEERFVESVRTTVWEGGTVVVPA 217
Query: 130 DTAGRVLELTHMLE 143
GR E+ +L+
Sbjct: 218 FAIGRTQEILMVLD 231
>gi|9280039|dbj|BAB01576.1| unnamed protein product [Macaca fascicularis]
Length = 328
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQ 144
RP ++IT++ A + +R R+ + + +T+ G VL+ V GR EL +LE
Sbjct: 131 CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLET 190
Query: 145 LW 146
W
Sbjct: 191 FW 192
>gi|344232758|gb|EGV64631.1| Metallo-hydrolase/oxidoreductase [Candida tenuis ATCC 10573]
Length = 782
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
Query: 41 AYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ 100
AY G +++ G + ++ D++ ++ RHL + ++P ++IT++
Sbjct: 162 AYHAGHVLGACLYLIEIGGLKALFTGDYSREENRHLPVAEVPS-VKPDILITESTFGTAT 220
Query: 101 QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW-RNKD 150
R ++ R+ I TL G VL+ V G EL +LE+ W +NKD
Sbjct: 221 HEPRMEKENRMTRIIHSTLSKGGRVLMPVFALGTAQELLLILEEYWSQNKD 271
>gi|428307781|ref|YP_007144606.1| beta-lactamase [Crinalium epipsammum PCC 9333]
gi|428249316|gb|AFZ15096.1| beta-lactamase domain protein [Crinalium epipsammum PCC 9333]
Length = 894
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
++ GE ++Y D+N R +G L + ++IT++ R+ ++ L+
Sbjct: 462 IRYGERSLLYTGDYNTTNSRTTDGLRLADLPQADILITESTYGADTHPSRKAQETELLQA 521
Query: 115 ILQTLRNNGNVLVAVDTAGRVLEL 138
+ + + + GNVL+ GR E+
Sbjct: 522 VAEVVSSGGNVLIPAFALGRAQEI 545
>gi|407847992|gb|EKG03521.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma cruzi]
Length = 883
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 54 IVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPT----VVITDTMSAIYQQARRRTRDE 109
++K +E+ Y DF+LK L RF+ PT + I + + R+ ++
Sbjct: 259 LIKYKIDELFYCPDFSLKPSY-----ALKRFLPPTTSTLLFIDGSPFHLSGNTGRKYEEQ 313
Query: 110 --RLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
L+ IL TLRN +VL+ V AGR LE+ ++ L K
Sbjct: 314 LNALIREILGTLRNGKDVLIPVSVAGRGLEILTIVTHLLTEK 355
>gi|300121617|emb|CBK22135.2| unnamed protein product [Blastocystis hominis]
Length = 545
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 51 IWKIVKEGEEEIVYGVDFNLKKERHLNGCVLD-RFIRPTVVITDTMSAIYQQARRRTRDE 109
+W+I G I+Y DF+ + + L RF+RP + M Y ++ ++
Sbjct: 161 MWEIEAYGRS-ILYTGDFSDEPGGFIPSYQLPARFLRPGNLDMLIMECTYGNTEFKSYED 219
Query: 110 R---LMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD 150
R L+ ++L T++N G VL+ G EL M LW +K+
Sbjct: 220 RKNTLLDSVLSTIQNRGKVLIPCYGIGHTQELLAMFLDLWNSKN 263
>gi|358058074|dbj|GAA96053.1| hypothetical protein E5Q_02714 [Mixia osmundae IAM 14324]
Length = 896
Score = 40.4 bits (93), Expect = 0.27, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 62 IVYGVDFNLKKERHLNGC---VLDRFIRPTV--VITDTMSAIYQQARRRTRDERLMTNIL 116
I+Y FN KE+HL+ VL + +IT A + + R+ ++ I
Sbjct: 192 ILYAPVFNHIKEKHLDSAASIVLGGAETKGLGTLITSVEKAQSKGQKTVARNSAMLQTIT 251
Query: 117 QTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
TL+ +VL+ VD AGR+ EL +L+Q W
Sbjct: 252 STLQAGRSVLMPVDAAGRIAELLVLLDQHW 281
>gi|328854195|gb|EGG03329.1| hypothetical protein MELLADRAFT_90299 [Melampsora larici-populina
98AG31]
Length = 695
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 10/71 (14%)
Query: 86 RPTVVITDTMSAIYQQARRRTRDERL-MT---------NILQTLRNNGNVLVAVDTAGRV 135
RP V++ T ++ + R++ RD+ L MT I TLR++ +V + D + R+
Sbjct: 9 RPLVMMIGTERSLTKSIRKKDRDQVLFMTYITSFDLTDTIASTLRSSHSVFIPTDASARL 68
Query: 136 LELTHMLEQLW 146
+EL ML+ LW
Sbjct: 69 IELIIMLDTLW 79
>gi|367005895|ref|XP_003687679.1| hypothetical protein TPHA_0K01110 [Tetrapisispora phaffii CBS 4417]
gi|357525984|emb|CCE65245.1| hypothetical protein TPHA_0K01110 [Tetrapisispora phaffii CBS 4417]
Length = 790
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 9/125 (7%)
Query: 29 IKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPT 88
IK+ + H+ G +F ++ G +++ D++ + +RHLN +
Sbjct: 151 IKFTAF--HAGHVLGAAMFQ------IELGSLRVLFTGDYSRELDRHLNSAEIPPLASDV 202
Query: 89 VVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
+++ T + R +R+++L I T+ G VL+ V GR EL +L++ W +
Sbjct: 203 LIVESTFGTATHEPRL-SREKKLTQLIHSTVTKGGRVLMPVFALGRAQELMLILDEYWSH 261
Query: 149 KDSGL 153
+ L
Sbjct: 262 NEEEL 266
>gi|392593709|gb|EIW83034.1| Metallo-hydrolase oxidoreductase [Coniophora puteana RWD-64-598
SS2]
Length = 770
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I+Y D++ +++RHL + +RP V+I ++ + R ++ R + +R
Sbjct: 171 KILYTGDYSREEDRHLVKAEVPP-VRPDVLIVESTYGVQSLECREDKEARFTGLVHSIIR 229
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLWR 147
G+VL+ GR EL +L++ W+
Sbjct: 230 RGGHVLLPAFALGRAQELLLILDEYWK 256
>gi|330842661|ref|XP_003293292.1| hypothetical protein DICPUDRAFT_158104 [Dictyostelium purpureum]
gi|325076396|gb|EGC30185.1| hypothetical protein DICPUDRAFT_158104 [Dictyostelium purpureum]
Length = 789
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I+Y DF+ +++RHL G ++ V+I ++ + R R++R T++ +
Sbjct: 195 KILYTGDFSRQEDRHLMGAETPP-VKVDVLIIESTYGVQVHEPRLEREKRFTTSVHDVVS 253
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
G L+ V GR EL +L++ W
Sbjct: 254 RGGRCLIPVFALGRAQELLLILDEYW 279
>gi|320163324|gb|EFW40223.1| CPSF3 protein [Capsaspora owczarzaki ATCC 30864]
Length = 802
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V+ +++Y D++ ++RHL + I P V+ ++ +
Sbjct: 178 WCYNAGHVLGACMFMVEIAGVKLLYTGDYSRHEDRHLMPAEIPT-IAPDVLCVESTYGVR 236
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDS 151
R R+ R ++ + G L+ V GR EL +L++ W +K +
Sbjct: 237 VHEPRVEREGRFTKDVHDIVMRGGKCLLPVFALGRAQELLLILDEFWESKPA 288
>gi|448681732|ref|ZP_21691823.1| mRNA 3'-end processing factor-like protein [Haloarcula
argentinensis DSM 12282]
gi|445767602|gb|EMA18705.1| mRNA 3'-end processing factor-like protein [Haloarcula
argentinensis DSM 12282]
Length = 640
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+ EG + + D + K R L+G V D T+V+ T ++ ER++ +
Sbjct: 342 IGEGRYNVAFSGDIHYKDTRLLDGAVNDFPRVETLVLESTYGGKNDYQTDQSDSERVLKD 401
Query: 115 IL-QTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD 150
++ +T N+G VL+ GR EL +LE+ R D
Sbjct: 402 VINETYENDGKVLIPAFAVGRSQELMLVLEEAMRKGD 438
>gi|124505029|ref|XP_001351256.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium falciparum 3D7]
gi|3758842|emb|CAB11127.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium falciparum 3D7]
Length = 1017
Score = 40.0 bits (92), Expect = 0.32, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
++Y D+N ++HL + + P + I+++ A Y + ++ + L + + +
Sbjct: 309 VIYTGDYNTIPDKHLGSANIPS-LNPEIFISESTYATYVRPTKKASELELCNLVHECVHK 367
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLWR 147
G VL+ V GR EL+ +L+ W+
Sbjct: 368 GGKVLIPVFAIGRAQELSILLDDYWK 393
>gi|448606403|ref|ZP_21658917.1| mRNA 3-end processing factor [Haloferax sulfurifontis ATCC BAA-897]
gi|445738971|gb|ELZ90481.1| mRNA 3-end processing factor [Haloferax sulfurifontis ATCC BAA-897]
Length = 410
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 15/134 (11%)
Query: 23 PFHETKIK-------YDEYG------NHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFN 69
PF ET ++ + +YG H Y G +V +GE ++Y DF+
Sbjct: 100 PFTETHVRRMTQQSAHHDYGEAFEAAGHEVTFYNAGHIPGSAHVLVDDGETRLLYTADFH 159
Query: 70 LKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAV 129
+R ++G DR V+ T S + + R T +ER + ++ T+ G V+V
Sbjct: 160 TDDQRLVSGTT-DRPDADVVICESTYSDV-EHDDRATVEERFVESVRTTVWEGGTVVVPA 217
Query: 130 DTAGRVLELTHMLE 143
GR E+ +L+
Sbjct: 218 FAIGRTQEILMVLD 231
>gi|154422115|ref|XP_001584070.1| RNA-metabolising metallo-beta-lactamase family protein [Trichomonas
vaginalis G3]
gi|121918315|gb|EAY23084.1| RNA-metabolising metallo-beta-lactamase family protein [Trichomonas
vaginalis G3]
Length = 588
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 63 VYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNN 122
+Y DF+ + HL+G + R P ++IT++ + R+ + + Q +
Sbjct: 173 IYTGDFSAIADHHLSGHAVPRLF-PDLLITESTYGNQVRDSIAKRERSFVQMVHQVVGEG 231
Query: 123 GNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR+ E+ MLE W
Sbjct: 232 GKVLIPVFAVGRLQEICLMLEDYW 255
>gi|242220452|ref|XP_002475992.1| predicted protein [Postia placenta Mad-698-R]
gi|220724781|gb|EED78801.1| predicted protein [Postia placenta Mad-698-R]
Length = 825
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I+Y D++ +++RHL + IRP V+I ++ + R ++ R + +R
Sbjct: 162 KILYTGDYSREEDRHLVKAEVPP-IRPDVLIIESTYGVQTLEGREEKELRFTNLVHSIIR 220
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLWR 147
G+VL+ GR EL +L++ W+
Sbjct: 221 RGGHVLLPTFALGRAQELLLILDEYWK 247
>gi|392512873|emb|CAD25809.2| similarity to HYPOTHETICAL PROTEIN Y162_METJA [Encephalitozoon
cuniculi GB-M1]
Length = 643
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLN-----GCVLDRFIRPTVVITDTMSAIYQQAR 103
G +V+ + +I+Y DF+ +++RHL GC +D +IT++ +
Sbjct: 156 GAAMFLVEIEKSKILYTGDFSREEDRHLKAAESPGCKID------ALITESTYGVQCHLP 209
Query: 104 RRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDS 151
R R+ R + + ++ G L+ V GR EL +LE+ W + S
Sbjct: 210 RAEREGRFTSIVQNVVQRGGRCLLPVFALGRAQELLLILEEHWGSNTS 257
