BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13344
(155 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9V3D6|CPSF2_DROME Probable cleavage and polyadenylation specificity factor subunit 2
OS=Drosophila melanogaster GN=Cpsf100 PE=1 SV=1
Length = 756
Score = 176 bits (445), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 86/137 (62%), Positives = 105/137 (76%), Gaps = 8/137 (5%)
Query: 27 TKIKYDEYGNHSSWAYGEEI--------FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNG 78
T++KY++ + YG I G IWKIVK GEE+IVY DFN KKERHL+G
Sbjct: 127 TQLKYNQTVSLKDKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSG 186
Query: 79 CVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLEL 138
C LDR RP+++ITD +A YQQARRR RDE+LMTNILQT+RNNGNVL+AVDTAGRVLEL
Sbjct: 187 CELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLEL 246
Query: 139 THMLEQLWRNKDSGLVS 155
HML+QLW+NK+SGL++
Sbjct: 247 AHMLDQLWKNKESGLMA 263
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 9/92 (9%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYG---NHSSWAYGEEIFTGPIWKIVKEGEEEIVY 64
+S FFKSNK+ MFP+HE K+K DEYG N + + TG + ++E +E V
Sbjct: 446 HSGFFKSNKRHHVMFPYHEEKVKCDEYGEIINLDDYRIADA--TGYEFVPMEEQNKENVK 503
Query: 65 GVDFNLKKERHLNGCVLDRFI----RPTVVIT 92
+ + E+ NG ++D + +PT +I+
Sbjct: 504 KEEPGIGAEQQANGGIVDNDVQLLEKPTKLIS 535
>sp|Q10568|CPSF2_BOVIN Cleavage and polyadenylation specificity factor subunit 2 OS=Bos
taurus GN=CPSF2 PE=1 SV=1
Length = 782
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 443 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 477
>sp|O35218|CPSF2_MOUSE Cleavage and polyadenylation specificity factor subunit 2 OS=Mus
musculus GN=Cpsf2 PE=1 SV=1
Length = 782
Score = 154 bits (390), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 443 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 477
>sp|Q9P2I0|CPSF2_HUMAN Cleavage and polyadenylation specificity factor subunit 2 OS=Homo
sapiens GN=CPSF2 PE=1 SV=2
Length = 782
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 89/108 (82%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
+ G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+
Sbjct: 154 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 213
Query: 106 TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
RDE+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 214 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 1 MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYG 35
M G FFK KK +PMFP E +IK+DEYG
Sbjct: 443 MKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYG 477
>sp|Q9W799|CPSF2_XENLA Cleavage and polyadenylation specificity factor subunit 2
OS=Xenopus laevis GN=cpsf2 PE=1 SV=1
Length = 783
Score = 153 bits (387), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 69/105 (65%), Positives = 88/105 (83%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+ RD
Sbjct: 157 GTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMINRPSLLITDSFNATYVQPRRKQRD 216
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
E+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 217 EQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 11 FFKSNKKQFPMFPFHETKIKYDEYG 35
FFK KK +PMFP E +IK+DEYG
Sbjct: 453 FFKQAKKSYPMFPAPEDRIKWDEYG 477
>sp|O17403|CPSF2_CAEEL Probable cleavage and polyadenylation specificity factor subunit 2
OS=Caenorhabditis elegans GN=cpsf-2 PE=3 SV=1
Length = 843
