Query psy13344
Match_columns 155
No_of_seqs 130 out of 1030
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 17:02:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13344.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13344hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iek_A Ribonuclease TTHA0252; 99.9 5.6E-24 1.9E-28 182.3 13.9 125 20-148 104-241 (431)
2 2i7t_A Cleavage and polyadenyl 99.9 1.9E-22 6.6E-27 173.1 13.3 128 19-149 120-260 (459)
3 2i7x_A Protein CFT2; polyadeny 99.8 2.3E-20 7.8E-25 169.2 12.7 125 20-146 117-265 (717)
4 3af5_A Putative uncharacterize 99.8 8.5E-20 2.9E-24 163.6 14.3 130 19-150 305-451 (651)
5 2ycb_A Beta-CAsp RNAse, cleava 99.8 6.7E-19 2.3E-23 157.3 13.9 130 19-150 290-436 (636)
6 2xr1_A Cleavage and polyadenyl 99.8 1.1E-18 3.8E-23 156.2 13.0 122 27-150 309-439 (640)
7 3zdk_A 5' exonuclease apollo; 99.6 4.2E-15 1.4E-19 124.1 11.5 116 27-145 71-198 (336)
8 4b87_A DNA cross-LINK repair 1 99.6 8.5E-15 2.9E-19 123.5 11.4 114 27-145 98-221 (367)
9 3zq4_A Ribonuclease J 1, RNAse 99.6 4E-15 1.4E-19 131.3 8.3 115 27-145 120-248 (555)
10 3bk2_A RNAse J, metal dependen 99.4 3.2E-12 1.1E-16 112.7 10.7 116 27-145 134-264 (562)
11 2az4_A Hypothetical protein EF 99.0 8E-10 2.7E-14 93.4 7.6 111 27-139 145-272 (429)
12 3g1p_A Protein PHNP; C-P lyase 97.2 0.00044 1.5E-08 54.1 5.5 100 28-135 122-227 (258)
13 2e7y_A TRNAse Z; tRNA maturati 97.1 0.0019 6.4E-08 50.3 8.0 33 59-99 182-214 (280)
14 1zkp_A Hypothetical protein BA 96.9 0.0025 8.6E-08 49.7 7.2 65 27-99 136-205 (268)
15 2cbn_A Ribonuclease Z; phospho 96.6 0.002 6.9E-08 51.0 4.8 36 58-99 204-239 (306)
16 1y44_A Ribonuclease Z; zinc-de 96.6 0.0021 7.3E-08 51.4 4.7 37 58-100 202-238 (320)
17 3kl7_A Putative metal-dependen 94.7 0.29 9.8E-06 37.7 10.0 59 27-95 108-183 (235)
18 3md7_A Beta-lactamase-like; ss 94.0 0.076 2.6E-06 42.0 5.4 63 27-98 165-235 (293)
19 3jxp_A Coenzyme PQQ synthesis 93.9 0.031 1E-06 45.6 2.9 65 27-98 140-227 (321)
20 1vjn_A Zn-dependent hydrolase 91.9 0.21 7.1E-06 38.2 4.9 70 50-133 107-176 (220)
21 3zwf_A Zinc phosphodiesterase 89.7 1 3.4E-05 37.1 7.3 38 59-100 243-280 (368)
22 1ej0_A FTSJ; methyltransferase 88.4 0.36 1.2E-05 33.6 3.3 63 86-148 88-155 (180)
23 2wyl_A L-ascorbate-6-phosphate 85.4 2.3 7.8E-05 34.5 7.0 41 50-95 210-250 (360)
24 3bv6_A Metal-dependent hydrola 84.7 2.9 0.0001 34.3 7.4 41 50-95 235-275 (379)
25 3dou_A Ribosomal RNA large sub 84.6 0.45 1.5E-05 35.3 2.2 62 86-147 91-157 (191)
26 3njr_A Precorrin-6Y methylase; 84.5 3 0.0001 30.8 6.8 50 85-145 121-170 (204)
27 2nyu_A Putative ribosomal RNA 84.4 0.72 2.5E-05 33.3 3.2 62 86-147 97-163 (196)
28 3m8t_A 'BLR6230 protein; subcl 83.5 5.9 0.0002 30.3 8.3 43 27-71 154-206 (294)
29 3evf_A RNA-directed RNA polyme 83.3 3.5 0.00012 33.2 7.0 63 85-148 139-205 (277)
30 3e05_A Precorrin-6Y C5,15-meth 83.2 3.9 0.00013 29.7 6.9 52 85-145 107-158 (204)
31 3rpc_A Possible metal-dependen 82.1 0.58 2E-05 36.3 1.9 43 50-96 151-193 (264)
32 2plw_A Ribosomal RNA methyltra 81.6 0.4 1.4E-05 34.9 0.8 61 86-146 106-171 (201)
33 3gcz_A Polyprotein; flavivirus 80.3 3.6 0.00012 33.2 6.1 64 85-149 155-223 (282)
34 1dus_A MJ0882; hypothetical pr 79.5 3.8 0.00013 28.8 5.5 58 85-147 118-175 (194)
35 3hm2_A Precorrin-6Y C5,15-meth 79.4 3.9 0.00013 28.6 5.5 51 85-145 93-143 (178)
36 2xyq_A Putative 2'-O-methyl tr 78.3 2.8 9.7E-05 33.6 4.9 61 85-145 122-187 (290)
37 3eld_A Methyltransferase; flav 75.9 6.6 0.00022 32.0 6.4 63 85-148 146-212 (300)
38 3lpm_A Putative methyltransfer 74.2 3 0.0001 31.9 3.9 59 85-144 118-190 (259)
39 2p41_A Type II methyltransfera 72.9 8 0.00027 30.8 6.3 63 85-148 147-212 (305)
40 1k07_A FEZ-1 beta-lactamase; m 72.7 27 0.00092 26.2 9.0 44 27-70 126-177 (263)
41 2oxt_A Nucleoside-2'-O-methylt 70.3 10 0.00034 29.6 6.2 59 85-145 139-200 (265)
42 1l3i_A Precorrin-6Y methyltran 69.9 5 0.00017 28.1 4.0 52 85-145 99-150 (192)
43 2hwk_A Helicase NSP2; rossman 69.9 1.3 4.4E-05 36.3 0.8 64 85-148 205-275 (320)
44 2nyg_A YOKD protein; PFAM02522 68.6 7.4 0.00025 31.1 5.1 47 84-132 27-73 (273)
45 2bib_A CBPE, teichoic acid pho 67.5 8.9 0.00031 32.7 5.7 39 50-92 186-226 (547)
46 3r24_A NSP16, 2'-O-methyl tran 66.4 1.9 6.6E-05 35.6 1.2 61 85-146 168-233 (344)
47 3esh_A Protein similar to meta 63.9 7.2 0.00024 30.0 4.1 41 31-72 167-211 (280)
48 2wa2_A Non-structural protein 62.2 14 0.00048 29.0 5.6 58 85-144 147-207 (276)
49 2px2_A Genome polyprotein [con 62.0 27 0.00092 27.9 7.1 60 85-147 138-203 (269)
50 3ijw_A Aminoglycoside N3-acety 61.8 11 0.00039 30.0 4.9 48 84-133 29-76 (268)
51 3sma_A FRBF; N-acetyl transfer 61.8 12 0.0004 30.3 5.0 47 84-132 36-82 (286)
52 1o9g_A RRNA methyltransferase; 61.0 12 0.0004 28.1 4.8 42 86-127 168-212 (250)
53 1yzh_A TRNA (guanine-N(7)-)-me 60.4 33 0.0011 24.8 7.1 59 86-144 111-171 (214)
54 3evz_A Methyltransferase; NYSG 60.3 8.4 0.00029 28.3 3.8 60 85-144 122-195 (230)
55 4efz_A Metallo-beta-lactamase 59.2 49 0.0017 25.5 8.3 44 27-70 124-177 (298)
56 3lkz_A Non-structural protein 56.6 81 0.0028 25.8 10.7 86 59-147 117-224 (321)
57 3tma_A Methyltransferase; thum 56.4 28 0.00096 27.7 6.5 46 86-131 272-319 (354)
58 2ozv_A Hypothetical protein AT 55.5 7.2 0.00025 29.9 2.7 60 85-145 114-185 (260)
59 2yxd_A Probable cobalt-precorr 54.6 29 0.001 23.8 5.7 49 85-145 99-147 (183)
60 3rhi_A DNA-binding protein HU; 53.6 12 0.00041 24.6 3.2 26 105-130 25-50 (93)
61 2fca_A TRNA (guanine-N(7)-)-me 53.1 29 0.00099 25.4 5.7 38 108-145 132-169 (213)
62 3adn_A Spermidine synthase; am 52.7 6.4 0.00022 31.3 2.0 61 85-147 156-220 (294)
63 1iy9_A Spermidine synthase; ro 52.3 4.6 0.00016 31.5 1.1 60 85-146 147-210 (275)
64 2r2d_A AGR_PTI_140P, Zn-depend 50.3 21 0.00071 26.9 4.6 45 27-72 167-218 (276)
65 3s4e_A Dual specificity protei 50.1 23 0.00079 24.3 4.5 33 105-137 64-97 (144)
66 3dtn_A Putative methyltransfer 49.4 24 0.00082 25.7 4.7 45 85-133 108-152 (234)
67 4dzr_A Protein-(glutamine-N5) 48.7 7.2 0.00025 27.9 1.6 59 85-143 100-178 (215)
68 2xf4_A Hydroxyacylglutathione 48.4 12 0.00042 27.0 2.9 42 27-70 109-154 (210)
69 3bwc_A Spermidine synthase; SA 47.5 11 0.00038 29.7 2.7 59 85-145 168-230 (304)
70 2o97_B NS1, HU-1, DNA-binding 47.3 17 0.00059 23.5 3.2 26 105-130 22-47 (90)
71 4gek_A TRNA (CMO5U34)-methyltr 46.9 36 0.0012 26.1 5.6 58 85-146 138-198 (261)
72 3hnr_A Probable methyltransfer 46.4 77 0.0026 22.5 7.4 41 85-129 105-145 (220)
73 1mul_A NS2, HU-2, DNA binding 46.3 18 0.00063 23.3 3.2 26 105-130 22-47 (90)
74 3dxy_A TRNA (guanine-N(7)-)-me 45.8 13 0.00043 27.8 2.7 36 109-144 130-165 (218)
75 2p18_A Glyoxalase II; metallop 45.7 21 0.00072 28.3 4.1 44 26-69 131-182 (311)
76 1b8z_A Protein (histonelike pr 45.1 20 0.00067 23.2 3.2 26 105-130 22-47 (90)
77 3c4i_A DNA-binding protein HU 44.9 19 0.00066 23.8 3.2 26 105-130 22-47 (99)
78 1p71_A DNA-binding protein HU; 44.8 20 0.00067 23.4 3.2 26 105-130 22-47 (94)
79 1owf_B IHF-beta, integration H 44.5 20 0.00069 23.3 3.2 26 105-130 23-48 (94)
80 1mjf_A Spermidine synthase; sp 44.3 14 0.00048 28.7 2.8 60 85-146 151-214 (281)
81 3s5j_B Ribose-phosphate pyroph 43.8 36 0.0012 27.7 5.2 46 83-134 47-96 (326)
82 1inl_A Spermidine synthase; be 43.4 9.7 0.00033 30.0 1.7 61 85-146 162-226 (296)
83 3q87_B N6 adenine specific DNA 43.2 56 0.0019 22.8 5.7 58 85-144 77-138 (170)
84 2pt6_A Spermidine synthase; tr 43.1 10 0.00034 30.4 1.8 59 85-145 188-250 (321)
85 2b2c_A Spermidine synthase; be 42.3 17 0.00058 29.0 3.0 60 85-146 180-243 (314)
86 2np2_A HBB; protein-DNA comple 41.9 24 0.00084 23.7 3.4 26 105-130 35-60 (108)
87 3eey_A Putative rRNA methylase 41.8 22 0.00074 25.3 3.3 47 85-131 92-141 (197)
88 3ezz_A Dual specificity protei 41.8 32 0.0011 23.4 4.1 33 106-138 65-98 (144)
89 1owf_A IHF-alpha, integration 41.2 24 0.00082 23.3 3.2 26 105-130 24-49 (99)
90 2hcm_A Dual specificity protei 41.0 56 0.0019 22.8 5.5 32 107-138 74-106 (164)
91 4a6d_A Hydroxyindole O-methylt 40.9 34 0.0012 27.4 4.7 39 85-127 243-281 (353)
92 3p9n_A Possible methyltransfer 40.4 38 0.0013 23.9 4.5 41 85-130 112-154 (189)
93 3dha_A N-acyl homoserine lacto 39.8 23 0.00078 26.4 3.3 27 46-72 173-200 (254)
94 3ldg_A Putative uncharacterize 39.5 81 0.0028 25.8 6.9 44 85-130 299-344 (384)
95 1ztc_A Hypothetical protein TM 39.4 39 0.0013 24.8 4.5 43 27-71 131-178 (221)
96 3tp9_A Beta-lactamase and rhod 39.3 34 0.0012 28.5 4.5 41 27-69 100-151 (474)
97 2e5n_A RNA polymerase II elong 39.2 11 0.00036 25.9 1.1 20 7-26 68-87 (100)
98 3mti_A RRNA methylase; SAM-dep 38.2 21 0.00072 25.0 2.7 46 86-131 89-137 (185)
99 1p9e_A Methyl parathion hydrol 38.0 37 0.0013 26.8 4.4 27 46-72 234-260 (331)
100 3hnn_A Putative diflavin flavo 37.3 30 0.001 26.2 3.6 40 27-68 130-175 (262)
101 1zx0_A Guanidinoacetate N-meth 37.2 19 0.00066 26.6 2.5 45 85-130 127-171 (236)
102 3cgg_A SAM-dependent methyltra 37.2 48 0.0016 22.8 4.5 56 85-144 106-164 (195)
103 1zzw_A Dual specificity protei 36.6 64 0.0022 22.0 5.1 34 106-139 67-101 (149)
104 2nt2_A Protein phosphatase sli 36.5 50 0.0017 22.5 4.5 32 107-138 66-98 (145)
105 2o07_A Spermidine synthase; st 36.5 24 0.00081 27.9 3.0 60 85-146 167-230 (304)
106 2esb_A Dual specificity protei 36.4 46 0.0016 24.1 4.4 32 107-138 82-114 (188)
107 4erc_A Dual specificity protei 36.0 69 0.0024 21.6 5.1 36 105-140 71-107 (150)
108 3ggd_A SAM-dependent methyltra 35.8 63 0.0022 23.6 5.2 42 87-132 125-166 (245)
109 3a27_A TYW2, uncharacterized p 35.1 21 0.0007 27.5 2.4 51 85-145 185-240 (272)
110 3emu_A Leucine rich repeat and 34.9 56 0.0019 23.0 4.6 31 106-136 71-102 (161)
111 3gjy_A Spermidine synthase; AP 34.2 42 0.0014 27.1 4.2 60 85-146 158-220 (317)
112 2gcu_A Putative hydroxyacylglu 33.9 32 0.0011 26.0 3.3 44 27-70 94-145 (245)
113 3rgo_A Protein-tyrosine phosph 33.6 69 0.0024 21.7 4.9 35 104-138 71-106 (157)
114 1yz4_A DUSP15, dual specificit 33.4 59 0.002 22.5 4.5 32 107-138 69-101 (160)
115 2i7c_A Spermidine synthase; tr 33.1 32 0.0011 26.7 3.2 59 85-145 150-212 (283)
116 2doa_A RNA polymerase II elong 33.0 14 0.00046 25.5 0.9 20 7-26 67-86 (104)
117 3ccf_A Cyclopropane-fatty-acyl 32.2 50 0.0017 24.8 4.2 55 85-145 116-170 (279)
118 2zo4_A Metallo-beta-lactamase 32.1 1.7E+02 0.0057 22.2 10.6 98 27-146 148-255 (317)
119 3grz_A L11 mtase, ribosomal pr 32.0 14 0.00048 26.5 0.9 51 85-144 124-174 (205)
120 3o4f_A Spermidine synthase; am 32.0 18 0.0006 29.1 1.5 60 85-146 156-219 (294)
121 2r0b_A Serine/threonine/tyrosi 32.0 44 0.0015 22.9 3.5 31 108-138 76-107 (154)
122 2hxp_A Dual specificity protei 31.8 51 0.0017 22.9 3.9 32 108-139 71-103 (155)
123 2j16_A SDP-1, tyrosine-protein 31.7 47 0.0016 24.3 3.8 33 106-138 101-134 (182)
124 2oud_A Dual specificity protei 31.2 82 0.0028 22.3 5.0 34 106-139 71-105 (177)
125 2nxc_A L11 mtase, ribosomal pr 30.9 70 0.0024 24.0 4.8 50 86-144 184-233 (254)
126 3aj3_A MLR6805 protein, 4-pyri 30.9 29 0.001 26.1 2.6 38 33-71 169-211 (274)
127 4ad9_A Lactb2, beta-lactamase- 30.6 32 0.0011 26.3 2.8 40 27-68 123-166 (289)
128 2yvl_A TRMI protein, hypotheti 30.6 25 0.00086 25.8 2.2 49 85-144 157-205 (248)
129 3k0b_A Predicted N6-adenine-sp 30.5 79 0.0027 25.9 5.4 44 85-130 306-351 (393)
130 2ld4_A Anamorsin; methyltransf 30.4 39 0.0013 23.4 3.1 38 85-127 62-99 (176)
131 1ws6_A Methyltransferase; stru 30.3 25 0.00087 23.9 2.0 40 86-131 110-149 (171)
132 3dp7_A SAM-dependent methyltra 30.2 92 0.0031 24.7 5.6 39 85-127 247-285 (363)
133 3l6n_A Metallo-beta-lactamase; 30.2 40 0.0014 24.3 3.2 39 27-69 115-160 (219)
134 3f81_A Dual specificity protei 29.9 72 0.0025 22.5 4.5 32 106-137 98-131 (183)
135 1i9g_A Hypothetical protein RV 29.7 30 0.001 26.1 2.5 49 85-144 170-218 (280)
136 2e0t_A Dual specificity phosph 29.6 76 0.0026 21.6 4.5 32 107-138 69-102 (151)
137 3sm3_A SAM-dependent methyltra 29.5 24 0.00082 25.4 1.8 44 85-131 100-143 (235)
138 3cm3_A Late protein H1, dual s 29.2 59 0.002 23.0 3.9 33 107-139 93-126 (176)
139 2g6z_A Dual specificity protei 29.1 66 0.0022 24.1 4.3 33 106-138 67-100 (211)
140 1xj5_A Spermidine synthase 1; 28.0 42 0.0014 26.9 3.2 41 86-128 194-234 (334)
141 2qfm_A Spermine synthase; sper 28.0 47 0.0016 27.5 3.5 61 85-146 266-330 (364)
142 1qh5_A Glyoxalase II, protein 28.0 44 0.0015 25.5 3.2 43 27-69 87-136 (260)
143 1exe_A Transcription factor 1; 27.6 21 0.00073 23.6 1.1 27 104-130 21-47 (99)
144 3fij_A LIN1909 protein; 11172J 27.1 1.3E+02 0.0043 22.8 5.7 54 85-142 60-124 (254)
145 1m2x_A Class B carbapenemase B 26.7 40 0.0014 24.5 2.7 40 27-70 111-157 (223)
146 3hem_A Cyclopropane-fatty-acyl 26.7 56 0.0019 24.9 3.6 47 85-131 136-185 (302)
147 2wgp_A Dual specificity protei 26.5 84 0.0029 22.7 4.4 32 107-138 88-120 (190)
148 3i53_A O-methyltransferase; CO 26.4 85 0.0029 24.4 4.7 39 86-128 235-273 (332)
149 3dah_A Ribose-phosphate pyroph 26.3 1.1E+02 0.0038 24.7 5.4 46 83-134 51-100 (319)
150 1uir_A Polyamine aminopropyltr 26.0 32 0.0011 27.1 2.1 45 85-129 150-195 (314)
151 3lcc_A Putative methyl chlorid 25.9 76 0.0026 23.0 4.1 42 86-131 132-173 (235)
152 1e5d_A Rubredoxin\:oxygen oxid 25.9 57 0.0019 26.0 3.6 41 27-69 122-167 (402)
153 2ipx_A RRNA 2'-O-methyltransfe 25.6 40 0.0014 24.7 2.5 39 85-131 146-184 (233)
154 4hl2_A Beta-lactamase NDM-1; s 25.5 32 0.0011 25.5 1.9 40 27-70 140-184 (243)
155 1xm8_A Glyoxalase II; structur 25.4 44 0.0015 25.4 2.8 42 27-70 89-134 (254)
156 1wrm_A Dual specificity phosph 25.3 94 0.0032 21.7 4.4 31 108-138 69-100 (165)
157 3r2u_A Metallo-beta-lactamase 25.3 72 0.0025 26.6 4.3 42 26-69 119-171 (466)
158 3jrn_A AT1G72930 protein; TIR 24.9 1.4E+02 0.0048 21.9 5.4 40 86-131 64-103 (176)
159 3ldu_A Putative methylase; str 24.9 1E+02 0.0035 25.1 5.0 44 85-130 300-345 (385)
160 3d2l_A SAM-dependent methyltra 24.7 52 0.0018 23.8 3.0 49 85-136 95-144 (243)
161 3ntv_A MW1564 protein; rossman 24.6 70 0.0024 23.5 3.7 34 85-127 141-174 (232)
162 3ofk_A Nodulation protein S; N 24.5 62 0.0021 23.0 3.3 44 85-131 113-156 (216)
163 3dli_A Methyltransferase; PSI- 24.4 81 0.0028 23.0 4.0 47 85-135 100-146 (240)
164 3e23_A Uncharacterized protein 24.2 53 0.0018 23.4 2.9 42 85-130 101-142 (211)
165 1ji0_A ABC transporter; ATP bi 24.0 2.3E+02 0.0077 21.1 7.3 44 85-133 156-200 (240)
166 3reo_A (ISO)eugenol O-methyltr 23.9 89 0.0031 24.9 4.5 37 87-127 262-298 (368)
167 1g8a_A Fibrillarin-like PRE-rR 23.8 42 0.0014 24.4 2.3 35 86-128 143-177 (227)
168 1g60_A Adenine-specific methyl 23.8 34 0.0012 26.1 1.8 45 85-129 22-74 (260)
169 3i9f_A Putative type 11 methyl 23.8 44 0.0015 22.9 2.3 40 85-130 74-113 (170)
170 2vw8_A PA1000, PQSE; quinolone 23.7 47 0.0016 25.5 2.7 41 27-69 137-182 (303)
171 2pwy_A TRNA (adenine-N(1)-)-me 23.5 30 0.001 25.5 1.4 48 85-143 165-212 (258)
172 1ve3_A Hypothetical protein PH 23.5 55 0.0019 23.4 2.9 43 85-131 102-144 (227)
173 3h2b_A SAM-dependent methyltra 23.4 69 0.0024 22.5 3.4 43 85-131 101-143 (203)
174 3p9c_A Caffeic acid O-methyltr 23.2 97 0.0033 24.7 4.6 38 87-128 260-297 (364)
175 2img_A Dual specificity protei 23.1 1.7E+02 0.0058 19.4 5.8 37 105-141 72-109 (151)
176 2ip2_A Probable phenazine-spec 22.9 1E+02 0.0035 23.8 4.6 39 86-128 233-271 (334)
177 3mb5_A SAM-dependent methyltra 22.8 48 0.0016 24.5 2.5 49 86-145 162-210 (255)
178 2fhx_A SPM-1; metallo-beta-lac 22.8 44 0.0015 24.5 2.3 40 29-70 143-187 (246)
179 2xvm_A Tellurite resistance pr 22.4 31 0.0011 24.1 1.3 40 85-128 96-135 (199)
180 2qm3_A Predicted methyltransfe 22.3 95 0.0033 24.9 4.3 34 86-126 241-274 (373)
181 2wvv_A Alpha-L-fucosidase; alp 22.1 90 0.0031 26.3 4.3 22 106-127 294-315 (450)
182 3ckk_A TRNA (guanine-N(7)-)-me 21.9 50 0.0017 24.8 2.4 36 109-144 148-183 (235)
183 3bxo_A N,N-dimethyltransferase 21.8 42 0.0014 24.2 1.9 41 85-128 99-140 (239)
184 1fbn_A MJ fibrillarin homologu 21.7 45 0.0015 24.5 2.1 36 85-128 142-177 (230)
185 3ou2_A SAM-dependent methyltra 21.7 49 0.0017 23.4 2.2 42 85-130 106-147 (218)
186 1vpl_A ABC transporter, ATP-bi 21.5 2.4E+02 0.0083 21.4 6.4 43 85-132 163-206 (256)
187 2qe6_A Uncharacterized protein 21.4 1.3E+02 0.0045 22.9 4.8 44 85-132 156-199 (274)
188 2o5h_A Hypothetical protein; a 21.2 1.1E+02 0.0039 21.8 4.0 48 102-149 46-95 (136)
189 3lst_A CALO1 methyltransferase 21.2 77 0.0026 24.9 3.5 38 86-127 247-284 (348)
190 1f2t_B RAD50 ABC-ATPase; DNA d 21.0 1.9E+02 0.0064 20.1 5.3 43 85-132 80-123 (148)
191 3thr_A Glycine N-methyltransfe 20.9 76 0.0026 23.8 3.3 51 85-135 129-181 (293)
192 1yb2_A Hypothetical protein TA 20.8 34 0.0012 26.0 1.3 47 86-143 179-225 (275)
193 1hru_A YRDC gene product; prot 20.7 98 0.0034 22.6 3.8 23 109-131 7-29 (188)
194 2gs9_A Hypothetical protein TT 20.6 65 0.0022 22.8 2.7 41 86-132 95-135 (211)
195 3id6_C Fibrillarin-like rRNA/T 20.5 70 0.0024 24.3 3.0 39 85-131 145-183 (232)
196 3duw_A OMT, O-methyltransferas 20.4 99 0.0034 22.1 3.8 34 86-128 133-166 (223)
197 4g1u_C Hemin import ATP-bindin 20.3 2.8E+02 0.0096 21.1 6.6 43 86-133 165-209 (266)
198 2yz2_A Putative ABC transporte 20.3 2.3E+02 0.0079 21.5 6.1 42 85-131 155-197 (266)
199 1fpz_A Cyclin-dependent kinase 20.3 1.2E+02 0.004 22.1 4.2 35 106-140 117-152 (212)
200 2avd_A Catechol-O-methyltransf 20.2 1.3E+02 0.0044 21.5 4.4 34 85-127 144-177 (229)
201 1k7j_A Protein YCIO, protein T 20.2 92 0.0032 23.2 3.6 22 110-131 15-36 (206)
202 2ex4_A Adrenal gland protein A 20.2 52 0.0018 24.1 2.1 39 86-128 146-184 (241)
203 2olj_A Amino acid ABC transpor 20.1 2.9E+02 0.01 21.0 7.3 45 85-134 176-221 (263)
204 2qed_A Hydroxyacylglutathione 20.0 56 0.0019 24.9 2.3 40 27-70 94-137 (258)
No 1
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Probab=99.91 E-value=5.6e-24 Score=182.28 Aligned_cols=125 Identities=17% Similarity=0.219 Sum_probs=108.4
Q ss_pred CCCCCCC--------ceecCCceeccCCCCceeE-----EecCceEEEEEeCceEEEEEeCCCCCCCCccCCCccCCCCC
Q psy13344 20 PMFPFHE--------TKIKYDEYGNHSSWAYGEE-----IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIR 86 (155)
Q Consensus 20 p~yt~~D--------~~v~Y~q~~~l~~~~~~vt-----~lGGa~~~i~~~~~~~IvytGD~~~~~~~~l~~~~l~~~~~ 86 (155)
|+|+.+| ++++|++++++. +++++ |..||+.+..+.++++|+||||++..++.++..+.. +.+
T Consensus 104 ~~y~~~~~~~~~~~~~~l~~~~~~~l~--g~~v~~~~agH~~Gs~~~~i~~~~~~ilfsGD~~~~~~~~l~~~~~--~~~ 179 (431)
T 3iek_A 104 PFFGPEDVEEALGHLRPLEYGEWLRLG--ALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSL--PPL 179 (431)
T ss_dssp CSSCHHHHHHHHHTEEECCTTCCEEET--TEEEEEEECCSSTTCEEEEEEETTEEEEECCCCCCTTSSSSCCCCB--CCC
T ss_pred CCCCHHHHHHHHhccEEcCCCCeEEeC--CEEEEEEeCCCCcCceEEEEEECCEEEEEeCCCCCCCCcccCCccc--cCC
Confidence 7788776 689999999995 57776 666665544445679999999999998998866643 368
Q ss_pred CcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHHHHh
Q psy13344 87 PTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148 (155)
Q Consensus 87 ~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~~~~ 148 (155)
+|+||+||||+++.|+++.+++++|.+.|.+++++||+||||+|++||+|||+++|+++|++
T Consensus 180 ~D~LI~EsTy~~~~h~~~~~~~~~l~~~i~~~~~~gg~vlIp~fa~gR~qell~~l~~~~~~ 241 (431)
T 3iek_A 180 ADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHR 241 (431)
T ss_dssp CSEEEEECTTTTCCCCCHHHHHHHHHHHHHHHHHTTCEEEEECCTTTHHHHHHHHHHHHGGG
T ss_pred ccEEEEEcccCCcCCCChHHHHHHHHHHHHHHHHcCCeEEEEeccchHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999965
No 2
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A
Probab=99.88 E-value=1.9e-22 Score=173.12 Aligned_cols=128 Identities=20% Similarity=0.374 Sum_probs=102.4
Q ss_pred CCCCCCCC--------ceecCCceeccCCCCceeE-----EecCceEEEEEeCceEEEEEeCCCCCCCCccCCCccCCCC
Q psy13344 19 FPMFPFHE--------TKIKYDEYGNHSSWAYGEE-----IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFI 85 (155)
Q Consensus 19 ~p~yt~~D--------~~v~Y~q~~~l~~~~~~vt-----~lGGa~~~i~~~~~~~IvytGD~~~~~~~~l~~~~l~~~~ 85 (155)
.++|+.+| ++++|++++++. +++++ |..||+.+..+.++++|+||||++..++.++.++.++. .