>gi|308160032|gb|EFO62542.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia lamblia P15]
Length = 620
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 53/141 (37%), Gaps = 10/141 (7%)
Query: 7 ANSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGV 66
+N+ F + P ET I + G+ I I I G +IVY
Sbjct: 154 SNTNFVADCQPSRTGEPVPETVINFSNAGH---------IIGAVITTITVAGYAKIVYTG 204
Query: 67 DFNLKKERHLNGCVLDRF-IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNV 125
D+N L G L I ++IT+T + RD + ++ +TLR NG V
Sbjct: 205 DYNTTARTTLPGATLPSCAIGADILITETTYCNISRRPSLYRDSLQLADVAETLRQNGRV 264
Query: 126 LVAVDTAGRVLELTHMLEQLW 146
L+ G ++ + W
Sbjct: 265 LLPTSAMGLCQDIIVKVWSFW 285
>gi|19074699|ref|NP_586205.1| similarity to HYPOTHETICAL PROTEIN Y162_METJA [Encephalitozoon
cuniculi GB-M1]
Length = 730
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLN-----GCVLDRFIRPTVVITDTMSAIYQQAR 103
G +V+ + +I+Y DF+ +++RHL GC +D +IT++ +
Sbjct: 243 GAAMFLVEIEKSKILYTGDFSREEDRHLKAAESPGCKID------ALITESTYGVQCHLP 296
Query: 104 RRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDS 151
R R+ R + + ++ G L+ V GR EL +LE+ W + S
Sbjct: 297 RAEREGRFTSIVQNVVQRGGRCLLPVFALGRAQELLLILEEHWGSNTS 344
>gi|332796323|ref|YP_004457823.1| beta-lactamase domain-containing protein [Acidianus hospitalis W1]
gi|332694058|gb|AEE93525.1| beta-lactamase domain protein [Acidianus hospitalis W1]
Length = 638
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+ EG IVY DF K R L+ F + +I +T +Q R +++L+
Sbjct: 338 IGEGTHNIVYTGDFKYAKTRLLDRAT-SEFPKVDTLIMETTYGAQEQTNREESEKQLIDI 396
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
I T+ G VL+ V GR E+ ++ +NK
Sbjct: 397 INNTINRGGKVLIPVLAVGRGQEMMLVINNALKNK 431
>gi|387219447|gb|AFJ69432.1| cleavage and polyadenylation specificity factor subunit 2, partial
[Nannochloropsis gaditana CCMP526]
Length = 217
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%)
Query: 82 DRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHM 141
D+ RP + ITD + R + + TLR G+VL+ V+T+GR EL
Sbjct: 5 DKEQRPCLFITDARPSPNLSTDERKVETEFLAAATGTLRKGGHVLIPVETSGRAQELLLA 64
Query: 142 LEQLWRN 148
L WR+
Sbjct: 65 LNGHWRS 71
>gi|402594378|gb|EJW88304.1| cleavage and polyadenylation specificity factor subunit 3
[Wuchereria bancrofti]
Length = 694
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 5/142 (3%)
Query: 7 ANSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGV 66
+++R + + + FHE K E W + G +++ I+Y
Sbjct: 121 SDNRMLYNEEDLEKVIDFHEQK----EVNGIKFWCHVAGHVLGACMFMIEIAGVRILYTG 176
Query: 67 DFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVL 126
DF+ ++RHL L + P V+I ++ R R++R + + + + G L
Sbjct: 177 DFSRLEDRHLCAAELPT-VSPDVLICESTYGTQVHESRDEREKRFTSIVHEIVGRGGRCL 235
Query: 127 VAVDTAGRVLELTHMLEQLWRN 148
+ GR EL +L++ W +
Sbjct: 236 IPAFALGRAQELLLILDEYWES 257
>gi|395332776|gb|EJF65154.1| Metallo-hydrolase/oxidoreductase [Dichomitus squalens LYAD-421 SS1]
Length = 809
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I+Y D++ +++RHL + I P V+I ++ + R ++ R + +R
Sbjct: 171 KILYTGDYSREEDRHLVKAEIPP-IHPDVLIVESTYGVQSHEPRDDKEARFTNLVHSIIR 229
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
G+VL+ GR EL +L++ W
Sbjct: 230 RGGHVLLPTFALGRAQELLLILDEYW 255
>gi|452825586|gb|EME32582.1| RNA-metabolising metallo-beta-lactamase family protein [Galdieria
sulphuraria]
Length = 370
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 3/110 (2%)
Query: 39 SWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRF-IRPTVVITDTMSA 97
SW G + ++ IV + I+Y DF HL +D P V++++ A
Sbjct: 125 SWMAGH-VLGAYMFSIVVDNHR-ILYTGDFTSCPTFHLPPARVDDIPYPPDVILSEATYA 182
Query: 98 IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
+ R + N+L L + G VLV V GR EL +LE W+
Sbjct: 183 TSFKDGRLNNQVEFIQNVLDCLLDGGKVLVPVFAIGRAQELLLLLEMYWQ 232
>gi|448620398|ref|ZP_21667746.1| mRNA 3-end processing factor [Haloferax denitrificans ATCC 35960]
gi|445757186|gb|EMA08542.1| mRNA 3-end processing factor [Haloferax denitrificans ATCC 35960]
Length = 410
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 15/134 (11%)
Query: 23 PFHETKIK-------YDEYG------NHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFN 69
PF ET ++ + +YG H Y G +V +GE ++Y DF+
Sbjct: 100 PFTETHVRRMTQQSAHHDYGEAFEAAGHEVTFYNAGHIPGSAHVLVDDGETRLLYTADFH 159
Query: 70 LKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAV 129
+R ++G DR V+ T S + + R T +ER + ++ T+ G V+V
Sbjct: 160 TDDQRLVSGTT-DRPDADVVICESTYSDV-EHDDRATVEERFVESVRTTVWEGGTVVVPA 217
Query: 130 DTAGRVLELTHMLE 143
GR E+ +L+
Sbjct: 218 FAIGRTQEVLMVLD 231
>gi|440795785|gb|ELR16901.1| putative cleavage and polyadenylation specificity factor, putative
[Acanthamoeba castellanii str. Neff]
Length = 589
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +++ I+Y DF+ +++RHL + V++ T
Sbjct: 32 WCYNAGHVLGAAMFMIEIAGVRILYTGDFSRQEDRHLMAAETPAYTADIVIVESTYGVQI 91
Query: 100 QQAR--RRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ R R TR +L+ I+ R G L+ V GR EL +L++ W
Sbjct: 92 HEPRIERETRFTKLVHTIV---RRGGRCLLPVFALGRAQELLLILDEYW 137
>gi|409044817|gb|EKM54298.1| hypothetical protein PHACADRAFT_146128 [Phanerochaete carnosa
HHB-10118-sp]
Length = 869
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I+Y D++ +++RHL + IRP V+I ++ + R ++ R + +R
Sbjct: 172 KILYTGDYSREEDRHLVKAEVPP-IRPDVLIVESTFGVQTLEGREEKELRFTNLVHNIIR 230
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLWR 147
G+VL+ GR EL +L++ W+
Sbjct: 231 RGGHVLLPTFALGRAQELLLILDEYWK 257
>gi|354543719|emb|CCE40441.1| hypothetical protein CPAR2_104770 [Candida parapsilosis]
Length = 776
Score = 39.7 bits (91), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G +++ G +I++ D++ ++ RHL + ++P V+IT++ R +
Sbjct: 177 GACMYLIEIGGLKILFTGDYSREENRHLPSAEVPP-VKPDVLITESTFGTGTLEPRAELE 235
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW-RNKD 150
+L +I TL G VL+ V G EL +L++ W +N+D
Sbjct: 236 TKLTNHIHATLTKGGRVLLPVFALGNAQELLLILDEYWEKNED 278
>gi|254582142|ref|XP_002497056.1| ZYRO0D14410p [Zygosaccharomyces rouxii]
gi|238939948|emb|CAR28123.1| ZYRO0D14410p [Zygosaccharomyces rouxii]
Length = 772
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Query: 29 IKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPT 88
IK+ Y H+ G +F I + +++ D++ + +RHLN + F
Sbjct: 152 IKFTAY--HAGHVLGAAMFQIEIAGL------RVLFTGDYSRELDRHLNSAEIPPFPSDV 203
Query: 89 VVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+++ T + R R+ +L I T+ G VL+ V GR EL +L++ W
Sbjct: 204 LIVESTFGTATHEPRI-NRERKLTQLIHSTVTKGGRVLLPVFALGRAQELMLILDEYW 260
>gi|392569726|gb|EIW62899.1| mRNA 3'-end-processing protein YSH1 [Trametes versicolor FP-101664
SS1]
Length = 805
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I+Y D++ +++RHL + + P V+I ++ + R ++ R + +R
Sbjct: 171 KILYTGDYSREEDRHLVKAEIPP-VHPDVLIVESTYGVQSHEPREDKETRFTNLVHSIIR 229
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
G+VL+ GR EL +L++ W
Sbjct: 230 RGGHVLLPTFALGRAQELLLILDEYW 255
>gi|348688343|gb|EGZ28157.1| hypothetical protein PHYSODRAFT_309075 [Phytophthora sojae]
Length = 669
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 58 GEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQ 117
G +++ DFNL R L + R + P V+IT + A+ + + L+ IL+
Sbjct: 200 GVSTVMFANDFNLTGGRVLLPAQIPR-LEPNVLITSSSFAVTVSETQNAMERELVKVILE 258
Query: 118 TLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
+ +NG V++ V G EL +L + W+
Sbjct: 259 CISSNGKVVIPVYRLGYFHELITILLEHWQQ 289
>gi|365990355|ref|XP_003672007.1| hypothetical protein NDAI_0I01950 [Naumovozyma dairenensis CBS 421]
gi|343770781|emb|CCD26764.1| hypothetical protein NDAI_0I01950 [Naumovozyma dairenensis CBS 421]
Length = 757
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
+++ D++ +K+RHLN + +++ T + R R+++L I T+ +
Sbjct: 143 VLFTGDYSREKDRHLNSAEVPPLSSNILIVESTFGTATHEPRLN-REKKLTQMIHHTVSH 201
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 202 GGRVLMPVFALGRAQELMLILDEYW 226
>gi|159112921|ref|XP_001706688.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia lamblia ATCC 50803]
gi|157434787|gb|EDO79014.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia lamblia ATCC 50803]
Length = 620
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 48/125 (38%), Gaps = 10/125 (8%)
Query: 23 PFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLD 82
P ET I + G+ I I I G +IVY D+N L G L
Sbjct: 170 PVPETIINFSNAGH---------IIGAVITTITVAGCAKIVYTGDYNTTARTTLPGATLP 220
Query: 83 RF-IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHM 141
I ++IT+T + RD + ++ +TLR NG VL+ G ++
Sbjct: 221 NCAIGADILITETTYCNISRRPSLYRDSLQLADVAETLRQNGRVLLPTSAMGLCQDIIVK 280
Query: 142 LEQLW 146
+ W
Sbjct: 281 VWSFW 285
>gi|403419016|emb|CCM05716.1| predicted protein [Fibroporia radiculosa]
Length = 828
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I+Y D++ +++ HL + F RP V+I ++ + R +++R + +R
Sbjct: 171 KILYTGDYSREEDCHLVKAEVPPF-RPDVLIIESTYGVQTLECREDKEQRFTNLVHSIIR 229
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLWR 147
G+VL+ GR EL +L++ W+
Sbjct: 230 RGGHVLLPTFALGRAQELLLILDEYWK 256