Score = 129 bits (325), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 85/130 (65%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
+++T + + G H + + G IW+I + E+IVY VDFN KKERHLNGC D
Sbjct: 131 YNQTVVLKGDSGVHFTALPAGHMLGGSIWRICRVTGEDIVYCVDFNHKKERHLNGCSFDN 190
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
F RP ++IT Q RR+ RDE+L+T IL+T+R G+ ++ +DTAGRVLEL H+L+
Sbjct: 191 FNRPHLLITGAHHISLPQMRRKDRDEQLVTKILRTVRQKGDCMIVIDTAGRVLELAHLLD 250
Query: 144 QLWRNKDSGL 153
QLW N D+GL
Sbjct: 251 QLWSNADAGL 260
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYG 35
+ FFK+ KK FPMFP+ E K+K+D+YG
Sbjct: 479 ASFFKTTKKSFPMFPYIEEKVKWDDYG 505
>sp|A8XUS3|CPSF2_CAEBR Probable cleavage and polyadenylation specificity factor subunit 2
OS=Caenorhabditis briggsae GN=cpsf-2 PE=3 SV=2
Length = 842
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 84/125 (67%), Gaps = 1/125 (0%)
Query: 29 IKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPT 88
+K D N ++ G I G +W+I + E+I+Y VDFN +K+RHL+GC D F RP
Sbjct: 137 LKGDSGVNFTAMPAGHMI-GGSMWRICRITGEDIIYCVDFNHRKDRHLSGCSFDNFNRPH 195
Query: 89 VVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
++IT Q +R+ RDE+L+T IL+T+R G+ ++ +DTAGRVLEL ++L+QLW N
Sbjct: 196 LLITGAHHISLPQMKRKDRDEQLVTKILRTVRQKGDCMIVIDTAGRVLELAYLLDQLWAN 255
Query: 149 KDSGL 153
+D+GL
Sbjct: 256 QDAGL 260
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYG 35
+ FFKS KK FPM+P+ E K+K+D+YG
Sbjct: 479 ASFFKSTKKSFPMYPYIEEKVKWDDYG 505
>sp|Q9LKF9|CPSF2_ARATH Cleavage and polyadenylation specificity factor subunit 2
OS=Arabidopsis thaliana GN=CPSF100 PE=1 SV=2
Length = 739
Score = 108 bits (271), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 71/105 (67%), Gaps = 2/105 (1%)
Query: 46 IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY-QQARR 104
+ G IW+I K+GE+ ++Y VD+N +KERHLNG VL F+RP V+ITD A+Y Q R
Sbjct: 154 MLGGSIWRITKDGED-VIYAVDYNHRKERHLNGTVLQSFVRPAVLITDAYHALYTNQTAR 212
Query: 105 RTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
+ RD+ + I + L GNVL+ VDTAGRVLEL +LEQ W +
Sbjct: 213 QQRDKEFLDTISKHLEVGGNVLLPVDTAGRVLELLLILEQHWSQR 257
>sp|Q652P4|CPSF2_ORYSJ Cleavage and polyadenylation specificity factor subunit 2 OS=Oryza
sativa subsp. japonica GN=Os09g0569400 PE=2 SV=1
Length = 738
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 79/133 (59%), Gaps = 13/133 (9%)
Query: 27 TKIKYDEYGNHSSWAYGEEIFTGP----------IWKIVKEGEEEIVYGVDFNLKKERHL 76
++KY + NH GE I P +WKI K+GE+ +VY VDFN +KERHL
Sbjct: 127 VRLKYSQ--NHLLNDKGEGIVIAPHVAGHDLGGTVWKITKDGED-VVYAVDFNHRKERHL 183
Query: 77 NGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVL 136
NG L F+RP V+ITD +A+ +R +D+ + +++ L G+VL+ +DTAGRVL
Sbjct: 184 NGTALGSFVRPAVLITDAYNALNNHVYKRQQDQDFIDALVKVLTGGGSVLLPIDTAGRVL 243
Query: 137 ELTHMLEQLWRNK 149
E+ +LEQ W +
Sbjct: 244 EILLILEQYWAQR 256
>sp|O74740|CFT2_SCHPO Cleavage factor two protein 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cft2 PE=1 SV=1
Length = 797
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 61/105 (58%), Gaps = 8/105 (7%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC-------VLDRFIRPTVVITDTMSAIYQQ 101
G +W ++KE E ++Y VD+N K++HLNG +L+ RP +ITD +++
Sbjct: 143 GTLWSLIKESES-VLYAVDWNHSKDKHLNGAALYSNGHILEALNRPNTLITDANNSLVSI 201
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
R+ RDE + +++ +L G VL+ VD A RVLEL +L+ W
Sbjct: 202 PSRKKRDEAFIESVMSSLLKGGTVLLPVDAASRVLELCCILDNHW 246
