BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13344
(155 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I7T|A Chain A, Structure Of Human Cpsf-73
pdb|2I7V|A Chain A, Structure Of Human Cpsf-73
Length = 459
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>pdb|2YCB|A Chain A, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
pdb|2YCB|B Chain B, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
Length = 636
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ--QARRRTRDERLM 112
+ +G+ +VY DF ++ R L +RF R ++ ++ ++ Q R ++ L+
Sbjct: 340 IGDGQHNMVYTGDFKYEQSRLLEAAA-NRFPRIETLVMESTYGGHEDVQPSRNRAEKELV 398
Query: 113 TNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
I TLR G +L+ V GR EL +LE+ R
Sbjct: 399 KTIYSTLRRGGKILIPVFAVGRAQELMIVLEEYIR 433
>pdb|3AF5|A Chain A, The Crystal Structure Of An Archaeal Cpsf Subunit, Ph1404
From Pyrococcus Horikoshii
pdb|3AF6|A Chain A, The Crystal Structure Of An Archaeal Cpsf Subunit, Ph1404
From Pyrococcus Horikoshii Complexed With Rna-Analog
Length = 651
Score = 29.6 bits (65), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 101 QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147
Q R ++RL+ I T++ G VL+ GR E+ +LE+ R
Sbjct: 402 QMPREEAEKRLIEVIHNTIKRGGKVLIPAMAVGRAQEVMMVLEEYAR 448
>pdb|2X3Y|A Chain A, Crystal Structure Of Gmha From Burkholderia Pseudomallei
pdb|2X3Y|B Chain B, Crystal Structure Of Gmha From Burkholderia Pseudomallei
pdb|2X3Y|C Chain C, Crystal Structure Of Gmha From Burkholderia Pseudomallei
pdb|2X3Y|D Chain D, Crystal Structure Of Gmha From Burkholderia Pseudomallei
pdb|2X3Y|E Chain E, Crystal Structure Of Gmha From Burkholderia Pseudomallei
pdb|2X3Y|F Chain F, Crystal Structure Of Gmha From Burkholderia Pseudomallei
pdb|2X3Y|G Chain G, Crystal Structure Of Gmha From Burkholderia Pseudomallei
pdb|2X3Y|H Chain H, Crystal Structure Of Gmha From Burkholderia Pseudomallei
Length = 219
Score = 29.6 bits (65), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFI-----RPTVVITDTMSAIYQQARRRTRDE 109
+ +G + ++ G + +H+ G + RF P V +T T ++I E
Sbjct: 66 IAQGGKVLLAGNGGSAADAQHIAGEFVSRFAFDRPGLPAVALT-TDTSILTAIGNDYGYE 124
Query: 110 RLMTNILQTLRNNGNVLVAVDTAGR 134
+L + +Q L N G+VL+ T+G+
Sbjct: 125 KLFSRQVQALGNEGDVLIGYSTSGK 149
>pdb|3JRR|A Chain A, Crystal Structure Of The Ligand Binding Suppressor Domain
Of Type 3 Inositol 1,4,5-Trisphosphate Receptor
pdb|3JRR|B Chain B, Crystal Structure Of The Ligand Binding Suppressor Domain
Of Type 3 Inositol 1,4,5-Trisphosphate Receptor
Length = 226
Score = 29.3 bits (64), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIV 63
++++ NK+ + + ++ D GN SW +F P WK+ G+ +V
Sbjct: 131 SNKYLTVNKRLPALLEKNAMRVTLDATGNEGSW-----LFIQPFWKLRSNGDNVVV 181
>pdb|2XBL|A Chain A, Crystal Structure Of Gmha From Burkholderia Pseudomallei
In Complex With Product
pdb|2XBL|B Chain B, Crystal Structure Of Gmha From Burkholderia Pseudomallei
In Complex With Product
pdb|2XBL|C Chain C, Crystal Structure Of Gmha From Burkholderia Pseudomallei
In Complex With Product
pdb|2XBL|D Chain D, Crystal Structure Of Gmha From Burkholderia Pseudomallei
In Complex With Product
Length = 198
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFI-----RPTVVITDTMSAIYQQARRRTRDE 109
+ +G + ++ G + +H+ G + RF P V +T T ++I E
Sbjct: 45 IAQGGKVLLAGNGGSAADAQHIAGEFVSRFAFDRPGLPAVALT-TDTSILTAIGNDYGYE 103
Query: 110 RLMTNILQTLRNNGNVLVAVDTAGR 134
+L + +Q L N G+VL+ T+G+
Sbjct: 104 KLFSRQVQALGNEGDVLIGYSTSGK 128
>pdb|2HM7|A Chain A, Crystal Structure Analysis Of The G84s Est2 Mutant
Length = 310
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 34 YGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRF 84
Y + SW G+ P+ +++ + +V+ VD+ L E V D +
Sbjct: 79 YYHGGSWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLAPEHKFPAAVEDAY 129
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 28.1 bits (61), Expect = 2.2, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 89 VVITDTMSAIYQQARRRT------RDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHML 142
VV+ ++Q +++ R ++++ I++T++N +V A TAG + L+H
Sbjct: 21 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 80
Query: 143 EQL 145
E L
Sbjct: 81 EGL 83
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 28.1 bits (61), Expect = 2.2, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 89 VVITDTMSAIYQQARRRT------RDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHML 142
VV+ ++Q +++ R ++++ I++T++N +V A TAG + L+H
Sbjct: 34 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 93
Query: 143 EQL 145
E L
Sbjct: 94 EGL 96
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 28.1 bits (61), Expect = 2.2, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 89 VVITDTMSAIYQQARRRT------RDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHML 142
VV+ ++Q +++ R ++++ I++T++N +V A TAG + L+H
Sbjct: 36 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 95
Query: 143 EQL 145
E L
Sbjct: 96 EGL 98
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 28.1 bits (61), Expect = 2.2, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 89 VVITDTMSAIYQQARRRT------RDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHML 142
VV+ ++Q +++ R ++++ I++T++N +V A TAG + L+H
Sbjct: 34 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 93
Query: 143 EQL 145
E L
Sbjct: 94 EGL 96
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 28.1 bits (61), Expect = 2.2, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 89 VVITDTMSAIYQQARRRT------RDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHML 142
VV+ ++Q +++ R ++++ I++T++N +V A TAG + L+H
Sbjct: 33 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 92