>gi|410074967|ref|XP_003955066.1| hypothetical protein KAFR_0A04950 [Kazachstania africana CBS 2517]
gi|372461648|emb|CCF55931.1| hypothetical protein KAFR_0A04950 [Kazachstania africana CBS 2517]
Length = 769
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 29 IKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPT 88
IK+ Y H+ G +F I + +++ D++ + +RHLN +
Sbjct: 151 IKFTAY--HAGHVLGAAMFQIEIAGL------RVLFTGDYSRETDRHLNSAEVPPLSSDI 202
Query: 89 VVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+++ T + R +R+++L I T+ G VL+ V GR EL +L++ W
Sbjct: 203 LIVESTFGTATHEPRL-SREKKLTQLIHTTVSQGGRVLMPVFALGRAQELMLILDEFW 259
>gi|146296048|ref|YP_001179819.1| beta-lactamase domain-containing protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409624|gb|ABP66628.1| beta-lactamase domain protein [Caldicellulosiruptor saccharolyticus
DSM 8903]
Length = 821
Score = 39.3 bits (90), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
++ E ++Y DF+ K+ ++ + + IRP VVI ++ R +ERL +
Sbjct: 155 IQTQEGSVLYTGDFSTDKQLTVDKASIPK-IRPDVVICESTYGDRLHTNRNYEEERLFNS 213
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
I + + G VL+ GR E+ +L + K
Sbjct: 214 IYEFISKGGKVLIPAFAIGRAQEIILILRNYMKKK 248
>gi|448593539|ref|ZP_21652494.1| mRNA 3'-end processing factor [Haloferax elongans ATCC BAA-1513]
gi|445729320|gb|ELZ80916.1| mRNA 3'-end processing factor [Haloferax elongans ATCC BAA-1513]
Length = 410
Score = 39.3 bits (90), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
Query: 33 EYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVIT 92
E +H Y G +V +GE ++Y DF+ +R + G DR V+
Sbjct: 123 EAADHEVTFYNAGHIPGSAHVLVDDGETRLLYTADFHTDDQRLVAGTT-DRPDADVVICE 181
Query: 93 DTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
T S + + R T +ER + ++ T+ G V+V GR E+ +L+
Sbjct: 182 STYSDV-EHDDRATVEERFVESVRTTIWEGGTVVVPAFAIGRTQEILMVLD 231
>gi|448516292|ref|XP_003867539.1| mRNA cleavage and polyadenlylation factor [Candida orthopsilosis Co
90-125]
gi|380351878|emb|CCG22102.1| mRNA cleavage and polyadenlylation factor [Candida orthopsilosis]
Length = 936
Score = 39.3 bits (90), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLN---------GCVLDRFIRPTVVITDTMSAIY 99
G W +VK+ + I+Y +N K+ LN G +RPT IT T +
Sbjct: 158 GTFWLLVKK-IDRIIYAPSWNHSKDAFLNSANFINSTSGNPHLALLRPTAFITAT--DLG 214
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQ 144
+ R E+ + + TL N G+ ++ +GR LE+ H++++
Sbjct: 215 SAMPHKKRCEKFLQLVDATLANGGSAIIPTSISGRFLEVFHLVDE 259
>gi|428304260|ref|YP_007141085.1| beta-lactamase [Crinalium epipsammum PCC 9333]
gi|428245795|gb|AFZ11575.1| beta-lactamase domain protein [Crinalium epipsammum PCC 9333]
Length = 782
Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 40/84 (47%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
++ G+ ++Y D+N R +G L + ++IT++ R+ ++ L+
Sbjct: 348 IRYGDRSLLYTGDYNTTNSRTTDGLRLADLPQADILITESTYGADTHPSRKAQETELLQA 407
Query: 115 ILQTLRNNGNVLVAVDTAGRVLEL 138
+ + + + GNVL+ GR E+
Sbjct: 408 VAEVVSHGGNVLIPAFALGRAQEI 431
>gi|401428833|ref|XP_003878899.1| cleavage and polyadenylation specificity factor,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
gi|322495148|emb|CBZ30452.1| cleavage and polyadenylation specificity factor,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
Length = 756
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 63 VYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNN 122
+Y DF+ +RHL G + + P ++I ++ + I + R R++ ++ + +R
Sbjct: 187 LYTGDFSRVPDRHLLGAEVPPY-SPDILIAESTNGIRELESREEREQLFTGSVHEVVRRG 245
Query: 123 GNVLVAVDTAGRVLELTHMLEQLW 146
G LV V GR EL +LE+ W
Sbjct: 246 GRCLVPVFALGRAQELLLILEEFW 269
>gi|73670083|ref|YP_306098.1| mRNA 3-end processing factor [Methanosarcina barkeri str. Fusaro]
gi|72397245|gb|AAZ71518.1| mRNA 3-end processing factor [Methanosarcina barkeri str. Fusaro]
Length = 397
Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 57 EGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNIL 116
E E + Y DFNLK+ R + G F +I ++ + R+ +ER + ++L
Sbjct: 132 ESGESLFYTGDFNLKETRLVPGAA--EFPETDTLILESTYFGEEHIPRKETEERFIESVL 189
Query: 117 QTLRNNGNVLVAVDTAGRVLELTHMLE 143
TL G L+ GR E+ +L+
Sbjct: 190 STLDIGGTALIPAFAIGRTQEILMLLD 216
>gi|301117336|ref|XP_002906396.1| integrator complex subunit, putative [Phytophthora infestans T30-4]
gi|262107745|gb|EEY65797.1| integrator complex subunit, putative [Phytophthora infestans T30-4]
Length = 669
Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 58 GEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQ 117
G +++ DFNL R L + R + PT +IT + A+ + + L+ IL+
Sbjct: 200 GATTVLFANDFNLTGGRVLLPAQIPR-LEPTAMITRSSFAVTVSETQSAMERELVKAILE 258
Query: 118 TLRNNGNVLVAVDTAGRVLELTHMLEQLWRN-KDS 151
+ +NG V++ V G EL ++ + W+ KD+
Sbjct: 259 CIASNGKVVIPVYRLGYFHELITIILEHWQQIKDA 293
>gi|330835859|ref|YP_004410587.1| beta-lactamase domain-containing protein [Metallosphaera cuprina
Ar-4]
gi|329567998|gb|AEB96103.1| beta-lactamase domain-containing protein [Metallosphaera cuprina
Ar-4]
Length = 638
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 62/155 (40%), Gaps = 7/155 (4%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYGNHSS------WAYGEEIFTGPIWKI 54
M + D R + K+ H + Y+E + + + G I +
Sbjct: 279 MLDVADKEGRPLPYSAKEVRKELLHTITLDYEEVTDIAPDIRLTFYNAGHIIGSAMAHLH 338
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+ +G +VY DF + R L+ V F R +I +T + +Q R +++L+
Sbjct: 339 IGDGVHNLVYTGDFKYARTRLLDRAV-SEFPRVDTLIMETTYGVQEQTNRDQSEKKLIET 397
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
I T+ G VL+ V GR E+ ++ + K
Sbjct: 398 INNTINRGGKVLIPVLAVGRGQEIMLVINDAMKKK 432
>gi|253742318|gb|EES99157.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia intestinalis ATCC 50581]
Length = 620
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 54/143 (37%), Gaps = 16/143 (11%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
N+ F + P ET I + G+ I I + G ++VY D
Sbjct: 155 NTNFVADCQPSHDGKPVPETIINFSNAGH---------IIGAVITTVTVAGHAKLVYTGD 205
Query: 68 FNLKKERHLNGCVLDRF-IRPTVVITDTMSAIYQQARRRT---RDERLMTNILQTLRNNG 123
+N L G L I ++IT+T Y RR RD + ++ +TLR NG
Sbjct: 206 YNTTARTTLPGATLPSCAIGADILITETT---YCNISRRPSFYRDSLQLADVAETLRQNG 262
Query: 124 NVLVAVDTAGRVLELTHMLEQLW 146
VL+ G ++ + W
Sbjct: 263 RVLLPTSAMGLCQDIIVKVWSFW 285
>gi|342319748|gb|EGU11695.1| Endoribonuclease YSH1 [Rhodotorula glutinis ATCC 204091]
Length = 857
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 38 SSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSA 97
+S+A G + G +++ ++Y D++ +++RHL + + RP V+ +
Sbjct: 180 TSFAAGHVL--GACMFLIEVAGARVLYTGDYSTEEDRHLVPAKVPNWERPPDVMICESTY 237
Query: 98 IYQQARRRTRDERLMTNILQT-LRNNGNVLVAVDTAGRVLELTHMLEQLW 146
Q R E TN++++ L+ G VL+ V GR EL +L++ W
Sbjct: 238 GVQSHEPRLEKEAQFTNLVRSILKRGGRVLLPVFALGRAQELLLILDEYW 287
>gi|55378101|ref|YP_135951.1| mRNA 3'-end processing factor-like protein [Haloarcula marismortui
ATCC 43049]
gi|448648471|ref|ZP_21679602.1| mRNA 3'-end processing factor-like protein [Haloarcula californiae
ATCC 33799]
gi|55230826|gb|AAV46245.1| mRNA 3'-end processing factor-like [Haloarcula marismortui ATCC
43049]
gi|445775572|gb|EMA26582.1| mRNA 3'-end processing factor-like protein [Haloarcula californiae
ATCC 33799]
Length = 640
Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+ EG + + D + K R L+G V D T+V+ T ++ ER++ +
Sbjct: 342 IGEGRYNVAFSGDIHYKDTRLLDGAVNDFPRVETLVLESTYGGKNDYQTDQSDSERVLRD 401
Query: 115 IL-QTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD 150
++ ++ N+G VL+ GR EL +LE+ R D
Sbjct: 402 VINESYENDGKVLIPAFAVGRSQELMLVLEEAMRKGD 438
>gi|157876175|ref|XP_001686447.1| putative cleavage and polyadenylation specificity factor
[Leishmania major strain Friedlin]
gi|68129521|emb|CAJ08064.1| putative cleavage and polyadenylation specificity factor
[Leishmania major strain Friedlin]
Length = 756
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 63 VYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNN 122
+Y DF+ +RHL G + + P ++I ++ + I + R R+ +++ +R
Sbjct: 187 LYTGDFSRVPDRHLLGAEVPPY-SPDILIAESTNGIRELESREEREHLFTSSVHDVVRRG 245
Query: 123 GNVLVAVDTAGRVLELTHMLEQLW 146
G LV V GR EL +LE+ W
Sbjct: 246 GRCLVPVFALGRAQELLLILEEFW 269
>gi|428671767|gb|EKX72682.1| cleavage and polyadenylation specificity factor protein, putative
[Babesia equi]
Length = 732
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I+Y D++ + +RHL + I ++I+++ I R R+ R + +L L
Sbjct: 206 ILYTGDYSTEYDRHLPSAEIPN-INVHLLISESTYGIRIHEERTQREARFLHVVLDILMR 264
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
+G L+ V GR E+ +LE+ W
Sbjct: 265 DGKCLLPVFALGRAQEILLILEEYW 289
>gi|401827745|ref|XP_003888165.1| putative RNA-processing beta-lactamase-fold exonuclease
[Encephalitozoon hellem ATCC 50504]
gi|392999365|gb|AFM99184.1| putative RNA-processing beta-lactamase-fold exonuclease
[Encephalitozoon hellem ATCC 50504]
Length = 643
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 61 EIVYGVDFNLKKERHLN-----GCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNI 115