>sp|Q55BS1|CPSF2_DICDI Cleavage and polyadenylation specificity factor subunit 2
OS=Dictyostelium discoideum GN=cpsf2 PE=3 SV=1
Length = 784
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 65/109 (59%), Gaps = 5/109 (4%)
Query: 51 IWKIVKEGEEEIVYGVDFNLKKERHLNGCVL-DRFIRPTVVITDTMSAIYQQARRRT--R 107
+WKI K G IVY +D+N + E HL+ L ++P+++ITD+ A ++T R
Sbjct: 161 VWKITK-GTYSIVYAIDYNHRNEGHLDSLQLTSDILKPSLLITDSKGVDKTLAFKKTITR 219
Query: 108 DERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW-RNKDSGLVS 155
D+ L I + LR+ GNVL+ VDTAGRVLEL +E W +NK L S
Sbjct: 220 DQSLFEQINRNLRDGGNVLIPVDTAGRVLELLLCIENYWSKNKSLALYS 268
>sp|Q2YDM2|INT11_BOVIN Integrator complex subunit 11 OS=Bos taurus GN=CPSF3L PE=2 SV=2
Length = 599
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP+++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPSLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLWRNKD 150
V GR EL +LE W D
Sbjct: 238 PVFALGRAQELCILLETFWERMD 260
>sp|Q54YL3|INT11_DICDI Integrator complex subunit 11 homolog OS=Dictyostelium discoideum
GN=ints11 PE=3 SV=1
Length = 744
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 5/137 (3%)
Query: 16 KKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERH 75
KK P+ H+T IK DE + ++ G + G K G+E +VY D+N+ +RH
Sbjct: 130 KKVIPV-NLHQT-IKVDEELSIKAYYAGHVL--GAAMFYAKVGDESVVYTGDYNMTPDRH 185
Query: 76 LNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRV 135
L +D+ ++P V+IT+T A + +R R+ + I + + G VL+ V GRV
Sbjct: 186 LGSAWIDQ-VKPDVLITETTYATTIRDSKRGRERDFLKRIHECVEKGGKVLIPVFALGRV 244
Query: 136 LELTHMLEQLWRNKDSG 152
EL +++ W + G
Sbjct: 245 QELCILIDSYWEQMNLG 261
>sp|Q3MHC2|INT11_RAT Integrator complex subunit 11 OS=Rattus norvegicus GN=Cpsf3l PE=2
SV=1
Length = 600
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>sp|Q5TA45|INT11_HUMAN Integrator complex subunit 11 OS=Homo sapiens GN=CPSF3L PE=1 SV=2
Length = 600
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>sp|Q9CWS4|INT11_MOUSE Integrator complex subunit 11 OS=Mus musculus GN=Cpsf3l PE=2 SV=1
Length = 600
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>sp|Q5NVE6|INT11_PONAB Integrator complex subunit 11 OS=Pongo abelii GN=CPSF3L PE=2 SV=2
Length = 600
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>sp|Q5ZIH0|INT11_CHICK Integrator complex subunit 11 OS=Gallus gallus GN=CPSF3L PE=2 SV=1
Length = 600
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVD 67
S+ K K+ H+T ++ DE ++ Y + +++I K G E +VY D
Sbjct: 122 TSQMIKDCMKKVVAVHLHQT-VQVDEELEIKAY-YAGHVLGAAMFQI-KVGCESVVYTGD 178
Query: 68 FNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127
+N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 YNMTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLI 237
Query: 128 AVDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 238 PVFALGRAQELCILLETFW 256
>sp|Q503E1|INT11_DANRE Integrator complex subunit 11 OS=Danio rerio GN=cpsf3l PE=2 SV=1
Length = 598
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
+K G E +VY D+N+ +RHL +D+ RP ++I+++ A + +R R+ +
Sbjct: 166 IKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPDILISESTYATTIRDSKRCRERDFLKK 224
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ +T+ G VL+ V GR EL +LE W
Sbjct: 225 VHETVERGGKVLIPVFALGRAQELCILLETFW 256
>sp|Q9C952|CPSF3_ARATH Cleavage and polyadenylation specificity factor subunit 3-I
OS=Arabidopsis thaliana GN=CPSF73-I PE=1 SV=1
Length = 693