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--gi~v~~~~~GH~~Gs~~~~i~~~~~~il~sGD~~~~~~~~~~~~~~~~-~ 196 (459)
T 2i7t_A 120 DMLYTETDLEESMDKIETINFHEVKEVA--GIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-I 196 (459)
T ss_dssp --CCCHHHHHHHGGGEEEECTTCCEEET--TEEEEEEECCSSTTCEEEEEEETTEEEEECCSCCCC-----CCCCCCS-S
T ss_pred ccccCHHHHHHHHhccEEeCCCCEEEEC--CEEEEEEeCCCccCcEEEEEEECCcEEEEeCCCCCCCCcccCCCCcCC-C
Confidence 35676544 678999999986 56666 65555544443567899999999999888887766544 5
Q ss_pred CCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHHHHhh
Q psy13344 86 RPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149 (155)
Q Consensus 86 ~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~~~~~ 149 (155)
++|+||+||||+++.|+++.+++++|.+.|.+++++||+|+||+|++||+|||+++|+++|+++
T Consensus 197 ~~D~Li~Esty~~~~~~~~~~~~~~l~~~i~~~~~~~g~vlip~fa~gr~qell~~l~~~~~~~ 260 (459)
T 2i7t_A 197 KPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNH 260 (459)
T ss_dssp CCSEEEEECTTTTCCCCCHHHHHHHHHHHHHHHHHTTCEEEEECCSSSSHHHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCCCCCChHHHHHHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHHHHHHhc
Confidence 8999999999999999988899999999999999999999999999999999999999999764
No 3
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10
Probab=99.83 E-value=2.3e-20 Score=169.21 Aligned_cols=125 Identities=22% Similarity=0.375 Sum_probs=102.9
Q ss_pred CCCCCCC--------ceecCCceeccC--CCCceeE-----E-ecCceEEEEEeCceEEEEEeCCCCCCCCccCCCcc--
Q psy13344 20 PMFPFHE--------TKIKYDEYGNHS--SWAYGEE-----I-FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVL-- 81 (155)
Q Consensus 20 p~yt~~D--------~~v~Y~q~~~l~--~~~~~vt-----~-lGGa~~~i~~~~~~~IvytGD~~~~~~~~l~~~~l-- 81 (155)
|+|+..| ++++|++++++. ..+++++ | +|+++|.+. .++.+|+||||++..+++++.++++
T Consensus 117 ~~~~~~~v~~~~~~i~~l~~ge~i~l~~~~ggi~V~~~~aGHs~Gs~~~~I~-~~~~~IvytGD~~~~~~~~l~~~~~L~ 195 (717)
T 2i7x_A 117 NKLDLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCIS-TYSEKLVYAKRWNHTRDNILNAASILD 195 (717)
T ss_dssp CCSCHHHHHHHHHTSEEECTTCCEEETTTTTTEEEEEEECSSSTTCEEEEEE-CSSCEEEECSSCCSSCCSSCCCCTTBC
T ss_pred ccccHHHHHhhhhceEEecCCCEEEEeecCCCEEEEEECCCCCCCcEEEEEE-eCCCEEEEECCCCCCcccccCcccccc
Confidence 4666654 679999999982 1257776 5 455556665 4668999999999999998887653
Q ss_pred ------CCCCCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHHH
Q psy13344 82 ------DRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146 (155)
Q Consensus 82 ------~~~~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~~ 146 (155)
..+.++|+||+||||+.+.|+++ ++.++|.+.|.+++++||+||||+|++||+|||+++|.++|
T Consensus 196 ~~g~~l~~l~~~D~LI~EsTy~~~~h~~~-~~~~~l~~~i~~~l~~~G~VlIp~fa~gR~qell~~l~~~~ 265 (717)
T 2i7x_A 196 ATGKPLSTLMRPSAIITTLDRFGSSQPFK-KRSKIFKDTLKKGLSSDGSVIIPVDMSGKFLDLFTQVHELL 265 (717)
T ss_dssp TTSCBCSTTSSCSEEEECCSCCCCSSCHH-HHHHHHHHHHHHHTSTTCEEEEEECTTTHHHHHHHHHHHHH
T ss_pred ccchhHHhccCCcEEEEcCCCCCCCCCCH-HHHHHHHHHHHHHHhCCCeEEEEeccchHHHHHHHHHHHhh
Confidence 34568999999999999998765 46779999999999999999999999999999999999998
No 4
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=99.82 E-value=8.5e-20 Score=163.59 Aligned_cols=130 Identities=22% Similarity=0.279 Sum_probs=106.8
Q ss_pred CCCCCCCC--------ceecCCceeccCCCCceeE-----EecCceEEEEEeCce--EEEEEeCCCCCCCCccCCCccCC
Q psy13344 19 FPMFPFHE--------TKIKYDEYGNHSSWAYGEE-----IFTGPIWKIVKEGEE--EIVYGVDFNLKKERHLNGCVLDR 83 (155)
Q Consensus 19 ~p~yt~~D--------~~v~Y~q~~~l~~~~~~vt-----~lGGa~~~i~~~~~~--~IvytGD~~~~~~~~l~~~~l~~ 83 (155)
.+.|+.+| ++++|++++++. .+++++ |..||+.+....++. +|+||||++..+++++.+++.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~l~~g~~~~l~-ggi~v~~~~~gH~~Gs~~~~i~~~~~~~~ilftGD~~~~~~~ll~~~~~~- 382 (651)
T 3af5_A 305 DPLYRPRDIKEVIKHTITLDYGEVRDIS-PDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKFIPTRLLEPANAK- 382 (651)
T ss_dssp CCSSCHHHHHHHHHTEEECCTTCCEEEE-TTEEEEEEECSSSTTCEEEEEEETTTTTCEEECCSCCCSCCSSCCCCCCB-
T ss_pred CCCCCHHHHHHhhhcEEEeCCCCEEEec-CCEEEEEecCCCCcCcEEEEEEECCCceEEEEeCCCCCCccccccccccc-
Confidence 45676543 578999999993 256666 665665444434556 8999999999998888766443
Q ss_pred CCCCcEEEEcCCCCCcC--CCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHHHHhhc
Q psy13344 84 FIRPTVVITDTMSAIYQ--QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD 150 (155)
Q Consensus 84 ~~~~D~LI~EsTyg~~~--~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~~~~~~ 150 (155)
+.++|+||+||||+++. |+++.+..++|.+.|.+++++||+||||+||+||+|||+.+|+++|++++
T Consensus 383 ~~~~DvLI~EsT~~~~~~~h~s~~~~~~~l~~~i~~~l~~~g~vlIp~favgR~qell~~l~~~~~~~~ 451 (651)
T 3af5_A 383 FPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHNTIKRGGKVLIPAMAVGRAQEVMMVLEEYARIGG 451 (651)
T ss_dssp CSSCSEEEEECTTCSTTCCCCCHHHHHHHHHHHHHHHHHTTCEEEEECCTTTHHHHHHHHHHHHHTTTC
T ss_pred CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeccCccHHHHHHHHHHHhhhhcC
Confidence 36899999999999988 88888899999999999999999999999999999999999999997664
No 5
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.79 E-value=6.7e-19 Score=157.34 Aligned_cols=130 Identities=23% Similarity=0.320 Sum_probs=106.5
Q ss_pred CCCCCCCC--------ceecCCceeccCCCCceeE-----EecCceEEEEEeCce--EEEEEeCCCCCCCCccCCCccCC
Q psy13344 19 FPMFPFHE--------TKIKYDEYGNHSSWAYGEE-----IFTGPIWKIVKEGEE--EIVYGVDFNLKKERHLNGCVLDR 83 (155)
Q Consensus 19 ~p~yt~~D--------~~v~Y~q~~~l~~~~~~vt-----~lGGa~~~i~~~~~~--~IvytGD~~~~~~~~l~~~~l~~ 83 (155)
.+.|+..| +++.|++++++. .+++++ |+.||+.+....++. +|+||||++...++++.++...
T Consensus 290 ~~~~~~~~i~~~~~~~~~l~~g~~~~l~-ggi~v~~~~~gH~~Gs~~~~i~~~~~~~~ilftGD~~~~~~~ll~~~~~~- 367 (636)
T 2ycb_A 290 PLPFNVKHVKKSVKHTITLDYGEVTDIA-PDIRLTLHNAGHILGSAMAHLHIGDGQHNMVYTGDFKYEQSRLLEAAANR- 367 (636)
T ss_dssp CCSCCHHHHHHHHHTEEECCTTCCEEEE-TTEEEEEEECCSSTTCEEEEEEETTTTTCEEECCSCCSSCCSSSCCCCCC-
T ss_pred CCCCCHHHHHHHHhceEEeCCCCEEEec-CCeEEEEeCCCCCCCcEEEEEEECCCeEEEEEECCCCCCcccccCCcccC-
Confidence 35666543 568999999993 256665 766665544444556 8999999999988888776433
Q ss_pred CCCCcEEEEcCCCCCcC--CCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHHHHhhc
Q psy13344 84 FIRPTVVITDTMSAIYQ--QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD 150 (155)
Q Consensus 84 ~~~~D~LI~EsTyg~~~--~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~~~~~~ 150 (155)
+.++|+||+||||+++. |+++....++|.+.|.+++++||+||||+|++||+||++.+|+++|++++
T Consensus 368 ~~~~D~LI~EsT~~~~~~~h~s~~~~~~~l~~~i~~~~~~~g~vlIp~fa~GR~qell~~l~~~~~~~~ 436 (636)
T 2ycb_A 368 FPRIETLVMESTYGGHEDVQPSRNRAEKELVKTIYSTLRRGGKILIPVFAVGRAQELMIVLEEYIRTGI 436 (636)
T ss_dssp CSCCSEEEEECTTCSGGGCCCCHHHHHHHHHHHHHHHHHHTCCEEEECCTTTHHHHHHHHHHHHHHTTS
T ss_pred CCCCeEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEECCCcHHHHHHHHHHHHHHhCC
Confidence 36899999999999988 88888889999999999999999999999999999999999999998653
No 6
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=99.78 E-value=1.1e-18 Score=156.18 Aligned_cols=122 Identities=19% Similarity=0.257 Sum_probs=94.4
Q ss_pred ceecCCceeccCCCCceeE-----EecCceEEEEEeCce--EEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCCCCCc
Q psy13344 27 TKIKYDEYGNHSSWAYGEE-----IFTGPIWKIVKEGEE--EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99 (155)
Q Consensus 27 ~~v~Y~q~~~l~~~~~~vt-----~lGGa~~~i~~~~~~--~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsTyg~~ 99 (155)
+.+.|++++++. .+++++ |..||+.+....++. +|+||||++...++++.+++.+ ..++|+||+||||+++
T Consensus 309 ~~l~~g~~i~l~-gg~~v~~~~~GH~~Gs~~~~i~~~~~~~~ilftGD~~~~~~~ll~~~~~~-~~~~DvLi~EsT~g~~ 386 (640)
T 2xr1_A 309 IPLDYEEVTDIA-PDIKLTFHNAGHILGSAISHFHIGDGLHNVVFTGDYKYEKTRLFDPAVNK-FPRVETVISEATYGNA 386 (640)
T ss_dssp EECCTTCCEEEE-TTEEEEEEECSSSTTCEEEEEEETTTTEEEEECCSCCSSCCSSCCCCCCB-CSCCSEEEEECTTCST
T ss_pred EEeCCCCEEEec-CCEEEEEEcCCCCcCcEEEEEEECCceEEEEEECCCCCCCcccccccccc-CCCCcEEEECCCCCCC
Confidence 568999999983 256665 766665444444556 9999999999888888766443 3589999999999998
Q ss_pred C--CCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHHHHhhc
Q psy13344 100 Q--QARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKD 150 (155)
Q Consensus 100 ~--~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~~~~~~ 150 (155)
. |+++.+..++|.+.|.+++++||+|+||+|++||+||++..|++++++++
T Consensus 387 ~~~h~s~~~~~~~l~~~i~~~~~~~g~vlIp~favGR~qell~~l~~~~~~~~ 439 (640)
T 2xr1_A 387 NAFQPALKDAEKHLQMVVKNTIERGGIAVIPAFAVGRSQEVMIVLEESIRKGL 439 (640)
T ss_dssp TCCCCCHHHHHHHHHHHC--------CEEEECCTTTHHHHHHHHHHHHHHHTS
T ss_pred ccCCCCHHHHHHHHHHHHHHHHhcCCeEEEEecccchHHHHHHHHHHHHHhCC
Confidence 8 98888899999999999999999999999999999999999999998654
No 7
>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens}
Probab=99.60 E-value=4.2e-15 Score=124.09 Aligned_cols=116 Identities=11% Similarity=0.063 Sum_probs=85.6
Q ss_pred ceecCCceeccCC-----CCceeE-----EecCceEEEEEeCceEEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCCC
Q psy13344 27 TKIKYDEYGNHSS-----WAYGEE-----IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMS 96 (155)
Q Consensus 27 ~~v~Y~q~~~l~~-----~~~~vt-----~lGGa~~~i~~~~~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsTy 96 (155)
+++.+++++.+.+ .+++++ |+.||+.+..+.++.+|+||||++..++.+..+ .+....++|+||+||||
T Consensus 71 ~~~~~~~~~~i~~~~~~~g~~~v~~~~~~H~~gs~~~~i~~~~~~i~~tGD~~~~~~~~~~~-~l~~~~~vD~Li~DsT~ 149 (336)
T 3zdk_A 71 QALEVGESHVLPLDEIGQETMTVTLLDANHCPGSVMFLFEGYFGTILYTGDFRYTPSMLKEP-ALTLGKQIHTLYLDNTN 149 (336)
T ss_dssp EECCTTSEEEEESSSSSSCEEEEEEEECSSSTTCEEEEEEETTEEEEECCSCCCCGGGGGCG-GGSSCCCCSEEEECCTB
T ss_pred EecCCCCeEEecCcccccCCEEEEEEECCCCcceEEEEEEeCCceEEEeCCCCCCcccccch-hhhccCCccEEEEecCC
Confidence 5677778776521 246666 877777766655678999999998766554432 23234689999999999
Q ss_pred CCcCC--CChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHH
Q psy13344 97 AIYQQ--ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQL 145 (155)
Q Consensus 97 g~~~~--~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~ 145 (155)
+++.+ +++.+..+++.+.+.++ .||+|+||+|++||.|+++.+..++
T Consensus 150 ~~~~~~~pse~~v~~~l~~~i~~~--~~g~vii~~f~vgR~q~i~~~a~~~ 198 (336)
T 3zdk_A 150 CNPALVLPSRQEAAHQIVQLIRKH--PQHNIKIGLYSLGKESLLEQLALEF 198 (336)
T ss_dssp CCTTCCCCCHHHHHHHHHHHHHTC--TTSEEEEEECSSSCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhC--CCCcEEEeecchHHHHHHHHHHHHc
Confidence 99764 55666666777766654 4789999999999999999988754
No 8
>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens}
Probab=99.58 E-value=8.5e-15 Score=123.45 Aligned_cols=114 Identities=10% Similarity=0.047 Sum_probs=89.4
Q ss_pred ceecCCceeccCCCCceeE-----EecCceEEEEEe-CceEEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCCCCCcC
Q psy13344 27 TKIKYDEYGNHSSWAYGEE-----IFTGPIWKIVKE-GEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ 100 (155)
Q Consensus 27 ~~v~Y~q~~~l~~~~~~vt-----~lGGa~~~i~~~-~~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsTyg~~~ 100 (155)
+++++++++++. +++++ |..|++.+..+. ++++|+||||++..++... +.++. .++|+||+||||+++.
T Consensus 98 ~~l~~g~~~~ig--~~~v~~~~agH~~gs~~~~i~~~~g~~il~tGD~~~~~~~~~--~~l~~-~~~D~Li~EsTy~~~~ 172 (367)
T 4b87_A 98 HPLPLDTECIVN--GVKVVLLDANHCPGAVMILFYLPNGTVILHTGDFRADPSMER--SLLAD-QKVHMLYLDTTYCSPE 172 (367)
T ss_dssp EECCBTSCEEET--TEEEEEEECSSSTTCEEEEEECTTSCEEEECCSCCCCGGGGG--SGGGT-SCCCEEEECCTTCSTT
T ss_pred EEeCCCCEEEEC--CEEEEEEeCCCcCCcEEEEEEcCCCcEEEEecCcccCcccch--hhhcc-CCCCEEEEecccCCCC
Confidence 567888888886 46666 777777655543 5578999999998766543 34432 4799999999999964
Q ss_pred --CCChhHHHHHHHHHHHHHHhCCCeE--EEEecccHHHHHHHHHHHHH
Q psy13344 101 --QARRRTRDERLMTNILQTLRNNGNV--LVAVDTAGRVLELTHMLEQL 145 (155)
Q Consensus 101 --~~~~~~~~~~l~~~I~~tl~~gG~V--LIP~fa~GR~qEll~~L~~~ 145 (155)
++++++..+++++.+.++++++|++ ++|+|++||.|+++.+++++
T Consensus 173 ~~~ps~~~~~~~~~~~i~~~~~~~g~~~v~~~a~~igr~q~ll~ia~~~ 221 (367)
T 4b87_A 173 YTFPSQQEVIRFAINTAFEAVTLNPHALVVCGTYSIGKEKVFLAIADVL 221 (367)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHHh
Confidence 5677778888999999999877765 47999999999999998875
No 9
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}
Probab=99.57 E-value=4e-15 Score=131.30 Aligned_cols=115 Identities=15% Similarity=0.128 Sum_probs=90.4
Q ss_pred ceecCCceeccCCCCceeE-----E-ecCceEEEEEeCceEEEEEeCCCCCCCCccCCCccCCC-----CCCcEEEEcCC
Q psy13344 27 TKIKYDEYGNHSSWAYGEE-----I-FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRF-----IRPTVVITDTM 95 (155)
Q Consensus 27 ~~v~Y~q~~~l~~~~~~vt-----~-lGGa~~~i~~~~~~~IvytGD~~~~~~~~l~~~~l~~~-----~~~D~LI~EsT 95 (155)
+.+.+++++++. +++++ | +.||+.+..+.++.+|+||||+....+++..+++++.+ .++|+||+|||
T Consensus 120 ~~v~~g~~~~ig--~~~v~~~~~~H~~pgs~~~~i~~~~~~il~tGD~~~~~~~~~g~~d~~~l~~l~~~~~d~Li~esT 197 (555)
T 3zq4_A 120 NIIGEDDIVKFR--KTAVSFFRTTHSIPDSYGIVVKTPPGNIVHTGDFKFDFTPVGEPANLTKMAEIGKEGVLCLLSDST 197 (555)
T ss_dssp EECCTTCCEEET--TEEEEEEEEBCSSSSEEEEEEEETTEEEEECCSCBCCSSCSSSCCCHHHHHHHHHTCEEEEEEECT
T ss_pred EEeCCCCEEEEC--CEEEEEEeCCCCCcCcEEEEEEECCcEEEEeCCCCCCCCcCcCccCHHHHHHhcccCCcEEEecCc
Confidence 778899999886 46665 4 66665444444678999999999988877654554333 37899999999
Q ss_pred CCCcCCCChhHHHHHHHHHHHHHHhC-CCeEEEEecc--cHHHHHHHHHHHHH
Q psy13344 96 SAIYQQARRRTRDERLMTNILQTLRN-NGNVLVAVDT--AGRVLELTHMLEQL 145 (155)
Q Consensus 96 yg~~~~~~~~~~~~~l~~~I~~tl~~-gG~VLIP~fa--~GR~qEll~~L~~~ 145 (155)
|+.+.+. ...++++.+.+.+++++ +|+|+||+|| +||+||++..+.++
T Consensus 198 ~~~~~~~--~~se~~v~~~i~~~~~~~~grvii~~fasnv~R~q~il~~a~~~ 248 (555)
T 3zq4_A 198 NSENPEF--TMSERRVGESIHDIFRKVDGRIIFATFASNIHRLQQVIEAAVQN 248 (555)
T ss_dssp TTTCCSC--CCCHHHHHHHHHHHHHHCCSCEEEECCTTCHHHHHHHHHHHHTT
T ss_pred ccCCCCC--CCCHHHHHHHHHHHHHhCCCEEEEEEChhHHHHHHHHHHHHHHH
Confidence 9997543 34567888899999886 9999999999 99999999998764
No 10
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Probab=99.35 E-value=3.2e-12 Score=112.70 Aligned_cols=116 Identities=14% Similarity=0.107 Sum_probs=84.2
Q ss_pred ceecCCceeccCCCCceeE-----E-ecCceEEEEEeCceEEEEEeCCCCCCCCccC-CCccCCC-----CCCcEEEEcC
Q psy13344 27 TKIKYDEYGNHSSWAYGEE-----I-FTGPIWKIVKEGEEEIVYGVDFNLKKERHLN-GCVLDRF-----IRPTVVITDT 94 (155)
Q Consensus 27 ~~v~Y~q~~~l~~~~~~vt-----~-lGGa~~~i~~~~~~~IvytGD~~~~~~~~l~-~~~l~~~-----~~~D~LI~Es 94 (155)
+.+++++++++.+ +++++ | +.||+.+..+.++.+|+||||+....+++.. +.++..+ .++|+||+||
T Consensus 134 ~~v~~g~~~~lg~-~~~v~~~~~~H~~~gs~~~~i~~~~~~il~tGD~~~~~~~~~g~~~d~~~l~~~~~~~~d~Li~Es 212 (562)
T 3bk2_A 134 KEISPDDRIQVGR-YFTLDLFRMTHSIPDNSGVVIRTPIGTIVHTGDFKLDPTPIDGKVSHLAKVAQAGAEGVLLLIADA 212 (562)
T ss_dssp EEECTTCEEEETT-TEEEEEEECCCSSSSCEEEEEEETTEEEEECCSCCCCSSCTTSCCCCCHHHHHHHHHCCSEEEEEC
T ss_pred EEECCCCEEEeCC-CEEEEEEECCCCCcccEEEEEEECCeEEEEcCCCCCCCCCCCCCcccHHHHHHhhccCCCEEEecc
Confidence 7889999999872 36666 4 5555544443466899999999988777653 2332111 3799999999
Q ss_pred CCCCcCCCChhHHHHHHHHHHHHHHh-CCCeEEEEecc--cHHHHHHHHHHHHH
Q psy13344 95 MSAIYQQARRRTRDERLMTNILQTLR-NNGNVLVAVDT--AGRVLELTHMLEQL 145 (155)
Q Consensus 95 Tyg~~~~~~~~~~~~~l~~~I~~tl~-~gG~VLIP~fa--~GR~qEll~~L~~~ 145 (155)
||+.+.+.. ..+..+.+.+.++++ .+|+++||+|+ ++|+||++..+.++
T Consensus 213 T~~~~~g~~--~~e~~v~~~l~~~~~~~~grvii~~fas~~~r~q~il~~a~~~ 264 (562)
T 3bk2_A 213 TNAERPGYT--PSEMEIAKELDRVIGRAPGRVFVTTFASHIHRIQSVIWAAEKY 264 (562)
T ss_dssp TTTTCCSCC--CCHHHHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHT
T ss_pred cCCCCCCCC--ChHHHHHHHHHHHHHhCCCEEEEEEccccchHHHHHHHHHHHh
Confidence 999765432 233456667777765 68999999999 99999999988765
No 11
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10
Probab=98.98 E-value=8e-10 Score=93.36 Aligned_cols=111 Identities=10% Similarity=0.135 Sum_probs=76.2
Q ss_pred ceecCCceeccCCCCceeE-----E-ecCceEEEEEeCceEEEEEeCCCCCCCCccCCCcc-CCCCCCcEEEEcCCCCCc
Q psy13344 27 TKIKYDEYGNHSSWAYGEE-----I-FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVL-DRFIRPTVVITDTMSAIY 99 (155)
Q Consensus 27 ~~v~Y~q~~~l~~~~~~vt-----~-lGGa~~~i~~~~~~~IvytGD~~~~~~~~l~~~~l-~~~~~~D~LI~EsTyg~~ 99 (155)
+.+++++++++. +++++ | +.||+.+..+.++.+|+||||+.......-....+ ....++|+||+||||+.+
T Consensus 145 ~~~~~g~~~~~g--~~~v~~~~~~H~~~gs~~~~i~~~~~~i~~tGD~~~~~~~~~~~~~~~~~~~~~d~Li~Est~~~~ 222 (429)
T 2az4_A 145 IGLNKNDVIKVG--EISVEIVPVDHDAYGASALLIRTPDHFITYTGDLRLHGHNREETLAFCEKAKHTELLMMEGVSISF 222 (429)
T ss_dssp EEECTTCEEEET--TEEEEEEECCCSSTTCEEEEEEETTEEEEECCSCCSSSTTHHHHHHHHHHHTTCSEEEEECCGGGS
T ss_pred EEeCCCCeEEEC--CEEEEEEECCCCChhhEEEEEEeCCcEEEECCCcccCCCchHHHHHHHHhccCCCEEEECCCCcCc
Confidence 778899999887 46665 7 77666555545678999999998654331000000 112489999999999874
Q ss_pred C------CCChhHHHHHHHHHHHHHHhCC-CeEEEEecc---cHHHHHHH
Q psy13344 100 Q------QARRRTRDERLMTNILQTLRNN-GNVLVAVDT---AGRVLELT 139 (155)
Q Consensus 100 ~------~~~~~~~~~~l~~~I~~tl~~g-G~VLIP~fa---~GR~qEll 139 (155)
. +++...+.+++.+.+.++++++ ++++||.+. ++|+|+++
T Consensus 223 ~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~rlil~h~~~~~~~r~~~~a 272 (429)
T 2az4_A 223 PEREPDPAQIAVVSEEDLVQHLVRLELENPNRQITFNGYPANVERFAKII 272 (429)
T ss_dssp CCCCCCTTBCCCCSHHHHHHHHHHHHHTCSSSCEEEEECTTCHHHHHHHH
T ss_pred ccccccccCCCCCCHHHHHHHHHHHHHhCCCcEEEEEeccchHHHHHHHH
Confidence 3 1222345567778888887764 558999998 89999993
No 12
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A
Probab=97.22 E-value=0.00044 Score=54.14 Aligned_cols=100 Identities=7% Similarity=-0.030 Sum_probs=56.8
Q ss_pred eecCCceeccCCCCceeE-----EecCceEEEEEeCceEEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCCCCCcCCC
Q psy13344 28 KIKYDEYGNHSSWAYGEE-----IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQA 102 (155)
Q Consensus 28 ~v~Y~q~~~l~~~~~~vt-----~lGGa~~~i~~~~~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsTyg~~~~~ 102 (155)
.++.++.+++. +++++ |-.++..++.+.++++++|+||.+..++..+.-. .. .++|+||+|+||......
T Consensus 122 ~~~~g~~~~~g--~~~v~~~~~~H~~~~~g~~i~~~~~~i~~~GDt~~~~~~~~~~l--~~-~~~Dlli~e~t~~~~~~~ 196 (258)
T 3g1p_A 122 TVEPFVVFDLQ--GLQVTPLPLNHSKLTFGYLLETAHSRVAWLSDTAGLPEKTLKFL--RN-NQPQVMVMDCSHPPRADA 196 (258)
T ss_dssp ECCTTCCEEET--TEEEEEEECCSSSCCEEEEEECSSCEEEEECSCSSCCHHHHHHH--HH-TCCSEEEEECCBSSCSSC
T ss_pred ccCCCCeEEEC--CEEEEEEECCCCCCceEEEEEeCCcEEEEECCCCCCCHHHHHHH--Hh-CCCCEEEEeCCCCCcccc
Confidence 55666777776 46665 5455554444456789999999986654333211 10 479999999999764311
Q ss_pred C-hhHHHHHHHHHHHHHHhCCCeEEEEecccHHH
Q psy13344 103 R-RRTRDERLMTNILQTLRNNGNVLVAVDTAGRV 135 (155)
Q Consensus 103 ~-~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~ 135 (155)
. .....++..+.+++. +-+.+||+--.-+.