+++Y DF+ +++RHL GC +D +IT++ + R R+ R + +
Sbjct: 168 KVLYTGDFSREEDRHLKAAESPGCKID------ALITESTYGVQCHLPRAEREGRFTSIV 221
Query: 116 LQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDS 151
++ G L+ V GR EL +LE+ W + S
Sbjct: 222 QNVVQRGGRCLLPVFALGRAQELLLILEEHWGSNAS 257
>gi|448636727|ref|ZP_21675175.1| mRNA 3'-end processing factor-like protein [Haloarcula sinaiiensis
ATCC 33800]
gi|445765033|gb|EMA16172.1| mRNA 3'-end processing factor-like protein [Haloarcula sinaiiensis
ATCC 33800]
Length = 640
Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+ EG + + D + K R L+G V D T+V+ T ++ ER++ +
Sbjct: 342 IGEGRYNVAFSGDIHYKDTRLLDGAVNDFPRVETLVLESTYGGKNDYQTDQSDSERVLRD 401
Query: 115 IL-QTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD 150
++ ++ N+G VL+ GR EL +LE+ R D
Sbjct: 402 VINESYENDGKVLIPAFAVGRSQELMLVLEEAMRKGD 438
>gi|313215108|emb|CBY42824.1| unnamed protein product [Oikopleura dioica]
Length = 323
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 22/25 (88%)
Query: 11 FFKSNKKQFPMFPFHETKIKYDEYG 35
F K+ K++FP+FPF+E +IK+D+YG
Sbjct: 13 FKKARKEKFPLFPFNENRIKWDDYG 37
>gi|398022636|ref|XP_003864480.1| cleavage and polyadenylation specificity factor, putative
[Leishmania donovani]
gi|322502715|emb|CBZ37798.1| cleavage and polyadenylation specificity factor, putative
[Leishmania donovani]
Length = 756
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 63 VYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNN 122
+Y DF+ +RHL G + + P ++I ++ + I + R R+ +++ +R
Sbjct: 187 LYTGDFSRVPDRHLLGAEVPPY-SPDILIAESTNGIRELESREEREHLFTSSVHDVVRRG 245
Query: 123 GNVLVAVDTAGRVLELTHMLEQLW 146
G LV V GR EL +LE+ W
Sbjct: 246 GRCLVPVFALGRAQELLLILEEFW 269
>gi|332712233|ref|ZP_08432161.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Moorea producens 3L]
gi|332349039|gb|EGJ28651.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Moorea producens 3L]
Length = 867
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
++Y DF+ R NG L ++IT++ RR ++ LM +I + ++
Sbjct: 438 LLYTGDFHTTNSRTTNGLNLAELPEADILITESTYGSSVHPARRNQETALMESIAEVVQA 497
Query: 122 NGNVLVAVDTAGRVLEL 138
GNVL+ GR E+
Sbjct: 498 GGNVLIPSFALGRAQEI 514
>gi|146099573|ref|XP_001468678.1| putative cleavage and polyadenylation specificity factor
[Leishmania infantum JPCM5]
gi|134073046|emb|CAM71766.1| putative cleavage and polyadenylation specificity factor
[Leishmania infantum JPCM5]
Length = 756
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 63 VYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNN 122
+Y DF+ +RHL G + + P ++I ++ + I + R R+ +++ +R
Sbjct: 187 LYTGDFSRVPDRHLLGAEVPPY-SPDILIAESTNGIRELESREEREHLFTSSVHDVVRRG 245
Query: 123 GNVLVAVDTAGRVLELTHMLEQLW 146
G LV V GR EL +LE+ W
Sbjct: 246 GRCLVPVFALGRAQELLLILEEFW 269
>gi|147826468|emb|CAN66105.1| hypothetical protein VITISV_012700 [Vitis vinifera]
Length = 344
Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 56 KEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNI 115
K G+ +VY D+N+ +RHL +DR ++ ++IT++ A + + R+ + +
Sbjct: 229 KVGDAAMVYTGDYNMTPDRHLGAAQIDR-LQLDLLITESTYATTVRDSKYAREREFLKAV 287
Query: 116 LQTLRNNGNVLVAVDTAGR 134
+ + + G VL+ GR
Sbjct: 288 HKCVADGGKVLIPTFALGR 306
>gi|449296201|gb|EMC92221.1| hypothetical protein BAUCODRAFT_569527 [Baudoinia compniacensis
UAMH 10762]
Length = 834
Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ + RHL + R + +IT++ I R R+ LM +I L
Sbjct: 197 ILFTGDYSREDNRHLMPASIPRHVNVDCLITESTFGISTHVPRAERETALMRSITGILNR 256
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G L+ G EL +LE W
Sbjct: 257 GGRALLPTFALGGAQELLLILEDYW 281
>gi|149245580|ref|XP_001527267.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449661|gb|EDK43917.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 1067
Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 12/105 (11%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLN---------GCVLDRFIRPTVVITDTMSAIY 99
G W IVK + ++Y +N ++ LN G +RPT +T + +
Sbjct: 158 GTFWLIVKR-IDRVIYAPSWNHSRDSLLNNAGFINTQTGMPHVGLLRPTAFVTG--ADLG 214
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQ 144
+ R E+ + + TL N G ++ +GR LEL H+++Q
Sbjct: 215 SNLSHKKRCEKFLQLVDATLNNGGAAIIPTSISGRFLELFHLVDQ 259
>gi|448685512|ref|ZP_21693504.1| mRNA 3'-end processing factor-like protein [Haloarcula japonica DSM
6131]
gi|445782123|gb|EMA32974.1| mRNA 3'-end processing factor-like protein [Haloarcula japonica DSM
6131]
Length = 640
Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+ EG + + D + K R L+G V D T+V+ T ++ ER++ +
Sbjct: 342 IGEGRYNVAFSGDIHYKDTRLLDGAVNDFPRVETLVLESTYGGKNDYQTDQSDSERVLKD 401
Query: 115 IL-QTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
++ +T N+G VL+ GR EL +LE+ R
Sbjct: 402 VINETYENDGKVLIPAFAVGRSQELMLVLEEAMR 435
>gi|154336691|ref|XP_001564581.1| putative cleavage and polyadenylation specificity factor
[Leishmania braziliensis MHOM/BR/75/M2904]
gi|134061616|emb|CAM38647.1| putative cleavage and polyadenylation specificity factor
[Leishmania braziliensis MHOM/BR/75/M2904]
Length = 756
Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 63 VYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNN 122
+Y DF+ +RHL G + + P ++I ++ + I + R R+ +++ +R
Sbjct: 187 LYTGDFSRVPDRHLLGAEVPPY-SPDILIAESTNGIRELESREEREHLFTSSVHDVVRRG 245
Query: 123 GNVLVAVDTAGRVLELTHMLEQLW 146
G LV V GR EL +LE+ W
Sbjct: 246 GRCLVPVFALGRAQELLLILEEFW 269
>gi|396082284|gb|AFN83894.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon romaleae SJ-2008]
Length = 643
Score = 38.5 bits (88), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 61 EIVYGVDFNLKKERHLN-----GCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNI 115
+++Y DF+ +++RHL GC +D I T++ + R R+ R + +
Sbjct: 168 KVLYTGDFSREEDRHLKAAESPGCKIDGLI------TESTYGVQCHLPRAEREGRFTSIV 221
Query: 116 LQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDS 151
++ G L+ V GR EL +LE+ W + S
Sbjct: 222 QNVVQRGGRCLLPVFALGRAQELLLILEEHWNSNTS 257
>gi|164658265|ref|XP_001730258.1| hypothetical protein MGL_2640 [Malassezia globosa CBS 7966]
gi|159104153|gb|EDP43044.1| hypothetical protein MGL_2640 [Malassezia globosa CBS 7966]
Length = 741
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
++Y D++ +++RHL + +RP V+I ++ R ++ R + I +R
Sbjct: 95 VLYTGDYSREEDRHLVQAEVPP-MRPDVLICESTYGTQSLEPRLDKEMRFTSLIHSIIRR 153
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 154 GGRVLLPVFVLGRAQELLLLLDEYW 178
>gi|448577029|ref|ZP_21642747.1| mRNA 3'-end processing factor [Haloferax larsenii JCM 13917]
gi|445728153|gb|ELZ79760.1| mRNA 3'-end processing factor [Haloferax larsenii JCM 13917]
Length = 410
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 2/111 (1%)
Query: 33 EYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVIT 92
E H Y G +V +GE ++Y DF+ +R + G DR V+
Sbjct: 123 EAAGHEVTFYNAGHIPGSAHVLVDDGETRLLYTADFHTDDQRLVAGTT-DRPDADVVICE 181
Query: 93 DTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
T S + + R T +ER + ++ T+ G V+V GR E+ +L+
Sbjct: 182 STYSDV-EHDDRATVEERFVESVRTTIWEGGTVVVPAFAIGRTQEILMVLD 231
>gi|433656047|ref|YP_007299755.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Thermoanaerobacterium thermosaccharolyticum
M0795]
gi|433294236|gb|AGB20058.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Thermoanaerobacterium thermosaccharolyticum
M0795]
Length = 820
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 9/122 (7%)
Query: 23 PFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLD 82
PF T +K + ++ G I+ + EG I Y DF+ ++ + G +
Sbjct: 134 PFMGTDLKV------TLYSAGHIAGAASIYIVGNEGS--IFYSGDFSRFRQNTIEGASIP 185
Query: 83 RFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHML 142
+ +RP V ++ A R + RL+ I L+N G VL+ GR E+ +L
Sbjct: 186 K-LRPDVAFFESTYGDKLHANRELEESRLVEKINAVLKNGGKVLIPAFALGRAQEIILIL 244
Query: 143 EQ 144
++
Sbjct: 245 KK 246
>gi|430760002|ref|YP_007215859.1| Metallo-beta-lactamase family protein, RNA-specific
[Thioalkalivibrio nitratireducens DSM 14787]
gi|430009626|gb|AGA32378.1| Metallo-beta-lactamase family protein, RNA-specific
[Thioalkalivibrio nitratireducens DSM 14787]
Length = 638
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 2/103 (1%)
Query: 43 GEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQA 102
GEE+ +GP +E IV+ D L R +++ ++
Sbjct: 330 GEEVSSGPRDDEAEEATTRIVFSGDLGAPNSPLLPAPNPPE--RADILVLESTYGDRVHE 387
Query: 103 RRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQL 145
R TR RL I L NNG V++ + GR EL + LE L
Sbjct: 388 DRSTRQARLKAAIDHALENNGTVVIPAFSIGRTQELLYELEDL 430
>gi|71656590|ref|XP_816840.1| cleavage and polyadenylation specificity factor [Trypanosoma cruzi
strain CL Brener]
gi|50363263|gb|AAT75334.1| cleavage polyadenylation specificity factor CPSF100 [Trypanosoma
cruzi]
gi|70881994|gb|EAN94989.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma cruzi]
Length = 802
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 15/114 (13%)