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 40 WAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99
W Y G +V I+Y D++ +++RHL L +F P + I ++ S +
Sbjct: 162 WCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRHLRAAELPQF-SPDICIIESTSGVQ 220
Query: 100 QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R R++R I T+ G VL+ GR EL +L++ W N
Sbjct: 221 LHQSRHIREKRFTDVIHSTVAQGGRVLIPAFALGRAQELLLILDEYWAN 269
>sp|O13794|YSH1_SCHPO Endoribonuclease ysh1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ysh1 PE=3 SV=2
Length = 757
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL+ + RP V+IT++ R ++ RL+ I T+RN
Sbjct: 181 ILFTGDYSREEDRHLHVAEVPP-KRPDVLITESTYGTASHQPRLEKEARLLNIIHSTIRN 239
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLWRN 148
G VL+ V GR EL +L++ W N
Sbjct: 240 GGRVLMPVFALGRAQELLLILDEYWNN 266
>sp|Q5BEP0|YSH1_EMENI Endoribonuclease ysh1 OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=ysh1 PE=3 SV=1
Length = 884
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + R ++ V+IT++ I R R+ LM +I L
Sbjct: 190 ILFTGDYSREEDRHLIPATVPRGVKIDVLITESTFGISSNPPRLEREAALMKSITGVLNR 249
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +LE+ W
Sbjct: 250 GGRVLMPVFALGRAQELLLILEEYW 274
>sp|P79101|CPSF3_BOVIN Cleavage and polyadenylation specificity factor subunit 3 OS=Bos
taurus GN=CPSF3 PE=2 SV=1
Length = 684
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>sp|Q9QXK7|CPSF3_MOUSE Cleavage and polyadenylation specificity factor subunit 3 OS=Mus
musculus GN=Cpsf3 PE=1 SV=2
Length = 684
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>sp|Q9UKF6|CPSF3_HUMAN Cleavage and polyadenylation specificity factor subunit 3 OS=Homo
sapiens GN=CPSF3 PE=1 SV=1
Length = 684
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>sp|Q8GUU3|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II
OS=Arabidopsis thaliana GN=CPSF73-II PE=1 SV=2
Length = 613
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 41 AYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ 100
AY G + K G+ IVY D+N+ +RHL +DR ++ ++I+++ A
Sbjct: 151 AYYAGHVLGAVMVYAKMGDAAIVYTGDYNMTTDRHLGAAKIDR-LQLDLLISESTYATTI 209
Query: 101 QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + R+ + + + + G L+ GR EL +L+ W
Sbjct: 210 RGSKYPREREFLQAVHKCVAGGGKALIPSFALGRAQELCMLLDDYW 255
>sp|Q4IPN9|YSH1_GIBZE Endoribonuclease YSH1 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=YSH1 PE=3 SV=2
Length = 833
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I + D++ +++RHL + + ++ V+IT++ I R R++ LM +I L
Sbjct: 190 IFFTGDYSREQDRHLVSAEVPKGVKIDVLITESTYGIASHVPRLEREQALMKSITSILNR 249
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 250 GGRVLMPVFALGRAQELLLILDEYW 274
>sp|Q8WZS6|YSH1_NEUCR Endoribonuclease ysh-1 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ysh-1
PE=3 SV=1
Length = 850
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I + D++ +++RHL + + ++ V+IT++ I R R++ LM +I L
Sbjct: 188 KIFFTGDYSREEDRHLISAKVPKGVKIDVLITESTYGIASHIPRPEREQALMKSITGILN 247
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 248 RGGRVLMPVFALGRAQELLLILDEYW 273
>sp|Q4WRC2|YSH1_ASPFU Endoribonuclease ysh1 OS=Neosartorya fumigata (strain ATCC MYA-4609
/ Af293 / CBS 101355 / FGSC A1100) GN=ysh1 PE=3 SV=1
Length = 872
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + + I+ V+IT++ I R R+ LM +I L
Sbjct: 191 ILFTGDYSREEDRHLIPAEVPKGIKIDVLITESTFGISTNPPRLEREAALMKSITGILNR 250
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYW 275
