Your job contains 1 sequence.
>psy13344
MTGLCDANSRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEE
EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR
NNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLVS
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy13344
(155 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0027873 - symbol:Cpsf100 "Cleavage and polyadenyla... 429 1.3e-39 1
UNIPROTKB|F1SD85 - symbol:CPSF2 "Uncharacterized protein"... 373 2.2e-34 1
ZFIN|ZDB-GENE-040718-79 - symbol:cpsf2 "cleavage and poly... 380 3.3e-34 1
UNIPROTKB|F1NMN0 - symbol:CPSF2 "Uncharacterized protein"... 378 5.2e-34 1
UNIPROTKB|Q10568 - symbol:CPSF2 "Cleavage and polyadenyla... 378 5.2e-34 1
UNIPROTKB|E2R496 - symbol:CPSF2 "Uncharacterized protein"... 378 5.2e-34 1
UNIPROTKB|Q9P2I0 - symbol:CPSF2 "Cleavage and polyadenyla... 378 5.2e-34 1
MGI|MGI:1861601 - symbol:Cpsf2 "cleavage and polyadenylat... 378 5.2e-34 1
RGD|1309687 - symbol:Cpsf2 "cleavage and polyadenylation ... 378 5.2e-34 1
UNIPROTKB|Q9W799 - symbol:cpsf2 "Cleavage and polyadenyla... 377 6.7e-34 1
WB|WBGene00017313 - symbol:cpsf-2 species:6239 "Caenorhab... 314 4.9e-27 1
UNIPROTKB|O17403 - symbol:cpsf-2 "Probable cleavage and p... 314 4.9e-27 1
TAIR|locus:2172843 - symbol:CPSF100 "cleavage and polyade... 267 4.2e-22 1
DICTYBASE|DDB_G0270392 - symbol:cpsf2 "cleavage and polya... 197 1.5e-14 1
POMBASE|SPBC1709.15c - symbol:cft2 "cleavage factor two C... 186 2.3e-13 1
DICTYBASE|DDB_G0278189 - symbol:ints11 "integrator comple... 164 4.8e-11 1
UNIPROTKB|E1B7Q9 - symbol:CPSF3L "Integrator complex subu... 160 9.4e-11 1
UNIPROTKB|Q2YDM2 - symbol:CPSF3L "Integrator complex subu... 160 9.4e-11 1
UNIPROTKB|F1RJE8 - symbol:CPSF3L "Uncharacterized protein... 158 1.5e-10 1
UNIPROTKB|Q5TA45 - symbol:CPSF3L "Integrator complex subu... 154 4.1e-10 1
MGI|MGI:1919207 - symbol:Cpsf3l "cleavage and polyadenyla... 154 4.1e-10 1
RGD|1306841 - symbol:Cpsf3l "cleavage and polyadenylation... 154 4.1e-10 1
UNIPROTKB|G3V1S5 - symbol:CPSF3L "Integrator complex subu... 154 4.2e-10 1
UNIPROTKB|F1NV30 - symbol:CPSF3L "Integrator complex subu... 152 6.8e-10 1
UNIPROTKB|Q5ZIH0 - symbol:CPSF3L "Integrator complex subu... 152 6.8e-10 1
UNIPROTKB|E2QY53 - symbol:CPSF3L "Uncharacterized protein... 149 1.4e-09 1
UNIPROTKB|G4N6C6 - symbol:MGG_06570 "Uncharacterized prot... 149 2.7e-09 1
ASPGD|ASPL0000040420 - symbol:AN3082 species:162425 "Emer... 146 6.0e-09 1
FB|FBgn0039691 - symbol:IntS11 "Integrator 11" species:72... 134 5.8e-08 1
WB|WBGene00008642 - symbol:F10B5.8 species:6239 "Caenorha... 128 2.6e-07 1
ZFIN|ZDB-GENE-030131-3275 - symbol:cpsf3 "cleavage and po... 127 4.0e-07 1
TAIR|locus:2206076 - symbol:CPSF73-I "cleavage and polyad... 126 5.1e-07 1
UNIPROTKB|G5E9W3 - symbol:CPSF3 "Cleavage and polyadenyla... 121 1.6e-06 1
UNIPROTKB|P79101 - symbol:CPSF3 "Cleavage and polyadenyla... 121 1.7e-06 1
UNIPROTKB|Q9UKF6 - symbol:CPSF3 "Cleavage and polyadenyla... 121 1.7e-06 1
MGI|MGI:1859328 - symbol:Cpsf3 "cleavage and polyadenylat... 121 1.7e-06 1
UNIPROTKB|F1NKW5 - symbol:CPSF3 "Uncharacterized protein"... 121 1.7e-06 1
RGD|1305767 - symbol:Cpsf3 "cleavage and polyadenylation ... 121 1.7e-06 1
UNIPROTKB|G3V6W7 - symbol:Cpsf3 "Protein Cpsf3" species:1... 121 1.7e-06 1