T Consensus 197 ~~~H~~~~~a~~~~~~~---~~k~lil~H~s~~~ 227 (258)
T 3g1p_A 197 PRNHCDLNTVLALNQVI---RSPRVILTHISHQF 227 (258)
T ss_dssp CSSSCBHHHHHHHHHHH---CCSCEEEESCCHHH
T ss_pred CCCCCCHHHHHHHHHHc---CCCEEEEECccCcc
Confidence 1 111222323333322 34556777655544
No 13
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A
Probab=97.08 E-value=0.0019 Score=50.29 Aligned_cols=33 Identities=6% Similarity=-0.114 Sum_probs=23.8
Q ss_pred ceEEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCCCCCc
Q psy13344 59 EEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99 (155)
Q Consensus 59 ~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsTyg~~ 99 (155)
+++|+|+||.+.. .. . ...++|+||+|+||.+.
T Consensus 182 g~~i~ysgDt~~~---~~---~--~~~~~d~li~e~t~~~~ 214 (280)
T 2e7y_A 182 KKVLTISGDSLAL---DP---E--EIRGTELLIHECTFLDA 214 (280)
T ss_dssp EEEEEECCSCSSC---CH---H--HHTTCSCEEEECCBC--
T ss_pred CCEEEEECCCChH---HH---H--hhcCCCEEEEeCCcCCh
Confidence 4789999998865 11 1 23579999999999865
No 14
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9
Probab=96.90 E-value=0.0025 Score=49.68 Aligned_cols=65 Identities=11% Similarity=0.022 Sum_probs=41.5
Q ss_pred ceecCCceeccCCCCceeE-----EecCceEEEEEeCceEEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCCCCCc
Q psy13344 27 TKIKYDEYGNHSSWAYGEE-----IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99 (155)
Q Consensus 27 ~~v~Y~q~~~l~~~~~~vt-----~lGGa~~~i~~~~~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsTyg~~ 99 (155)
..+.-++.+++. +++++ |-.|+..+....++++|+|+||....++ +. +...++|+||+|+||...
T Consensus 136 ~~~~~g~~~~~g--~~~v~~~~~~H~~~~~~~~i~~~~~~i~~~GD~~~~~~-~~-----~~~~~~d~li~e~~~~~~ 205 (268)
T 1zkp_A 136 IPYNPEETLQIG--PFSISFLKTVHPVTCFAMRITAGNDIVVYSADSSYIPE-FI-----PFTKDADLFICECNMYAH 205 (268)
T ss_dssp EECCTTSCEEET--TEEEEEEECCSSSCCEEEEEEETTEEEEECCSCCCCTT-HH-----HHHTTCSEEEEECCBCTT
T ss_pred EEecCCCeEEEC--CEEEEEEECCCCCCceEEEEEECCeEEEEeCCCCCCHH-HH-----HHHcCCCEEEEECCCCcc
Confidence 345556666665 45555 4444544444346689999999886432 11 112579999999999764
No 15
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7
Probab=96.63 E-value=0.002 Score=51.04 Aligned_cols=36 Identities=14% Similarity=-0.002 Sum_probs=26.9
Q ss_pred CceEEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCCCCCc
Q psy13344 58 GEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY 99 (155)
Q Consensus 58 ~~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsTyg~~ 99 (155)
++++|+|+||.+..+. +. +.+.++|+||+|+||++.
T Consensus 204 ~g~~i~~sgDt~~~~~-~~-----~~~~~~D~li~E~t~~~~ 239 (306)
T 2cbn_A 204 PGKALAIFGDTGPCDA-AL-----DLAKGVDVMVHEATLDIT 239 (306)
T ss_dssp CCCEEEECCSCBSCST-HH-----HHHTTCSEEEEECCBCGG
T ss_pred CCCEEEEeCCCCCHHH-HH-----HHhcCCCEEEEECcCChh
Confidence 4579999999986542 21 123579999999999874
No 16
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A*
Probab=96.58 E-value=0.0021 Score=51.37 Aligned_cols=37 Identities=11% Similarity=0.078 Sum_probs=27.3
Q ss_pred CceEEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCCCCCcC
Q psy13344 58 GEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ 100 (155)
Q Consensus 58 ~~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsTyg~~~ 100 (155)
++++|+|+||.+..+. +. +.+.++|+||+|+||++..
T Consensus 202 ~g~~i~~sgDt~~~~~-~~-----~~~~~~D~li~E~t~~~~~ 238 (320)
T 1y44_A 202 KGRSVVFSGDTRVSDK-LK-----ELARDCDVMVHEATFAKED 238 (320)
T ss_dssp CCCEEEECCSCBCCHH-HH-----HHTTTCSEEEEECCBCTTC
T ss_pred CCCEEEEeCCCCCHHH-HH-----HHhCCCCEEEEeccCCcch
Confidence 4579999999886542 22 1235899999999998753
No 17
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503}
Probab=94.71 E-value=0.29 Score=37.66 Aligned_cols=59 Identities=10% Similarity=-0.056 Sum_probs=40.0
Q ss_pred ceecCCc-eeccCCCCceeE-----Eec-----------CceEEEEEeCceEEEEEeCCCCCCCCccCCCccCCCCCCcE
Q psy13344 27 TKIKYDE-YGNHSSWAYGEE-----IFT-----------GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTV 89 (155)
Q Consensus 27 ~~v~Y~q-~~~l~~~~~~vt-----~lG-----------Ga~~~i~~~~~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~ 89 (155)
..+..++ .+++. +++|+ |-- +..|++.. ++++|+|+||.+..++ +..+.++|+
T Consensus 108 ~~l~~g~~~~~~g--~~~i~~~p~~H~~~~~~~~~~~~~~~g~~i~~-~g~~i~~~GDt~~~~~-------~~~l~~~Dv 177 (235)
T 3kl7_A 108 KVLKNGDTDTSIS--YMKIEAVPAYNTTPGRDKYHPRHRDNGYILTF-DGLRVYIAGDTEDIPE-------MKDLKDIDI 177 (235)
T ss_dssp EECCTTCEECCST--TCEEEEEECCCCSTTGGGTSCTTTSEEEEEEE-TTEEEEECCSCCSCGG-------GGGCCSCSE
T ss_pred EEecCCCEEEEEC--CEEEEEEEeecCCCccccccCCCCceEEEEEe-CCeEEEEECCCCchhh-------HHhhcCCCE
Confidence 4566677 77776 46666 211 35676664 6799999999876542 223457999
Q ss_pred EEEcCC
Q psy13344 90 VITDTM 95 (155)
Q Consensus 90 LI~EsT 95 (155)
+++++.
T Consensus 178 ~il~~~ 183 (235)
T 3kl7_A 178 AFLPVN 183 (235)
T ss_dssp EEEECC
T ss_pred EEECCC
Confidence 999985
No 18
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A*
Probab=94.03 E-value=0.076 Score=42.04 Aligned_cols=63 Identities=16% Similarity=0.028 Sum_probs=39.3
Q ss_pred ceecCCceeccCC--CCceeE-----Ee-cCceEEEEEeCceEEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCCCCC
Q psy13344 27 TKIKYDEYGNHSS--WAYGEE-----IF-TGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAI 98 (155)
Q Consensus 27 ~~v~Y~q~~~l~~--~~~~vt-----~l-GGa~~~i~~~~~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsTyg~ 98 (155)
+.++.++++++.+ ..++|+ |- .++..+... +++|+||.+..++.++. .+.++|+||+|+++..
T Consensus 165 ~~l~~g~~~~~g~~~~~~~v~~~~~~H~~~~~~g~~i~----~~~y~gDt~~~~~~~~~-----~~~~~Dlli~e~~~~~ 235 (293)
T 3md7_A 165 HDIAPETPFSIEGAGGAIRFEPFSQVHGDIESLGFRIG----SVVYCTDVSAFPEQSLQ-----YIKDADVLIIGALQYR 235 (293)
T ss_dssp EECCTTCCEEECCTTCCEEEEEEEEEETTEEEEEEEET----TEEEECSCSBCCGGGHH-----HHTTCSEEEEECCCSS
T ss_pred EEcCCCCcEEECCCCCcEEEEEEEecCCCCCEEEEEEe----EEEEECCCCCCCHHHHH-----HhcCCCEEEEeCccCC
Confidence 5666678888763 116666 43 234333331 79999998744333332 2358999999998644
No 19
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A
Probab=93.92 E-value=0.031 Score=45.58 Aligned_cols=65 Identities=8% Similarity=-0.003 Sum_probs=41.3
Q ss_pred ceecCCceecc---CCCCceeE---Ee---------------cCc-eEEEEE-eCceEEEEEeCCCCCCCCccCCCccCC
Q psy13344 27 TKIKYDEYGNH---SSWAYGEE---IF---------------TGP-IWKIVK-EGEEEIVYGVDFNLKKERHLNGCVLDR 83 (155)
Q Consensus 27 ~~v~Y~q~~~l---~~~~~~vt---~l---------------GGa-~~~i~~-~~~~~IvytGD~~~~~~~~l~~~~l~~ 83 (155)
+.+.-++++++ . +++|+ .- +.+ .+.+.. .++++|+|+||.+..++.++ +.
T Consensus 140 ~~i~~g~~~~i~~~~--~~~V~~~~v~H~~~~~~~H~~~~~~~~~~Gy~i~~~~~g~~i~y~~Dt~~~~~~~~-----~~ 212 (321)
T 3jxp_A 140 NRIELEGSFVIDACP--NLKFTPFPLRSAAPPYSPHRFDPHPGDNLGLMVEDTRTGGKLFYAPGLGQVDEKLL-----AM 212 (321)
T ss_dssp EECCSSSCEECTTST--TEEEEEEEECCCCCTTCTTTTSCCTTSEEEEEEEETTTCCEEEEESSCCCCCHHHH-----HH
T ss_pred EEcCCCCeEEeccCC--CeEEEEEEecCCccccccccccccCCCcEEEEEEecCCCcEEEEECCCCCCCHHHH-----HH
Confidence 45556777777 4 56776 21 223 355542 46799999999875433322 12
Q ss_pred CCCCcEEEEcCCCCC
Q psy13344 84 FIRPTVVITDTMSAI 98 (155)
Q Consensus 84 ~~~~D~LI~EsTyg~ 98 (155)
+.++|+||+|+|+..
T Consensus 213 ~~~~D~li~eat~~~ 227 (321)
T 3jxp_A 213 MHGADCLLVDGTLWE 227 (321)
T ss_dssp HHHCSEEEEECCCSS
T ss_pred hcCCCEEEEeCCCCC
Confidence 357999999998754
No 20
>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4
Probab=91.93 E-value=0.21 Score=38.19 Aligned_cols=70 Identities=7% Similarity=0.006 Sum_probs=39.8
Q ss_pred ceEEEEEeCceEEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEe
Q psy13344 50 PIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAV 129 (155)
Q Consensus 50 a~~~i~~~~~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~ 129 (155)
.+|.+. .++++|+|+||.+..+..-+ +..+.++|++|+|+. ...|..-+ ...++++. + +-+.+||+
T Consensus 107 ~g~~i~-~~g~~i~~~GDt~~~~~~~~----~~~~~~~Dvlil~~g--~~~h~~~~-~a~~~~~~----~--~~k~vi~~ 172 (220)
T 1vjn_A 107 IVFVFE-GEGIKVCHLGDLGHVLTPAQ----VEEIGEIDVLLVPVG--GTYTIGPK-EAKEVADL----L--NAKVIIPM 172 (220)
T ss_dssp EEEEEE-ETTEEEEECTTCCSCCCHHH----HHHHCCCSEEEEECC--SSSSCCHH-HHHHHHHH----T--TCSEEEEE
T ss_pred EEEEEE-ECCeEEEEeCCCCCcchHHH----HHhhCCCCEEEEcCC--CcCcCCHH-HHHHHHHh----c--CCCEEEEE
Confidence 446555 46799999999887653111 122347999999983 23333222 22233332 2 45778887
Q ss_pred cccH
Q psy13344 130 DTAG 133 (155)
Q Consensus 130 fa~G 133 (155)
--..
T Consensus 173 H~~~ 176 (220)
T 1vjn_A 173 HYKT 176 (220)
T ss_dssp SCCC
T ss_pred eccc
Confidence 5433
No 21
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens}
Probab=89.65 E-value=1 Score=37.10 Aligned_cols=38 Identities=11% Similarity=-0.095 Sum_probs=25.0
Q ss_pred ceEEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCCCCCcC
Q psy13344 59 EEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQ 100 (155)
Q Consensus 59 ~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsTyg~~~ 100 (155)
+++|+|+||-... .. ..-.+...++|+||+|+||.+..
T Consensus 243 g~~v~~~GDT~~~---~~-~~~~~~~~~~Dlli~Eat~~~~~ 280 (368)
T 3zwf_A 243 GRKICILGDCSGV---VG-DGGVKLCFEADLLIHEATLDDAQ 280 (368)
T ss_dssp CCEEEEECSCSEE---CS-SHHHHHTTTCSEEEEECCSCGGG
T ss_pred ceEEEEEecCCcc---cc-hhHHHHhcCCCEEEEecCCChHH
Confidence 6899999994421 01 11112246899999999998743
No 22
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=88.43 E-value=0.36 Score=33.59 Aligned_cols=63 Identities=16% Similarity=0.141 Sum_probs=46.4
Q ss_pred CCcEEEEcCCCCCcCCCChhH-----HHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHHHHh
Q psy13344 86 RPTVVITDTMSAIYQQARRRT-----RDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148 (155)
Q Consensus 86 ~~D~LI~EsTyg~~~~~~~~~-----~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~~~~ 148 (155)
..|++++...+....+..... ....+++.+.+.|+.||.+++-.+.....++++..+..+|+.
T Consensus 88 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~ 155 (180)
T 1ej0_A 88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTK 155 (180)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHHEEE
T ss_pred ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHHhhhh
Confidence 679999977654332221111 126788889999999999999888888889998888887643
No 23
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A*
Probab=85.44 E-value=2.3 Score=34.53 Aligned_cols=41 Identities=7% Similarity=-0.044 Sum_probs=25.1
Q ss_pred ceEEEEEeCceEEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCC
Q psy13344 50 PIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTM 95 (155)
Q Consensus 50 a~~~i~~~~~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsT 95 (155)
..|++. .++++|+|+||....++...-+ .. .++|++++...
T Consensus 210 ~g~~i~-~~g~~i~~sGDt~~~~~~~~i~---~~-~~~Dv~il~~g 250 (360)
T 2wyl_A 210 VNYLFK-TPGGSLYHSGDSHYSNYYAKHG---NE-HQIDVALGSYG 250 (360)
T ss_dssp EEEEEE-ETTEEEEECTTCCCCTTHHHHH---HH-SCCCEEEEEBC
T ss_pred EEEEEE-ECCcEEEEeCCCCcCHHHHHHh---hC-CCCCEEEecCC
Confidence 345555 4679999999987654321100 01 26899998654
No 24
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor}
Probab=84.73 E-value=2.9 Score=34.26 Aligned_cols=41 Identities=10% Similarity=0.002 Sum_probs=25.3
Q ss_pred ceEEEEEeCceEEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCC
Q psy13344 50 PIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTM 95 (155)
Q Consensus 50 a~~~i~~~~~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsT 95 (155)
..|++. .++++|+|+||....++...-. .. .++|++++...
T Consensus 235 ~g~~i~-~~g~~i~~sGDt~~~~~~~~i~---~~-~~~Dv~il~~g 275 (379)
T 3bv6_A 235 VNYLIE-TSGGSVYHSGDSHYSNYYAKHG---ND-YQIDVALLSYG 275 (379)
T ss_dssp EEEEEE-ETTEEEEECTTCCCCTTHHHHH---HH-SCCSEEEEEBC
T ss_pred EEEEEE-eCCeEEEEeCCCCccHHHHHHh---hc-CCCCEEEecCC
Confidence 445555 4679999999988654321100 01 26899998654
No 25
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=84.65 E-value=0.45 Score=35.34 Aligned_cols=62 Identities=21% Similarity=0.297 Sum_probs=43.5
Q ss_pred CCcEEEEcCCCCCcCCCCh-----hHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHHHH
Q psy13344 86 RPTVVITDTMSAIYQQARR-----RTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147 (155)
Q Consensus 86 ~~D~LI~EsTyg~~~~~~~-----~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~~~ 147 (155)
..|+++.+.......+... ....+..++.+.+.|+.||+.++-+|.....++++..|..+|.
T Consensus 91 ~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~F~ 157 (191)
T 3dou_A 91 KVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKNFS 157 (191)
T ss_dssp SEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGGEE
T ss_pred cceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHhcC
Confidence 6899999764322211111 1223456677788999999999999999998999888876653
No 26
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=84.52 E-value=3 Score=30.82 Aligned_cols=50 Identities=14% Similarity=0.108 Sum_probs=40.2
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQL 145 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~ 145 (155)
...|++++.... . .. +++.+.+.|+.||.+++-+.......+++..|.+.
T Consensus 121 ~~~D~v~~~~~~---------~-~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~ 170 (204)
T 3njr_A 121 PLPEAVFIGGGG---------S-QA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARH 170 (204)
T ss_dssp CCCSEEEECSCC---------C-HH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCcc---------c-HH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhC
Confidence 468999976622 1 23 88889999999999999999999999988888764
No 27
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=84.37 E-value=0.72 Score=33.28 Aligned_cols=62 Identities=15% Similarity=0.152 Sum_probs=43.1
Q ss_pred CCcEEEEcCCCCCcCCCChh-----HHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHHHH
Q psy13344 86 RPTVVITDTMSAIYQQARRR-----TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147 (155)
Q Consensus 86 ~~D~LI~EsTyg~~~~~~~~-----~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~~~ 147 (155)
..|+++++.......+.... .....+++.+.+.|+.||.+++-.+......+++..+...+.
T Consensus 97 ~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~ 163 (196)
T 2nyu_A 97 RADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQ 163 (196)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHHHEE
T ss_pred CCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHHHhc
Confidence 68999986533222221111 112467888899999999999999988888888888877654
No 28
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A
Probab=83.50 E-value=5.9 Score=30.33 Aligned_cols=43 Identities=7% Similarity=-0.089 Sum_probs=26.7
Q ss_pred ceecCCceeccCCCCceeE------EecCceEEEEEeCce----EEEEEeCCCCC
Q psy13344 27 TKIKYDEYGNHSSWAYGEE------IFTGPIWKIVKEGEE----EIVYGVDFNLK 71 (155)
Q Consensus 27 ~~v~Y~q~~~l~~~~~~vt------~lGGa~~~i~~~~~~----~IvytGD~~~~ 71 (155)
+.+.-++.+++. +.+++ |-.|++.+....++. +++|+||....
T Consensus 154 ~~~~~g~~~~~g--~~~i~~~~~pgHt~g~~~~~~~~~~~~~~~~~lf~GD~~~~ 206 (294)
T 3m8t_A 154 RAVKEGDRVTLG--DTTLTAHATPGHSPGCTSWEMTVKDGKEDREVLFFCSGTVA 206 (294)
T ss_dssp EEECTTCEEEET--TEEEEEEECCSSSTTCEEEEEEEEETTEEEEEEECCCCCCT
T ss_pred eEeCCCCEEEeC--CEEEEEEeCCCCCccCEEEEEEccCCCccceEEEEcCccCC
Confidence 567777888877 34444 555555544322223 79999998743
No 29
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=83.31 E-value=3.5 Score=33.17 Aligned_cols=63 Identities=17% Similarity=0.211 Sum_probs=47.1
Q ss_pred CCCcEEEEcCCCCCcCCCCh-hHHHHHHHHHHHHHHhCC-CeEEEEecc--cHHHHHHHHHHHHHHHh
Q psy13344 85 IRPTVVITDTMSAIYQQARR-RTRDERLMTNILQTLRNN-GNVLVAVDT--AGRVLELTHMLEQLWRN 148 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~-~~~~~~l~~~I~~tl~~g-G~VLIP~fa--~GR~qEll~~L~~~~~~ 148 (155)
..+|+++.+-.-- .-+... ..+.-.|++.+.++|+.| |+.++=+|. -+-.+|++..|..+|..
T Consensus 139 ~~~DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~~F~~ 205 (277)
T 3evf_A 139 VKCDTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRRFGG 205 (277)
T ss_dssp CCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCC
T ss_pred CCccEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHHhcCC
Confidence 4689999975433 222211 122235688899999999 999999999 88999999999999865
No 30
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=83.20 E-value=3.9 Score=29.66 Aligned_cols=52 Identities=15% Similarity=0.229 Sum_probs=40.8
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQL 145 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~ 145 (155)
...|++++..... ...++++.+.+.|+.||.+++-........++...|.+.
T Consensus 107 ~~~D~i~~~~~~~---------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~ 158 (204)
T 3e05_A 107 PDPDRVFIGGSGG---------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDH 158 (204)
T ss_dssp CCCSEEEESCCTT---------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHT
T ss_pred CCCCEEEECCCCc---------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHC
Confidence 4689999877553 234788889999999999999888878888877777643
No 31
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula}
Probab=82.06 E-value=0.58 Score=36.26 Aligned_cols=43 Identities=14% Similarity=-0.058 Sum_probs=27.1
Q ss_pred ceEEEEEeCceEEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCCC
Q psy13344 50 PIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMS 96 (155)
Q Consensus 50 a~~~i~~~~~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsTy 96 (155)
+.|++...++++|+|+||-+..++.. .+....++|++|+++..
T Consensus 151 ~g~~i~~~~~~~i~~~GDt~~~~~~~----~~~~~~~~Dv~il~~g~ 193 (264)
T 3rpc_A 151 MGVIFEAADEPTVYLVGDTVWTSDVE----KALLRFDPNVIIMNTGY 193 (264)
T ss_dssp CEEEEECTTSCCEEECCSCCSCHHHH----HHHHHHCCSEEEEECSC
T ss_pred EEEEEEeCCccEEEEECCcCchHHHH----HHHHHhCCCEEEEecCc
Confidence 45666642268999999987654311 00000258999999974
No 32
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=81.65 E-value=0.4 Score=34.88 Aligned_cols=61 Identities=10% Similarity=0.159 Sum_probs=41.2
Q ss_pred CCcEEEEcCCCCCcCC--CChh---HHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHHH
Q psy13344 86 RPTVVITDTMSAIYQQ--ARRR---TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146 (155)
Q Consensus 86 ~~D~LI~EsTyg~~~~--~~~~---~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~~ 146 (155)
..|+++++........ .+.. .....++..+.+.|+.||.+++.++.....++++..|..+|
T Consensus 106 ~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~~f 171 (201)
T 2plw_A 106 KIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGMF 171 (201)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHTTE
T ss_pred cccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHHHH
Confidence 6799998764322111 0011 11234777888999999999998888777888888777654
No 33
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=80.26 E-value=3.6 Score=33.20 Aligned_cols=64 Identities=14% Similarity=0.083 Sum_probs=48.4
Q ss_pred CCCcEEEEcCCCCCcCCCCh-hHHHHHHHHHHHHHHhCC--CeEEEEecc--cHHHHHHHHHHHHHHHhh
Q psy13344 85 IRPTVVITDTMSAIYQQARR-RTRDERLMTNILQTLRNN--GNVLVAVDT--AGRVLELTHMLEQLWRNK 149 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~-~~~~~~l~~~I~~tl~~g--G~VLIP~fa--~GR~qEll~~L~~~~~~~ 149 (155)
.++|+++.+-.-- +-+... ..+.-.|++...++|+.| |+.++=+|. -+-.+|++..|..+|..-
T Consensus 155 ~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk~~F~~V 223 (282)
T 3gcz_A 155 IPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQLKHGGG 223 (282)
T ss_dssp CCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHHHHHCCE
T ss_pred CCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHHHhcCCE
Confidence 5789999986543 222211 123335788889999999 999999999 889999999999998653
No 34
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=79.53 E-value=3.8 Score=28.81 Aligned_cols=58 Identities=16% Similarity=0.264 Sum_probs=44.7
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWR 147 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~~~ 147 (155)
...|++++...|.. . ......+++.+.+.|+.||.+++-........++...|.+.+.
T Consensus 118 ~~~D~v~~~~~~~~----~-~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~~~ 175 (194)
T 1dus_A 118 RKYNKIITNPPIRA----G-KEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFG 175 (194)
T ss_dssp SCEEEEEECCCSTT----C-HHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHS
T ss_pred CCceEEEECCCccc----c-hhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHHhc
Confidence 36799998765532 1 2445678899999999999999988887777778888887764
No 35
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=79.38 E-value=3.9 Score=28.62 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=38.8
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQL 145 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~ 145 (155)
...|++++...... ..+++.+.+.|+.||.+++-.+......++...+.++
T Consensus 93 ~~~D~i~~~~~~~~----------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~ 143 (178)
T 3hm2_A 93 DNPDVIFIGGGLTA----------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQF 143 (178)
T ss_dssp SCCSEEEECC-TTC----------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCcccH----------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHc
Confidence 46899997654432 5678888899999999999888887777777776654
No 36
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=78.30 E-value=2.8 Score=33.58 Aligned_cols=61 Identities=15% Similarity=0.156 Sum_probs=43.1
Q ss_pred CCCcEEEEcCCC---CCc--CCCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMS---AIY--QQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQL 145 (155)
Q Consensus 85 ~~~D~LI~EsTy---g~~--~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~ 145 (155)
...|+++.+... |.. .+....+-.+++++.+.+.|+.||.+++.++..++.+|+...|.++
T Consensus 122 ~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~ 187 (290)
T 2xyq_A 122 NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHF 187 (290)
T ss_dssp SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTE
T ss_pred CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHc
Confidence 357999986421 111 1111123345788889999999999999999989999988887654
No 37
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=75.88 E-value=6.6 Score=31.98 Aligned_cols=63 Identities=17% Similarity=0.132 Sum_probs=48.0
Q ss_pred CCCcEEEEcCCCCCcCCCCh-hHHHHHHHHHHHHHHhCC-CeEEEEecc--cHHHHHHHHHHHHHHHh
Q psy13344 85 IRPTVVITDTMSAIYQQARR-RTRDERLMTNILQTLRNN-GNVLVAVDT--AGRVLELTHMLEQLWRN 148 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~-~~~~~~l~~~I~~tl~~g-G~VLIP~fa--~GR~qEll~~L~~~~~~ 148 (155)
..+|+++.+-.-- +-++.. ..+...|++...++|+.| |+-++=+|. -+-.++++..|..+|..
T Consensus 146 ~~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~lk~~F~~ 212 (300)
T 3eld_A 146 EPSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQLRFGG 212 (300)
T ss_dssp CCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHHHHHHHCC
T ss_pred CCcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHHHHHHhCCc
Confidence 4689999975433 222211 223356788889999999 999999999 99999999999999865
No 38
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=74.20 E-value=3 Score=31.86 Aligned_cols=59 Identities=14% Similarity=0.172 Sum_probs=40.3
Q ss_pred CCCcEEEEcCCCCCcC-----CC-C-h-------hHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQ-----QA-R-R-------RTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQ 144 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~-----~~-~-~-------~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~ 144 (155)
...|++|++..|.... .+ . + ....+.+++.+.+.|+.||.+++ +....+..|++..+.+
T Consensus 118 ~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~~~~~l~~ 190 (259)
T 3lpm_A 118 ERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANF-VHRPERLLDIIDIMRK 190 (259)
T ss_dssp TCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEE-EECTTTHHHHHHHHHH
T ss_pred CCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEE-EEcHHHHHHHHHHHHH
Confidence 4689999987774430 00 0 0 12346789999999999999988 5666788888877765
No 39
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=72.89 E-value=8 Score=30.84 Aligned_cols=63 Identities=19% Similarity=0.159 Sum_probs=41.8
Q ss_pred CCCcEEEEcCCCCCcCCCCh-hHHHHHHHHHHHHHHhCCCeEEEEeccc--HHHHHHHHHHHHHHHh
Q psy13344 85 IRPTVVITDTMSAIYQQARR-RTRDERLMTNILQTLRNNGNVLVAVDTA--GRVLELTHMLEQLWRN 148 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~-~~~~~~l~~~I~~tl~~gG~VLIP~fa~--GR~qEll~~L~~~~~~ 148 (155)
...|+++++...- ..+... ..+.-..+..+.+.|+.||..++-+|.- .-..+++..+...|..