Query: 143 EQL 145
E L
Sbjct: 93 EGL 95
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 28.1 bits (61), Expect = 2.2, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 89 VVITDTMSAIYQQARRRT------RDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHML 142
VV+ ++Q +++ R ++++ I++T++N +V A TAG + L+H
Sbjct: 17 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 76
Query: 143 EQL 145
E L
Sbjct: 77 EGL 79
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 28.1 bits (61), Expect = 2.2, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 89 VVITDTMSAIYQQARRRT------RDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHML 142
VV+ ++Q +++ R ++++ I++T++N +V A TAG + L+H
Sbjct: 19 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 78
Query: 143 EQL 145
E L
Sbjct: 79 EGL 81
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 28.1 bits (61), Expect = 2.2, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 89 VVITDTMSAIYQQARRRT------RDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHML 142
VV+ ++Q +++ R ++++ I++T++N +V A TAG + L+H
Sbjct: 30 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 89
Query: 143 EQL 145
E L
Sbjct: 90 EGL 92
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 28.1 bits (61), Expect = 2.2, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 89 VVITDTMSAIYQQARRRT------RDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHML 142
VV+ ++Q +++ R ++++ I++T++N +V A TAG + L+H
Sbjct: 35 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 94
Query: 143 EQL 145
E L
Sbjct: 95 EGL 97
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 28.1 bits (61), Expect = 2.2, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 89 VVITDTMSAIYQQARRRT------RDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHML 142
VV+ ++Q +++ R ++++ I++T++N +V A TAG + L+H
Sbjct: 30 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 89
Query: 143 EQL 145
E L
Sbjct: 90 EGL 92
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 28.1 bits (61), Expect = 2.2, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 89 VVITDTMSAIYQQARRRT------RDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHML 142
VV+ ++Q +++ R ++++ I++T++N +V A TAG + L+H
Sbjct: 32 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 91
Query: 143 EQL 145
E L
Sbjct: 92 EGL 94
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 28.1 bits (61), Expect = 2.2, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 89 VVITDTMSAIYQQARRRT------RDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHML 142
VV+ ++Q +++ R ++++ I++T++N +V A TAG + L+H
Sbjct: 17 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 76
Query: 143 EQL 145
E L
Sbjct: 77 EGL 79
>pdb|2I7X|A Chain A, Structure Of Yeast Cpsf-100 (Ydh1p)
Length = 717
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 21 MFPFHETKIKYDEYG 35
MFPF+ KIK D+YG
Sbjct: 536 MFPFNPAKIKKDDYG 550
>pdb|3IZ6|F Chain F, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 200
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHML 142
ERL +++ RNNG ++AV +E+ H+L
Sbjct: 66 ERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLL 99
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 112 MTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
+ + Q +GN ++VD V L H+ + W+ SG+ S
Sbjct: 428 LESAFQKFDQDGNGKISVDELASVFGLDHLESKTWKEMISGIDS 471
>pdb|3L19|A Chain A, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
pdb|3L19|B Chain B, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
Length = 214
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 112 MTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS 155
+ + Q +GN ++VD V L H+ + W+ SG+ S
Sbjct: 145 LESAFQKFDQDGNGKISVDELASVFGLDHLESKTWKEMISGIDS 188
>pdb|1QZ3|A Chain A, Crystal Structure Of Mutant M211sR215L OF CARBOXYLESTERASE
Est2 Complexed With Hexadecanesulfonate
pdb|1U4N|A Chain A, Crystal Structure Analysis Of The M211sR215L EST2 MUTANT
Length = 310
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 34 YGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRF 84
Y + W G+ P+ +++ + +V+ VD+ L E V D +
Sbjct: 79 YYHGGGWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLAPEHKFPAAVEDAY 129
>pdb|1EVQ|A Chain A, The Crystal Structure Of The Thermophilic Carboxylesterase
Est2 From Alicyclobacillus Acidocaldarius
Length = 310
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 34 YGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRF 84
Y + W G+ P+ +++ + +V+ VD+ L E V D +
Sbjct: 79 YYHGGGWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLAPEHKFPAAVEDAY 129
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 89 VVITDTMSAIYQQARRRT------RDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHML 142
VV+ ++Q +++ R ++++ I++T++N +V A TAG + L+H
Sbjct: 29 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 88
Query: 143 EQLWRNKDSG 152
E L SG
Sbjct: 89 EGLLAIFKSG 98
>pdb|2ZKQ|GG Chain g, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 204
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHML 142
ERL +++ RNNG L+ V E+ H+L
Sbjct: 70 ERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLL 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,752,963
Number of Sequences: 62578
Number of extensions: 186081
Number of successful extensions: 462
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 449
Number of HSP's gapped (non-prelim): 38
length of query: 155
length of database: 14,973,337
effective HSP length: 91
effective length of query: 64
effective length of database: 9,278,739
effective search space: 593839296
effective search space used: 593839296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)