UNIPROTKB|I3LKR1 - symbol:CPSF3 "Uncharacterized protein"... 121 1.7e-06 1
UNIPROTKB|E2R7R2 - symbol:CPSF3 "Uncharacterized protein"... 121 1.8e-06 1
POMBASE|SPAC17G6.16c - symbol:ysh1 "mRNA cleavage and pol... 118 4.1e-06 1
ASPGD|ASPL0000060573 - symbol:AN0990 species:162425 "Emer... 114 1.3e-05 1
UNIPROTKB|E9PNS4 - symbol:CPSF3L "Integrator complex subu... 109 5.7e-05 1
FB|FBgn0261065 - symbol:Cpsf73 "Cleavage and polyadenylat... 111 8.2e-05 1
DICTYBASE|DDB_G0274799 - symbol:cpsf3 "cleavage and polya... 108 0.00040 1
TAIR|locus:2065368 - symbol:CPSF73-II "AT2G01730" species... 107 0.00043 1
>FB|FBgn0027873 [details] [associations]
symbol:Cpsf100 "Cleavage and polyadenylation specificity
factor 100" species:7227 "Drosophila melanogaster" [GO:0006379
"mRNA cleavage" evidence=ISS;NAS] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS;IMP;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=NAS] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006398 "histone mRNA 3'-end
processing" evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 EMBL:AE014297 GO:GO:0022008 GO:GO:0006378
GO:GO:0003723 GO:GO:0016787 GO:GO:0005847 GO:GO:0006379
eggNOG:COG1236 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 GeneTree:ENSGT00700000104551 OMA:NNPFQFK
GO:GO:0006398 EMBL:AF160933 RefSeq:NP_651658.1 RefSeq:NP_733264.1
UniGene:Dm.1362 ProteinModelPortal:Q9V3D6 SMR:Q9V3D6 IntAct:Q9V3D6
STRING:Q9V3D6 PaxDb:Q9V3D6 PRIDE:Q9V3D6 EnsemblMetazoa:FBtr0085357
GeneID:43426 KEGG:dme:Dmel_CG1957 UCSC:CG1957-RA CTD:43426
FlyBase:FBgn0027873 InParanoid:Q8IML7 OrthoDB:EOG4XD261
PhylomeDB:Q9V3D6 GenomeRNAi:43426 NextBio:833860 Bgee:Q9V3D6
GermOnline:CG1957 Uniprot:Q9V3D6
Length = 756
Score = 429 (156.1 bits), Expect = 1.3e-39, P = 1.3e-39
Identities = 86/137 (62%), Positives = 105/137 (76%)
Query: 27 TKIKYDEYGNHSSWAYGEEI--------FTGPIWKIVKEGEEEIVYGVDFNLKKERHLNG 78
T++KY++ + YG I G IWKIVK GEE+IVY DFN KKERHL+G
Sbjct: 127 TQLKYNQTVSLKDKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSG 186
Query: 79 CVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLEL 138
C LDR RP+++ITD +A YQQARRR RDE+LMTNILQT+RNNGNVL+AVDTAGRVLEL
Sbjct: 187 CELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLEL 246
Query: 139 THMLEQLWRNKDSGLVS 155
HML+QLW+NK+SGL++
Sbjct: 247 AHMLDQLWKNKESGLMA 263
Score = 119 (46.9 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 44/137 (32%), Positives = 67/137 (48%)
Query: 8 NSRFFKSNKKQFPMFPFHETKIKYDEYG---NHSSWAYGEEIFTGPIWKIVKEGEEEIVY 64
+S FFKSNK+ MFP+HE K+K DEYG N + + TG + ++E +E V
Sbjct: 446 HSGFFKSNKRHHVMFPYHEEKVKCDEYGEIINLDDYRIADA--TGYEFVPMEEQNKENVK 503
Query: 65 GVDFNLKKERHLNGCVLDRFI----RPTVVITDTMSA-IYQQARR---RTR-DERLMTNI 115
+ + E+ NG ++D + +PT +I+ + + Q +R R D M I
Sbjct: 504 KEEPGIGAEQQANGGIVDNDVQLLEKPTKLISQRKTIEVNAQVQRIDFEGRSDGESMLKI 563
Query: 116 LQTLRNNGNVLVAVDTA 132
L LR V+V TA
Sbjct: 564 LSQLRPR-RVIVIHGTA 579
>UNIPROTKB|F1SD85 [details] [associations]
symbol:CPSF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006379
"mRNA cleavage" evidence=IEA] [GO:0006378 "mRNA polyadenylation"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IEA] InterPro:IPR001279
InterPro:IPR027075 Pfam:PF00753 SMART:SM00849 GO:GO:0016787
InterPro:IPR022712 PANTHER:PTHR11203:SF5 Pfam:PF10996 SMART:SM01027
GeneTree:ENSGT00700000104551 EMBL:CU468363