Query: 46 IFTGPIWK----IVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPT----VVITDTMSA 97
IF+G + ++K +E+ Y DF+LK L RF+ PT + I +
Sbjct: 166 IFSGRMLGGHGWLIKYKIDELFYCPDFSLKPSY-----ALKRFLPPTTSTLLFIDGSPFH 220
Query: 98 IYQQARRRTRDE--RLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+ R+ ++ L+ IL TLRN +VL+ V GR LE+ ++ L K
Sbjct: 221 LSGNTGRKYEEQLNALIREILGTLRNGKDVLIPVSVVGRGLEILTIVTHLLTEK 274
>gi|149245028|ref|XP_001527048.1| hypothetical protein LELG_01877 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449442|gb|EDK43698.1| hypothetical protein LELG_01877 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 812
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Query: 41 AYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ 100
AY G ++ G ++++ D++ ++ RHL + RP ++IT++
Sbjct: 174 AYHAGHVLGACMYFIEIGGLKVLFTGDYSREENRHLQAAEVPP-TRPDILITESTFGTGT 232
Query: 101 QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW-RNKD 150
+ +++L ++I T+ G VL+ V G E+ +LE+ W +N+D
Sbjct: 233 LESKAELEKKLTSHIHATITRGGRVLLPVFALGNAQEILLILEEYWEKNED 283
>gi|390354408|ref|XP_796109.3| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Strongylocentrotus purpuratus]
Length = 457
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I+Y DF+ +++RHL + ++P ++IT+ + +R R+ R + + +
Sbjct: 145 KILYTGDFSRQEDRHLMQAEIPN-VKPDILITEATYGTHIHEKREDREARFTSTVHDIVN 203
Query: 121 NNGNVLVAVDTAGRVLELTHML 142
G L+ V GR EL +L
Sbjct: 204 RGGRCLIPVFALGRAQELLLIL 225
>gi|451818434|ref|YP_007454635.1| RNA-metabolising metallo-beta-lactamase [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451784413|gb|AGF55381.1| RNA-metabolising metallo-beta-lactamase [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 851
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 59 EEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQT 118
E + Y DF++ +R + G L + +RP V I ++ + R + L+ + +
Sbjct: 164 EGAVFYSGDFSVFSQRTVEGAKLPK-LRPDVAIVESTYGDRLHSNREVEERNLIEAVKEC 222
Query: 119 LRNNGNVLVAVDTAGRVLELTHMLE 143
+ NNG +L+ GR E+ +L+
Sbjct: 223 IENNGKMLIPAFALGRAQEVILILK 247
>gi|344996811|ref|YP_004799154.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
lactoaceticus 6A]
gi|343965030|gb|AEM74177.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
lactoaceticus 6A]
Length = 822
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+K E I+Y DF+ ++ ++ + + IRP VVI ++ R +ERL
Sbjct: 155 IKTQEGSILYTGDFSADRQLTVDKASVPK-IRPDVVICESTYGDRLHTNRSFEEERLFNT 213
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+ + + G VL+ GR E+ +L + +
Sbjct: 214 VAEVVSQGGKVLIPAFAIGRAQEIILILRNYMKKR 248
>gi|269860949|ref|XP_002650191.1| cleavage and polyadenylation specificity factor subunit
[Enterocytozoon bieneusi H348]
gi|220066365|gb|EED43849.1| cleavage and polyadenylation specificity factor subunit
[Enterocytozoon bieneusi H348]
Length = 501
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
V+ +E +VY DF+ +R+L +D + P ++IT++ + R++++ ++
Sbjct: 164 VRYLDETVVYTGDFSTIPDRYLRAATID-CLYPDLLITESTYGNIVRDLRKSKEREMIMA 222
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
+ +T+ G VL+ + GR E+ +L+
Sbjct: 223 VHKTIDIGGKVLIPIFALGRAQEICLLLK 251
>gi|15920543|ref|NP_376212.1| cleavage and polyadenylation specificity factor large subunit
[Sulfolobus tokodaii str. 7]
gi|342306155|dbj|BAK54244.1| putative ribonuclease J [Sulfolobus tokodaii str. 7]
Length = 637
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+ +G IVY DF + + L+ D F R +I +T ++Q R + +L+
Sbjct: 339 IGDGTHNIVYTGDFKYARTKLLDKAN-DEFPRVDTIIMETTYGDHEQENREEAEAKLIEI 397
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
I +T+ G VL+ V GR E+ +L + K
Sbjct: 398 INRTISRGGRVLIPVLAVGRGQEIMLVLNDAMKKK 432
>gi|209420822|gb|ACI46951.1| cyclin B [Fenneropenaeus penicillatus]
Length = 475
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNH 37
N F+S +K PMFPFHE KI+ D+YG +
Sbjct: 160 NQSMFRS-RKHHPMFPFHEEKIRGDDYGEY 188
>gi|302872375|ref|YP_003841011.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
obsidiansis OB47]
gi|302575234|gb|ADL43025.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
obsidiansis OB47]
Length = 821
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
++ E I+Y DF+ K+ ++ + + IRP +VI ++ R +ERL
Sbjct: 155 IQTQEGSILYTGDFSADKQLTVDKASVPK-IRPDIVICESTYGDRLHTNRSFEEERLFNT 213
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
I + + G VL+ GR E+ +L + +
Sbjct: 214 IYEVISQGGKVLIPAFAIGRAQEVILILRNYMKKR 248
>gi|20091343|ref|NP_617418.1| mRNA 3-end processing factor [Methanosarcina acetivorans C2A]
gi|19916474|gb|AAM05898.1| mRNA 3-end processing factor [Methanosarcina acetivorans C2A]
Length = 416
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 60 EEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTL 119
E ++Y DF++K+ R + G ++F ++ ++ + R+ ++R + ++L+TL
Sbjct: 154 ESLLYTGDFSMKETRLVPGA--EKFPEADTLVLESTYFGEEHVPRKETEKRFIDSVLETL 211
Query: 120 RNNGNVLVAVDTAGRVLELTHMLE 143
G L+ GR E+ +L+
Sbjct: 212 ERGGTALIPAFAIGRTQEILMLLD 235
>gi|302309512|ref|NP_986945.2| AGR279Cp [Ashbya gossypii ATCC 10895]
gi|442570103|sp|Q74ZC0.2|YSH1_ASHGO RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|299788393|gb|AAS54769.2| AGR279Cp [Ashbya gossypii ATCC 10895]
Length = 771
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 29 IKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPT 88
IK+ Y H+ G +F I + I++ D++ + +RHLN +
Sbjct: 155 IKFTAY--HAGHVLGAAMFQVEIAGL------RILFTGDYSRELDRHLNSAEIPTLPSDI 206
Query: 89 VVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+++ T + R +++++L I T+ G VL+ V GR E+ +L++ W
Sbjct: 207 LIVESTFGTATHEPRT-SKEKKLTQLIHTTVSKGGRVLLPVFALGRAQEIMLILDEYW 263
>gi|312135668|ref|YP_004003006.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
owensensis OL]
gi|311775719|gb|ADQ05206.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
owensensis OL]
Length = 821
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
++ E I+Y DF+ K+ ++ + + IRP +VI ++ R +ERL
Sbjct: 155 IQTQEGSILYTGDFSADKQLTVDRASVPK-IRPDIVICESTYGDRLHTNRSFEEERLFNT 213
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
I + + G VL+ GR E+ +L + +
Sbjct: 214 IFEVISQGGKVLIPAFAIGRAQEVILILRNYMKKR 248
>gi|374110195|gb|AEY99100.1| FAGR279Cp [Ashbya gossypii FDAG1]
Length = 771
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 29 IKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPT 88
IK+ Y H+ G +F I + I++ D++ + +RHLN +
Sbjct: 155 IKFTAY--HAGHVLGAAMFQVEIAGL------RILFTGDYSRELDRHLNSAEIPTLPSDI 206
Query: 89 VVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+++ T + R +++++L I T+ G VL+ V GR E+ +L++ W
Sbjct: 207 LIVESTFGTATHEPRT-SKEKKLTQLIHTTVSKGGRVLLPVFALGRAQEIMLILDEYW 263
>gi|344212168|ref|YP_004796488.1| mRNA 3'-end processing factor-like protein [Haloarcula hispanica
ATCC 33960]
gi|343783523|gb|AEM57500.1| mRNA 3'-end processing factor-like protein [Haloarcula hispanica
ATCC 33960]
Length = 640
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+ EG + + D + K R L+G V D T+V+ T ++ ER++ +
Sbjct: 342 IGEGRYNVAFSGDIHYKDTRLLDGAVNDFPRVETLVLESTYGGKNDYQTDQSDSERVLRD 401
Query: 115 IL-QTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD 150
++ + N+G +L+ GR EL +LE+ R D
Sbjct: 402 VINEAYENDGKILIPAFAVGRSQELMLVLEEAMRKGD 438
>gi|315426611|dbj|BAJ48239.1| beta-lactamase domain protein [Candidatus Caldiarchaeum
subterraneum]
Length = 635
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIR-PTVVITDTMSAIYQQARRRTRDERLMT 113
+ EG IVY DF ++ L+ CV +F R T+++ T A + L
Sbjct: 339 IGEGLHNIVYTGDFKYERSTALDPCV-SKFPRVETLIMESTYGATPVPYTLEQSEALLAE 397
Query: 114 NILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
I T+ G V++ V GR E+ +L +L+ K
Sbjct: 398 KITATINRGGKVIIPVPAIGRAQEIMLVLNKLFTEK 433
>gi|315426553|dbj|BAJ48183.1| beta-lactamase domain protein [Candidatus Caldiarchaeum
subterraneum]
gi|343485301|dbj|BAJ50955.1| beta-lactamase domain protein [Candidatus Caldiarchaeum
subterraneum]
Length = 635
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIR-PTVVITDTMSAIYQQARRRTRDERLMT 113
+ EG IVY DF ++ L+ CV +F R T+++ T A + L
Sbjct: 339 IGEGLHNIVYTGDFKYERSTALDPCV-SKFPRVETLIMESTYGATPVPYTLEQSEALLAE 397
Query: 114 NILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
I T+ G V++ V GR E+ +L +L+ K
Sbjct: 398 KITATINRGGKVIIPVPAIGRAQEIMLVLNKLFTEK 433
>gi|315425373|dbj|BAJ47039.1| mRNA 3'-end processing factor [Candidatus Caldiarchaeum
subterraneum]
Length = 638
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIR-PTVVITDTMSAIYQQARRRTRDERLMT 113
+ EG IVY DF ++ L+ CV +F R T+++ T A + L
Sbjct: 342 IGEGLHNIVYTGDFKYERSTALDPCV-SKFPRVETLIMESTYGATPVPYTLEQSEALLAE 400
Query: 114 NILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
I T+ G V++ V GR E+ +L +L+ K
Sbjct: 401 KITATINRGGKVIIPVPAIGRAQEIMLVLNKLFTEK 436
>gi|363750442|ref|XP_003645438.1| hypothetical protein Ecym_3113 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889072|gb|AET38621.1| Hypothetical protein Ecym_3113 [Eremothecium cymbalariae
DBVPG#7215]
Length = 773
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 13/127 (10%)