>sp|Q86A79|CPSF3_DICDI Cleavage and polyadenylation specificity factor subunit 3
OS=Dictyostelium discoideum GN=cpsf3 PE=3 SV=1
Length = 774
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I+Y DF+ +++RHL G ++ V+I ++ + R R++R +++ Q +
Sbjct: 200 KILYTGDFSRQEDRHLMGAETPP-VKVDVLIIESTYGVQVHEPRLEREKRFTSSVHQVVE 258
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
NG L+ V GR EL +L++ W
Sbjct: 259 RNGKCLIPVFALGRAQELLLILDEYW 284
>sp|Q6C2Z7|YSH1_YARLI Endoribonuclease YSH1 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=YSH1 PE=3 SV=2
Length = 827
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Query: 29 IKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPT 88
+K+ Y H+ G ++T ++ G ++++ D++ +++RHLN + ++P
Sbjct: 175 VKFTAY--HAGHVLGAAMYT------IEVGGVKVLFTGDYSREEDRHLNQAEVPP-MKPD 225
Query: 89 VVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
++I ++ R R++RL I TL G L+ V GR E+ +L++ W
Sbjct: 226 ILICESTYGTGTHLPRLEREQRLTGLIHSTLDKGGKCLLPVFALGRAQEILLILDEYW 283
>sp|Q6BMW3|YSH1_DEBHA Endoribonuclease YSH1 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=YSH1 PE=3
SV=2
Length = 815
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 41 AYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ 100
AY G ++ G ++++ D++ +++RHL + I+P ++IT++
Sbjct: 171 AYHAGHVLGACMYFIEIGGLKVLFTGDYSSEEDRHLQVAEVPP-IKPDILITESTFGTAT 229
Query: 101 QARRRTRDERLMTNILQ-TLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD 150
R ++ R MTNI+ TL G +L+ V GR EL +LE+ W D
Sbjct: 230 HEPRLEKETR-MTNIIHSTLLKGGRILMPVFALGRAQELLLILEEYWSLND 279
>sp|Q4PEJ3|YSH1_USTMA Endoribonuclease YSH1 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=YSH1 PE=3 SV=1
Length = 880
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I+Y DF+ +++RHL + ++P V+I ++ R ++ R + I ++
Sbjct: 190 ILYTGDFSREEDRHLVQAEIPP-VKPDVLICESTYGTQTHEPRLDKEHRFTSQIHHIIKR 248
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 249 GGRVLLPVFVLGRAQELLLLLDEYW 273
>sp|Q74ZC0|YSH1_ASHGO Endoribonuclease YSH1 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=YSH1 PE=3 SV=2
Length = 771
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 29 IKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPT 88
IK+ Y H+ G +F I + I++ D++ + +RHLN +
Sbjct: 155 IKFTAY--HAGHVLGAAMFQVEIAGL------RILFTGDYSRELDRHLNSAEIPTLPSDI 206
Query: 89 VVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+++ T + R +++++L I T+ G VL+ V GR E+ +L++ W
Sbjct: 207 LIVESTFGTATHEPRT-SKEKKLTQLIHTTVSKGGRVLLPVFALGRAQEIMLILDEYW 263
>sp|A0AK39|AROB_LISW6 3-dehydroquinate synthase OS=Listeria welshimeri serovar 6b (strain
ATCC 35897 / DSM 20650 / SLCC5334) GN=aroB PE=3 SV=1
Length = 365
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 32 DEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKK 72
+ YGN S W +GE I G I+ + E +YG+DFNL +
Sbjct: 254 EAYGNFSKWLHGEAITYGMIYALTM---SETIYGLDFNLAE 291
>sp|Q6CUI5|YSH1_KLULA Endoribonuclease YSH1 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=YSH1 PE=3 SV=1
Length = 764
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTL-R 120
+++ D++ + +RHLN + +++ T + R+ ER +T ++ T+
Sbjct: 183 VLFTGDYSREVDRHLNSAEVPPQSSDVIIVESTFGTATHEPRQNR--ERKLTQLIHTVVS 240
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLWRN 148
G VL+ V GR E+ +L++ W+N
Sbjct: 241 KGGRVLLPVFALGRAQEIMLILDEYWQN 268
>sp|Q6FUA5|YSH1_CANGA Endoribonuclease YSH1 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=YSH1 PE=3