Ensembl:ENSSSCT00000002717 OMA:GANDESP Uniprot:F1SD85
Length = 385
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 68/105 (64%), Positives = 88/105 (83%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+ RD
Sbjct: 157 GTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRD 216
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
E+L+TN+L+TLR +G+VL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 217 EQLLTNVLETLRGDGSVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
>ZFIN|ZDB-GENE-040718-79 [details] [associations]
symbol:cpsf2 "cleavage and polyadenylation specific
factor 2" species:7955 "Danio rerio" [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 ZFIN:ZDB-GENE-040718-79 GO:GO:0016787
eggNOG:COG1236 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 HOGENOM:HOG000264343 CTD:53981 HOVERGEN:HBG051106
OrthoDB:EOG4MCWZQ EMBL:BC076029 IPI:IPI00512505
RefSeq:NP_001002384.1 UniGene:Dr.121547 ProteinModelPortal:Q6DHE5
STRING:Q6DHE5 PRIDE:Q6DHE5 GeneID:436657 KEGG:dre:436657
InParanoid:Q6DHE5 NextBio:20831102 ArrayExpress:Q6DHE5 Bgee:Q6DHE5
Uniprot:Q6DHE5
Length = 790
Score = 380 (138.8 bits), Expect = 3.3e-34, P = 3.3e-34
Identities = 68/105 (64%), Positives = 89/105 (84%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G IWKIVK+GEEEI+YGVDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+ RD
Sbjct: 157 GTIWKIVKDGEEEIIYGVDFNHKREIHLNGCSLESLSRPSLLITDSFNASYVQPRRKQRD 216
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
E+L+TN+++TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 217 EQLLTNVMETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
>UNIPROTKB|F1NMN0 [details] [associations]
symbol:CPSF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0006398 "histone mRNA 3'-end processing" evidence=IEA]
InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0016787 GO:GO:0005847 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 OMA:NNPFQFK GO:GO:0006398
EMBL:AADN02003653 IPI:IPI00651282 Ensembl:ENSGALT00000017538
Uniprot:F1NMN0
Length = 782
Score = 378 (138.1 bits), Expect = 5.2e-34, P = 5.2e-34
Identities = 69/105 (65%), Positives = 88/105 (83%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+ RD
Sbjct: 157 GTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRD 216
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
E+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 217 EQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
>UNIPROTKB|Q10568 [details] [associations]
symbol:CPSF2 "Cleavage and polyadenylation specificity
factor subunit 2" species:9913 "Bos taurus" [GO:0006398 "histone
mRNA 3'-end processing" evidence=ISS] [GO:0005847 "mRNA cleavage
and polyadenylation specificity factor complex" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IEA] InterPro:IPR001279
InterPro:IPR027075 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0003723 GO:GO:0016787 GO:GO:0005847 eggNOG:COG1236 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 InterPro:IPR011108
PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 HOGENOM:HOG000264343 OMA:NNPFQFK
EMBL:X75931 IPI:IPI00688446 PIR:A56351 RefSeq:NP_787002.1
UniGene:Bt.4077 ProteinModelPortal:Q10568 STRING:Q10568
PRIDE:Q10568 Ensembl:ENSBTAT00000013500 GeneID:327689
KEGG:bta:327689 CTD:53981 HOVERGEN:HBG051106 InParanoid:Q10568