Query: 24 FHET----KIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGC 79
FH T IK+ Y H+ G +F I + I++ D++ + +RHLN
Sbjct: 146 FHSTIDVNGIKFTAY--HAGHVLGAAMFQVEIAGL------RILFTGDYSRELDRHLNSA 197
Query: 80 VLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELT 139
+ +++ T + R +++ +L I T+ G VL+ V GR E+
Sbjct: 198 EVPSLPSDILIVESTFGTATHEPRV-SKERKLTQLIHTTVAKGGRVLLPVFALGRAQEIM 256
Query: 140 HMLEQLW 146
+L++ W
Sbjct: 257 LILDEYW 263
>gi|421616215|ref|ZP_16057231.1| metallo-beta-lactamase family protein [Pseudomonas stutzeri KOS6]
gi|421617026|ref|ZP_16058024.1| metallo-beta-lactamase family protein [Pseudomonas stutzeri KOS6]
gi|409780943|gb|EKN60552.1| metallo-beta-lactamase family protein [Pseudomonas stutzeri KOS6]
gi|409781862|gb|EKN61435.1| metallo-beta-lactamase family protein [Pseudomonas stutzeri KOS6]
Length = 475
Score = 37.7 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 86 RPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQL 145
R +V+ ++ RR R +RL I Q L ++G VL+ + GR EL + LE +
Sbjct: 199 RADIVVLESTYGDRTHQSRRDRRQRLQAVIEQALADSGTVLIPAFSIGRTQELLYELEDI 258
Query: 146 WRNKDSG 152
++ G
Sbjct: 259 IHHRTRG 265
>gi|438002123|ref|YP_007271866.1| Metallo-beta-lactamase family protein, RNA-specific
[Tepidanaerobacter acetatoxydans Re1]
gi|432178917|emb|CCP25890.1| Metallo-beta-lactamase family protein, RNA-specific
[Tepidanaerobacter acetatoxydans Re1]
Length = 469
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 20 PMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGC 79
P F F K+ D + ++ G I+ + EG + Y D + ++ + G
Sbjct: 128 PNFSF---KLFSDSNITATFYSAGHIAGAASIYMVGSEGS--LFYSGDISGFRQNTIEGA 182
Query: 80 VLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELT 139
+ + +RP V I ++ A R+ ++RL+ +I + + N G VLV GR E+
Sbjct: 183 TVPK-LRPDVAIFESTYGDKLHANRQVEEQRLIESINEVIINGGKVLVPAFALGRAQEVI 241
Query: 140 HMLEQ 144
+L++
Sbjct: 242 LILKK 246
>gi|312127068|ref|YP_003991942.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
hydrothermalis 108]
gi|311777087|gb|ADQ06573.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
hydrothermalis 108]
Length = 822
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
++ E I+Y DF+ K+ ++ + + IRP +VI ++ R +ERL
Sbjct: 155 IQTQEGSILYTGDFSADKQLTVDKASVPK-IRPDIVICESTYGDRLHTNRSFEEERLFNT 213
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+ + + G VL+ GR E+ +L + +
Sbjct: 214 VAEVISQGGKVLIPAFAIGRAQEIILILRNYMKKR 248
>gi|379011607|ref|YP_005269419.1| RNA-metabolising metallo-beta-lactamase [Acetobacterium woodii DSM
1030]
gi|375302396|gb|AFA48530.1| RNA-metabolising metallo-beta-lactamase [Acetobacterium woodii DSM
1030]
Length = 545
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 16/104 (15%)
Query: 55 VKEGEEE--IVYGVDFNLKKERHLNGCVLDRFIRPTVVITD---TMSAIYQQARRRTRDE 109
VKEGE+E +VY D +R LN PT++ M Y T +E
Sbjct: 173 VKEGEKESKLVYSGDIGAANQRMLN--------NPTLISEADYLIMETTYGDRNHETHEE 224
Query: 110 ---RLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD 150
R + IL+T+ G V++ GR +L H LE + N +
Sbjct: 225 SRKRFIDIILKTINRGGTVVIPSFALGRTQDLIHELELFYDNHE 268
>gi|124028414|ref|YP_001013734.1| exonuclease [Hyperthermus butylicus DSM 5456]
gi|123979108|gb|ABM81389.1| predicted exonuclease [Hyperthermus butylicus DSM 5456]
Length = 643
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+ EG IVY DF + R L+ + F R +I ++ Q RR + L++
Sbjct: 338 IGEGLHNIVYTGDFKFGRTRLLDKAHTE-FPRVETLIMESTYGDRDQPRRDEAELELISV 396
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
I +T+ G VL+ V GR E+ +L R K
Sbjct: 397 ISKTIARRGKVLIPVMAVGRAQEILLVLVDALRKK 431
>gi|302846726|ref|XP_002954899.1| hypothetical protein VOLCADRAFT_65253 [Volvox carteri f.
nagariensis]
gi|300259874|gb|EFJ44098.1| hypothetical protein VOLCADRAFT_65253 [Volvox carteri f.
nagariensis]
Length = 477
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 12/103 (11%)
Query: 58 GEEEIVYGVDFNLKKERHL----------NGCVLDRFIR-PTVVITDTMSAIYQQARRRT 106
G +Y DFN +RHL G +R P V+I++ A + +R
Sbjct: 178 GHLTALYTGDFNSSPDRHLGPAEAPLALLQGGPSGASVRHPDVLISEATYAATLRDSKRA 237
Query: 107 RDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW-RN 148
R+ L+ +++T+ G VL+ GR EL ++ W RN
Sbjct: 238 RERDLLGAVVETVAAGGKVLIPTFAMGRAQELLMLITDCWERN 280
>gi|448612591|ref|ZP_21662613.1| mRNA 3'-end processing factor [Haloferax mucosum ATCC BAA-1512]
gi|445741439|gb|ELZ92941.1| mRNA 3'-end processing factor [Haloferax mucosum ATCC BAA-1512]
Length = 410
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 23 PFHETKIK-------YDEYGNHSSWAYGEEIF------TGPIWKIVKEGEEEIVYGVDFN 69
PF ET I+ +YG + A E F G ++ +GE ++Y DF+
Sbjct: 100 PFTETHIQRMTQQSDPHDYGETFTAAGHEVTFYNAGHIPGSAHVLIDDGETRLLYTADFH 159
Query: 70 LKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAV 129
+R ++G DR V+ T S + + R T ++R + ++ T+ G V+V
Sbjct: 160 TDDQRLVSGTT-DRPDADVVICESTYSDV-EHDDRATVEKRFIESVQTTIWQGGTVVVPA 217
Query: 130 DTAGRVLELTHMLE 143
GR E+ +L+
Sbjct: 218 FAIGRTQEILMVLD 231
>gi|156083689|ref|XP_001609328.1| cleavage and polyadenylation specifity factor [Babesia bovis T2Bo]
gi|154796579|gb|EDO05760.1| cleavage and polyadenylation specifity factor [Babesia bovis]
Length = 709
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 13/128 (10%)
Query: 24 FHETK----IKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGC 79
FHE K IK+ Y + G +F +V+ I+Y D++ + +RH+ C
Sbjct: 175 FHEEKDVGGIKFSCY--RAGHVLGASMF------LVEMDGVRILYTGDYSTEVDRHVP-C 225
Query: 80 VLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELT 139
I ++I ++ I R R+ R + ++++ + G L+ V GR E+
Sbjct: 226 AEIPPINAHLLICESTYGIRIHEERVQRERRFLRSVIEIVTRGGKCLLPVFALGRAQEIL 285
Query: 140 HMLEQLWR 147
+L++ W+
Sbjct: 286 LILDEYWQ 293
>gi|221504752|gb|EEE30417.1| cleavage and polyadenylation specificity factor, putative
[Toxoplasma gondii VEG]
Length = 1100
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 54 IVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMT 113
+++ G ++Y DF+ +++RH+ + + ++I ++ I+ R+ R+ R +
Sbjct: 287 LIEIGGVRMLYTGDFSRERDRHVPIAEVPP-VDVQLLICESTYGIHVHDDRQLRERRFLK 345
Query: 114 NILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
++ + G L+ V GR EL +LE+ W
Sbjct: 346 AVVDIVNRGGKCLLPVFALGRAQELLLILEEYW 378
>gi|221484558|gb|EEE22852.1| cleavage and polyadenylation specificity factor, putative
[Toxoplasma gondii GT1]
Length = 1100
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 54 IVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMT 113
+++ G ++Y DF+ +++RH+ + + ++I ++ I+ R+ R+ R +
Sbjct: 287 LIEIGGVRMLYTGDFSRERDRHVPIAEVPP-VDVQLLICESTYGIHVHDDRQLRERRFLK 345
Query: 114 NILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
++ + G L+ V GR EL +LE+ W
Sbjct: 346 AVVDIVNRGGKCLLPVFALGRAQELLLILEEYW 378
>gi|332799023|ref|YP_004460522.1| beta-lactamase domain-containing protein [Tepidanaerobacter
acetatoxydans Re1]
gi|332696758|gb|AEE91215.1| beta-lactamase domain protein [Tepidanaerobacter acetatoxydans Re1]
Length = 831
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 20 PMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGC 79
P F F K+ D + ++ G I+ + EG + Y D + ++ + G
Sbjct: 128 PNFSF---KLFSDSNITATFYSAGHIAGAASIYMVGSEGS--LFYSGDISGFRQNTIEGA 182
Query: 80 VLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELT 139
+ + +RP V I ++ A R+ ++RL+ +I + + N G VLV GR E+
Sbjct: 183 TVPK-LRPDVAIFESTYGDKLHANRQVEEQRLIESINEVIINGGKVLVPAFALGRAQEVI 241
Query: 140 HMLEQ 144
+L++
Sbjct: 242 LILKK 246
>gi|312621851|ref|YP_004023464.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202318|gb|ADQ45645.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
kronotskyensis 2002]
Length = 821
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
++ E I+Y DF+ ++ ++ + + IRP VVI ++ R +ERL
Sbjct: 155 IQTQEGSILYTGDFSADRQLTVDKASVPK-IRPDVVICESTYGDRLHTNRNFEEERLFNT 213
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+ + + G VL+ GR E+ +L + +
Sbjct: 214 VAEVISQGGKVLIPAFAIGRAQEIILILRNFMKKR 248
>gi|288561234|ref|YP_003424720.1| RNA-metabolising metallo-beta-lactamase [Methanobrevibacter
ruminantium M1]
gi|288543944|gb|ADC47828.1| RNA-metabolising metallo-beta-lactamase [Methanobrevibacter
ruminantium M1]
Length = 636
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQA--RRRTRDERLM 112
+ +G ++Y DF +K R L RF R I ++ ++ R ++ LM
Sbjct: 340 IGDGAHNLLYTGDFKYEKSRLLEPATT-RFPRVESCIMESTYGGHEDVTPSRNNAEKELM 398
Query: 113 TNILQTLRNNGNVLVAVDTAGRVLELTHMLEQ 144
I +T++ G VL+ V GR EL +LE+
Sbjct: 399 KTIYKTIKRGGKVLLPVFAVGRAQELMIVLEE 430
>gi|403216468|emb|CCK70965.1| hypothetical protein KNAG_0F03030 [Kazachstania naganishii CBS
8797]
Length = 820
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 9/127 (7%)
Query: 29 IKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPT 88
IK+ Y H+ G +F I + +I++ D++ + +RHLN +
Sbjct: 152 IKFTAY--HAGHVLGAAMFQIEIAGL------KILFTGDYSREMDRHLNSAEVPPQSSDI 203
Query: 89 VVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
+V+ T + R R+ +L I T+ G VL+ V GR EL +L++ W+