T Consensus 147 ~~fD~V~sd~~~~-~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~~~~~~~~~l~~l~~~f~~ 212 (305)
T 2p41_A 147 ERCDTLLCDIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRKHGG 212 (305)
T ss_dssp CCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHHHCC
T ss_pred CCCCEEEECCccc-cCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCchHHHHHHHHHHHcCC
Confidence 3689999986542 122111 1111145677889999999999987766 5667888888777654
No 40
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A
Probab=72.69 E-value=27 Score=26.22 Aligned_cols=44 Identities=9% Similarity=-0.142 Sum_probs=26.3
Q ss_pred ceecCCceeccCCCCceeE----EecCceEEEEEeC--c--eEEEEEeCCCC
Q psy13344 27 TKIKYDEYGNHSSWAYGEE----IFTGPIWKIVKEG--E--EEIVYGVDFNL 70 (155)
Q Consensus 27 ~~v~Y~q~~~l~~~~~~vt----~lGGa~~~i~~~~--~--~~IvytGD~~~ 70 (155)
..+.-++.+.+.+..+++. |--|++.+..... + .+++|+||+..
T Consensus 126 ~~~~~g~~~~~g~~~i~~i~~pGHt~g~~~~~~~~~~~~~~~~~lf~GD~~~ 177 (263)
T 1k07_A 126 KVLHDGERVELGGTVLTAHLTPGHTRGCTTWTMKLKDHGKQYQAVIIGSIGV 177 (263)
T ss_dssp EEECTTCEEEETTEEEEEEECCSSSTTCEEEEEEEEETTEEEEEEEECCCCC
T ss_pred eEeCCCCEEEECCeEEEEEECCCCCCCcEEEEEecccCCceeEEEEECCccc
Confidence 5667777777763223332 5455555444321 3 37999999865
No 41
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=70.33 E-value=10 Score=29.62 Aligned_cols=59 Identities=15% Similarity=0.117 Sum_probs=36.2
Q ss_pred CCCcEEEEcCCCCCcCCCChh-HHHHHHHHHHHHHHhCCC--eEEEEecccHHHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQQARRR-TRDERLMTNILQTLRNNG--NVLVAVDTAGRVLELTHMLEQL 145 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~-~~~~~l~~~I~~tl~~gG--~VLIP~fa~GR~qEll~~L~~~ 145 (155)
...|+++++.. ....++..+ .+.-.+++.+.++|+.|| ..++-+|. ....+++..+..+
T Consensus 139 ~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~-~~~~~~~~~l~~l 200 (265)
T 2oxt_A 139 ERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC-PYSVEVMERLSVM 200 (265)
T ss_dssp CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC-TTSHHHHHHHHHH
T ss_pred CCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC-CCChhHHHHHHHH
Confidence 36899999865 222221111 111126788889999999 99998887 5556444444443
No 42
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=69.93 E-value=5 Score=28.09 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=38.7
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQL 145 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~ 145 (155)
...|++++..... ....+++.+.+.|+.||.+++-.+......++...+.+.
T Consensus 99 ~~~D~v~~~~~~~---------~~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~ 150 (192)
T 1l3i_A 99 PDIDIAVVGGSGG---------ELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDL 150 (192)
T ss_dssp CCEEEEEESCCTT---------CHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHT
T ss_pred CCCCEEEECCchH---------HHHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHC
Confidence 3689999865432 126788888999999999999877777777777666543
No 43
>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}
Probab=69.89 E-value=1.3 Score=36.32 Aligned_cols=64 Identities=5% Similarity=0.016 Sum_probs=46.4
Q ss_pred CCCcEEEEcCCCCCcCCC-----ChhHHHHHHHHHHHHHHhCCCeEEEEecccH--HHHHHHHHHHHHHHh
Q psy13344 85 IRPTVVITDTMSAIYQQA-----RRRTRDERLMTNILQTLRNNGNVLVAVDTAG--RVLELTHMLEQLWRN 148 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~-----~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~G--R~qEll~~L~~~~~~ 148 (155)
.++|+++.+-.--.+.|. ++......+.+...+.|+.||+.++=+|..| ..++|+..|.+.+++
T Consensus 205 ~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~KvyggaDr~se~lv~~LaR~F~~ 275 (320)
T 2hwk_A 205 PKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRASESIIGAIARQFKF 275 (320)
T ss_dssp CCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTTEEE
T ss_pred CcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCCcccHHHHHHHHHHhcce
Confidence 579999998754444443 1122233466666788899999999999999 889998888876654
No 44
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=68.55 E-value=7.4 Score=31.07 Aligned_cols=47 Identities=4% Similarity=0.177 Sum_probs=36.2
Q ss_pred CCCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEeccc
Q psy13344 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTA 132 (155)
Q Consensus 84 ~~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~ 132 (155)
+..-|+|++-|.+..--.. ....+.+++++.+++-..|++++|+|..
T Consensus 27 I~~Gd~llVHsSl~~lG~v--~gg~~~vi~AL~~~vg~~GTLvmPtft~ 73 (273)
T 2nyg_A 27 LKKGMTVLVHSSLSSIGWV--NGGAVAVIQALIDVVTEEGTIVMPSQSV 73 (273)
T ss_dssp CCTTCEEEEEECSGGGCCB--TTHHHHHHHHHHHHHTTTSEEEEECCCT
T ss_pred CCCCCEEEEEechHHhCCC--CCCHHHHHHHHHHHhCCCCeEEEecccc
Confidence 4567899998877653322 2346789999999999999999999864
No 45
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A*
Probab=67.51 E-value=8.9 Score=32.69 Aligned_cols=39 Identities=13% Similarity=0.127 Sum_probs=23.9
Q ss_pred ceEEEEEeCceEEEEEeCCCCCCCC--ccCCCccCCCCCCcEEEE
Q psy13344 50 PIWKIVKEGEEEIVYGVDFNLKKER--HLNGCVLDRFIRPTVVIT 92 (155)
Q Consensus 50 a~~~i~~~~~~~IvytGD~~~~~~~--~l~~~~l~~~~~~D~LI~ 92 (155)
|+.+.++.++.+|+|+||+....+. .+.+ .+.++|+|++
T Consensus 186 S~vl~i~~~~~~iLftGD~~~~~~~e~~l~~----~~~~~DvLkv 226 (547)
T 2bib_A 186 SLISVVKVNGKKIYLGGDLDNVHGAEDKYGP----LIGKVDLMKF 226 (547)
T ss_dssp CCEEEEEETTEEEEECTTCCSTTSHHHHHHH----HHCCCSEEEC
T ss_pred cEEEEEEECCEEEEecCCccchhhhhhhhcc----cccceeEEEe
Confidence 4444444577999999999875321 1211 1136899986
No 46
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=66.42 E-value=1.9 Score=35.59 Aligned_cols=61 Identities=15% Similarity=0.032 Sum_probs=41.9
Q ss_pred CCCcEEEEcC---CCCCcCCCC-h-hHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHHH
Q psy13344 85 IRPTVVITDT---MSAIYQQAR-R-RTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146 (155)
Q Consensus 85 ~~~D~LI~Es---Tyg~~~~~~-~-~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~~ 146 (155)
.++|++|-+- |-|.+..+. + ..--+..++.+.+.|+.||+.++=+|--+- .+.+..+.++|
T Consensus 168 ~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg-~~~L~~lrk~F 233 (344)
T 3r24_A 168 NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW-NADLYKLMGHF 233 (344)
T ss_dssp SCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC-CHHHHHHHTTE
T ss_pred CCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC-HHHHHHHHhhC
Confidence 4689999875 445443332 1 234466777888999999999999998777 55555555444
No 47
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp}
Probab=63.91 E-value=7.2 Score=29.96 Aligned_cols=41 Identities=7% Similarity=-0.097 Sum_probs=25.4
Q ss_pred CCceeccCCCCceeE----EecCceEEEEEeCceEEEEEeCCCCCC
Q psy13344 31 YDEYGNHSSWAYGEE----IFTGPIWKIVKEGEEEIVYGVDFNLKK 72 (155)
Q Consensus 31 Y~q~~~l~~~~~~vt----~lGGa~~~i~~~~~~~IvytGD~~~~~ 72 (155)
+.+..++. .++++. |-.|++.+....++++++||||.-...
T Consensus 167 ~~~~~~l~-~gi~~~~~pGHt~g~~~~~i~~~~~~vlftGD~~~~~ 211 (280)
T 3esh_A 167 FEKHFEPV-PGIKMQHSGGHSFGHTIITIESQGDKAVHMGDIFPTT 211 (280)
T ss_dssp ESSEECSS-TTEEEEECCSSSTTCEEEEEEETTEEEEECGGGSCSG
T ss_pred eCCCCeEc-CCEEEEEcCCCCcccEEEEEEECCcEEEEEEccCCch
Confidence 34445554 245554 665666555545678999999987543
No 48
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=62.25 E-value=14 Score=28.98 Aligned_cols=58 Identities=17% Similarity=0.118 Sum_probs=35.0
Q ss_pred CCCcEEEEcCCCCCcCCCChh-HHHHHHHHHHHHHHhCCC--eEEEEecccHHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQQARRR-TRDERLMTNILQTLRNNG--NVLVAVDTAGRVLELTHMLEQ 144 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~-~~~~~l~~~I~~tl~~gG--~VLIP~fa~GR~qEll~~L~~ 144 (155)
...|+++++.. ....++... .+.-.+++.+.++|+.|| ..++-+|. ....+++..++.
T Consensus 147 ~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~-~~~~~~~~~l~~ 207 (276)
T 2wa2_A 147 FQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN-PYSCDVLEALMK 207 (276)
T ss_dssp CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC-CCSHHHHHHHHH
T ss_pred CCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC-CCchhHHHHHHH
Confidence 36899999865 222221111 111136788889999999 99998887 545544444443
No 49
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=61.99 E-value=27 Score=27.92 Aligned_cols=60 Identities=7% Similarity=0.041 Sum_probs=38.7
Q ss_pred CCCcEEEEcCCCCCcCCCCh--hHHHHHHHHHHHHHHhCCC-eEEEEecccHHHHHH---HHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQQARR--RTRDERLMTNILQTLRNNG-NVLVAVDTAGRVLEL---THMLEQLWR 147 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~--~~~~~~l~~~I~~tl~~gG-~VLIP~fa~GR~qEl---l~~L~~~~~ 147 (155)
.++|++|++-.-- ..++.. ..... -++...+.|+.|| +-++=+|. |-..++ +..|.+.|.
T Consensus 138 ~~~DvVLSDMAPn-SG~~~vD~~Rs~~-aL~~A~~~Lk~gG~~FvvKVFq-g~~~~~~~~l~~lk~~F~ 203 (269)
T 2px2_A 138 EISDTLLCDIGES-SPSAEIEEQRTLR-ILEMVSDWLSRGPKEFCIKILC-PYMPKVIEKLESLQRRFG 203 (269)
T ss_dssp CCCSEEEECCCCC-CSCHHHHHHHHHH-HHHHHHHHHTTCCSEEEEEESC-TTSHHHHHHHHHHHHHHC
T ss_pred CCCCEEEeCCCCC-CCccHHHHHHHHH-HHHHHHHHhhcCCcEEEEEECC-CCchHHHHHHHHHHHHcC
Confidence 3689999987553 333211 11223 4567778999999 99999999 644555 445555554
No 50
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=61.84 E-value=11 Score=29.99 Aligned_cols=48 Identities=6% Similarity=0.199 Sum_probs=35.8
Q ss_pred CCCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecccH
Q psy13344 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAG 133 (155)
Q Consensus 84 ~~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~G 133 (155)
+.+-|+|++-|....--.. ..-.+.+++++.+++...|++++|+|...
T Consensus 29 i~~Gd~llVHsSl~~lG~v--~gg~~~vi~AL~~~vg~~GTLvmPt~t~~ 76 (268)
T 3ijw_A 29 LKKGMTVIVHSSLSSIGWI--SGGAVAVVEALMEVITEEGTIIMPTQSSD 76 (268)
T ss_dssp CCTTCEEEEEECTGGGCCB--TTHHHHHHHHHHHHHCTTSEEEEECCCGG
T ss_pred CCCCCEEEEEechHHhCCC--CCCHHHHHHHHHHHhCCCCeEEEeccccc
Confidence 3567899998877542221 22456899999999999999999998743
No 51
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=61.81 E-value=12 Score=30.25 Aligned_cols=47 Identities=4% Similarity=0.073 Sum_probs=35.8
Q ss_pred CCCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEeccc
Q psy13344 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTA 132 (155)
Q Consensus 84 ~~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~ 132 (155)
+.+-|+|++-|....--.- ..-.+.+++++.+++-..|++++|+|..
T Consensus 36 I~~Gd~llVHsSL~~lG~v--~Gga~~vi~AL~~~vg~~GTLvmPt~t~ 82 (286)
T 3sma_A 36 VRPGGVLLVHASLSALGWV--CGGAQAVVLALQDAVGKEGTLVMPTFSG 82 (286)
T ss_dssp CCTTCEEEEEECSTTSCEE--TTHHHHHHHHHHHHHCTTCEEEEECCCT
T ss_pred CCCCCEEEEEechHHhCCC--CCCHHHHHHHHHHHhcCCCEEEEeccCc
Confidence 3567899998877653321 2335679999999999999999999864
No 52
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=61.05 E-value=12 Score=28.15 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=32.4
Q ss_pred CCcEEEEcCCCCCcCCCCh---hHHHHHHHHHHHHHHhCCCeEEE
Q psy13344 86 RPTVVITDTMSAIYQQARR---RTRDERLMTNILQTLRNNGNVLV 127 (155)
Q Consensus 86 ~~D~LI~EsTyg~~~~~~~---~~~~~~l~~~I~~tl~~gG~VLI 127 (155)
+.|++|+.-.|........ .+....+++.+.+.|+.||.+++
T Consensus 168 ~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 212 (250)
T 1o9g_A 168 APDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAV 212 (250)
T ss_dssp CCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred CceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEE
Confidence 6899999988776443221 35557889999999999999988
No 53
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=60.40 E-value=33 Score=24.81 Aligned_cols=59 Identities=14% Similarity=0.147 Sum_probs=37.7
Q ss_pred CCcEEEEcCCCCC--cCCCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHH
Q psy13344 86 RPTVVITDTMSAI--YQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQ 144 (155)
Q Consensus 86 ~~D~LI~EsTyg~--~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~ 144 (155)
..|++++.-.-.. ..|..+......+++.+.+.|+.||.+++-+....-..+++..+.+
T Consensus 111 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 171 (214)
T 1yzh_A 111 EIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQ 171 (214)
T ss_dssp CCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Confidence 5788887632110 0011111123679999999999999999988765656666666654
No 54
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=60.30 E-value=8.4 Score=28.27 Aligned_cols=60 Identities=10% Similarity=0.007 Sum_probs=37.7
Q ss_pred CCCcEEEEcCCCCCcCCCCh-------------hHHHHHHHHHHHHHHhCCCeEEEEecc-cHHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQQARR-------------RTRDERLMTNILQTLRNNGNVLVAVDT-AGRVLELTHMLEQ 144 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~-------------~~~~~~l~~~I~~tl~~gG~VLIP~fa-~GR~qEll~~L~~ 144 (155)
...|+++++-.|........ .+...++++.+.+.|+.||.+++-+.. ..+.+++...+.+
T Consensus 122 ~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~ 195 (230)
T 3evz_A 122 GTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIK 195 (230)
T ss_dssp SCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred CceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHH
Confidence 46899999877755332110 122367888899999999999883322 2566777666654
No 55
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei}
Probab=59.19 E-value=49 Score=25.53 Aligned_cols=44 Identities=7% Similarity=-0.065 Sum_probs=26.9
Q ss_pred ceecCCceeccCCCCceeE----EecCceEEEEEeCceE------EEEEeCCCC
Q psy13344 27 TKIKYDEYGNHSSWAYGEE----IFTGPIWKIVKEGEEE------IVYGVDFNL 70 (155)
Q Consensus 27 ~~v~Y~q~~~l~~~~~~vt----~lGGa~~~i~~~~~~~------IvytGD~~~ 70 (155)
+.+.-++.+.+.+..+++. |--|++.+.....+++ ++||||.=.
T Consensus 124 ~~~~~g~~l~~g~~~i~vi~tPGHT~g~~~~~~~~~~~~~~~~~~~lftGD~l~ 177 (298)
T 4efz_A 124 RLLDDGDTLALGALSIRAMHTPGHTPACMTYVVTEAHAAHDARDAAAFVGDTLF 177 (298)
T ss_dssp EEECTTCEEEETTEEEEEEECCSSSTTCEEEEEEETTCCGGGCBCEEECCSSBC
T ss_pred EEeCCCCEEEECCEEEEEEECCCCCcccEEEEECCCcccccCCceEEEEcCccc
Confidence 6677777888763223332 5556665555444444 999999643
No 56
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=56.60 E-value=81 Score=25.79 Aligned_cols=86 Identities=14% Similarity=0.076 Sum_probs=52.7
Q ss_pred ceEEEEEeCCCCCCCC--------------ccCC---CccCCCCCCcEEEEcCCCCCcCCCChhH--HHHHHHHHHHHHH
Q psy13344 59 EEEIVYGVDFNLKKER--------------HLNG---CVLDRFIRPTVVITDTMSAIYQQARRRT--RDERLMTNILQTL 119 (155)
Q Consensus 59 ~~~IvytGD~~~~~~~--------------~l~~---~~l~~~~~~D~LI~EsTyg~~~~~~~~~--~~~~l~~~I~~tl 119 (155)
+-+-||+-|++....- .+.+ ..+++ ..+|+++++-.- ...+ +..+ +.-+.++.+.+.|
T Consensus 117 gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~-~~~D~ivcDige-Ss~~-~~ve~~Rtl~vLel~~~wL 193 (321)
T 3lkz_A 117 RVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPS-ECCDTLLCDIGE-SSSS-AEVEEHRTIRVLEMVEDWL 193 (321)
T ss_dssp TEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCC-CCCSEEEECCCC-CCSC-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCC-CCCCEEEEECcc-CCCC-hhhhhhHHHHHHHHHHHHh
Confidence 4567888898866211 0111 12233 468999998762 1122 1222 2223677778999
Q ss_pred hCC-CeEEEEeccc--HHHHHHHHHHHHHHH
Q psy13344 120 RNN-GNVLVAVDTA--GRVLELTHMLEQLWR 147 (155)
Q Consensus 120 ~~g-G~VLIP~fa~--GR~qEll~~L~~~~~ 147 (155)
++| |.-.|-+|.- ...+|.+..|...|.
T Consensus 194 ~~~~~~f~~KVl~pY~~~v~e~l~~lq~~fg 224 (321)
T 3lkz_A 194 HRGPREFCVKVLCPYMPKVIEKMELLQRRYG 224 (321)
T ss_dssp TTCCCEEEEEESCTTSHHHHHHHHHHHHHHC
T ss_pred ccCCCcEEEEEcCCCChHHHHHHHHHHHHhC
Confidence 888 8999999986 666666666666553
No 57
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=56.40 E-value=28 Score=27.70 Aligned_cols=46 Identities=9% Similarity=0.045 Sum_probs=32.9
Q ss_pred CCcEEEEcCCCCCcCCCCh--hHHHHHHHHHHHHHHhCCCeEEEEecc
Q psy13344 86 RPTVVITDTMSAIYQQARR--RTRDERLMTNILQTLRNNGNVLVAVDT 131 (155)
Q Consensus 86 ~~D~LI~EsTyg~~~~~~~--~~~~~~l~~~I~~tl~~gG~VLIP~fa 131 (155)
..|++|++-.||.+..+.. .....++.+.+.+.|+.||.+++-+..
T Consensus 272 ~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~ 319 (354)
T 3tma_A 272 EVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR 319 (354)
T ss_dssp CCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred CCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 4599999999998765322 223367888899999999999887664
No 58
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=55.54 E-value=7.2 Score=29.90 Aligned_cols=60 Identities=10% Similarity=-0.005 Sum_probs=39.1
Q ss_pred CCCcEEEEcCCCCCcC---CCCh---------hHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQ---QARR---------RTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQL 145 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~---~~~~---------~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~ 145 (155)
...|++|++-.|.... .+.. ....+.+++.+.+.|+.||.+++ +....+..|++..+.+.
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~~~~~l~~~ 185 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSL-ISRPQSVAEIIAACGSR 185 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEE-EECGGGHHHHHHHHTTT
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEE-EEcHHHHHHHHHHHHhc
Confidence 3689999997776531 0000 11246788889999999999877 44556888888777653
No 59
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=54.57 E-value=29 Score=23.76 Aligned_cols=49 Identities=4% Similarity=0.045 Sum_probs=35.4
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQL 145 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~ 145 (155)
...|++++... . ....+++.+.+. .||.+++-........+++..|.++
T Consensus 99 ~~~D~i~~~~~------~----~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~ 147 (183)
T 2yxd_A 99 LEFNKAFIGGT------K----NIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESR 147 (183)
T ss_dssp CCCSEEEECSC------S----CHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHT
T ss_pred CCCcEEEECCc------c----cHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHc
Confidence 36799998766 1 123555556655 9999999888888888888777654
No 60
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=53.59 E-value=12 Score=24.57 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHhCCCeEEEEec
Q psy13344 105 RTRDERLMTNILQTLRNNGNVLVAVD 130 (155)
Q Consensus 105 ~~~~~~l~~~I~~tl~~gG~VLIP~f 130 (155)
....+.|.+.|.+.|.+|+.|-||-|
T Consensus 25 ~~~v~~~~~~i~~~L~~g~~V~l~gf 50 (93)
T 3rhi_A 25 TVVVQTVVESITNTLAAGEKVQLIGF 50 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEETTT
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 34568899999999999999999876
No 61
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=53.10 E-value=29 Score=25.43 Aligned_cols=38 Identities=8% Similarity=0.148 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHH
Q psy13344 108 DERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQL 145 (155)
Q Consensus 108 ~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~ 145 (155)
...+++.+.+.|+.||.+++-+.......+++..+.+.
T Consensus 132 ~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~ 169 (213)
T 2fca_A 132 YSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEY 169 (213)
T ss_dssp SHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHC
Confidence 36789999999999999999887766677777666554
No 62
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=52.75 E-value=6.4 Score=31.25 Aligned_cols=61 Identities=11% Similarity=0.134 Sum_probs=38.8
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEE----ecccHHHHHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVA----VDTAGRVLELTHMLEQLWR 147 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP----~fa~GR~qEll~~L~~~~~ 147 (155)
.+.|++|++++... .++......+|.+.+.+.|+.||.+++- .+......+++..+.+.+.
T Consensus 156 ~~fDvIi~D~~~p~--~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~s~~~~~~~~~~~~~~l~~~F~ 220 (294)
T 3adn_A 156 QTFDVIISDCTDPI--GPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFS 220 (294)
T ss_dssp CCEEEEEECC------------CCHHHHHHHHHTEEEEEEEEEEEEECSSCCHHHHHHHHHHHHHCS
T ss_pred CCccEEEECCCCcc--CcchhccHHHHHHHHHHhcCCCCEEEEecCCcccchHHHHHHHHHHHHHCC
Confidence 36799999887432 1211111268999999999999999985 3445667777777766643
No 63
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=52.26 E-value=4.6 Score=31.55 Aligned_cols=60 Identities=10% Similarity=0.194 Sum_probs=40.3
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEe----cccHHHHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAV----DTAGRVLELTHMLEQLW 146 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~----fa~GR~qEll~~L~~~~ 146 (155)
.+.|++|+++++.... +......+|.+.+.+.|+.||.+++-+ +...+.+++...|.+.+
T Consensus 147 ~~fD~Ii~d~~~~~~~--~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F 210 (275)
T 1iy9_A 147 NQYDVIMVDSTEPVGP--AVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIF 210 (275)
T ss_dssp SCEEEEEESCSSCCSC--CCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTC
T ss_pred CCeeEEEECCCCCCCc--chhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhC
Confidence 3689999998874322 111123578899999999999998853 33455666666665554
No 64
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens}
Probab=50.29 E-value=21 Score=26.91 Aligned_cols=45 Identities=9% Similarity=-0.011 Sum_probs=27.5
Q ss_pred ceec-CCceeccCCCCceeEEe-----cCceEEEEEeCc-eEEEEEeCCCCCC
Q psy13344 27 TKIK-YDEYGNHSSWAYGEEIF-----TGPIWKIVKEGE-EEIVYGVDFNLKK 72 (155)
Q Consensus 27 ~~v~-Y~q~~~l~~~~~~vt~l-----GGa~~~i~~~~~-~~IvytGD~~~~~ 72 (155)
+.++ +++.+++.+ ++++.+. -|+..+....++ ++++|+||.....
T Consensus 167 ~~~~~~g~~~~l~~-~~~v~~~~pgHt~g~~~~~~~~~~~~~vl~~GD~~~~~ 218 (276)
T 2r2d_A 167 DLVGRDERERELAP-GVNLLNFGTGHASGMLGLAVRLEKQPGFLLVSDACYTA 218 (276)
T ss_dssp EEECTTCCEEEEET-TEEEEEEESSSSSSEEEEEEECSSSCEEEEEETTSCCH
T ss_pred eeccCCCceeEecC-CEEEEeCCCCCCceeEEEEEEcCCCceEEEEechhhhH
Confidence 4455 467777763 4665533 345444443344 7999999987654
No 65
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}
Probab=50.11 E-value=23 Score=24.30 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHhCCCeEEEEecc-cHHHHH
Q psy13344 105 RTRDERLMTNILQTLRNNGNVLVAVDT-AGRVLE 137 (155)
Q Consensus 105 ~~~~~~l~~~I~~tl~~gG~VLIP~fa-~GR~qE 137 (155)
.....+.++.|.+.+++||+|||=|.+ +||+==
T Consensus 64 ~~~~~~~~~fi~~~~~~~~~VlVHC~~G~sRS~~ 97 (144)
T 3s4e_A 64 LSYFPECFEFIEEAKRKDGVVLVHSNAGVSRAAA 97 (144)
T ss_dssp GGGHHHHHHHHHHHHHTTCCEEEECSSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEcCCCCchHHH
Confidence 345677788899999999999999987 467543
No 66
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=49.38 E-value=24 Score=25.71 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=31.1
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecccH
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAG 133 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~G 133 (155)
...|++++......- + .....+++..+.+.|+.||.++|-.+..+
T Consensus 108 ~~fD~v~~~~~l~~~---~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 152 (234)
T 3dtn_A 108 EKYDMVVSALSIHHL---E-DEDKKELYKRSYSILKESGIFINADLVHG 152 (234)
T ss_dssp SCEEEEEEESCGGGS---C-HHHHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred CCceEEEEeCccccC---C-HHHHHHHHHHHHHhcCCCcEEEEEEecCC
Confidence 468999987544322 2 22335788999999999999998554433
No 67
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=48.74 E-value=7.2 Score=27.85 Aligned_cols=59 Identities=5% Similarity=-0.075 Sum_probs=35.7
Q ss_pred CCCcEEEEcCCCCCcCCC---Chh-----------------HHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQQA---RRR-----------------TRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~---~~~-----------------~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~ 143 (155)
...|+++++-.|...... +.. +...++++.+.+.|+.||.+++-.......+++..++.
T Consensus 100 ~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~ 178 (215)
T 4dzr_A 100 RPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARLFA 178 (215)
T ss_dssp CCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTG
T ss_pred CcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHH
Confidence 478999998777553211 000 11167788888999999995554444555666555543
No 68
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica}
Probab=48.39 E-value=12 Score=27.04 Aligned_cols=42 Identities=5% Similarity=-0.064 Sum_probs=25.5
Q ss_pred ceecCCceeccCCCCceeE----EecCceEEEEEeCceEEEEEeCCCC
Q psy13344 27 TKIKYDEYGNHSSWAYGEE----IFTGPIWKIVKEGEEEIVYGVDFNL 70 (155)
Q Consensus 27 ~~v~Y~q~~~l~~~~~~vt----~lGGa~~~i~~~~~~~IvytGD~~~ 70 (155)
+.++-++.+++.+..+++. |-.|++.+.. .+.+++|+||.-.
T Consensus 109 ~~~~~g~~~~~g~~~i~~~~~pgHt~g~~~~~~--~~~~~lf~GD~~~ 154 (210)
T 2xf4_A 109 RWLNDGDRVSVGNVTLQVLHCPGHTPGHVVFFD--EQSQLLISGDVIF 154 (210)
T ss_dssp BCCCTTCEEEETTEEEEEEECCSSSTTCEEEEE--TTTTEEEEETSEE
T ss_pred eEECCCCEEEECCeEEEEEECCCCCCCcEEEEe--CCCCEEEECCEec
Confidence 5566667777763223332 5555665554 3478999999754
No 69
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=47.52 E-value=11 Score=29.72 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=36.8
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEE----ecccHHHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVA----VDTAGRVLELTHMLEQL 145 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP----~fa~GR~qEll~~L~~~ 145 (155)
...|++|++++... .+...-...+|.+.+.+.|+.||.+++= .+.....+++...|.+.