SV=1
Length = 771
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
+++ D++ + +RHLN + +++ T + R R+++L I T+
Sbjct: 178 VLFTGDYSREIDRHLNSAEVPPLPSDILIVESTFGTATHEPRLH-REKKLTQLIHSTVNK 236
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +L++ W
Sbjct: 237 GGRVLMPVFALGRAQELMLILDEYW 261
>sp|Q92A81|AROB_LISIN 3-dehydroquinate synthase OS=Listeria innocua serovar 6a (strain
CLIP 11262) GN=aroB PE=3 SV=1
Length = 365
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 32 DEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKK 72
+ YGN W +GE I G I+ + E VYG+DF+L K
Sbjct: 254 EAYGNFGKWLHGEAITYGMIYALTM---SETVYGLDFDLAK 291
>sp|Q06224|YSH1_YEAST Endoribonuclease YSH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YSH1 PE=1 SV=1
Length = 779
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
+++ D++ + +RHLN + + V+I ++ R R+ +L I T+
Sbjct: 179 VLFTGDYSREVDRHLNSAEVPP-LSSNVLIVESTFGTATHEPRLNRERKLTQLIHSTVMR 237
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR E+ +L++ W
Sbjct: 238 GGRVLLPVFALGRAQEIMLILDEYW 262
>sp|Q8Y5X6|AROB_LISMO 3-dehydroquinate synthase OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=aroB PE=3 SV=1
Length = 365
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 32 DEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKK 72
+ YGN W +GE I G I+ + E +YG+DF+L +
Sbjct: 254 EAYGNFGKWLHGEAITYGMIYALTM---SETIYGLDFDLAE 291
>sp|Q71Y88|AROB_LISMF 3-dehydroquinate synthase OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=aroB PE=3 SV=1
Length = 365
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 32 DEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKK 72
+ YGN W +GE I G I+ + E +YG+DF+L +
Sbjct: 254 EAYGNFGKWLHGEAITYGMIYALTM---SETIYGLDFDLAE 291
>sp|C1KWM7|AROB_LISMC 3-dehydroquinate synthase OS=Listeria monocytogenes serotype 4b
(strain CLIP80459) GN=aroB PE=3 SV=1
Length = 365
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 32 DEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKK 72
+ YGN W +GE I G I+ + E +YG+DF+L +
Sbjct: 254 EAYGNFGKWLHGEAITYGMIYALTM---SETIYGLDFDLAE 291
>sp|B8DBZ9|AROB_LISMH 3-dehydroquinate synthase OS=Listeria monocytogenes serotype 4a
(strain HCC23) GN=aroB PE=3 SV=1
Length = 365
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 32 DEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKK 72
+ YGN W +GE I G I+ + E +YG+DF+L +
Sbjct: 254 EAYGNFGKWLHGEAITYGMIYALTM---SEAIYGLDFDLAE 291
>sp|Q8CSI3|Y1151_STAES UPF0302 protein SE_1151 OS=Staphylococcus epidermidis (strain ATCC
12228) GN=SE_1151 PE=3 SV=1
Length = 187
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 19/153 (12%)
Query: 11 FFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFN- 69
+ K+N+ + F +KI NH + E T ++ K+ + I FN
Sbjct: 33 YLKANQDKLNNVHFVNSKI-----NNHYTLEIAEVDATASAIQLSKDNKSYINTNQIFNY 87
Query: 70 -------LKKERHLNGCV-----LDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQ 117
L + H C LD I ++ + + S+ Q + D+R T I+Q
Sbjct: 88 IANHTLRLDIQIHFANCHIRESRLDDLILMQLIHSPSYSSYVQDLYSISMDKRKQTFIIQ 147
Query: 118 TLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD 150
TL+NN ++ + ++ +LT +L L ++KD
Sbjct: 148 TLQNNIDLSLQMNEPDYFYQLTQILNVL-KSKD 179
>sp|Q5HP81|Y1032_STAEQ UPF0302 protein SERP1032 OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=SERP1032 PE=3 SV=1
Length = 187
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 19/153 (12%)