OrthoDB:EOG4MCWZQ NextBio:20810154 GO:GO:0006398 Uniprot:Q10568
Length = 782
Score = 378 (138.1 bits), Expect = 5.2e-34, P = 5.2e-34
Identities = 69/105 (65%), Positives = 88/105 (83%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+ RD
Sbjct: 157 GTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRD 216
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
E+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 217 EQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
>UNIPROTKB|E2R496 [details] [associations]
symbol:CPSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006398 "histone mRNA 3'-end processing"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IEA] InterPro:IPR001279
InterPro:IPR027075 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 GO:GO:0005847 KO:K14402 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 OMA:NNPFQFK CTD:53981 GO:GO:0006398
EMBL:AAEX03005582 RefSeq:XP_537353.2 ProteinModelPortal:E2R496
Ensembl:ENSCAFT00000017381 GeneID:480230 KEGG:cfa:480230
NextBio:20855279 Uniprot:E2R496
Length = 782
Score = 378 (138.1 bits), Expect = 5.2e-34, P = 5.2e-34
Identities = 69/105 (65%), Positives = 88/105 (83%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+ RD
Sbjct: 157 GTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRD 216
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
E+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 217 EQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
>UNIPROTKB|Q9P2I0 [details] [associations]
symbol:CPSF2 "Cleavage and polyadenylation specificity
factor subunit 2" species:9606 "Homo sapiens" [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006398 "histone mRNA 3'-end processing"
evidence=IDA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] Reactome:REACT_71 InterPro:IPR001279
InterPro:IPR027075 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
EMBL:CH471061 Reactome:REACT_1675 GO:GO:0003723 GO:GO:0016787
GO:GO:0006406 GO:GO:0000398 Reactome:REACT_1788 GO:GO:0005847
GO:GO:0006369 eggNOG:COG1236 KO:K14402 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027 Reactome:REACT_78
HOGENOM:HOG000264343 OMA:NNPFQFK CTD:53981 HOVERGEN:HBG051106
OrthoDB:EOG4MCWZQ GO:GO:0006398 EMBL:AK001627 EMBL:BC070095
EMBL:AB037788 EMBL:AL442079 IPI:IPI00419531 RefSeq:NP_059133.1
UniGene:Hs.657632 UniGene:Hs.736541 ProteinModelPortal:Q9P2I0
SMR:Q9P2I0 DIP:DIP-42500N IntAct:Q9P2I0 MINT:MINT-1697677
STRING:Q9P2I0 PhosphoSite:Q9P2I0 DMDM:51338827 PaxDb:Q9P2I0
PeptideAtlas:Q9P2I0 PRIDE:Q9P2I0 Ensembl:ENST00000298875
GeneID:53981 KEGG:hsa:53981 UCSC:uc001yah.2 GeneCards:GC14P092588
HGNC:HGNC:2325 HPA:HPA024238 MIM:606028 neXtProt:NX_Q9P2I0
PharmGKB:PA26842 InParanoid:Q9P2I0 PhylomeDB:Q9P2I0 ChiTaRS:CPSF2
GenomeRNAi:53981 NextBio:56268 ArrayExpress:Q9P2I0 Bgee:Q9P2I0
CleanEx:HS_CPSF2 Genevestigator:Q9P2I0 GermOnline:ENSG00000165934
Uniprot:Q9P2I0
Length = 782
Score = 378 (138.1 bits), Expect = 5.2e-34, P = 5.2e-34
Identities = 69/105 (65%), Positives = 88/105 (83%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+ RD
Sbjct: 157 GTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRD 216
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
E+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 217 EQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