T Consensus 168 ~~fDvIi~d~~~~~--~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~ 230 (304)
T 3bwc_A 168 NTYDVVIIDTTDPA--GPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRET 230 (304)
T ss_dssp TCEEEEEEECC-----------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred CceeEEEECCCCcc--ccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhC
Confidence 46799999887633 1111111267899999999999999983 33334566666666655
No 70
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=47.25 E-value=17 Score=23.51 Aligned_cols=26 Identities=8% Similarity=0.190 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHhCCCeEEEEec
Q psy13344 105 RTRDERLMTNILQTLRNNGNVLVAVD 130 (155)
Q Consensus 105 ~~~~~~l~~~I~~tl~~gG~VLIP~f 130 (155)
....+.|.+.|.+.|.+|+.|-||-|
T Consensus 22 ~~~l~~~~~~i~~~L~~g~~V~l~gf 47 (90)
T 2o97_B 22 GRALDAIIASVTESLKEGDDVALVGF 47 (90)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEETTT
T ss_pred HHHHHHHHHHHHHHHHCCCeEEECCC
Confidence 34568899999999999999999865
No 71
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=46.93 E-value=36 Score=26.13 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=37.9
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEE---ecccHHHHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVA---VDTAGRVLELTHMLEQLW 146 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP---~fa~GR~qEll~~L~~~~ 146 (155)
.+.|++++..+.. +-+..++ .+++..|.+.|+.||.++|- .+.-.+.++.+.-++..+
T Consensus 138 ~~~d~v~~~~~l~---~~~~~~~-~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~ 198 (261)
T 4gek_A 138 ENASMVVLNFTLQ---FLEPSER-QALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDF 198 (261)
T ss_dssp CSEEEEEEESCGG---GSCHHHH-HHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHH
T ss_pred cccccceeeeeee---ecCchhH-hHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHH
Confidence 4678888765432 2222233 57889999999999998873 233456777766655444
No 72
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=46.41 E-value=77 Score=22.55 Aligned_cols=41 Identities=10% Similarity=0.105 Sum_probs=28.9
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEe
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAV 129 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~ 129 (155)
...|++++...... -+ .....+++..+.+.|+.||.++|-.
T Consensus 105 ~~fD~v~~~~~l~~---~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 145 (220)
T 3hnr_A 105 TSIDTIVSTYAFHH---LT-DDEKNVAIAKYSQLLNKGGKIVFAD 145 (220)
T ss_dssp SCCSEEEEESCGGG---SC-HHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCeEEEEECcchhc---CC-hHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 47899998754432 22 2223458899999999999999864
No 73
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=46.31 E-value=18 Score=23.35 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHhCCCeEEEEec
Q psy13344 105 RTRDERLMTNILQTLRNNGNVLVAVD 130 (155)
Q Consensus 105 ~~~~~~l~~~I~~tl~~gG~VLIP~f 130 (155)
....+.|.+.|.+.|.+|+.|-||-|
T Consensus 22 ~~~l~~~~~~i~~~L~~g~~V~l~gf 47 (90)
T 1mul_A 22 KAALESTLAAITESLKEGDAVQLVGF 47 (90)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEETTT
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEcCC
Confidence 34568899999999999999999865
No 74
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=45.83 E-value=13 Score=27.84 Aligned_cols=36 Identities=11% Similarity=0.080 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHH
Q psy13344 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQ 144 (155)
Q Consensus 109 ~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~ 144 (155)
.+|++.+.+.|+.||.+++-+..-.-+.+++..+..
T Consensus 130 ~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~ 165 (218)
T 3dxy_A 130 VPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSS 165 (218)
T ss_dssp HHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 469999999999999999988877667777766654
No 75
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A*
Probab=45.74 E-value=21 Score=28.26 Aligned_cols=44 Identities=7% Similarity=0.010 Sum_probs=26.6
Q ss_pred CceecCCceeccCCCCceeE----EecCceEEEEEeCc---e-EEEEEeCCC
Q psy13344 26 ETKIKYDEYGNHSSWAYGEE----IFTGPIWKIVKEGE---E-EIVYGVDFN 69 (155)
Q Consensus 26 D~~v~Y~q~~~l~~~~~~vt----~lGGa~~~i~~~~~---~-~IvytGD~~ 69 (155)
+..+.-++.+++.+..+++. |-.|++.+.....+ . +++||||.-
T Consensus 131 ~~~l~~g~~l~lg~~~l~vi~tPGHT~g~i~~~~~~~~~~~~~~~lftGD~l 182 (311)
T 2p18_A 131 TKPVREGDRVQVGDLSVEVIDAPCHTRGHVLYKVQHPQHPNDGVALFTGDTM 182 (311)
T ss_dssp SEEECTTCEEEETTEEEEEEECCSSSTTCEEEEEECTTCGGGCEEEEEETTE
T ss_pred ceEeCCCCEEEECCeEEEEEECCCCCcccEEEEEecCCcCCcCCEEEEcCcc
Confidence 35666677777763223332 44555555543344 5 899999964
No 76
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=45.12 E-value=20 Score=23.16 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHhCCCeEEEEec
Q psy13344 105 RTRDERLMTNILQTLRNNGNVLVAVD 130 (155)
Q Consensus 105 ~~~~~~l~~~I~~tl~~gG~VLIP~f 130 (155)
....+.|.+.|.+.|.+|++|-||-|
T Consensus 22 ~~~l~~~~~~i~~~L~~g~~V~l~gf 47 (90)
T 1b8z_A 22 KLILDTILETITEALAKGEKVQIVGF 47 (90)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEETTT
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECCC
Confidence 34568899999999999999999865
No 77
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensat binding; 2.04A {Mycobacterium tuberculosis}
Probab=44.88 E-value=19 Score=23.78 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHhCCCeEEEEec
Q psy13344 105 RTRDERLMTNILQTLRNNGNVLVAVD 130 (155)
Q Consensus 105 ~~~~~~l~~~I~~tl~~gG~VLIP~f 130 (155)
....+.|.+.|.+.|.+|+.|-||-|
T Consensus 22 ~~~l~~~~~~i~~~L~~g~~V~l~gf 47 (99)
T 3c4i_A 22 TAAVENVVDTIVRAVHKGDSVTITGF 47 (99)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEETTT
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECCC
Confidence 34568899999999999999999865
No 78
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=44.85 E-value=20 Score=23.43 Aligned_cols=26 Identities=8% Similarity=0.063 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHhCCCeEEEEec
Q psy13344 105 RTRDERLMTNILQTLRNNGNVLVAVD 130 (155)
Q Consensus 105 ~~~~~~l~~~I~~tl~~gG~VLIP~f 130 (155)
....+.|.+.|.+.|.+|+.|-||-|
T Consensus 22 ~~~l~~~~~~i~~~L~~g~~V~l~gf 47 (94)
T 1p71_A 22 DAVLTAALETIIEAVSSGDKVTLVGF 47 (94)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEETTT
T ss_pred HHHHHHHHHHHHHHHhCCCeEEecCC
Confidence 34568899999999999999999865
No 79
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=44.50 E-value=20 Score=23.34 Aligned_cols=26 Identities=8% Similarity=0.128 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHhCCCeEEEEec
Q psy13344 105 RTRDERLMTNILQTLRNNGNVLVAVD 130 (155)
Q Consensus 105 ~~~~~~l~~~I~~tl~~gG~VLIP~f 130 (155)
....+.|.+.|.+.|..|+.|-||-|
T Consensus 23 ~~~l~~~~~~i~~~L~~g~~V~l~gf 48 (94)
T 1owf_B 23 EDAVKEMLEHMASTLAQGERIAIRGF 48 (94)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEETTT
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEcCc
Confidence 34568899999999999999999865
No 80
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=44.32 E-value=14 Score=28.70 Aligned_cols=60 Identities=12% Similarity=0.181 Sum_probs=37.3
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEe----cccHHHHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAV----DTAGRVLELTHMLEQLW 146 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~----fa~GR~qEll~~L~~~~ 146 (155)
...|++|+++..... ++......+|.+.+.+.|+.||.+++-+ +......++...+.+.+
T Consensus 151 ~~fD~Ii~d~~~~~~--~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f 214 (281)
T 1mjf_A 151 RGFDVIIADSTDPVG--PAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVF 214 (281)
T ss_dssp CCEEEEEEECCCCC-------TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHC
T ss_pred CCeeEEEECCCCCCC--cchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHC
Confidence 357999999876321 1111113678999999999999998843 23334455555555443
No 81
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis, transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h06_A 2h07_A 2h08_A
Probab=43.78 E-value=36 Score=27.73 Aligned_cols=46 Identities=9% Similarity=0.022 Sum_probs=30.2
Q ss_pred CCCCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCC----eEEEEecccHH
Q psy13344 83 RFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNG----NVLVAVDTAGR 134 (155)
Q Consensus 83 ~~~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG----~VLIP~fa~GR 134 (155)
+++..|++|+-||++. ..+..=+|+-. .+++++.| +++||.|+.+|
T Consensus 47 svrg~dV~iiqs~~~p-----~nd~lmeLl~~-idA~k~asA~rIt~ViPY~~YaR 96 (326)
T 3s5j_B 47 SVRGEDVYIVQSGCGE-----INDNLMELLIM-INACKIASASRVTAVIPCFPYAR 96 (326)
T ss_dssp CCTTCEEEEECCCCSC-----HHHHHHHHHHH-HHHHHHTTCSEEEEEESSCTTTT
T ss_pred CcCCCcEEEEecCCCC-----ccHHHHHHHHH-HHHHHhcCCcEEEEeccCccccc
Confidence 4467899999998753 22333343333 35666555 78999999987
No 82
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=43.45 E-value=9.7 Score=29.99 Aligned_cols=61 Identities=11% Similarity=0.127 Sum_probs=37.0
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEE----ecccHHHHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVA----VDTAGRVLELTHMLEQLW 146 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP----~fa~GR~qEll~~L~~~~ 146 (155)
.+.|++|++..... ..+.......+|.+.+.+.|+.||.+++- .+.....++++..|.+.+
T Consensus 162 ~~fD~Ii~d~~~~~-~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F 226 (296)
T 1inl_A 162 NEFDVIIIDSTDPT-AGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVF 226 (296)
T ss_dssp SCEEEEEEEC-----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHC
T ss_pred CCceEEEEcCCCcc-cCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHC
Confidence 35799999876431 11111112267889999999999999984 344455666666666654
No 83
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=43.22 E-value=56 Score=22.84 Aligned_cols=58 Identities=16% Similarity=0.122 Sum_probs=36.9
Q ss_pred CCCcEEEEcCCCCCcCCC----ChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQQA----RRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQ 144 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~----~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~ 144 (155)
...|++++...|.....+ ..... .+++..+.+.+ .||.+++-........++..+|.+
T Consensus 77 ~~fD~i~~n~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~ 138 (170)
T 3q87_B 77 ESVDVVVFNPPYVPDTDDPIIGGGYLG-REVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEE 138 (170)
T ss_dssp GGCSEEEECCCCBTTCCCTTTBCCGGG-CHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHH
T ss_pred CCCCEEEECCCCccCCccccccCCcch-HHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHH
Confidence 468999998877653322 01111 23444444455 999999977777777888777765
No 84
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=43.09 E-value=10 Score=30.42 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=37.2
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEe----cccHHHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAV----DTAGRVLELTHMLEQL 145 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~----fa~GR~qEll~~L~~~ 145 (155)
.+.|++|++.+-. .++.......+|.+.+.+.|+.||.+++-. +.....++++..|.+.
T Consensus 188 ~~fDvIi~d~~~p--~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~ 250 (321)
T 2pt6_A 188 NTYDVIIVDSSDP--IGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL 250 (321)
T ss_dssp SCEEEEEEECCCS--SSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTT
T ss_pred CCceEEEECCcCC--CCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH
Confidence 3579999987532 122111112688999999999999999833 3334555555555544
No 85
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=42.26 E-value=17 Score=29.05 Aligned_cols=60 Identities=12% Similarity=0.125 Sum_probs=34.1
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEe----cccHHHHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAV----DTAGRVLELTHMLEQLW 146 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~----fa~GR~qEll~~L~~~~ 146 (155)
.+.|++|++++... .++......+|.+.+.+.|+.||.+++-. ........+...+.+.+
T Consensus 180 ~~fD~Ii~d~~~~~--~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~vF 243 (314)
T 2b2c_A 180 NEFDVIITDSSDPV--GPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIF 243 (314)
T ss_dssp TCEEEEEECCC---------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHC
T ss_pred CCceEEEEcCCCCC--CcchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHHC
Confidence 35799999875321 12111122689999999999999999843 33334555555555554
No 86
>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending protein, dnabii family, HU/IHF family, DNA binding protein/DNA complex; 3.02A {Borrelia burgdorferi}
Probab=41.90 E-value=24 Score=23.70 Aligned_cols=26 Identities=12% Similarity=0.060 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHhCCCeEEEEec
Q psy13344 105 RTRDERLMTNILQTLRNNGNVLVAVD 130 (155)
Q Consensus 105 ~~~~~~l~~~I~~tl~~gG~VLIP~f 130 (155)
....+.|.+.|.+.|.+|+.|-||-|
T Consensus 35 ~~vl~~~~~~i~~~L~~G~~V~l~gf 60 (108)
T 2np2_A 35 RLVIDAFFEELKSNLCSNNVIEFRSF 60 (108)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEETTT
T ss_pred HHHHHHHHHHHHHHHHCCCeEEecCc
Confidence 35668899999999999999999865
No 87
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=41.82 E-value=22 Score=25.26 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=32.1
Q ss_pred CCCcEEEEcCCCCC---cCCCChhHHHHHHHHHHHHHHhCCCeEEEEecc
Q psy13344 85 IRPTVVITDTMSAI---YQQARRRTRDERLMTNILQTLRNNGNVLVAVDT 131 (155)
Q Consensus 85 ~~~D~LI~EsTyg~---~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa 131 (155)
...|++++...|-. .......+...+++..+.+.|+.||.+++-.+.
T Consensus 92 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 92 CPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp SCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 46899999886622 111112233456899999999999999887654
No 88
>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1m3g_A
Probab=41.77 E-value=32 Score=23.41 Aligned_cols=33 Identities=18% Similarity=0.120 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEecc-cHHHHHH
Q psy13344 106 TRDERLMTNILQTLRNNGNVLVAVDT-AGRVLEL 138 (155)
Q Consensus 106 ~~~~~l~~~I~~tl~~gG~VLIP~fa-~GR~qEl 138 (155)
....+..+.|.+..++||+|||=|.+ .||+==+
T Consensus 65 ~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~~ 98 (144)
T 3ezz_A 65 SWFMEAIEYIDAVKDCRGRVLVHSQAGISRSATI 98 (144)
T ss_dssp TTHHHHHHHHHHHHHTTCCEEEEESSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEECCCCCChhHHH
Confidence 45567788888888999999999987 4686543
No 89
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ihf_A 1ouz_A 1owg_A 2ht0_A
Probab=41.17 E-value=24 Score=23.27 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHhCCCeEEEEec
Q psy13344 105 RTRDERLMTNILQTLRNNGNVLVAVD 130 (155)
Q Consensus 105 ~~~~~~l~~~I~~tl~~gG~VLIP~f 130 (155)
....+.|.+.|.+.|.+|++|-||-|
T Consensus 24 ~~vl~~~~~~i~~~L~~G~~V~l~gf 49 (99)
T 1owf_A 24 KELVELFFEEIRRALENGEQVKLSGF 49 (99)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEETTT
T ss_pred HHHHHHHHHHHHHHHhCCCeEEecCC
Confidence 34568899999999999999998765
No 90
>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus}
Probab=40.96 E-value=56 Score=22.75 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeccc-HHHHHH
Q psy13344 107 RDERLMTNILQTLRNNGNVLVAVDTA-GRVLEL 138 (155)
Q Consensus 107 ~~~~l~~~I~~tl~~gG~VLIP~fa~-GR~qEl 138 (155)
...+..+.|.+.+++||.|||-|.+- ||+==+
T Consensus 74 ~~~~~~~~i~~~~~~~~~VlVHC~aG~~RSg~~ 106 (164)
T 2hcm_A 74 HLEPTCAAMEAAVRDGGSCLVYCKNGRSRSAAV 106 (164)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEEECCCCCchHHHH
Confidence 44667788888889999999999986 887755
No 91
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=40.88 E-value=34 Score=27.37 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=28.6
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEE
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLI 127 (155)
+.+|++++-....+ .+ ++...+++..+.+.|+.||++||
T Consensus 243 ~~~D~~~~~~vlh~--~~--d~~~~~iL~~~~~al~pgg~lli 281 (353)
T 4a6d_A 243 PEADLYILARVLHD--WA--DGKCSHLLERIYHTCKPGGGILV 281 (353)
T ss_dssp CCCSEEEEESSGGG--SC--HHHHHHHHHHHHHHCCTTCEEEE
T ss_pred CCceEEEeeeeccc--CC--HHHHHHHHHHHHhhCCCCCEEEE
Confidence 46798888665432 22 33446788899999999999998
No 92
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=40.44 E-value=38 Score=23.91 Aligned_cols=41 Identities=10% Similarity=0.076 Sum_probs=30.4
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHH--HHhCCCeEEEEec
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQ--TLRNNGNVLVAVD 130 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~--tl~~gG~VLIP~f 130 (155)
...|+++++..|... .....+++..+.+ .|+.||.+++=..
T Consensus 112 ~~fD~i~~~~p~~~~-----~~~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 112 SPVDLVLADPPYNVD-----SADVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp SCCSEEEECCCTTSC-----HHHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred CCccEEEECCCCCcc-----hhhHHHHHHHHHhcCccCCCeEEEEEec
Confidence 468999998776642 2345667777888 9999999988543
No 93
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A
Probab=39.80 E-value=23 Score=26.37 Aligned_cols=27 Identities=11% Similarity=0.133 Sum_probs=17.2
Q ss_pred EecCceEEEEEe-CceEEEEEeCCCCCC
Q psy13344 46 IFTGPIWKIVKE-GEEEIVYGVDFNLKK 72 (155)
Q Consensus 46 ~lGGa~~~i~~~-~~~~IvytGD~~~~~ 72 (155)
|-.|++.+.... ++++++||||.-...
T Consensus 173 Ht~g~~~~~~~~~~~~~vl~~GD~~~~~ 200 (254)
T 3dha_A 173 HSPGHQSLFIETEQSGSVLLTIDASYTK 200 (254)
T ss_dssp SSTTCEEEEEEETTTEEEEEEETTCSSH
T ss_pred CCCCCEEEEEEeCCCCEEEEEecccchh
Confidence 555555444433 357899999987543
No 94
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=39.49 E-value=81 Score=25.83 Aligned_cols=44 Identities=9% Similarity=0.012 Sum_probs=32.6
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhC--CCeEEEEec
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN--NGNVLVAVD 130 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~--gG~VLIP~f 130 (155)
...|++|++-.||.+... +....+|...+.++++. |+++.|=+.
T Consensus 299 ~~fD~Iv~NPPYG~rl~~--~~~l~~ly~~lg~~lk~~~g~~~~iit~ 344 (384)
T 3ldg_A 299 KINGVLISNPPYGERLLD--DKAVDILYNEMGETFAPLKTWSQFILTN 344 (384)
T ss_dssp CCSCEEEECCCCTTTTSC--HHHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred CCcCEEEECCchhhccCC--HHHHHHHHHHHHHHHhhCCCcEEEEEEC
Confidence 368999999999987542 34556788888888876 787766443
No 95
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11
Probab=39.38 E-value=39 Score=24.78 Aligned_cols=43 Identities=7% Similarity=-0.126 Sum_probs=24.4
Q ss_pred ceecCCceeccCCCCceeE----EecCceEEEEEeCc-eEEEEEeCCCCC
Q psy13344 27 TKIKYDEYGNHSSWAYGEE----IFTGPIWKIVKEGE-EEIVYGVDFNLK 71 (155)
Q Consensus 27 ~~v~Y~q~~~l~~~~~~vt----~lGGa~~~i~~~~~-~~IvytGD~~~~ 71 (155)
+.++-++.+. . .++++. |-.|++.+....++ .+++||||.-..
T Consensus 131 ~~~~~g~~l~-~-~~~~v~~~pGHt~g~~~~~~~~~~~~~vlftGD~~~~ 178 (221)
T 1ztc_A 131 VLLKGEESLF-D-EKVKVFHTPWHAREHLSFLLDTENAGRVLITGDITPN 178 (221)
T ss_dssp EEECSCCEET-T-TTEEEEECCSSSTTCEEEEEEETTTEEEEECGGGSCS
T ss_pred EEeCCCCEEE-C-CeEEEEEcCCCCcccEEEEEEcCCCCeEEEEeCcccc
Confidence 4455455443 1 245554 55555555443343 689999997643
No 96
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=39.25 E-value=34 Score=28.46 Aligned_cols=41 Identities=10% Similarity=0.053 Sum_probs=25.0
Q ss_pred ceecCCceeccCCCCceeE------EecCceEEEEEeCce-----EEEEEeCCC
Q psy13344 27 TKIKYDEYGNHSSWAYGEE------IFTGPIWKIVKEGEE-----EIVYGVDFN 69 (155)
Q Consensus 27 ~~v~Y~q~~~l~~~~~~vt------~lGGa~~~i~~~~~~-----~IvytGD~~ 69 (155)
+.+.-++.+.+. +.+++ |--|++.+.....+. +++||||.=
T Consensus 100 ~~~~~g~~~~~g--~~~i~~i~tPGHt~g~~~~~~~~~~~~~~~~~~lftGD~l 151 (474)
T 3tp9_A 100 RLLKDGDELHFG--NVRIVVMHTPGHTPEHVSYLLYDGKTSPDVPMALFSGDFV 151 (474)
T ss_dssp EEECTTCEEEET--TEEEEEEECCSSSSSCEEEEEEETTTEEEEEEEEEEETSE
T ss_pred eECCCCCEEEEC--CEEEEEEECCCCCCCCEEEEEecCCCCCCCceEEEeCCcc
Confidence 456666777776 34444 545555555433333 799999964
No 97
>2e5n_A RNA polymerase II elongation factor ELL2; ELL_N2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.15 E-value=11 Score=25.87 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=17.5
Q ss_pred cccchhhccCCCCCCCCCCC
Q psy13344 7 ANSRFFKSNKKQFPMFPFHE 26 (155)
Q Consensus 7 ~~~~~~~~~~~~~p~yt~~D 26 (155)
-...||+..++++|.||.+|
T Consensus 68 Lk~~~~~eVq~dWp~Yte~e 87 (100)
T 2e5n_A 68 LKDYVFKELQRDWPGYSEID 87 (100)
T ss_dssp ECSTHHHHSCTTCTTCCTTH
T ss_pred hhHHHHHHhccCCCCCCHHH
Confidence 34579999999999999998
No 98
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=38.18 E-value=21 Score=25.02 Aligned_cols=46 Identities=11% Similarity=0.048 Sum_probs=28.6
Q ss_pred CCcEEEEcCCCCCc---CCCChhHHHHHHHHHHHHHHhCCCeEEEEecc
Q psy13344 86 RPTVVITDTMSAIY---QQARRRTRDERLMTNILQTLRNNGNVLVAVDT 131 (155)
Q Consensus 86 ~~D~LI~EsTyg~~---~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa 131 (155)
..|+++..-.|-.. ......+....+++.+.+.|+.||.+++-++.
T Consensus 89 ~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 89 PIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp CEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 57988877544321 11112234456778889999999999998875
No 99
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5
Probab=38.00 E-value=37 Score=26.84 Aligned_cols=27 Identities=15% Similarity=0.064 Sum_probs=18.5
Q ss_pred EecCceEEEEEeCceEEEEEeCCCCCC
Q psy13344 46 IFTGPIWKIVKEGEEEIVYGVDFNLKK 72 (155)
Q Consensus 46 ~lGGa~~~i~~~~~~~IvytGD~~~~~ 72 (155)
|--|++.+....++++++|+||.-...
T Consensus 234 HtpG~~~~~i~~~~~~vlf~GD~~~~~ 260 (331)
T 1p9e_A 234 HTPGHTTYVVESQGQKLALLGDLILVA 260 (331)
T ss_dssp SSTTCEEEEEEETTEEEEECTTSCCCH
T ss_pred CChhCEEEEEEECCcEEEEEECccCcc
Confidence 555555544444668999999987653
No 100
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure initiative, northeast structural GE consortium, NESG, NSR435A, DFA5, electron transport; 1.80A {Nostoc SP} PDB: 4fek_A
Probab=37.28 E-value=30 Score=26.21 Aligned_cols=40 Identities=8% Similarity=-0.027 Sum_probs=24.5
Q ss_pred ceecCCceeccC-CCCceeEEe-----cCceEEEEEeCceEEEEEeCC
Q psy13344 27 TKIKYDEYGNHS-SWAYGEEIF-----TGPIWKIVKEGEEEIVYGVDF 68 (155)
Q Consensus 27 ~~v~Y~q~~~l~-~~~~~vt~l-----GGa~~~i~~~~~~~IvytGD~ 68 (155)
+.++-++.+++. +..+++.+. -|+..... ...+++||||.
T Consensus 130 ~~~~~g~~l~lg~~~~~~~i~tpg~Ht~g~~~~~~--~~~~~lfsGD~ 175 (262)
T 3hnn_A 130 LPMRGKETLDLGKGHVLKFLPIPSPRWPAGLCTYD--VQTQILYTDKI 175 (262)
T ss_dssp EECCSSCEEECSTTCEEEEEECCCSSCTTCEEEEE--TTTTEEEEETT
T ss_pred EEeCCCCEEEcCCCcEEEEEECCCCCCCCeeEEEe--CCCCEEEEeec
Confidence 667778888886 333444422 24443333 34679999997
No 101
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=37.25 E-value=19 Score=26.58 Aligned_cols=45 Identities=7% Similarity=0.020 Sum_probs=30.6
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEec
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVD 130 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~f 130 (155)
...|+++++ +++...+.......+.++..+.+.|+.||.+++-.+
T Consensus 127 ~~fD~V~~d-~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 127 GHFDGILYD-TYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp TCEEEEEEC-CCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred CceEEEEEC-CcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 367999986 444322222334446788999999999999887543
No 102
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=37.18 E-value=48 Score=22.82 Aligned_cols=56 Identities=11% Similarity=0.204 Sum_probs=34.7
Q ss_pred CCCcEEEEc-CCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecccH--HHHHHHHHHHH
Q psy13344 85 IRPTVVITD-TMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAG--RVLELTHMLEQ 144 (155)
Q Consensus 85 ~~~D~LI~E-sTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~G--R~qEll~~L~~ 144 (155)
...|++++. .... +.+ ......+++.+.+.|+.||.+++-..... ...++...|.+
T Consensus 106 ~~~D~i~~~~~~~~---~~~-~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~ 164 (195)
T 3cgg_A 106 TDFDLIVSAGNVMG---FLA-EDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAER 164 (195)
T ss_dssp CCEEEEEECCCCGG---GSC-HHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHH
T ss_pred CceeEEEECCcHHh---hcC-hHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHH
Confidence 367999986 2222 111 23446788999999999999998544321 24455555443
No 103
>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens}
Probab=36.58 E-value=64 Score=21.96 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEeccc-HHHHHHH
Q psy13344 106 TRDERLMTNILQTLRNNGNVLVAVDTA-GRVLELT 139 (155)
Q Consensus 106 ~~~~~l~~~I~~tl~~gG~VLIP~fa~-GR~qEll 139 (155)
+...+..+.|.+.+++||.|||=|.+- ||+==+.