Query: 11 FFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFN- 69
+ K+N+ + F +KI NH + E T ++ K+ + I FN
Sbjct: 33 YLKANQDKLNNVHFVNSKI-----NNHYTLEIAEVDATASAIQLSKDNKSYINTNQIFNY 87
Query: 70 -------LKKERHLNGCV-----LDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQ 117
L + H C LD I ++ + + S+ Q + D+R T I+Q
Sbjct: 88 IANHTLRLDIQIHFANCHIRESRLDDLILMQLIHSPSYSSYVQDLYSISMDKRKQTFIIQ 147
Query: 118 TLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD 150
TL+NN ++ + ++ +LT +L L ++KD
Sbjct: 148 TLQNNIDLSLQMNEPDYFYQLTQILNVL-KSKD 179
>sp|Q54SH0|INT9_DICDI Integrator complex subunit 9 homolog OS=Dictyostelium discoideum
GN=ints9 PE=3 SV=1
Length = 712
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 52 WKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERL 111
W I +G E +VY D +L R+ L P V+I ++ + E L
Sbjct: 260 WVIESKGFERVVYISDSSLSLSRYPTPFQLSPIDNPDVLILSKINHYPNNPPDQMLSE-L 318
Query: 112 MTNILQTLRNNGNVLVAVDTAGRVLELTHML 142
+NI TL+ G VL+ + G +L+L L
Sbjct: 319 CSNIGSTLQQGGTVLIPSYSCGIILDLFEHL 349
>sp|Q5L6D1|MNMA_CHLAB tRNA-specific 2-thiouridylase MnmA OS=Chlamydophila abortus (strain
S26/3) GN=mnmA PE=3 SV=1
Length = 362
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 65/154 (42%), Gaps = 26/154 (16%)
Query: 2 TGLCDANSRFFKSNKKQFPMFPFHETK-IKYDE---YGNHSSWAY-------GEEIFTG- 49
TG+C R FKS +QF P E + I YD GNH Y G +I
Sbjct: 193 TGICFIGKRPFKSFLEQF--VPNVEGEIIDYDSQKIVGNHEGAHYYTIGQRRGLDIGGSE 250
Query: 50 -PIWKIVKEGEEEIVY---GVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRR 105
P + + K+ E+ IVY G D L ++ L L+ F+ P ++++ + R R
Sbjct: 251 KPCYVVGKDMEKNIVYIVRGEDHPLLYQQELTAKELNWFVSP-----ESITRCSAKVRYR 305
Query: 106 TRDER---LMTNILQTLRNNGNVLVAVDTAGRVL 136
+ DE L T T+R V T G+ +
Sbjct: 306 SPDEECEILHTGTQDTVRVRFTSPVKAITPGQTI 339
>sp|Q8WN96|ITPR2_BOVIN Inositol 1,4,5-trisphosphate receptor type 2 OS=Bos taurus GN=ITPR2
PE=2 SV=1
Length = 2701
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYG 65
++++ NK+ + + ++ D GN SW Y P WK+ EG+ +V G
Sbjct: 128 SNKYLTVNKRLPALLEKNAMRVSLDAAGNEGSWFY-----IHPFWKLRSEGDNIVVGG 180
>sp|Q5UQA9|YR220_MIMIV Uncharacterized protein R220 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R220 PE=4 SV=1
Length = 340
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVIT------DTMSAIYQQARRRTRD 108
V EG+ ++++ V+ +K RH+N ++ PT VI DT I++Q T
Sbjct: 13 VLEGKTDVLF-VELLIKVNRHINSNRFNKNFNPTTVIKSQQSIFDTFKLIFEQLSIETDT 71
Query: 109 ERLMTNILQTLRNN 122
+ T I NN
Sbjct: 72 NEIFTEITSLTTNN 85
>sp|Q3ZY20|SYI_DEHSC Isoleucine--tRNA ligase OS=Dehalococcoides sp. (strain CBDB1)
GN=ileS PE=3 SV=1
Length = 1014
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 17 KQFPMFPFHETKIKYDEY-GNHSSWAYGEEIFTG---PIWKIVKEGEEEIVYGVDFNLKK 72
+Q +P H ++ ++ N+ WA+ E + G PIW+ K G+ E V G+D LK
Sbjct: 452 QQINWYPEHIKDGRFGDWLENNIDWAFSRERYWGTPVPIWRCEKCGQTECVGGID-ELKA 510
Query: 73 ERHLNG 78
+ + G
Sbjct: 511 KPNFKG 516
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,808,607
Number of Sequences: 539616
Number of extensions: 2285517
Number of successful extensions: 5520
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 5435
Number of HSP's gapped (non-prelim): 81
length of query: 155
length of database: 191,569,459
effective HSP length: 107
effective length of query: 48
effective length of database: 133,830,547
effective search space: 6423866256
effective search space used: 6423866256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)