>MGI|MGI:1861601 [details] [associations]
symbol:Cpsf2 "cleavage and polyadenylation specific factor
2" species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006398 "histone
mRNA 3'-end processing" evidence=ISO] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001279 InterPro:IPR027075
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 MGI:MGI:1861601
GO:GO:0003723 GO:GO:0016787 GO:GO:0005847 eggNOG:COG1236 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 InterPro:IPR011108
PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 HOGENOM:HOG000264343 OMA:NNPFQFK
CTD:53981 HOVERGEN:HBG051106 OrthoDB:EOG4MCWZQ GO:GO:0006398
EMBL:AF012822 EMBL:BC013628 EMBL:BC007163 IPI:IPI00314302
RefSeq:NP_058552.1 UniGene:Mm.716 ProteinModelPortal:O35218
SMR:O35218 STRING:O35218 PhosphoSite:O35218 PaxDb:O35218
PRIDE:O35218 Ensembl:ENSMUST00000047357 GeneID:51786 KEGG:mmu:51786
UCSC:uc007otx.2 InParanoid:O35218 NextBio:308008 Bgee:O35218
CleanEx:MM_CPSF2 Genevestigator:O35218
GermOnline:ENSMUSG00000041781 Uniprot:O35218
Length = 782
Score = 378 (138.1 bits), Expect = 5.2e-34, P = 5.2e-34
Identities = 69/105 (65%), Positives = 88/105 (83%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+ RD
Sbjct: 157 GTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRD 216
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
E+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 217 EQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
>RGD|1309687 [details] [associations]
symbol:Cpsf2 "cleavage and polyadenylation specific factor 2,
100kDa" species:10116 "Rattus norvegicus" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IEA;ISO] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006398 "histone mRNA
3'-end processing" evidence=IEA;ISO] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001279 InterPro:IPR027075
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 RGD:1309687 GO:GO:0016787
EMBL:CH473982 GO:GO:0005847 KO:K14402 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 OMA:NNPFQFK CTD:53981
OrthoDB:EOG4MCWZQ GO:GO:0006398 IPI:IPI00189534
RefSeq:NP_001100223.1 UniGene:Rn.8038 Ensembl:ENSRNOT00000008612
GeneID:299256 KEGG:rno:299256 UCSC:RGD:1309687 NextBio:645098
Uniprot:D3Z9E6
Length = 782
Score = 378 (138.1 bits), Expect = 5.2e-34, P = 5.2e-34
Identities = 69/105 (65%), Positives = 88/105 (83%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+ RD
Sbjct: 157 GTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRD 216
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
E+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 217 EQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
>UNIPROTKB|Q9W799 [details] [associations]
symbol:cpsf2 "Cleavage and polyadenylation specificity
factor subunit 2" species:8355 "Xenopus laevis" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0005737 GO:GO:0006397
GO:GO:0003723 GO:GO:0016787 GO:GO:0005847 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 InterPro:IPR011108
PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299 SMART:SM01027
CTD:53981 HOVERGEN:HBG051106 EMBL:AF139986 RefSeq:NP_001081123.1
UniGene:Xl.3876 ProteinModelPortal:Q9W799 GeneID:394394
KEGG:xla:394394 Xenbase:XB-GENE-950598 Uniprot:Q9W799