T Consensus 67 ~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RSg~~~ 101 (149)
T 1zzw_A 67 QYFEEAFEFIEEAHQCGKGLLIHCQAGVSRSATIV 101 (149)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHH
Confidence 344667788888888999999999886 7877653
No 104
>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens}
Probab=36.54 E-value=50 Score=22.49 Aligned_cols=32 Identities=13% Similarity=0.047 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeccc-HHHHHH
Q psy13344 107 RDERLMTNILQTLRNNGNVLVAVDTA-GRVLEL 138 (155)
Q Consensus 107 ~~~~l~~~I~~tl~~gG~VLIP~fa~-GR~qEl 138 (155)
...+..+.|.+.+++||+|||=|.+- ||+==+
T Consensus 66 ~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~ 98 (145)
T 2nt2_A 66 YWNDTYKFISKAKKHGSKCLVHSKMGVSRSAST 98 (145)
T ss_dssp GHHHHHHHHHHHHHTTCEEEEECSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHcCCeEEEECCCCCchHHHH
Confidence 34566778888888999999999986 887544
No 105
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=36.49 E-value=24 Score=27.92 Aligned_cols=60 Identities=15% Similarity=0.207 Sum_probs=34.7
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecc----cHHHHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDT----AGRVLELTHMLEQLW 146 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa----~GR~qEll~~L~~~~ 146 (155)
...|++|++++... .++......+|.+.+.+.|+.||.+++-... .....++...+.+.+
T Consensus 167 ~~fD~Ii~d~~~~~--~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f 230 (304)
T 2o07_A 167 DAFDVIITDSSDPM--GPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLF 230 (304)
T ss_dssp SCEEEEEEECC-------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHC
T ss_pred CCceEEEECCCCCC--CcchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhC
Confidence 35799999886532 1211223367899999999999999885422 223445555555544
No 106
>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure, hydrolase; HET: EPE; 2.00A {Homo sapiens}
Probab=36.45 E-value=46 Score=24.12 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeccc-HHHHHH
Q psy13344 107 RDERLMTNILQTLRNNGNVLVAVDTA-GRVLEL 138 (155)
Q Consensus 107 ~~~~l~~~I~~tl~~gG~VLIP~fa~-GR~qEl 138 (155)
...+.++.|.+.+++||+|||-|.+- ||+==+
T Consensus 82 ~~~~~~~fI~~~~~~~~~VLVHC~aG~sRS~~v 114 (188)
T 2esb_A 82 FFDPIADHIHSVEMKQGRTLLHCAAGVSRSAAL 114 (188)
T ss_dssp GHHHHHHHHHHHHHTTCCEEEECSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEEECCCCCchHHHH
Confidence 44566788888888999999999986 787654
No 107
>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A
Probab=35.95 E-value=69 Score=21.55 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHhCCCeEEEEeccc-HHHHHHHH
Q psy13344 105 RTRDERLMTNILQTLRNNGNVLVAVDTA-GRVLELTH 140 (155)
Q Consensus 105 ~~~~~~l~~~I~~tl~~gG~VLIP~fa~-GR~qEll~ 140 (155)
.+...++++.|.+.+++||.|||=|.+- ||+==++.
T Consensus 71 ~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a 107 (150)
T 4erc_A 71 PDQIDRFVQIVDEANARGEAVGVHCALGFGRTGTMLA 107 (150)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHH
Confidence 4567889999999999999999998764 68764443
No 108
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=35.83 E-value=63 Score=23.58 Aligned_cols=42 Identities=12% Similarity=-0.005 Sum_probs=29.8
Q ss_pred CcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEeccc
Q psy13344 87 PTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTA 132 (155)
Q Consensus 87 ~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~ 132 (155)
.|++++........ .+....++..+.+.|+.||.++|-.+..
T Consensus 125 ~d~v~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 166 (245)
T 3ggd_A 125 DANIYMRTGFHHIP----VEKRELLGQSLRILLGKQGAMYLIELGT 166 (245)
T ss_dssp SCEEEEESSSTTSC----GGGHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred ccEEEEcchhhcCC----HHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 68888877654422 1234678889999999999988765543
No 109
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=35.14 E-value=21 Score=27.55 Aligned_cols=51 Identities=14% Similarity=0.207 Sum_probs=37.6
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEeccc-----HHHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTA-----GRVLELTHMLEQL 145 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~-----GR~qEll~~L~~~ 145 (155)
..+|++|++..+ ...+++..+.+.|+.||.+++-++.. +..++.+..+.+.
T Consensus 185 ~~~D~Vi~d~p~----------~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~ 240 (272)
T 3a27_A 185 DVADRVIMGYVH----------KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEK 240 (272)
T ss_dssp TCEEEEEECCCS----------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHH
T ss_pred CCceEEEECCcc----------cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHH
Confidence 368999998654 11346677778899999999998887 6677777666654
No 110
>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}
Probab=34.92 E-value=56 Score=22.96 Aligned_cols=31 Identities=13% Similarity=0.234 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEeccc-HHHH
Q psy13344 106 TRDERLMTNILQTLRNNGNVLVAVDTA-GRVL 136 (155)
Q Consensus 106 ~~~~~l~~~I~~tl~~gG~VLIP~fa~-GR~q 136 (155)
....+..+.|.+.+++||+|||=|.+- ||+=
T Consensus 71 ~~~~~~~~fI~~~~~~~~~VlVHC~~G~sRS~ 102 (161)
T 3emu_A 71 DSIPNAIKFIIRSIQRKEGVLIISGTGVNKAP 102 (161)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEESSSSSHHH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCcHHH
Confidence 345677888899999999999999873 5753
No 111
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=34.24 E-value=42 Score=27.08 Aligned_cols=60 Identities=8% Similarity=0.091 Sum_probs=39.8
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEeccc---HHHHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTA---GRVLELTHMLEQLW 146 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~---GR~qEll~~L~~~~ 146 (155)
.+.|++|+++..+... +..-...+|.+.+.+.|+.||.+++-+..- .-...++..|.+.+
T Consensus 158 ~~fDvIi~D~~~~~~~--~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF 220 (317)
T 3gjy_A 158 ASRDVIIRDVFAGAIT--PQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVF 220 (317)
T ss_dssp TCEEEEEECCSTTSCC--CGGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHC
T ss_pred CCCCEEEECCCCcccc--chhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHC
Confidence 3679999998665422 222223689999999999999998866532 22345555555554
No 112
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana}
Probab=33.89 E-value=32 Score=26.03 Aligned_cols=44 Identities=11% Similarity=0.044 Sum_probs=25.3
Q ss_pred ceecCCceeccCCCCceeE----EecCceEEEEEeC----ceEEEEEeCCCC
Q psy13344 27 TKIKYDEYGNHSSWAYGEE----IFTGPIWKIVKEG----EEEIVYGVDFNL 70 (155)
Q Consensus 27 ~~v~Y~q~~~l~~~~~~vt----~lGGa~~~i~~~~----~~~IvytGD~~~ 70 (155)
+.+.-++.+++.+..+++. |--|++.+..... +.+++||||.-.
T Consensus 94 ~~~~~g~~~~~g~~~i~v~~tpGHt~g~~~~~~~~~~~~~~~~~lftGD~~~ 145 (245)
T 2gcu_A 94 LFLEPGDKVSIGDIYLEVRATPGHTAGCVTYVTGEGADQPQPRMAFTGDAVL 145 (245)
T ss_dssp EEECTTCEEEETTEEEEEEECCSSSTTCEEEEECCSTTSCSSCEEEEETTSB
T ss_pred EEcCCCCEEEECCEEEEEEECCCCCCCCEEEEECCccccccccEEEECCccc
Confidence 5566677777763223332 4445555554322 137999999754
No 113
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus musculus} PDB: 3rgq_A*
Probab=33.59 E-value=69 Score=21.72 Aligned_cols=35 Identities=11% Similarity=0.004 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHhCCCeEEEEeccc-HHHHHH
Q psy13344 104 RRTRDERLMTNILQTLRNNGNVLVAVDTA-GRVLEL 138 (155)
Q Consensus 104 ~~~~~~~l~~~I~~tl~~gG~VLIP~fa~-GR~qEl 138 (155)
..+...++++.|.+.++.||.|||-|.+- ||+==+
T Consensus 71 ~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~ 106 (157)
T 3rgo_A 71 TLANLHKGVQFALKYQALGQCVYVHCKAGRSRSATM 106 (157)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEESSSSSSHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEECCCCCChHHHH
Confidence 34566788899999999999999998763 477666
No 114
>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens}
Probab=33.37 E-value=59 Score=22.53 Aligned_cols=32 Identities=22% Similarity=0.140 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeccc-HHHHHH
Q psy13344 107 RDERLMTNILQTLRNNGNVLVAVDTA-GRVLEL 138 (155)
Q Consensus 107 ~~~~l~~~I~~tl~~gG~VLIP~fa~-GR~qEl 138 (155)
...+..+.|.+.++.||.|||=|.+- +|+==+
T Consensus 69 ~~~~~~~~i~~~~~~~~~VlVHC~aG~~RSg~~ 101 (160)
T 1yz4_A 69 HFKECINFIHCCRLNGGNCLVHSFAGISRSTTI 101 (160)
T ss_dssp GHHHHHHHHHHHHHTTCCEEEEETTSSSHHHHH
T ss_pred HHHHHHHHHHHHHHcCCeEEEECCCCCchHHHH
Confidence 44567788888888999999999986 887644
No 115
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=33.12 E-value=32 Score=26.70 Aligned_cols=59 Identities=17% Similarity=0.305 Sum_probs=37.3
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEec----ccHHHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVD----TAGRVLELTHMLEQL 145 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~f----a~GR~qEll~~L~~~ 145 (155)
.+.|++|++++... .+.......+|.+.+.+.|+.||.+++-+. .....+++...|.+.
T Consensus 150 ~~fD~Ii~d~~~~~--~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~ 212 (283)
T 2i7c_A 150 NTYDVIIVDSSDPI--GPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL 212 (283)
T ss_dssp SCEEEEEEECCCTT--TGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT
T ss_pred CCceEEEEcCCCCC--CcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHH
Confidence 36799999886432 222111126899999999999999988543 333444555444443
No 116
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=33.03 E-value=14 Score=25.51 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=17.5
Q ss_pred cccchhhccCCCCCCCCCCC
Q psy13344 7 ANSRFFKSNKKQFPMFPFHE 26 (155)
Q Consensus 7 ~~~~~~~~~~~~~p~yt~~D 26 (155)
-...||+..++++|.||.+|
T Consensus 67 Lk~~~y~eVq~dWp~Yte~e 86 (104)
T 2doa_A 67 LQDCMYKDVQKDWPGYSEGD 86 (104)
T ss_dssp CCSSGGGGCCSCCTTCCSHH
T ss_pred ehHHHHHHhcCCCCCCCHHH
Confidence 34579999999999999988
No 117
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=32.25 E-value=50 Score=24.83 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=34.9
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQL 145 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~ 145 (155)
...|++++......-. + ...++..+.++|+.||.+++-....+...++...+...
T Consensus 116 ~~fD~v~~~~~l~~~~-----d-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 170 (279)
T 3ccf_A 116 KPLDAVFSNAMLHWVK-----E-PEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNA 170 (279)
T ss_dssp SCEEEEEEESCGGGCS-----C-HHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHH
T ss_pred CCcCEEEEcchhhhCc-----C-HHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHH
Confidence 3579998865443211 1 24678889999999999998665544434444444433
No 118
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus}
Probab=32.12 E-value=1.7e+02 Score=22.25 Aligned_cols=98 Identities=13% Similarity=-0.021 Sum_probs=51.3
Q ss_pred ceecCCceeccCCCCceeE----EecCceEEEEEeCceEEEEEeCCCCCCCCccCCCccCCCCCCcEEEEcCCCCCcCCC
Q psy13344 27 TKIKYDEYGNHSSWAYGEE----IFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQA 102 (155)
Q Consensus 27 ~~v~Y~q~~~l~~~~~~vt----~lGGa~~~i~~~~~~~IvytGD~~~~~~~~l~~~~l~~~~~~D~LI~EsTyg~~~~~ 102 (155)
..+.-++.+++.+..+++. |-.|++.+.. ...+++||||.-..... +. +. .+....
T Consensus 148 ~~~~~g~~l~~gg~~~~~i~tpGHt~g~~~~~~--~~~~~lf~GD~~~~~~~-------~~---~~------~~~~~~-- 207 (317)
T 2zo4_A 148 LPLRDGEALEVAGKRLRVLWTPGHADGHAAFYL--EEEGVLLAGDALLEKVS-------PN---VG------LWAYTR-- 207 (317)
T ss_dssp EEECTTCEEEETTEEEEEEECCSSSTTCEEEEE--TTTTEEEEETSCCSSSC-------CC---CC------CCTTSC--
T ss_pred eEECCCCEEEeCCceEEEEECCCCCcccEEEEe--CCCCEEEECCEecCCCC-------CC---Cc------ccCCCC--
Confidence 5566677777763223333 5555555544 34689999996543210 00 00 000000
Q ss_pred ChhHHHHHHHHHHHHHHhCCCeEEEEecc------cHHHHHHHHHHHHHH
Q psy13344 103 RRRTRDERLMTNILQTLRNNGNVLVAVDT------AGRVLELTHMLEQLW 146 (155)
Q Consensus 103 ~~~~~~~~l~~~I~~tl~~gG~VLIP~fa------~GR~qEll~~L~~~~ 146 (155)
......+.+.+.+..+-+-.+++|..- -.|++|++....+..
T Consensus 208 --~~~~~~~~~sl~~l~~l~~~~v~pgHg~~~~~~~~~i~~~~~~~~~~~ 255 (317)
T 2zo4_A 208 --ENPLKDFLRSLDRLADLGARVAYAGHFGPIADVRQRAEELKAHHQARL 255 (317)
T ss_dssp --SCHHHHHHHHHHHHHTSCCSEEEESSSSCBSCHHHHHHHHHHHHHHHH
T ss_pred --CchHHHHHHHHHHHhcCCCCEEECCCCCccCCHHHHHHHHHHHHHHHH
Confidence 113345666666666667788888752 235566665544443
No 119
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=32.03 E-value=14 Score=26.54 Aligned_cols=51 Identities=10% Similarity=0.161 Sum_probs=37.0
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQ 144 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~ 144 (155)
...|++++...+ .....+++.+.+.|+.||.+++-.+......++...+.+
T Consensus 124 ~~fD~i~~~~~~---------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~ 174 (205)
T 3grz_A 124 GKFDLIVANILA---------EILLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAE 174 (205)
T ss_dssp SCEEEEEEESCH---------HHHHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHH
T ss_pred CCceEEEECCcH---------HHHHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHH
Confidence 467888876322 234678888889999999999976666677777666654
No 120
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=32.02 E-value=18 Score=29.14 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=41.2
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEE----EecccHHHHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV----AVDTAGRVLELTHMLEQLW 146 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLI----P~fa~GR~qEll~~L~~~~ 146 (155)
.+.|++|++++-.... +..--..+|.+.+.+.|+.||.+.. |.+.......++..|.+.+
T Consensus 156 ~~yDvIi~D~~dp~~~--~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~F 219 (294)
T 3o4f_A 156 QTFDVIISDCTDPIGP--GESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYF 219 (294)
T ss_dssp CCEEEEEESCCCCCCT--TCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHHC
T ss_pred ccCCEEEEeCCCcCCC--chhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhhC
Confidence 4679999999865432 2222346899999999999999875 4455555555555555544
No 121
>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics, phosphatase, PSI-2, protein structure initiative; 1.60A {Homo sapiens}
Probab=31.96 E-value=44 Score=22.94 Aligned_cols=31 Identities=23% Similarity=0.152 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeccc-HHHHHH
Q psy13344 108 DERLMTNILQTLRNNGNVLVAVDTA-GRVLEL 138 (155)
Q Consensus 108 ~~~l~~~I~~tl~~gG~VLIP~fa~-GR~qEl 138 (155)
..+..+.|.+.+++||.|||=|.+- +|+==+
T Consensus 76 ~~~~~~~i~~~~~~~~~vlvHC~aG~~RS~~~ 107 (154)
T 2r0b_A 76 FPMTKEFIDGSLQMGGKVLVHGNAGISRSAAF 107 (154)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECSSSSSHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCChHHHH
Confidence 3556778888888999999999986 787654
No 122
>2hxp_A Dual specificity protein phosphatase 9; human phosphatase, structural genomics, PSI-2, protein structure initiative; 1.83A {Homo sapiens} PDB: 3lj8_A 1mkp_A
Probab=31.82 E-value=51 Score=22.90 Aligned_cols=32 Identities=25% Similarity=0.197 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeccc-HHHHHHH
Q psy13344 108 DERLMTNILQTLRNNGNVLVAVDTA-GRVLELT 139 (155)
Q Consensus 108 ~~~l~~~I~~tl~~gG~VLIP~fa~-GR~qEll 139 (155)
..+.++.|.+.+++||.|||=|.+- +|+==++
T Consensus 71 ~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~vv 103 (155)
T 2hxp_A 71 FPEAIEFIDEALSQNCGVLVHSLAGVSRSVTVT 103 (155)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEECCCCCchhHHHH
Confidence 4566788888889999999999886 8876553
No 123
>2j16_A SDP-1, tyrosine-protein phosphatase YIL113W; hydrolase, hypothetical protein; 2.7A {Saccharomyces cerevisiae} PDB: 2j17_A* 2j16_B
Probab=31.73 E-value=47 Score=24.30 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEeccc-HHHHHH
Q psy13344 106 TRDERLMTNILQTLRNNGNVLVAVDTA-GRVLEL 138 (155)
Q Consensus 106 ~~~~~l~~~I~~tl~~gG~VLIP~fa~-GR~qEl 138 (155)
....+.++.|.+.+++||+|||-|.+- ||+--+
T Consensus 101 ~~~~~~~~fI~~~~~~g~~VLVHC~~G~sRS~tv 134 (182)
T 2j16_A 101 LDLPSLTSIIHAATTKREKILIHAQCGLSRSATL 134 (182)
T ss_dssp GGHHHHHHHHHHHHHTTCCEEEEESSCCSHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH
Confidence 345677888899999999999999875 776654
No 124
>2oud_A Dual specificity protein phosphatase 10; A central five-stranded B-sheet, hydrolase; 2.80A {Homo sapiens}
Probab=31.20 E-value=82 Score=22.34 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEeccc-HHHHHHH
Q psy13344 106 TRDERLMTNILQTLRNNGNVLVAVDTA-GRVLELT 139 (155)
Q Consensus 106 ~~~~~l~~~I~~tl~~gG~VLIP~fa~-GR~qEll 139 (155)
....+..+.|.+.+++||.|||-|.+- ||+==+.
T Consensus 71 ~~~~~~~~~i~~~~~~~~~VlVHC~aG~~RSg~~v 105 (177)
T 2oud_A 71 QYFEEAFEFIEEAHQCGKGLLIHCQAGVSRSATIV 105 (177)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEcCCCCCchHHHH
Confidence 345667788888888999999999886 7876653
No 125
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=30.92 E-value=70 Score=24.04 Aligned_cols=50 Identities=10% Similarity=0.084 Sum_probs=37.5
Q ss_pred CCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHH
Q psy13344 86 RPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQ 144 (155)
Q Consensus 86 ~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~ 144 (155)
..|++|.... ......++..+.+.|+.||.+++-.....+..++...+.+
T Consensus 184 ~fD~Vv~n~~---------~~~~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~ 233 (254)
T 2nxc_A 184 PFDLLVANLY---------AELHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAG 233 (254)
T ss_dssp CEEEEEEECC---------HHHHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHH
T ss_pred CCCEEEECCc---------HHHHHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHH
Confidence 5788887531 2235678889999999999999977766777777776654
No 126
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A
Probab=30.91 E-value=29 Score=26.06 Aligned_cols=38 Identities=11% Similarity=-0.006 Sum_probs=22.8
Q ss_pred ceeccCCCCceeE----EecCceEEEEEeC-ceEEEEEeCCCCC
Q psy13344 33 EYGNHSSWAYGEE----IFTGPIWKIVKEG-EEEIVYGVDFNLK 71 (155)
Q Consensus 33 q~~~l~~~~~~vt----~lGGa~~~i~~~~-~~~IvytGD~~~~ 71 (155)
+.+++.+ .+++. |-.|++.+....+ +++++|+||.-..
T Consensus 169 ~~~~l~g-~~~v~~~pGHt~g~~~~~~~~~~~~~~lf~GD~~~~ 211 (274)
T 3aj3_A 169 GDVDLAR-GVKLISTPGHSIGHYSLLVEFPRRKPILFTIDAAYT 211 (274)
T ss_dssp SSEEEET-TEEEEECTTSSTTCEEEEECCSSSCCEEEEETTCSS
T ss_pred CccccCC-EEEEEECCCCCceeeEEEEECCCCCEEEEEechhhh
Confidence 4566642 35555 5555555555323 4789999996654
No 127
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens}
Probab=30.64 E-value=32 Score=26.27 Aligned_cols=40 Identities=10% Similarity=0.023 Sum_probs=24.7
Q ss_pred ceecCCceeccCCCCceeE----EecCceEEEEEeCceEEEEEeCC
Q psy13344 27 TKIKYDEYGNHSSWAYGEE----IFTGPIWKIVKEGEEEIVYGVDF 68 (155)
Q Consensus 27 ~~v~Y~q~~~l~~~~~~vt----~lGGa~~~i~~~~~~~IvytGD~ 68 (155)
+.+.-++.+++.+..+++. |-.|++.+.. ...+++||||.
T Consensus 123 ~~~~~g~~~~~gg~~~~~~~~pGHt~~~~~~~~--~~~~~lftGD~ 166 (289)
T 4ad9_A 123 VYLKDGDVIKTEGATLRVLYTPGHTDDHMALLL--EEENAIFSGDC 166 (289)
T ss_dssp EECCTTCEEEETTEEEEEEECCSSSTTCEEEEE--TTTTEEEEETS
T ss_pred EEcCCCCEEEeCCeEEEEEECCCCCCCCEEEEE--cCCCEEEEecc
Confidence 5667777777763223332 5555555555 23569999995
No 128
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=30.56 E-value=25 Score=25.78 Aligned_cols=49 Identities=16% Similarity=0.161 Sum_probs=36.3
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQ 144 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~ 144 (155)
...|+++.... . ...+++.+.+.|+.||.+++-.......+++...|.+
T Consensus 157 ~~~D~v~~~~~-----~------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~ 205 (248)
T 2yvl_A 157 GIFHAAFVDVR-----E------PWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIEN 205 (248)
T ss_dssp TCBSEEEECSS-----C------GGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTT
T ss_pred CcccEEEECCc-----C------HHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 36899987321 1 1345677789999999999988888888888777654
No 129
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=30.46 E-value=79 Score=25.93 Aligned_cols=44 Identities=11% Similarity=0.022 Sum_probs=32.1
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhC--CCeEEEEec
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN--NGNVLVAVD 130 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~--gG~VLIP~f 130 (155)
...|++|++-.||.+.. .+....+|...+.++++. ||++.|-+-
T Consensus 306 ~~fD~Iv~NPPYg~rl~--~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 351 (393)
T 3k0b_A 306 DEYGVVVANPPYGERLE--DEEAVRQLYREMGIVYKRMPTWSVYVLTS 351 (393)
T ss_dssp CCSCEEEECCCCCCSHH--HHHHHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred CCCCEEEECCCCccccC--CchhHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 36899999999998742 234456677788888876 888777543
No 130
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=30.36 E-value=39 Score=23.44 Aligned_cols=38 Identities=11% Similarity=0.282 Sum_probs=27.2
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEE
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLI 127 (155)
...|++++......-. +. ..+++..+.++|+.||.+++
T Consensus 62 ~~fD~V~~~~~l~~~~-~~----~~~~l~~~~r~LkpgG~l~~ 99 (176)
T 2ld4_A 62 SSFDIILSGLVPGSTT-LH----SAEILAEIARILRPGGCLFL 99 (176)
T ss_dssp SCEEEEEECCSTTCCC-CC----CHHHHHHHHHHEEEEEEEEE
T ss_pred CCEeEEEECChhhhcc-cC----HHHHHHHHHHHCCCCEEEEE
Confidence 3579999765443320 11 15788899999999999998
No 131
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=30.27 E-value=25 Score=23.94 Aligned_cols=40 Identities=15% Similarity=0.039 Sum_probs=26.8
Q ss_pred CCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecc
Q psy13344 86 RPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDT 131 (155)
Q Consensus 86 ~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa 131 (155)
..|++++...|. .. ..+..+.+.+ .+.|+.||.+++-+..
T Consensus 110 ~~D~i~~~~~~~--~~--~~~~~~~~~~--~~~L~~gG~~~~~~~~ 149 (171)
T 1ws6_A 110 RFTVAFMAPPYA--MD--LAALFGELLA--SGLVEAGGLYVLQHPK 149 (171)
T ss_dssp CEEEEEECCCTT--SC--TTHHHHHHHH--HTCEEEEEEEEEEEET
T ss_pred ceEEEEECCCCc--hh--HHHHHHHHHh--hcccCCCcEEEEEeCC
Confidence 589999998887 21 2233333333 4889999999886654
No 132
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=30.22 E-value=92 Score=24.72 Aligned_cols=39 Identities=10% Similarity=0.128 Sum_probs=28.5
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEE
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLI 127 (155)
...|++++-....+ .+ .....++++.+.+.|+.||.++|
T Consensus 247 ~~~D~v~~~~vlh~--~~--~~~~~~~l~~~~~~L~pgG~l~i 285 (363)
T 3dp7_A 247 TGFDAVWMSQFLDC--FS--EEEVISILTRVAQSIGKDSKVYI 285 (363)
T ss_dssp CCCSEEEEESCSTT--SC--HHHHHHHHHHHHHHCCTTCEEEE
T ss_pred CCcCEEEEechhhh--CC--HHHHHHHHHHHHHhcCCCcEEEE
Confidence 36899888665432 11 23445788899999999999998
No 133
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0
Probab=30.17 E-value=40 Score=24.28 Aligned_cols=39 Identities=8% Similarity=-0.175 Sum_probs=23.2
Q ss_pred ceecCCceeccCCCCceeE-------EecCceEEEEEeCceEEEEEeCCC
Q psy13344 27 TKIKYDEYGNHSSWAYGEE-------IFTGPIWKIVKEGEEEIVYGVDFN 69 (155)
Q Consensus 27 ~~v~Y~q~~~l~~~~~~vt-------~lGGa~~~i~~~~~~~IvytGD~~ 69 (155)
..++-++.+.+.+ .+++ |-.|+..... ...+++||||.-
T Consensus 115 ~~~~~g~~~~~g~--~~i~~~~~~pgHt~g~~~~~~--~~~~~lf~GD~~ 160 (219)
T 3l6n_A 115 EIIKTGKPYRIGG--EEFVVDFLGEGHTADNVVVWF--PKYNVLDGGCLV 160 (219)
T ss_dssp EECCTTSEEEETT--EEEEEECCCCSSSSSCCEEEE--TTTTEEEEETTS
T ss_pred EecCCCCEEEECC--EEEEEEeCCCCCCCCCEEEEE--CCCCEEEECCee
Confidence 4455666666653 3333 4445555444 245799999964
No 134
>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein dual-specificity phosphatase, inhibitor; HET: STT; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1vhr_A* 1j4x_A*
Probab=29.92 E-value=72 Score=22.53 Aligned_cols=32 Identities=34% Similarity=0.288 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhC-CCeEEEEeccc-HHHHH
Q psy13344 106 TRDERLMTNILQTLRN-NGNVLVAVDTA-GRVLE 137 (155)
Q Consensus 106 ~~~~~l~~~I~~tl~~-gG~VLIP~fa~-GR~qE 137 (155)
....+.++.|.+.+++ ||.|||-|.+- ||+==
T Consensus 98 ~~~~~~~~~i~~~~~~~~~~VlVHC~~G~~RSg~ 131 (183)
T 3f81_A 98 AYFERAADFIDQALAQKNGRVLVHCREGYSRSPT 131 (183)
T ss_dssp GGHHHHHHHHHHHHHSTTCCEEEECSSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEECCCCcchHHH
Confidence 4457788899999988 99999999873 68765
No 135
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=29.66 E-value=30 Score=26.07 Aligned_cols=49 Identities=14% Similarity=0.187 Sum_probs=37.6
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQ 144 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~ 144 (155)
...|++++... ++ .++++.+.+.|+.||.+++-+......++++..|.+
T Consensus 170 ~~~D~v~~~~~-----~~------~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~ 218 (280)
T 1i9g_A 170 GSVDRAVLDML-----AP------WEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRA 218 (280)
T ss_dssp TCEEEEEEESS-----CG------GGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred CceeEEEECCc-----CH------HHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 35799988421 11 256788899999999999988888888888887765
No 136
>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein, structural genomics, NPPSFA, project on protein structural and functional analyses; 1.67A {Homo sapiens}
Probab=29.60 E-value=76 Score=21.55 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHh-CCCeEEEEeccc-HHHHHH
Q psy13344 107 RDERLMTNILQTLR-NNGNVLVAVDTA-GRVLEL 138 (155)
Q Consensus 107 ~~~~l~~~I~~tl~-~gG~VLIP~fa~-GR~qEl 138 (155)
...++.+.|.+.++ .+|.|||-|.+- ||+==+
T Consensus 69 ~~~~~~~~i~~~~~~~~~~vlVHC~aG~~RSg~~ 102 (151)
T 2e0t_A 69 HFQTAADFIHRALSQPGGKILVHCAVGVSRSATL 102 (151)
T ss_dssp HHHHHHHHHHHHHHSTTCCEEEECSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcEEEECCCCCChHHHH
Confidence 44667788888888 799999999986 887754
No 137
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=29.45 E-value=24 Score=25.43 Aligned_cols=44 Identities=5% Similarity=0.110 Sum_probs=30.9
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecc
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDT 131 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa 131 (155)
...|++++...... -+.......+++.+.+.|+.||.++|-.+.