Sbjct: 204 LVVESTFGTATHEPRLH-RENKLTQLIHTTVGRGGRVLMPVFALGRAQELMLILDEYWQK 262
Query: 149 KDSGLVS 155
L S
Sbjct: 263 HSDELGS 269
>gi|313224131|emb|CBY43589.1| unnamed protein product [Oikopleura dioica]
Length = 213
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 42 YGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSA 97
Y + ++KI G+E ++Y DFN+ +RHL DR +PTV+I+++ A
Sbjct: 158 YAGHVLGAAMFKITV-GDESVLYTGDFNMTPDRHLGAAWADR-CKPTVLISESTYA 211
>gi|146163951|ref|XP_001012725.2| metallo beta lactamase domain containing protein [Tetrahymena
thermophila]
gi|146145850|gb|EAR92480.2| metallo beta lactamase domain containing protein [Tetrahymena
thermophila SB210]
Length = 750
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 104 RRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLV 154
R R+++L +++ ++N G L+ V GR E+ +LE+ W+ S L
Sbjct: 205 RSEREQQLTQEVMRIVKNKGQCLLPVFALGRAQEIVLILEEFWKQNSSELA 255
>gi|72387720|ref|XP_844284.1| cleavage and polyadenylation specificity factor subunit
[Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|62359436|gb|AAX79873.1| cleavage and polyadenylation specificity factor subunit, putative
[Trypanosoma brucei]
gi|70800817|gb|AAZ10725.1| cleavage and polyadenylation specificity factor subunit, putative
[Trypanosoma brucei brucei strain 927/4 GUTat10.1]
Length = 770
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+++Y DF+ +RHL G + + P ++I ++ + I + R R+ T + ++
Sbjct: 198 KLLYTGDFSRVPDRHLLGAEVPPY-SPDILIAESTNGIRELESREERESLFTTWVHDVVK 256
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
G LV V GR EL +LE+ W
Sbjct: 257 GGGRCLVPVFALGRAQELLLILEEYW 282
>gi|401826283|ref|XP_003887235.1| beta-CASP domain-containing protein [Encephalitozoon hellem ATCC
50504]
gi|392998394|gb|AFM98254.1| beta-CASP domain-containing protein [Encephalitozoon hellem ATCC
50504]
Length = 639
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G I+KI K G E IV G++ N +KE HL+G ++ + + + + RD
Sbjct: 145 GCIYKISK-GAERIVIGLNMNHRKENHLDGIGFSGIGDCSLCVVNGNHVLAENISVAKRD 203
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLV 154
+ L + G V++ V + R LE+ +L + ++ +V
Sbjct: 204 NMFREIVGSVLSSGGKVILPVKYS-RFLEIALILNSMMAQRNERIV 248
>gi|226943707|ref|YP_002798780.1| metallo-beta-lactamase family protein [Azotobacter vinelandii DJ]
gi|226718634|gb|ACO77805.1| metallo-beta-lactamase family protein [Azotobacter vinelandii DJ]
Length = 510
Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 104 RRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQL 145
RR+R +RL T I Q L + G+VL+ + GR EL + LE++
Sbjct: 247 RRSRRQRLETMIEQALADRGSVLIPAFSIGRTQELLYELEEI 288
>gi|448517227|ref|XP_003867743.1| endoribonuclease [Candida orthopsilosis Co 90-125]
gi|380352082|emb|CCG22306.1| endoribonuclease [Candida orthopsilosis]
Length = 769
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G +++ G ++++ D++ ++ RHL + ++P V+IT++ + +
Sbjct: 174 GACMYLIEIGGLKVLFTGDYSREENRHLPSAEVPP-VKPDVLITESTFGTGTLEPKAELE 232
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW-RNKD 150
++L +I T+ G VL+ V G EL +L++ W +N+D
Sbjct: 233 KKLTNHIHATITKGGRVLLPVFALGNAQELLLILDEYWEKNED 275
>gi|350562671|ref|ZP_08931503.1| RNA-metabolising metallo-beta-lactamase [Thioalkalivibrio
thiocyanoxidans ARh 4]
gi|349778540|gb|EGZ32892.1| RNA-metabolising metallo-beta-lactamase [Thioalkalivibrio
thiocyanoxidans ARh 4]
Length = 579
Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 2/103 (1%)
Query: 43 GEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQA 102
GEE+ +GP + IV+ D L D R +++ ++
Sbjct: 271 GEEVSSGPRDDEAEGATTRIVFSGDLGAPNSPLLPAP--DPPERADILVLESTYGDRVHE 328
Query: 103 RRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQL 145
R TR RL I L NNG V++ + GR EL + LE L
Sbjct: 329 DRSTRQARLKAAIDHALENNGTVVIPAFSIGRTQELLYELEDL 371
>gi|261327437|emb|CBH10412.1| cleavage and polyadenylation specificity factor subunit, putative
[Trypanosoma brucei gambiense DAL972]
Length = 770
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+++Y DF+ +RHL G + + P ++I ++ + I + R R+ T + ++
Sbjct: 198 KLLYTGDFSRVPDRHLLGAEVPPY-SPDILIAESTNGIRELESREERESLFTTWVHDVVK 256
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
G LV V GR EL +LE+ W
Sbjct: 257 GGGRCLVPVFALGRAQELLLILEEYW 282
>gi|448738152|ref|ZP_21720182.1| mRNA cleavage and polyadenylation specificity factor-like protein
[Halococcus thailandensis JCM 13552]
gi|445802116|gb|EMA52424.1| mRNA cleavage and polyadenylation specificity factor-like protein
[Halococcus thailandensis JCM 13552]
Length = 414
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 56/137 (40%), Gaps = 17/137 (12%)
Query: 23 PFHETKIK-------YDEYGNHSSWAYGEEI-------FTGPIWKIVKEGEEEIVYGVDF 68
PF ET+++ +YG S A G EI G +V +GE + Y DF
Sbjct: 100 PFTETELRRLTQVSETHDYGE-SFTAAGHEISLYDAGHIPGSAHVLVDDGETRLCYTGDF 158
Query: 69 NLKKERHLNGCVLDRFIRPT--VVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVL 126
+ V RP VVI ++ + + R +ER ++ +TL N G V+
Sbjct: 159 HTGHPDRGQRLVTPSTARPDADVVICESTYSDTEHDPREQVEERFAESVRRTLWNGGTVV 218
Query: 127 VAVDTAGRVLELTHMLE 143
V GR EL + E
Sbjct: 219 VPAFAIGRTQELLLVCE 235
>gi|387927741|ref|ZP_10130420.1| RNA-metabolising metallo-beta-lactamase [Bacillus methanolicus PB1]
gi|387589885|gb|EIJ82205.1| RNA-metabolising metallo-beta-lactamase [Bacillus methanolicus PB1]
Length = 907
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 57 EGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNIL 116
EGE ++ G D + K R + G + I+P VVI ++ R T + RL ++
Sbjct: 161 EGERLLITG-DLSFKAGRTIPGAQVPHDIQPDVVIMESTYGNRAHTDRNTEERRLAEHVS 219
Query: 117 QTLRNNGNVLVAVDTAGRVLELTHMLE 143
+ + G L+ GR E+ +L+
Sbjct: 220 EVIAGGGFALIPAFALGRAQEVLLILQ 246
>gi|305663939|ref|YP_003860227.1| beta-lactamase [Ignisphaera aggregans DSM 17230]
gi|304378508|gb|ADM28347.1| beta-lactamase domain protein [Ignisphaera aggregans DSM 17230]
Length = 424
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 47 FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRT 106
G I + GE+ I+Y D N R + G + + I ++I ++ +Y R
Sbjct: 145 IPGSIMFKITMGEKSILYTGDINTIDTRLIKG-LKPQNIDADILIIESTYGLYDHPERSR 203
Query: 107 RDERLMTNILQTLRNNGNVLVAVDTAGRVLE-LTHMLEQL 145
+E + + + + GNVLV + GR E LT ++E+L
Sbjct: 204 VEELFIDTVKSVIEDGGNVLVPAFSLGRAQEILTLLIERL 243
>gi|332797143|ref|YP_004458643.1| beta-lactamase domain-containing protein [Acidianus hospitalis W1]
gi|332694878|gb|AEE94345.1| beta-lactamase domain protein [Acidianus hospitalis W1]
Length = 421
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 42/96 (43%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G +VK + ++ Y D N+ + + LD V++T+ + +R++ +
Sbjct: 145 GSAITVVKTNKGDVTYTGDINITNTKLMKPADLDIMRDSRVIVTEATYGKFNHPQRKSVE 204
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQ 144
+ I++ L G VLV + R E+ +L +
Sbjct: 205 DEFYNAIMEVLEEGGTVLVPAFSLSRSQEILSLLAE 240
>gi|222529916|ref|YP_002573798.1| beta-lactamase domain-containing protein [Caldicellulosiruptor
bescii DSM 6725]
gi|222456763|gb|ACM61025.1| beta-lactamase domain protein [Caldicellulosiruptor bescii DSM
6725]
Length = 821
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
++ E I+Y DF+ ++ ++ + + IRP VVI ++ R +ERL
Sbjct: 155 IQTQEGSILYTGDFSADRQLTVDKASVPK-IRPDVVICESTYGDRLHTNRNFEEERLFNT 213
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+ + + G VL+ GR E+ +L + +
Sbjct: 214 VAEVISQGGKVLIPAFAIGRAQEIILILRNYMKKR 248
>gi|385806123|ref|YP_005842521.1| beta-lactamase [Fervidicoccus fontis Kam940]
gi|383795986|gb|AFH43069.1| beta-lactamase domain protein [Fervidicoccus fontis Kam940]
Length = 619
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+ G IVY DF + LN D+F R +I ++ +Q R + L+
Sbjct: 319 IGNGLHNIVYTGDFKYAHTKLLNKAT-DKFPRLETLIMESTYGETKQPSRAEAESNLINI 377
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
I +T++ G +LV V + GR E+ +L + +
Sbjct: 378 IRKTVQRGGKILVPVMSVGRGQEIMLILSEAF 409
>gi|412990885|emb|CCO18257.1| predicted protein [Bathycoccus prasinos]
Length = 825
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
++Y D++ +RHL + + P VVI ++ + + R+ R I L
Sbjct: 226 VLYTGDYSRVADRHLPAADIPKKT-PHVVIVESTYGVSPHTPKEEREARFTDKIHGILGR 284
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G L+ V GR EL +LE W
Sbjct: 285 GGKCLLPVVALGRAQELLLILEDYW 309
>gi|407408786|gb|EKF32094.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma cruzi marinkellei]
Length = 632
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 54 IVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPT----VVITDTMSAIYQQARRRTRDE 109
++K +E+ Y DF+LK L RF+ PT + I + + R+ ++
Sbjct: 8 LIKYKIDELFYCPDFSLKPSY-----ALKRFLPPTTSTLLFIDGSPFHLSGNTGRKYEEQ 62
Query: 110 --RLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
L+ IL TLRN +VL+ V GR LE+ ++ L K
Sbjct: 63 LNALIREILGTLRNGKDVLIPVSVVGRGLEILTIVTHLLTEK 104
>gi|448629175|ref|ZP_21672574.1| mRNA 3'-end processing factor-like protein [Haloarcula vallismortis
ATCC 29715]
gi|445757741|gb|EMA09082.1| mRNA 3'-end processing factor-like protein [Haloarcula vallismortis