T Consensus 100 ~~~D~v~~~~~l~~---~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 143 (235)
T 3sm3_A 100 SSFDFAVMQAFLTS---VPDPKERSRIIKEVFRVLKPGAYLYLVEFG 143 (235)
T ss_dssp TCEEEEEEESCGGG---CCCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred CceeEEEEcchhhc---CCCHHHHHHHHHHHHHHcCCCeEEEEEECC
Confidence 46899998654432 222334457899999999999999986553
No 138
>3cm3_A Late protein H1, dual specificity protein phosphatase; dual-specificity phosphatase, VH1, hydrolase; 1.32A {Vaccinia virus} PDB: 2rf6_A 2p4d_A
Probab=29.19 E-value=59 Score=23.04 Aligned_cols=33 Identities=15% Similarity=0.084 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeccc-HHHHHHH
Q psy13344 107 RDERLMTNILQTLRNNGNVLVAVDTA-GRVLELT 139 (155)
Q Consensus 107 ~~~~l~~~I~~tl~~gG~VLIP~fa~-GR~qEll 139 (155)
...+.++.|.+.+++||.|||=|.+- ||+==++
T Consensus 93 ~~~~~~~~i~~~~~~~~~VlVHC~aG~~RSg~~v 126 (176)
T 3cm3_A 93 YFDDVTAFLSKCDQRNEPVLVHSAAGVNRSGAMI 126 (176)
T ss_dssp GHHHHHHHHHHHHHHTCCEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcEEEECCcCCCHHHHHH
Confidence 35677788888888899999999875 7876544
No 139
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase; 2.70A {Homo sapiens}
Probab=29.15 E-value=66 Score=24.12 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEeccc-HHHHHH
Q psy13344 106 TRDERLMTNILQTLRNNGNVLVAVDTA-GRVLEL 138 (155)
Q Consensus 106 ~~~~~l~~~I~~tl~~gG~VLIP~fa~-GR~qEl 138 (155)
+...+.++.|.+.+++||+|||=|.+- ||+==+
T Consensus 67 ~~~~~~~~fI~~~~~~~~~VLVHC~aG~sRSgtv 100 (211)
T 2g6z_A 67 SHFQEAIDFIDCVREKGGKVLVHSEAGISRSPTI 100 (211)
T ss_dssp GGHHHHHHHHHHHHHTTCCEEEEESSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEECCCCCCcHHHH
Confidence 345677788888889999999999876 787543
No 140
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=28.04 E-value=42 Score=26.95 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=29.0
Q ss_pred CCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEE
Q psy13344 86 RPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVA 128 (155)
Q Consensus 86 ~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP 128 (155)
..|++|++++-.. +++......+|.+.+.+.|+.||.+++-
T Consensus 194 ~fDlIi~d~~~p~--~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 194 SYDAVIVDSSDPI--GPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp CEEEEEECCCCTT--SGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEECCCCcc--CcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 5799999875322 2212222368999999999999999983
No 141
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=28.03 E-value=47 Score=27.51 Aligned_cols=61 Identities=13% Similarity=0.180 Sum_probs=34.9
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHH----HHHHhCCCeEEEEecccHHHHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNI----LQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I----~~tl~~gG~VLIP~fa~GR~qEll~~L~~~~ 146 (155)
.+.|++|++++.......+..-...+|.+.+ .+.|+.||.+++-+-+.- ..|++.++++.+
T Consensus 266 ~~fDvII~D~~d~P~~~~p~~L~t~eFy~~~~~~~~~~L~pgGilv~qs~s~~-~~e~~~~~~~~l 330 (364)
T 2qfm_A 266 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVN-LTEALSLYEEQL 330 (364)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETT-CHHHHHHHHHHH
T ss_pred CCceEEEECCCCcccCcCchhhhHHHHHHHHHHHHHhhCCCCcEEEEEcCCcc-hHHHHHHHHHHH
Confidence 4689999999872211111111224566665 889999999887543322 255555555433
No 142
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A*
Probab=28.01 E-value=44 Score=25.54 Aligned_cols=43 Identities=23% Similarity=0.029 Sum_probs=24.3
Q ss_pred ceecCCceeccCCCCceeE----EecCceEEEE-Ee--CceEEEEEeCCC
Q psy13344 27 TKIKYDEYGNHSSWAYGEE----IFTGPIWKIV-KE--GEEEIVYGVDFN 69 (155)
Q Consensus 27 ~~v~Y~q~~~l~~~~~~vt----~lGGa~~~i~-~~--~~~~IvytGD~~ 69 (155)
..+.-++.+++.+..+++. |-.|++.+.. .. ...+++||||.-
T Consensus 87 ~~~~~g~~~~~g~~~~~vi~tPGHt~g~~~~~~~~~~~~~~~~lftGD~l 136 (260)
T 1qh5_A 87 HKITHLSTLQVGSLNVKCLATPCHTSGHICYFVSKPGGSEPPAVFTGDTL 136 (260)
T ss_dssp EECCTTCEEEETTEEEEEEECCSSSTTCEEEEEECSSSSSCCEEEEETTE
T ss_pred EEeCCCCEEEECCEEEEEEECCCCCCCCEEEEEeccCCCCCCEEEEcCcc
Confidence 4556666777763223332 3335555444 22 347899999964
No 143
>1exe_A Transcription factor 1; beta ribbon ARMS, DNA-binding, DNA-bending protein; NMR {Bacillus phage SPO1} SCOP: a.55.1.1 PDB: 1wtu_A
Probab=27.62 E-value=21 Score=23.62 Aligned_cols=27 Identities=11% Similarity=-0.048 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHhCCCeEEEEec
Q psy13344 104 RRTRDERLMTNILQTLRNNGNVLVAVD 130 (155)
Q Consensus 104 ~~~~~~~l~~~I~~tl~~gG~VLIP~f 130 (155)
-....+.|.+.|.+.|..|+.|-||-|
T Consensus 21 ~~~~l~~~~~~i~~~L~~G~~V~l~gf 47 (99)
T 1exe_A 21 VSKMLASFEKIITETVAKGDKVQLTGF 47 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCBTTT
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEECCc
Confidence 356778999999999999999988765
No 144
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=27.07 E-value=1.3e+02 Score=22.85 Aligned_cols=54 Identities=9% Similarity=-0.034 Sum_probs=35.7
Q ss_pred CCCcEEEEcCC-------CCCcCCCC----hhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHH
Q psy13344 85 IRPTVVITDTM-------SAIYQQAR----RRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHML 142 (155)
Q Consensus 85 ~~~D~LI~EsT-------yg~~~~~~----~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L 142 (155)
.++|-||+-.- ||...++. ...++...++.|++.+++| +|++.+.|...+|..-
T Consensus 60 ~~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~----~PiLGIC~G~Qll~~a 124 (254)
T 3fij_A 60 SLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAG----KPIFAICRGMQLVNVA 124 (254)
T ss_dssp HTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTT----CCEEEETHHHHHHHHH
T ss_pred hhCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcC----CCEEEECHHHHHHHHH
Confidence 35776666433 65544332 2455555678888888876 7999999988887653
No 145
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=26.75 E-value=40 Score=24.53 Aligned_cols=40 Identities=5% Similarity=-0.115 Sum_probs=23.1
Q ss_pred ceecCCceeccCCCCceeE-------EecCceEEEEEeCceEEEEEeCCCC
Q psy13344 27 TKIKYDEYGNHSSWAYGEE-------IFTGPIWKIVKEGEEEIVYGVDFNL 70 (155)
Q Consensus 27 ~~v~Y~q~~~l~~~~~~vt-------~lGGa~~~i~~~~~~~IvytGD~~~ 70 (155)
..+.-++.+++.+ .+++ |-.|+..+.. ...+++|+||+-.
T Consensus 111 ~~~~~g~~~~~g~--~~i~~~~~~pgHt~~~~~~~~--~~~~~lf~GD~~~ 157 (223)
T 1m2x_A 111 YTFDNNKSFKVGK--SEFQVYYPGKGHTADNVVVWF--PKEKVLVGGCIIK 157 (223)
T ss_dssp EEESSCEEEEETT--EEEEEECCCSSSSSSCCEEEE--TTTTEEEEETTSC
T ss_pred eecCCCceEEECC--EEEEEEecCCCCCCCCEEEEE--CCCCEEEEecccc
Confidence 4455566666652 3333 3345555554 2468999999553
No 146
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=26.71 E-value=56 Score=24.92 Aligned_cols=47 Identities=9% Similarity=0.106 Sum_probs=32.0
Q ss_pred CCCcEEEEcCCCCCcCCCC---hhHHHHHHHHHHHHHHhCCCeEEEEecc
Q psy13344 85 IRPTVVITDTMSAIYQQAR---RRTRDERLMTNILQTLRNNGNVLVAVDT 131 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~---~~~~~~~l~~~I~~tl~~gG~VLIP~fa 131 (155)
...|++++......-..+. ..+....+++.+.+.|+.||.++|-.+.
T Consensus 136 ~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 185 (302)
T 3hem_A 136 EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT 185 (302)
T ss_dssp CCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEE
T ss_pred CCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 3689888875543322220 1244568899999999999999986554
No 147
>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase, dual specifici phosphatase; 1.88A {Homo sapiens}
Probab=26.55 E-value=84 Score=22.70 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEeccc-HHHHHH
Q psy13344 107 RDERLMTNILQTLRNNGNVLVAVDTA-GRVLEL 138 (155)
Q Consensus 107 ~~~~l~~~I~~tl~~gG~VLIP~fa~-GR~qEl 138 (155)
...+..+.|.+.++.||.|||-|.+- ||+==+
T Consensus 88 ~~~~~~~fi~~~~~~~~~VlVHC~aG~~RSgtv 120 (190)
T 2wgp_A 88 YFDTVADKIHSVSRKHGATLVHCAAGVSRSATL 120 (190)
T ss_dssp GHHHHHHHHHHHHHTTCCEEEECSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 34567788888888999999999886 787654
No 148
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=26.43 E-value=85 Score=24.35 Aligned_cols=39 Identities=10% Similarity=0.030 Sum_probs=28.7
Q ss_pred CCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEE
Q psy13344 86 RPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVA 128 (155)
Q Consensus 86 ~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP 128 (155)
..|++++-....+ . ......++++.+.+.|+.||.++|-
T Consensus 235 ~~D~v~~~~vlh~--~--~~~~~~~~l~~~~~~L~pgG~l~i~ 273 (332)
T 3i53_A 235 GAGGYVLSAVLHD--W--DDLSAVAILRRCAEAAGSGGVVLVI 273 (332)
T ss_dssp SCSEEEEESCGGG--S--CHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred CCcEEEEehhhcc--C--CHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 6899988665432 1 1334567889999999999999983
No 149
>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle structural genomics center for infectious disease, magnesium, metal binding; HET: AMP; 2.30A {Burkholderia pseudomallei}
Probab=26.33 E-value=1.1e+02 Score=24.65 Aligned_cols=46 Identities=13% Similarity=0.144 Sum_probs=29.4
Q ss_pred CCCCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCC----eEEEEecccHH
Q psy13344 83 RFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNG----NVLVAVDTAGR 134 (155)
Q Consensus 83 ~~~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG----~VLIP~fa~GR 134 (155)
.++..|++|+-||+. |..+..=+|+- +.+++++.| +++||.|+..|
T Consensus 51 svrg~dV~iiqs~~~-----p~nd~lmeLl~-~idA~k~asA~rIt~ViPY~~YaR 100 (319)
T 3dah_A 51 NVRGKDVFVLQSTCA-----PTNDNLMELMI-MVDALKRASAGRITAAIPYFGYAR 100 (319)
T ss_dssp CCBTCEEEEECCCCS-----SHHHHHHHHHH-HHHHHHHTTBSEEEEEESSCTTTT
T ss_pred CcCCCeEEEEccCCC-----CCcHHHHHHHH-HHHHHHHcCCcEEEEEccCccccc
Confidence 345689999988874 22333333332 245555555 89999999876
No 150
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=25.97 E-value=32 Score=27.13 Aligned_cols=45 Identities=18% Similarity=0.133 Sum_probs=30.9
Q ss_pred CCCcEEEEcCCCCCcC-CCChhHHHHHHHHHHHHHHhCCCeEEEEe
Q psy13344 85 IRPTVVITDTMSAIYQ-QARRRTRDERLMTNILQTLRNNGNVLVAV 129 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~-~~~~~~~~~~l~~~I~~tl~~gG~VLIP~ 129 (155)
.+.|++|++++..... .++......+|.+.+.+.|+.||.+++-+
T Consensus 150 ~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 150 ERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp CCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 3679999998663311 11112223689999999999999998854
No 151
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=25.93 E-value=76 Score=22.99 Aligned_cols=42 Identities=5% Similarity=0.093 Sum_probs=30.1
Q ss_pred CCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecc
Q psy13344 86 RPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDT 131 (155)
Q Consensus 86 ~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa 131 (155)
..|++++-.....- + .+....+++.+.+.|+.||.+++-.+.
T Consensus 132 ~fD~v~~~~~l~~~---~-~~~~~~~l~~~~~~LkpgG~l~~~~~~ 173 (235)
T 3lcc_A 132 LFDLIFDYVFFCAI---E-PEMRPAWAKSMYELLKPDGELITLMYP 173 (235)
T ss_dssp CEEEEEEESSTTTS---C-GGGHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CeeEEEEChhhhcC---C-HHHHHHHHHHHHHHCCCCcEEEEEEec
Confidence 67999986655432 1 233467888999999999999985543
No 152
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=25.86 E-value=57 Score=25.96 Aligned_cols=41 Identities=10% Similarity=0.025 Sum_probs=25.1
Q ss_pred ceecCCceeccCCCCceeE-----EecCceEEEEEeCceEEEEEeCCC
Q psy13344 27 TKIKYDEYGNHSSWAYGEE-----IFTGPIWKIVKEGEEEIVYGVDFN 69 (155)
Q Consensus 27 ~~v~Y~q~~~l~~~~~~vt-----~lGGa~~~i~~~~~~~IvytGD~~ 69 (155)
+.++-++.+++.+..+++. |--|+..+.. ...+++||||.-
T Consensus 122 ~~~~~g~~~~~g~~~~~~~~~p~gH~~~~~~~~~--~~~~~l~~GD~~ 167 (402)
T 1e5d_A 122 QVVKHGETLSLGKRTVTFYETRMLHWPDSMVSWF--ADEKVLISNDIF 167 (402)
T ss_dssp EEECTTCEEECSSCEEEEEECTTSSSTTCEEEEE--TTTTEEEEETTT
T ss_pred EEcCCCCEEEECCCEEEEEeCCCCCCCCcEEEEE--CCCCEEEecccc
Confidence 5666777787763223332 3345555444 346899999984
No 153
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=25.60 E-value=40 Score=24.73 Aligned_cols=39 Identities=21% Similarity=0.333 Sum_probs=28.5
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecc
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDT 131 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa 131 (155)
...|+++++.. . .+....++..+.+.|+.||.++|-+.+
T Consensus 146 ~~~D~V~~~~~-----~---~~~~~~~~~~~~~~LkpgG~l~i~~~~ 184 (233)
T 2ipx_A 146 AMVDVIFADVA-----Q---PDQTRIVALNAHTFLRNGGHFVISIKA 184 (233)
T ss_dssp CCEEEEEECCC-----C---TTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred CcEEEEEEcCC-----C---ccHHHHHHHHHHHHcCCCeEEEEEEcc
Confidence 36799998544 1 234456777899999999999996554
No 154
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=25.51 E-value=32 Score=25.48 Aligned_cols=40 Identities=10% Similarity=-0.061 Sum_probs=24.4
Q ss_pred ceecCCceeccCCCCceeE-----EecCceEEEEEeCceEEEEEeCCCC
Q psy13344 27 TKIKYDEYGNHSSWAYGEE-----IFTGPIWKIVKEGEEEIVYGVDFNL 70 (155)
Q Consensus 27 ~~v~Y~q~~~l~~~~~~vt-----~lGGa~~~i~~~~~~~IvytGD~~~ 70 (155)
..+.-++.+++. ++++. |--|+..+... ..+++||||.-.
T Consensus 140 ~~~~~g~~~~~g--~~~v~~~~pGHt~g~~~~~~~--~~~~lf~GD~~~ 184 (243)
T 4hl2_A 140 GWVEPATAPNFG--PLKVFYPGPGHTSDNITVGID--GTDIAFGGCLIK 184 (243)
T ss_dssp SBBCGGGSTTCT--TEEEECCCSSSSTTCCEEEET--TTTEEECTTTCC
T ss_pred eEecCCCeEEEC--CEEEEeCCCCCCcCCEEEEEc--CCCEEEEcceee
Confidence 445555666665 34443 65666665552 467999999654
No 155
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A
Probab=25.42 E-value=44 Score=25.39 Aligned_cols=42 Identities=10% Similarity=-0.040 Sum_probs=23.9
Q ss_pred ceecCCceeccCCCCceeE----EecCceEEEEEeCceEEEEEeCCCC
Q psy13344 27 TKIKYDEYGNHSSWAYGEE----IFTGPIWKIVKEGEEEIVYGVDFNL 70 (155)
Q Consensus 27 ~~v~Y~q~~~l~~~~~~vt----~lGGa~~~i~~~~~~~IvytGD~~~ 70 (155)
..+.-++.+++.+..+++. |-.|++.+... ..+++||||.-.
T Consensus 89 ~~~~~g~~~~lg~~~~~vi~tPGHt~g~~~~~~~--~~~~lftGD~l~ 134 (254)
T 1xm8_A 89 MALKDGDKWMFAGHEVHVMDTPGHTKGHISLYFP--GSRAIFTGDTMF 134 (254)
T ss_dssp EEECTTCEEEETTEEEEEEECCSSSSSCEEEEEG--GGTEEEEETTEE
T ss_pred eeeCCCCEEEECCEEEEEEECCCCCCCcEEEEEC--CCCEEEEcCccc
Confidence 4455566666653222222 55556555542 357999999743
No 156
>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES; 1.50A {Homo sapiens}
Probab=25.34 E-value=94 Score=21.65 Aligned_cols=31 Identities=16% Similarity=0.085 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeccc-HHHHHH
Q psy13344 108 DERLMTNILQTLRNNGNVLVAVDTA-GRVLEL 138 (155)
Q Consensus 108 ~~~l~~~I~~tl~~gG~VLIP~fa~-GR~qEl 138 (155)
..+.++.|.+.+.+||.|||=|.+- +|+==+
T Consensus 69 ~~~~~~fi~~~~~~~~~VlVHC~aG~~RSg~~ 100 (165)
T 1wrm_A 69 FKESIKFIHECRLRGESCLVHCLAGVSRSVTL 100 (165)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEEECCCCCChhHHH
Confidence 4556678888888999999999886 787664
No 157
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}
Probab=25.29 E-value=72 Score=26.59 Aligned_cols=42 Identities=7% Similarity=-0.055 Sum_probs=26.5
Q ss_pred CceecCCceeccCCCCceeE------EecCceEEEEEe-----CceEEEEEeCCC
Q psy13344 26 ETKIKYDEYGNHSSWAYGEE------IFTGPIWKIVKE-----GEEEIVYGVDFN 69 (155)
Q Consensus 26 D~~v~Y~q~~~l~~~~~~vt------~lGGa~~~i~~~-----~~~~IvytGD~~ 69 (155)
++.+.-++.+++. +.+++ |--|+..+.... ++.+++||||.=
T Consensus 119 ~~~~~~g~~l~~g--~~~l~vi~tPGHT~g~~~~~~~~~~~~~~~~~~lftGD~l 171 (466)
T 3r2u_A 119 THFVQHNDDIYVG--NIKLKVLHTPGHTPESISFLLTDEGAGAQVPMGLFSGDFI 171 (466)
T ss_dssp CEEECTTCEEEET--TEEEEEEECCSSSTTCEEEEEECGGGTCCSCCEEEEETTB
T ss_pred CEEeCCCCEEEEC--CEEEEEEECCCCCCCCEEEEEcCCCccCCCceEEEECCcc
Confidence 3677778888887 34444 545555555432 234599999964
No 158
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=24.94 E-value=1.4e+02 Score=21.90 Aligned_cols=40 Identities=15% Similarity=0.054 Sum_probs=27.4
Q ss_pred CCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecc
Q psy13344 86 RPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDT 131 (155)
Q Consensus 86 ~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa 131 (155)
+.-++|.--.|... .--.+||...+ ++.+.+|.++||+|-
T Consensus 64 ri~IvV~S~ny~~S-----~WCl~EL~~i~-~~~~~~~~~ViPIfy 103 (176)
T 3jrn_A 64 RFAVVVVSENYAAS-----SWCLDELVTIM-DFEKKGSITVMPIFY 103 (176)
T ss_dssp EEEEEEECTTTTTC-----HHHHHHHHHHH-HHHHTTSCEEEEEEC
T ss_pred CEEEEEecCCcCCC-----hhHHHHHHHHH-hhhccCCCEEEEEEe
Confidence 44567777778752 23446777654 466889999999994
No 159
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=24.90 E-value=1e+02 Score=25.13 Aligned_cols=44 Identities=11% Similarity=0.064 Sum_probs=31.6
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhC--CCeEEEEec
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN--NGNVLVAVD 130 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~--gG~VLIP~f 130 (155)
...|++|++-.||.+.. ......++...+.++++. |+.+.|=+.
T Consensus 300 ~~~D~Iv~NPPyg~rl~--~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 345 (385)
T 3ldu_A 300 DEFGFIITNPPYGERLE--DKDSVKQLYKELGYAFRKLKNWSYYLITS 345 (385)
T ss_dssp CBSCEEEECCCCCCSHH--HHHHHHHHHHHHHHHHHTSBSCEEEEEES
T ss_pred CCCcEEEECCCCcCccC--CHHHHHHHHHHHHHHHhhCCCCEEEEEEC
Confidence 36899999999997653 234456777888888876 777766443
No 160
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=24.72 E-value=52 Score=23.80 Aligned_cols=49 Identities=8% Similarity=0.064 Sum_probs=32.2
Q ss_pred CCCcEEEEcC-CCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHH
Q psy13344 85 IRPTVVITDT-MSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVL 136 (155)
Q Consensus 85 ~~~D~LI~Es-Tyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~q 136 (155)
...|++++.. ... |-.......++++.+.+.|+.||.+++-+....+..
T Consensus 95 ~~fD~v~~~~~~~~---~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~ 144 (243)
T 3d2l_A 95 EPVDAITILCDSLN---YLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKME 144 (243)
T ss_dssp SCEEEEEECTTGGG---GCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHH
T ss_pred CCcCEEEEeCCchh---hcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHH
Confidence 4679998753 221 211234456788899999999999998666544433
No 161
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=24.62 E-value=70 Score=23.49 Aligned_cols=34 Identities=15% Similarity=0.261 Sum_probs=25.3
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEE
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLI 127 (155)
...|+++++.... ....+++.+.+.|+.||.+++
T Consensus 141 ~~fD~V~~~~~~~---------~~~~~l~~~~~~LkpgG~lv~ 174 (232)
T 3ntv_A 141 KVYDMIFIDAAKA---------QSKKFFEIYTPLLKHQGLVIT 174 (232)
T ss_dssp SCEEEEEEETTSS---------SHHHHHHHHGGGEEEEEEEEE
T ss_pred CCccEEEEcCcHH---------HHHHHHHHHHHhcCCCeEEEE
Confidence 3679999875321 134588888899999999988
No 162
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=24.54 E-value=62 Score=23.04 Aligned_cols=44 Identities=9% Similarity=0.128 Sum_probs=30.9
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecc
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDT 131 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa 131 (155)
...|++++..... |-+..+...+++..+.+.|+.||.+++-+..
T Consensus 113 ~~fD~v~~~~~l~---~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 113 ELFDLIVVAEVLY---YLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp CCEEEEEEESCGG---GSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CCccEEEEccHHH---hCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 4689999865443 2222344567889999999999999985543
No 163
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=24.42 E-value=81 Score=22.99 Aligned_cols=47 Identities=6% Similarity=0.039 Sum_probs=32.5
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHH
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRV 135 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~ 135 (155)
...|++++-..... -+ ......++..+.+.|+.||.++|-+......
T Consensus 100 ~~fD~i~~~~~l~~---~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 146 (240)
T 3dli_A 100 KYLDGVMISHFVEH---LD-PERLFELLSLCYSKMKYSSYIVIESPNPTSL 146 (240)
T ss_dssp TCBSEEEEESCGGG---SC-GGGHHHHHHHHHHHBCTTCCEEEEEECTTSH
T ss_pred CCeeEEEECCchhh---CC-cHHHHHHHHHHHHHcCCCcEEEEEeCCcchh
Confidence 46899998544332 22 2234678889999999999999976654443
No 164
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=24.19 E-value=53 Score=23.39 Aligned_cols=42 Identities=12% Similarity=0.085 Sum_probs=30.1
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEec
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVD 130 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~f 130 (155)
...|++++..... |-+ .+....++..+.+.|+.||.+++-..
T Consensus 101 ~~fD~v~~~~~l~---~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~ 142 (211)
T 3e23_A 101 DAYDAVWAHACLL---HVP-RDELADVLKLIWRALKPGGLFYASYK 142 (211)
T ss_dssp SCEEEEEECSCGG---GSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcEEEEEecCchh---hcC-HHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 4689999865432 222 33446788999999999999988644
No 165
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=23.96 E-value=2.3e+02 Score=21.13 Aligned_cols=44 Identities=11% Similarity=0.158 Sum_probs=29.3
Q ss_pred CCCcEEEE-cCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecccH
Q psy13344 85 IRPTVVIT-DTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAG 133 (155)
Q Consensus 85 ~~~D~LI~-EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~G 133 (155)
.+|++||. |-|-|.. ....+++.+.+.+..+.|.++++-+.-..
T Consensus 156 ~~p~lllLDEPts~LD-----~~~~~~l~~~l~~~~~~g~tvi~vtHd~~ 200 (240)
T 1ji0_A 156 SRPKLLMMDEPSLGLA-----PILVSEVFEVIQKINQEGTTILLVEQNAL 200 (240)
T ss_dssp TCCSEEEEECTTTTCC-----HHHHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred cCCCEEEEcCCcccCC-----HHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 57898888 5566652 23445677777766556778888776543
No 166
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=23.86 E-value=89 Score=24.93 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=26.8
Q ss_pred CcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEE
Q psy13344 87 PTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127 (155)
Q Consensus 87 ~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLI 127 (155)
.|++++.....+ .+ .+...++++.+.+.|+.||.++|
T Consensus 262 ~D~v~~~~vlh~--~~--~~~~~~~l~~~~~~L~pgG~l~i 298 (368)
T 3reo_A 262 GDAIFIKWICHD--WS--DEHCLKLLKNCYAALPDHGKVIV 298 (368)
T ss_dssp CSEEEEESCGGG--BC--HHHHHHHHHHHHHHSCTTCEEEE
T ss_pred CCEEEEechhhc--CC--HHHHHHHHHHHHHHcCCCCEEEE
Confidence 398888765432 11 23445788899999999999998
No 167
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=23.85 E-value=42 Score=24.39 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=26.3
Q ss_pred CCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEE
Q psy13344 86 RPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVA 128 (155)
Q Consensus 86 ~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP 128 (155)
..|+++++.. . ......++..+.+.|+.||.+++-
T Consensus 143 ~~D~v~~~~~-----~---~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 143 KVDVIFEDVA-----Q---PTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp CEEEEEECCC-----S---TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CceEEEECCC-----C---HhHHHHHHHHHHHhcCCCCEEEEE
Confidence 5799997654 2 234456688899999999999885
No 168
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=23.80 E-value=34 Score=26.12 Aligned_cols=45 Identities=11% Similarity=0.208 Sum_probs=29.7
Q ss_pred CCCcEEEEcCCCCCcCC--C---Chh---HHHHHHHHHHHHHHhCCCeEEEEe
Q psy13344 85 IRPTVVITDTMSAIYQQ--A---RRR---TRDERLMTNILQTLRNNGNVLVAV 129 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~--~---~~~---~~~~~l~~~I~~tl~~gG~VLIP~ 129 (155)
..+|+++++--|+.... . ... +.....++.+.+.|+.+|.++|=.