ATCC 29715]
Length = 640
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+ EG + + D + K R L+G V D T+V+ T ++ ER++ +
Sbjct: 342 IGEGRYNVAFSGDIHYKDTRLLDGAVNDFPRVETLVLESTYGGKNDYQTDQSDSERVLRD 401
Query: 115 IL-QTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD 150
++ + N+G +L+ GR EL +LE+ R D
Sbjct: 402 VINEAHENDGKILIPAFAVGRSQELMLVLEEAMREGD 438
>gi|402301584|ref|ZP_10820890.1| RNA-metabolising metallo-beta-lactamase [Bacillus alcalophilus ATCC
27647]
gi|401723328|gb|EJS96832.1| RNA-metabolising metallo-beta-lactamase [Bacillus alcalophilus ATCC
27647]
Length = 907
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G + +++ G +++ D + + R + G + + + P VVI ++ R T +
Sbjct: 152 GAVMFLIEGGGQKLFVTGDLSFQAGRTIPGAHVPQDLEPDVVIMESTYGNRTHTDRNTEE 211
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLV 154
RL ++ + N G L+ GR E+ +L+ D GL+
Sbjct: 212 RRLANDVANIIANGGFALIPAFALGRAQEVLLVLQDYM---DKGLI 254
>gi|401624663|gb|EJS42715.1| cft2p [Saccharomyces arboricola H-6]
Length = 858
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLN--------GCVLDRFIRPTVVITDTMSAIYQ 100
G IW + E+++Y +N ++ LN G L +RP+ +IT T+
Sbjct: 162 GSIW-CISTYSEKLIYAKRWNHTRDNILNAASILDATGKPLSTLMRPSAIIT-TLDKFGS 219
Query: 101 QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQL 145
+ R + + + L ++G+V++ VD +G+ LEL + +L
Sbjct: 220 SQPFKKRTKTFKDTLKKGLSSDGSVIIPVDMSGKFLELFTQVHEL 264
>gi|367016955|ref|XP_003682976.1| hypothetical protein TDEL_0G03980 [Torulaspora delbrueckii]
gi|359750639|emb|CCE93765.1| hypothetical protein TDEL_0G03980 [Torulaspora delbrueckii]
Length = 775
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 13/127 (10%)
Query: 24 FHET----KIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGC 79
FH T IK+ Y H+ G +F I + I++ D++ + +RHLN
Sbjct: 142 FHSTVDVNGIKFTAY--HAGHVLGAAMFQIEIAGV------RILFTGDYSRELDRHLNSA 193
Query: 80 VLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELT 139
+ ++ T + R R+ +L I T+ G VL+ V GR E+
Sbjct: 194 EVPTLPSDVHIVESTFGTATHEPRV-NRERKLTQLIHSTVSRGGRVLLPVFALGRAQEIM 252
Query: 140 HMLEQLW 146
+L++ W
Sbjct: 253 LILDEYW 259
>gi|296418744|ref|XP_002838985.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634979|emb|CAZ83176.1| unnamed protein product [Tuber melanosporum]
Length = 783
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I++ D++ + +RHL + +P ++I ++ R ++ RLM + L
Sbjct: 184 KILFTGDYSREDDRHLVSAEVPHQ-KPDLLICESTYGTATHMPRLEKEARLMKMTTEILN 242
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 243 RGGRVLMPVFALGRAQELLLILDEYW 268
>gi|291238246|ref|XP_002739041.1| PREDICTED: cleavage and polyadenylation specific factor 3-like
[Saccoglossus kowalevskii]
Length = 573
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 28/92 (30%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
VK G + +VY D+N+ +RHL GC R RD +
Sbjct: 166 VKVGSQSVVYTGDYNMTADRHL-GC-------------------------RERD--FLQK 197
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + G VL+ V GR EL +LE W
Sbjct: 198 VHDCVEKGGKVLIPVFALGRAQELCILLETFW 229
>gi|429327273|gb|AFZ79033.1| hypothetical protein BEWA_018780 [Babesia equi]
Length = 878
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 12/113 (10%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G +W ++ G I+ G DF + LN LD RP V+I + S+ ++ +
Sbjct: 177 GALW-VIDVGFSSIICGDDFRMYSSVLLNPIDLDHIARPDVLIINHESSKVREEEKTNYK 235
Query: 109 ER-----------LMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD 150
R L+ ++ TL + G+VL+ + ++ L L +W D
Sbjct: 236 GREKIYQFHDLDLLINKMVGTLNDGGSVLIPSNIDHTLINLLVTLNFVWATAD 288
>gi|312792978|ref|YP_004025901.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180118|gb|ADQ40288.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 822
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
++ E I+Y DF+ ++ ++ + + IRP VVI ++ R +ERL
Sbjct: 155 IQTQEGSILYTGDFSADRQLTVDKASVPK-IRPDVVICESTYGDRLHTNRSFEEERLFNT 213
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+ + + G VL+ GR E+ +L + +
Sbjct: 214 VAEVVSQGGKVLIPAFAIGRAQEIILILRNYMKKR 248
>gi|116873369|ref|YP_850150.1| 3-dehydroquinate synthase [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|123466475|sp|A0AK39.1|AROB_LISW6 RecName: Full=3-dehydroquinate synthase
gi|116742247|emb|CAK21371.1| 3-dehydroquinate synthase [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 365
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 32 DEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKK 72
+ YGN S W +GE I G I+ + E +YG+DFNL +
Sbjct: 254 EAYGNFSKWLHGEAITYGMIYALTM---SETIYGLDFNLAE 291
>gi|300706475|ref|XP_002995499.1| hypothetical protein NCER_101581 [Nosema ceranae BRL01]
gi|239604633|gb|EEQ81828.1| hypothetical protein NCER_101581 [Nosema ceranae BRL01]
Length = 671
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G ++K + ++Y D++ +++RHL + +IT++ + R R+
Sbjct: 180 GAAMFLIKIEDSVMLYTGDYSREEDRHLKAAESPN-CKIHALITESTYGVQCHLSRDERE 238
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R + I + + G L+ V GR EL +L++ W N
Sbjct: 239 SRFTSTITKIVTRGGRCLLPVFALGRAQELLLILDEHWSN 278
>gi|448313126|ref|ZP_21502852.1| beta-lactamase [Natronolimnobius innermongolicus JCM 12255]
gi|445599203|gb|ELY53241.1| beta-lactamase [Natronolimnobius innermongolicus JCM 12255]
Length = 412
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 19/136 (13%)
Query: 23 PFHETKIK-----YDEYGNHSSW-AYGEEI-------FTGPIWKIVKEGEEEIVYGVDFN 69
PF ET +K + +G S+ A G E+ G +V +GE ++Y DF+
Sbjct: 100 PFTETDVKRVTQVSETHGYRESFEAAGHEVTFFNAGHIPGSAHVLVDDGETRLLYTGDFH 159
Query: 70 LKKERHLNGCVLDRFIRPT--VVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+R ++G RP +V+ ++ + + R +ER ++ TL G V+V
Sbjct: 160 TDDQRLVSGTT----ARPDADIVVCESTYSDVEHEDRAVVEERFAESVETTLWEGGTVVV 215
Query: 128 AVDTAGRVLELTHMLE 143
GR E+ + E
Sbjct: 216 PAFAIGRTQEMLLVCE 231
>gi|297527491|ref|YP_003669515.1| KH-domain/beta-lactamase-domain-containing protein [Staphylothermus
hellenicus DSM 12710]
gi|297256407|gb|ADI32616.1| KH-domain/beta-lactamase-domain protein [Staphylothermus hellenicus
DSM 12710]
Length = 647
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 58 GEEEIVYGVDFNLKKERHLNGCVLDRFIR-PTVVITDTMSAIYQQARRRTRDERLMTNIL 116
G IVY DF R LN D+F R T+++ T A QQ+RR E L+ +
Sbjct: 346 GLHNIVYTGDFKYAPTRLLNRAE-DKFPRVETLIMESTYGATRQQSRREAEAE-LIKIVK 403
Query: 117 QTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
+T+ G VL+ V GR E+ +L N
Sbjct: 404 KTIERKGIVLIPVFAVGRGQEIMLVLNDAINN 435
>gi|50304897|ref|XP_452404.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74636942|sp|Q6CUI5.1|YSH1_KLULA RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|49641537|emb|CAH01255.1| KLLA0C04598p [Kluyveromyces lactis]
Length = 764
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTL-R 120
+++ D++ + +RHLN + +++ T + R+ ER +T ++ T+
Sbjct: 183 VLFTGDYSREVDRHLNSAEVPPQSSDVIIVESTFGTATHEPRQNR--ERKLTQLIHTVVS 240
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLWRN 148
G VL+ V GR E+ +L++ W+N
Sbjct: 241 KGGRVLLPVFALGRAQEIMLILDEYWQN 268
>gi|11498093|ref|NP_069318.1| mRNA 3'-end processing factor [Archaeoglobus fulgidus DSM 4304]
gi|2650146|gb|AAB90756.1| mRNA 3'-end processing factor, putative [Archaeoglobus fulgidus DSM
4304]
Length = 632
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ-----QARRRTRDE 109
+ EG I + DF +K R + + F R ++ M A Y Q R+ +E
Sbjct: 336 IGEGHYNIAFTGDFKFEKTRLFDRAATN-FPRLEALV---MEATYGGPNDFQPSRKEAEE 391
Query: 110 RLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
RL+ I +TL G VL+ GR E+ +LE+ R K
Sbjct: 392 RLIEVINRTLDRGGKVLIPTFAVGRSQEVMIVLEEAMREK 431
>gi|221059687|ref|XP_002260489.1| cleavage and polyadenylation specifity protein [Plasmodium knowlesi
strain H]
gi|193810562|emb|CAQ41756.1| cleavage and polyadenylation specifity protein,putative [Plasmodium
knowlesi strain H]
Length = 938
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 5/130 (3%)
Query: 17 KQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHL 76
K+ FHE + E+ + AY G +V+ +Y D++ + +RH+
Sbjct: 186 KRIETLNFHE----HIEFEDVKFTAYRAGHVIGACMFLVEINNIRFLYTGDYSREVDRHI 241
Query: 77 NGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVL 136
+ I V+I + I R+ R+ R + I L N G VL+ V GR
Sbjct: 242 PIAEIPT-IDVHVLICEGTYGIRVHDDRKKREVRFLNMITSILNNKGKVLLPVFALGRAQ 300
Query: 137 ELTHMLEQLW 146
EL ++E+ W
Sbjct: 301 ELLLIMEEHW 310
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,470,039,837
Number of Sequences: 23463169
Number of extensions: 95118088
Number of successful extensions: 216848
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 354
Number of HSP's that attempted gapping in prelim test: 215298
Number of HSP's gapped (non-prelim): 1313
length of query: 155
length of database: 8,064,228,071
effective HSP length: 117
effective length of query: 38
effective length of database: 9,614,004,594
effective search space: 365332174572
effective search space used: 365332174572
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 71 (32.0 bits)