T Consensus 22 ~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~ 74 (260)
T 1g60_A 22 KSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (260)
T ss_dssp TCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 36899999999975411 0 111 233455666678889999987754
No 169
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=23.75 E-value=44 Score=22.88 Aligned_cols=40 Identities=8% Similarity=0.174 Sum_probs=29.2
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEec
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVD 130 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~f 130 (155)
...|++++......-. ...++++.+.+.|+.||.++|-.+
T Consensus 74 ~~~D~v~~~~~l~~~~------~~~~~l~~~~~~L~pgG~l~~~~~ 113 (170)
T 3i9f_A 74 NSVDFILFANSFHDMD------DKQHVISEVKRILKDDGRVIIIDW 113 (170)
T ss_dssp TCEEEEEEESCSTTCS------CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CceEEEEEccchhccc------CHHHHHHHHHHhcCCCCEEEEEEc
Confidence 4689999876554321 125788889999999999998654
No 170
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A*
Probab=23.70 E-value=47 Score=25.45 Aligned_cols=41 Identities=5% Similarity=-0.163 Sum_probs=24.3
Q ss_pred ceecCCceeccCC-CCceeE----EecCceEEEEEeCceEEEEEeCCC
Q psy13344 27 TKIKYDEYGNHSS-WAYGEE----IFTGPIWKIVKEGEEEIVYGVDFN 69 (155)
Q Consensus 27 ~~v~Y~q~~~l~~-~~~~vt----~lGGa~~~i~~~~~~~IvytGD~~ 69 (155)
+.+.-++.+++.+ ..+++. |-.|++.+.. ...+++|+||.-
T Consensus 137 ~~~~~g~~~~lg~g~~l~~i~~pGHt~g~~~~~~--~~~~~lf~GD~~ 182 (303)
T 2vw8_A 137 RAVADGEWLELGPRHRLQVIEAHGHSDDHVVFYD--VRRRRLFCGDAL 182 (303)
T ss_dssp EEECTTCEEEEETTEEEEEEECTTSSTTCEEEEE--TTTTEEEEETTT
T ss_pred eEcCCCCEEecCCCeEEEEEECCCCCcccEEEEE--CCCCEEEEcCcc
Confidence 4455566677752 123333 5556666555 246899999963
No 171
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=23.52 E-value=30 Score=25.52 Aligned_cols=48 Identities=17% Similarity=0.136 Sum_probs=35.7
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHH
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~ 143 (155)
...|+++++. +.. .++++.+.+.|+.||.+++-.......++++..|.
T Consensus 165 ~~~D~v~~~~--------~~~---~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~ 212 (258)
T 2pwy_A 165 AAYDGVALDL--------MEP---WKVLEKAALALKPDRFLVAYLPNITQVLELVRAAE 212 (258)
T ss_dssp TCEEEEEEES--------SCG---GGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHT
T ss_pred CCcCEEEECC--------cCH---HHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 3589999832 111 25677888999999999998888777777777764
No 172
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=23.51 E-value=55 Score=23.38 Aligned_cols=43 Identities=9% Similarity=0.050 Sum_probs=29.3
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecc
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDT 131 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa 131 (155)
...|++++...... +. .....+++..+.+.|+.||.+++=...
T Consensus 102 ~~~D~v~~~~~~~~--~~--~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 102 KTFDYVIFIDSIVH--FE--PLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp TCEEEEEEESCGGG--CC--HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CcEEEEEEcCchHh--CC--HHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 36899998765211 11 123467889999999999999875443
No 173
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=23.37 E-value=69 Score=22.54 Aligned_cols=43 Identities=7% Similarity=-0.014 Sum_probs=30.4
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecc
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDT 131 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa 131 (155)
...|++++......- + .+...++++.+.+.|+.||.++|-.+.
T Consensus 101 ~~fD~v~~~~~l~~~---~-~~~~~~~l~~~~~~L~pgG~l~i~~~~ 143 (203)
T 3h2b_A 101 KRWAGLLAWYSLIHM---G-PGELPDALVALRMAVEDGGGLLMSFFS 143 (203)
T ss_dssp CCEEEEEEESSSTTC---C-TTTHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CCeEEEEehhhHhcC---C-HHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 467999986544332 1 123357888899999999999986643
No 174
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=23.20 E-value=97 Score=24.70 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=27.1
Q ss_pred CcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEE
Q psy13344 87 PTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVA 128 (155)
Q Consensus 87 ~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP 128 (155)
.|++++.....+ .+ .+...+++..+.+.|+.||.++|-
T Consensus 260 ~D~v~~~~vlh~--~~--d~~~~~~L~~~~~~L~pgG~l~i~ 297 (364)
T 3p9c_A 260 GDTILMKWILHD--WS--DQHCATLLKNCYDALPAHGKVVLV 297 (364)
T ss_dssp CSEEEEESCGGG--SC--HHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred CCEEEehHHhcc--CC--HHHHHHHHHHHHHHcCCCCEEEEE
Confidence 398887665432 11 234467888999999999999983
No 175
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens}
Probab=23.13 E-value=1.7e+02 Score=19.38 Aligned_cols=37 Identities=14% Similarity=0.063 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHhCCCeEEEEecc-cHHHHHHHHH
Q psy13344 105 RTRDERLMTNILQTLRNNGNVLVAVDT-AGRVLELTHM 141 (155)
Q Consensus 105 ~~~~~~l~~~I~~tl~~gG~VLIP~fa-~GR~qEll~~ 141 (155)
.+...++++.|.+.+++||.|||=|.+ .||+==+...
T Consensus 72 ~~~~~~~~~~i~~~~~~~~~vlVHC~aG~~Rsg~~~~~ 109 (151)
T 2img_A 72 PDQIDRFVQIVDEANARGEAVGVHCALGFGRTGTMLAC 109 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECSSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEECCCCCChHHHHHHH
Confidence 455678899999999999999999987 3676655433
No 176
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=22.89 E-value=1e+02 Score=23.78 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=28.0
Q ss_pred CCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEE
Q psy13344 86 RPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVA 128 (155)
Q Consensus 86 ~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP 128 (155)
..|++++.....+ .+ .....++++.+.+.|+.||.++|-
T Consensus 233 ~~D~v~~~~vl~~--~~--~~~~~~~l~~~~~~L~pgG~l~i~ 271 (334)
T 2ip2_A 233 NGDIYLLSRIIGD--LD--EAASLRLLGNCREAMAGDGRVVVI 271 (334)
T ss_dssp SCSEEEEESCGGG--CC--HHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred CCCEEEEchhccC--CC--HHHHHHHHHHHHHhcCCCCEEEEE
Confidence 5899997654432 11 233457889999999999999884
No 177
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=22.83 E-value=48 Score=24.48 Aligned_cols=49 Identities=20% Similarity=0.313 Sum_probs=36.8
Q ss_pred CCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHHH
Q psy13344 86 RPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQL 145 (155)
Q Consensus 86 ~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~~ 145 (155)
..|+++++.. .. .++++.+.+.|+.||.+++-+......+++...|.+.
T Consensus 162 ~~D~v~~~~~--------~~---~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~ 210 (255)
T 3mb5_A 162 NVDHVILDLP--------QP---ERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREF 210 (255)
T ss_dssp SEEEEEECSS--------CG---GGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHT
T ss_pred CcCEEEECCC--------CH---HHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 5799888321 11 3567788899999999999887778888888777654
No 178
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=22.78 E-value=44 Score=24.53 Aligned_cols=40 Identities=8% Similarity=-0.038 Sum_probs=22.0
Q ss_pred ecCCceeccCCCCceeE-----EecCceEEEEEeCceEEEEEeCCCC
Q psy13344 29 IKYDEYGNHSSWAYGEE-----IFTGPIWKIVKEGEEEIVYGVDFNL 70 (155)
Q Consensus 29 v~Y~q~~~l~~~~~~vt-----~lGGa~~~i~~~~~~~IvytGD~~~ 70 (155)
++-++.+++.+..+++. |--|++.+.. ...+++|+||.-.
T Consensus 143 ~~~g~~l~~g~~~i~~~~~~pGHt~g~~~~~~--~~~~~lf~GD~~~ 187 (246)
T 2fhx_A 143 LKQGKVFSFSNELVEVSFPGPAHSPDNVVVYF--PKKKLLFGGCMIK 187 (246)
T ss_dssp TTTCEEEEETTEEEEEECCCCSSSTTCCEEEE--TTTTEEEEETTCC
T ss_pred cCCCCEEEECCEEEEEEeCCCCCCCCCEEEEE--cCCCEEEECCEec
Confidence 44455566653222221 4445555544 2468999999654
No 179
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=22.38 E-value=31 Score=24.11 Aligned_cols=40 Identities=10% Similarity=0.182 Sum_probs=28.2
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEE
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVA 128 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP 128 (155)
...|++++....... + .+...++++.+.+.|+.||.++|=
T Consensus 96 ~~~D~v~~~~~l~~~---~-~~~~~~~l~~~~~~L~~gG~l~~~ 135 (199)
T 2xvm_A 96 RQYDFILSTVVLMFL---E-AKTIPGLIANMQRCTKPGGYNLIV 135 (199)
T ss_dssp CCEEEEEEESCGGGS---C-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCceEEEEcchhhhC---C-HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 367999987654421 1 223467889999999999997763
No 180
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=22.25 E-value=95 Score=24.86 Aligned_cols=34 Identities=15% Similarity=0.068 Sum_probs=26.9
Q ss_pred CCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEE
Q psy13344 86 RPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVL 126 (155)
Q Consensus 86 ~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VL 126 (155)
..|++|++..|+.. ...+|++.+.+.|+.||.++
T Consensus 241 ~fD~Vi~~~p~~~~-------~~~~~l~~~~~~LkpgG~~~ 274 (373)
T 2qm3_A 241 KFDTFITDPPETLE-------AIRAFVGRGIATLKGPRCAG 274 (373)
T ss_dssp CBSEEEECCCSSHH-------HHHHHHHHHHHTBCSTTCEE
T ss_pred CccEEEECCCCchH-------HHHHHHHHHHHHcccCCeEE
Confidence 58999998877642 14788899999999999653
No 181
>2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase family 29; 1.73A {Bacteroides thetaiotaomicron} PDB: 2xii_A* 2xib_A* 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A*
Probab=22.07 E-value=90 Score=26.29 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhCCCeEEE
Q psy13344 106 TRDERLMTNILQTLRNNGNVLV 127 (155)
Q Consensus 106 ~~~~~l~~~I~~tl~~gG~VLI 127 (155)
...++|++.+.+++.+||+.|+
T Consensus 294 ks~~~Li~~lv~~VskgGnlLL 315 (450)
T 2wvv_A 294 KTPIEVIDRIVHAVSMGGNMVV 315 (450)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHHhcCCceEEE
Confidence 4567899999999999999997
No 182
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=21.88 E-value=50 Score=24.76 Aligned_cols=36 Identities=19% Similarity=0.144 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHHH
Q psy13344 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQ 144 (155)
Q Consensus 109 ~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~~ 144 (155)
..+++.+.++|+.||.+++-+....-..+++..+..
T Consensus 148 ~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~ 183 (235)
T 3ckk_A 148 PTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEE 183 (235)
T ss_dssp HHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 579999999999999999988776555555555544
No 183
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=21.83 E-value=42 Score=24.23 Aligned_cols=41 Identities=12% Similarity=0.116 Sum_probs=27.8
Q ss_pred CCCcEEEE-cCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEE
Q psy13344 85 IRPTVVIT-DTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVA 128 (155)
Q Consensus 85 ~~~D~LI~-EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP 128 (155)
...|++++ .... .|-+..+...++++.+.+.|+.||.+++-
T Consensus 99 ~~~D~v~~~~~~~---~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (239)
T 3bxo_A 99 RKFSAVVSMFSSV---GYLKTTEELGAAVASFAEHLEPGGVVVVE 140 (239)
T ss_dssp SCEEEEEECTTGG---GGCCSHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CCCcEEEEcCchH---hhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 35799985 2222 22222345578889999999999999984
No 184
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=21.73 E-value=45 Score=24.45 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=26.1
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEE
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVA 128 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP 128 (155)
...|+++.+. +.......++..+.+.|+.||.++|-
T Consensus 142 ~~~D~v~~~~--------~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 142 EKVDVIYEDV--------AQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp CCEEEEEECC--------CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEEEEec--------CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 3579888321 22344567888999999999999994
No 185
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=21.69 E-value=49 Score=23.44 Aligned_cols=42 Identities=14% Similarity=0.018 Sum_probs=29.7
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEec
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVD 130 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~f 130 (155)
...|++++..... |-+ ......+++.+.+.|+.||.+++-.+
T Consensus 106 ~~~D~v~~~~~l~---~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 106 RQWDAVFFAHWLA---HVP-DDRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp SCEEEEEEESCGG---GSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CceeEEEEechhh---cCC-HHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 4689999865332 222 23346888999999999999988654
No 186
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=21.50 E-value=2.4e+02 Score=21.38 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=27.6
Q ss_pred CCCcEEEE-cCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEeccc
Q psy13344 85 IRPTVVIT-DTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTA 132 (155)
Q Consensus 85 ~~~D~LI~-EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~ 132 (155)
.+|++||+ |-|-|.. ....+++.+.+.+..+.|.+|++-+.-.
T Consensus 163 ~~p~lllLDEPts~LD-----~~~~~~l~~~l~~l~~~g~tiiivtHd~ 206 (256)
T 1vpl_A 163 VNPRLAILDEPTSGLD-----VLNAREVRKILKQASQEGLTILVSSHNM 206 (256)
T ss_dssp TCCSEEEEESTTTTCC-----HHHHHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred cCCCEEEEeCCccccC-----HHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 57898888 4455542 2344566777776655677888776543
No 187
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=21.42 E-value=1.3e+02 Score=22.94 Aligned_cols=44 Identities=11% Similarity=0.135 Sum_probs=31.8
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEeccc
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTA 132 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~ 132 (155)
..+|++++......-.. . ....++..+.+.|+.||.++|-.+..
T Consensus 156 ~~~d~v~~~~vlh~~~d---~-~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 156 SRPAAIMLVGMLHYLSP---D-VVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp TSCCEEEETTTGGGSCT---T-THHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred CCCEEEEEechhhhCCc---H-HHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 36899998876543221 1 34578889999999999999876654
No 188
>2o5h_A Hypothetical protein; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 1.90A {Neisseria meningitidis} SCOP: d.363.1.1
Probab=21.25 E-value=1.1e+02 Score=21.82 Aligned_cols=48 Identities=13% Similarity=0.148 Sum_probs=39.2
Q ss_pred CChhHHHHHHHHHHHHHHhCCCeEEEE--ecccHHHHHHHHHHHHHHHhh
Q psy13344 102 ARRRTRDERLMTNILQTLRNNGNVLVA--VDTAGRVLELTHMLEQLWRNK 149 (155)
Q Consensus 102 ~~~~~~~~~l~~~I~~tl~~gG~VLIP--~fa~GR~qEll~~L~~~~~~~ 149 (155)
.+-+++.+.|...|.+.|+.|-.-|.+ .|--|.+.|++.++++.|...
T Consensus 46 ~sFeErK~~FF~ll~kLL~eG~iKLa~~G~fl~Gs~~EqVe~fR~~fP~s 95 (136)
T 2o5h_A 46 SDFEEKTEAFFILFKELLRRGHLKLQRDGQIIGHTPEEWEQIFREVWPEY 95 (136)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTSEEEEETTEECCCCHHHHHHHHHHHCCSS
T ss_pred cCHHHHHHHHHHHHHHHHhCCcEEecCCCeeccCCHHHHHHHHHHHCCCc
Confidence 345678889999999999998776664 455789999999999999754
No 189
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=21.22 E-value=77 Score=24.91 Aligned_cols=38 Identities=21% Similarity=0.271 Sum_probs=28.0
Q ss_pred CCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEE
Q psy13344 86 RPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127 (155)
Q Consensus 86 ~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLI 127 (155)
..|++++.....+ . + .....+++..+.+.|+.||.++|
T Consensus 247 ~~D~v~~~~vlh~--~-~-d~~~~~~L~~~~~~LkpgG~l~i 284 (348)
T 3lst_A 247 HADVHVLKRILHN--W-G-DEDSVRILTNCRRVMPAHGRVLV 284 (348)
T ss_dssp CCSEEEEESCGGG--S-C-HHHHHHHHHHHHHTCCTTCEEEE
T ss_pred CCcEEEEehhccC--C-C-HHHHHHHHHHHHHhcCCCCEEEE
Confidence 6898888765432 1 1 23335788899999999999998
No 190
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=21.00 E-value=1.9e+02 Score=20.12 Aligned_cols=43 Identities=14% Similarity=0.204 Sum_probs=28.5
Q ss_pred CCCcEEEE-cCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEeccc
Q psy13344 85 IRPTVVIT-DTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTA 132 (155)
Q Consensus 85 ~~~D~LI~-EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~ 132 (155)
.+|++||+ |.|-|.. ....+.+.+.+.+..+.|.++++-+.-.
T Consensus 80 ~~p~lllLDEPt~~LD-----~~~~~~l~~~l~~~~~~~~tiiivsH~~ 123 (148)
T 1f2t_B 80 GEISLLILDEPTPYLD-----EERRRKLITIMERYLKKIPQVILVSHDE 123 (148)
T ss_dssp SSCSEEEEESCSCTTC-----HHHHHHHHHHHHHTGGGSSEEEEEESCG
T ss_pred CCCCEEEEECCCccCC-----HHHHHHHHHHHHHHHccCCEEEEEEChH
Confidence 36888988 5555541 2344677777777666677888877653
No 191
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=20.91 E-value=76 Score=23.84 Aligned_cols=51 Identities=14% Similarity=0.098 Sum_probs=33.7
Q ss_pred CCCcEEEEc-CCCCCcCCC-ChhHHHHHHHHHHHHHHhCCCeEEEEecccHHH
Q psy13344 85 IRPTVVITD-TMSAIYQQA-RRRTRDERLMTNILQTLRNNGNVLVAVDTAGRV 135 (155)
Q Consensus 85 ~~~D~LI~E-sTyg~~~~~-~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~ 135 (155)
...|++++- .....-... ...+....+++.+.+.|+.||.++|-+......
T Consensus 129 ~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 181 (293)
T 3thr_A 129 DGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYI 181 (293)
T ss_dssp TCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECHHHH
T ss_pred CCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCHHHH
Confidence 468999985 444332210 012445678999999999999999877654433
No 192
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=20.75 E-value=34 Score=26.00 Aligned_cols=47 Identities=11% Similarity=0.015 Sum_probs=34.0
Q ss_pred CCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecccHHHHHHHHHHH
Q psy13344 86 RPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143 (155)
Q Consensus 86 ~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR~qEll~~L~ 143 (155)
..|+++++ .+.. .++++.+.+.|+.||.+++-+.......++...|.
T Consensus 179 ~fD~Vi~~--------~~~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~ 225 (275)
T 1yb2_A 179 MYDAVIAD--------IPDP---WNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLS 225 (275)
T ss_dssp CEEEEEEC--------CSCG---GGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSG
T ss_pred CccEEEEc--------CcCH---HHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 57999882 1111 36778888999999999998877766666665554
No 193
>1hru_A YRDC gene product; protein folding, structural genomics, RNA, SUA5, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Escherichia coli} SCOP: d.115.1.1
Probab=20.70 E-value=98 Score=22.63 Aligned_cols=23 Identities=4% Similarity=0.174 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEecc
Q psy13344 109 ERLMTNILQTLRNNGNVLVAVDT 131 (155)
Q Consensus 109 ~~l~~~I~~tl~~gG~VLIP~fa 131 (155)
.+.++.+.+.|++||.|.+|...
T Consensus 7 ~~~i~~a~~~L~~G~iva~ptdt 29 (188)
T 1hru_A 7 RDAIAAAIDVLNEERVIAYPTEA 29 (188)
T ss_dssp HHHHHHHHHHHHTTCCEEEECSS
T ss_pred HHHHHHHHHHHHCCCEEEEeCCC
Confidence 45567788899999999999754
No 194
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=20.60 E-value=65 Score=22.85 Aligned_cols=41 Identities=27% Similarity=0.267 Sum_probs=29.7
Q ss_pred CCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEeccc
Q psy13344 86 RPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTA 132 (155)
Q Consensus 86 ~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~ 132 (155)
..|++++......-. ...++++.+.+.|+.||.++|-.+.-
T Consensus 95 ~fD~v~~~~~l~~~~------~~~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 95 SFDVVLLFTTLEFVE------DVERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp CEEEEEEESCTTTCS------CHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred cEEEEEEcChhhhcC------CHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 579999876543321 12478888999999999999876543
No 195
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=20.52 E-value=70 Score=24.32 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=27.5
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecc
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDT 131 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa 131 (155)
...|+++.+.+. + ...+.|...+...|+.||.+++.+.+
T Consensus 145 ~~~D~I~~d~a~-----~---~~~~il~~~~~~~LkpGG~lvisik~ 183 (232)
T 3id6_C 145 ENVDVLYVDIAQ-----P---DQTDIAIYNAKFFLKVNGDMLLVIKA 183 (232)
T ss_dssp CCEEEEEECCCC-----T---THHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred cceEEEEecCCC-----h---hHHHHHHHHHHHhCCCCeEEEEEEcc
Confidence 468999988543 2 34445666777799999999987654
No 196
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=20.41 E-value=99 Score=22.13 Aligned_cols=34 Identities=9% Similarity=0.078 Sum_probs=24.9
Q ss_pred CCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEE
Q psy13344 86 RPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVA 128 (155)
Q Consensus 86 ~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP 128 (155)
..|+++++.. ......+++.+.+.|+.||.+++-
T Consensus 133 ~fD~v~~d~~---------~~~~~~~l~~~~~~L~pgG~lv~~ 166 (223)
T 3duw_A 133 PFDFIFIDAD---------KQNNPAYFEWALKLSRPGTVIIGD 166 (223)
T ss_dssp CCSEEEECSC---------GGGHHHHHHHHHHTCCTTCEEEEE
T ss_pred CcCEEEEcCC---------cHHHHHHHHHHHHhcCCCcEEEEe
Confidence 5799988754 122346788888999999987773
No 197
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=20.31 E-value=2.8e+02 Score=21.10 Aligned_cols=43 Identities=16% Similarity=0.168 Sum_probs=28.3
Q ss_pred CCcEEEEc-CCCCCcCCCChhHHHHHHHHHHHHHHhCCC-eEEEEecccH
Q psy13344 86 RPTVVITD-TMSAIYQQARRRTRDERLMTNILQTLRNNG-NVLVAVDTAG 133 (155)
Q Consensus 86 ~~D~LI~E-sTyg~~~~~~~~~~~~~l~~~I~~tl~~gG-~VLIP~fa~G 133 (155)
+|++||++ -|-|.. .....++.+.+.+..+.+| +|++-+.-..
T Consensus 165 ~p~lLllDEPts~LD-----~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~ 209 (266)
T 4g1u_C 165 TPRWLFLDEPTSALD-----LYHQQHTLRLLRQLTRQEPLAVCCVLHDLN 209 (266)
T ss_dssp CCEEEEECCCCSSCC-----HHHHHHHHHHHHHHHHHSSEEEEEECSCHH
T ss_pred CCCEEEEeCccccCC-----HHHHHHHHHHHHHHHHcCCCEEEEEEcCHH
Confidence 78999984 455541 2344677777777766766 7777666544
No 198
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=20.31 E-value=2.3e+02 Score=21.50 Aligned_cols=42 Identities=12% Similarity=0.204 Sum_probs=27.8
Q ss_pred CCCcEEEE-cCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecc
Q psy13344 85 IRPTVVIT-DTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDT 131 (155)
Q Consensus 85 ~~~D~LI~-EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa 131 (155)
.+|++||+ |-|-|.. ....+.+.+.+.+..+.|.+|++-+.-
T Consensus 155 ~~p~lllLDEPts~LD-----~~~~~~l~~~l~~l~~~g~tii~vtHd 197 (266)
T 2yz2_A 155 HEPDILILDEPLVGLD-----REGKTDLLRIVEKWKTLGKTVILISHD 197 (266)
T ss_dssp TCCSEEEEESTTTTCC-----HHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred cCCCEEEEcCccccCC-----HHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 57888888 5565552 234466777777766667788776654
No 199
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich, hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB: 1fq1_A*
Probab=20.28 E-value=1.2e+02 Score=22.09 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEecc-cHHHHHHHH
Q psy13344 106 TRDERLMTNILQTLRNNGNVLVAVDT-AGRVLELTH 140 (155)
Q Consensus 106 ~~~~~l~~~I~~tl~~gG~VLIP~fa-~GR~qEll~ 140 (155)
+...++++.|.+.++.+|.|||-|.+ +||+==++.
T Consensus 117 ~~~~~~~~~i~~~~~~~~~VlVHC~aG~gRTg~~~a 152 (212)
T 1fpz_A 117 ASCCEIMEELTTCLKNYRKTLIHSYGGLGRSCLVAA 152 (212)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCCHHHHHHH
Confidence 45578889999999999999999987 367655543
No 200
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=20.24 E-value=1.3e+02 Score=21.53 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=25.3
Q ss_pred CCCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEE
Q psy13344 85 IRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLV 127 (155)
Q Consensus 85 ~~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLI 127 (155)
...|+++++.. ......+++.+.+.|+.||.+++
T Consensus 144 ~~~D~v~~d~~---------~~~~~~~l~~~~~~L~pgG~lv~ 177 (229)
T 2avd_A 144 GTFDVAVVDAD---------KENCSAYYERCLQLLRPGGILAV 177 (229)
T ss_dssp TCEEEEEECSC---------STTHHHHHHHHHHHEEEEEEEEE
T ss_pred CCccEEEECCC---------HHHHHHHHHHHHHHcCCCeEEEE
Confidence 35799998654 12234678888899999999988
No 201
>1k7j_A Protein YCIO, protein TF1; structural genomics, X-RAY crystallography, putative translation factor, PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.115.1.1 PDB: 1kk9_A
Probab=20.19 E-value=92 Score=23.21 Aligned_cols=22 Identities=23% Similarity=0.560 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhCCCeEEEEecc
Q psy13344 110 RLMTNILQTLRNNGNVLVAVDT 131 (155)
Q Consensus 110 ~l~~~I~~tl~~gG~VLIP~fa 131 (155)
+.++.+.+.|++||.|.+|...
T Consensus 15 ~~i~~a~~~L~~G~iva~pTdt 36 (206)
T 1k7j_A 15 RLINQAVEIVRKGGVIVYPTDS 36 (206)
T ss_dssp HHHHHHHHHHHTTCCEEEEETT
T ss_pred HHHHHHHHHHHCCCEEEEECCC
Confidence 3466778899999999999864
No 202
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=20.17 E-value=52 Score=24.12 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=28.1
Q ss_pred CCcEEEEcCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEE
Q psy13344 86 RPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVA 128 (155)
Q Consensus 86 ~~D~LI~EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP 128 (155)
..|++++..... |-+ .....+++..+.+.|+.||.++|-
T Consensus 146 ~fD~v~~~~~l~---~~~-~~~~~~~l~~~~~~LkpgG~l~i~ 184 (241)
T 2ex4_A 146 SYDVIWIQWVIG---HLT-DQHLAEFLRRCKGSLRPNGIIVIK 184 (241)
T ss_dssp CEEEEEEESCGG---GSC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CEEEEEEcchhh---hCC-HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 579999875432 222 223467899999999999999983
No 203
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=20.09 E-value=2.9e+02 Score=21.01 Aligned_cols=45 Identities=13% Similarity=0.222 Sum_probs=29.7
Q ss_pred CCCcEEEE-cCCCCCcCCCChhHHHHHHHHHHHHHHhCCCeEEEEecccHH
Q psy13344 85 IRPTVVIT-DTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGR 134 (155)
Q Consensus 85 ~~~D~LI~-EsTyg~~~~~~~~~~~~~l~~~I~~tl~~gG~VLIP~fa~GR 134 (155)
.+|++||. |-|-|.. ....+++.+.+.+..+.|.+|++-+.-..-
T Consensus 176 ~~p~lllLDEPts~LD-----~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~ 221 (263)
T 2olj_A 176 MEPKIMLFDEPTSALD-----PEMVGEVLSVMKQLANEGMTMVVVTHEMGF 221 (263)
T ss_dssp TCCSEEEEESTTTTSC-----HHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred CCCCEEEEeCCcccCC-----HHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Confidence 57898888 5565542 234466777777766667788887765443
No 204
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2
Probab=20.01 E-value=56 Score=24.88 Aligned_cols=40 Identities=5% Similarity=-0.116 Sum_probs=22.4
Q ss_pred ceecCCceeccCCCCceeE----EecCceEEEEEeCceEEEEEeCCCC
Q psy13344 27 TKIKYDEYGNHSSWAYGEE----IFTGPIWKIVKEGEEEIVYGVDFNL 70 (155)
Q Consensus 27 ~~v~Y~q~~~l~~~~~~vt----~lGGa~~~i~~~~~~~IvytGD~~~ 70 (155)
..+.-++.+++.+..+++. |--|++.+. ..+++||||.-.
T Consensus 94 ~~~~~g~~~~~g~~~~~vi~tPGHt~g~~~~~----~~~~lftGD~l~ 137 (258)
T 2qed_A 94 HLVGDGDTIRVLGEKFTLFATPGHTLGHVCYF----SRPYLFCGDTLF 137 (258)
T ss_dssp EECCTTCEEEETTEEEEEEECCSSSTTCEEEE----ETTEEEEETTEE
T ss_pred EEeCCCCEEEECCcEEEEEECCCCCCCCeEEE----cCCEEEECCCCC
Confidence 4455566666653223332 444555444 246999999743
Done!