Length = 783
Score = 377 (137.8 bits), Expect = 6.7e-34, P = 6.7e-34
Identities = 69/105 (65%), Positives = 88/105 (83%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G IWKIVK+GEEEIVY VDFN K+E HLNGC L+ RP+++ITD+ +A Y Q RR+ RD
Sbjct: 157 GTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMINRPSLLITDSFNATYVQPRRKQRD 216
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGL 153
E+L+TN+L+TLR +GNVL+AVDTAGRVLEL +L+Q+WR KD+GL
Sbjct: 217 EQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGL 261
>WB|WBGene00017313 [details] [associations]
symbol:cpsf-2 species:6239 "Caenorhabditis elegans"
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0051301 "cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0016246
"RNA interference" evidence=IMP] [GO:0040027 "negative regulation
of vulval development" evidence=IMP] InterPro:IPR001279
InterPro:IPR027075 SMART:SM00849 Pfam:PF07521 GO:GO:0005634
GO:GO:0009792 GO:GO:0016246 GO:GO:0006397 GO:GO:0003723
GO:GO:0016787 GO:GO:0000910 GO:GO:0040035 GO:GO:0040027
eggNOG:COG1236 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 GeneTree:ENSGT00700000104551 HOGENOM:HOG000264343
OMA:NNPFQFK EMBL:FO080529 PIR:T32487 RefSeq:NP_504822.1
ProteinModelPortal:O17403 SMR:O17403 STRING:O17403 PaxDb:O17403
EnsemblMetazoa:F09G2.4 GeneID:179103 KEGG:cel:CELE_F09G2.4
CTD:179103 WormBase:F09G2.4 InParanoid:O17403 NextBio:903938
Uniprot:O17403
Length = 843
Score = 314 (115.6 bits), Expect = 4.9e-27, P = 4.9e-27
Identities = 61/130 (46%), Positives = 85/130 (65%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
+++T + + G H + + G IW+I + E+IVY VDFN KKERHLNGC D
Sbjct: 131 YNQTVVLKGDSGVHFTALPAGHMLGGSIWRICRVTGEDIVYCVDFNHKKERHLNGCSFDN 190
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
F RP ++IT Q RR+ RDE+L+T IL+T+R G+ ++ +DTAGRVLEL H+L+
Sbjct: 191 FNRPHLLITGAHHISLPQMRRKDRDEQLVTKILRTVRQKGDCMIVIDTAGRVLELAHLLD 250
Query: 144 QLWRNKDSGL 153
QLW N D+GL
Sbjct: 251 QLWSNADAGL 260
>UNIPROTKB|O17403 [details] [associations]
symbol:cpsf-2 "Probable cleavage and polyadenylation
specificity factor subunit 2" species:6239 "Caenorhabditis elegans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR001279
InterPro:IPR027075 SMART:SM00849 Pfam:PF07521 GO:GO:0005634
GO:GO:0009792 GO:GO:0016246 GO:GO:0006397 GO:GO:0003723
GO:GO:0016787 GO:GO:0000910 GO:GO:0040035 GO:GO:0040027
eggNOG:COG1236 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 GeneTree:ENSGT00700000104551 HOGENOM:HOG000264343
OMA:NNPFQFK EMBL:FO080529 PIR:T32487 RefSeq:NP_504822.1
ProteinModelPortal:O17403 SMR:O17403 STRING:O17403 PaxDb:O17403
EnsemblMetazoa:F09G2.4 GeneID:179103 KEGG:cel:CELE_F09G2.4
CTD:179103 WormBase:F09G2.4 InParanoid:O17403 NextBio:903938
Uniprot:O17403
Length = 843
Score = 314 (115.6 bits), Expect = 4.9e-27, P = 4.9e-27
Identities = 61/130 (46%), Positives = 85/130 (65%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
+++T + + G H + + G IW+I + E+IVY VDFN KKERHLNGC D
Sbjct: 131 YNQTVVLKGDSGVHFTALPAGHMLGGSIWRICRVTGEDIVYCVDFNHKKERHLNGCSFDN 190
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
F RP ++IT Q RR+ RDE+L+T IL+T+R G+ ++ +DTAGRVLEL H+L+
Sbjct: 191 FNRPHLLITGAHHISLPQMRRKDRDEQLVTKILRTVRQKGDCMIVIDTAGRVLELAHLLD 250
Query: 144 QLWRNKDSGL 153
QLW N D+GL
Sbjct: 251 QLWSNADAGL 260
>TAIR|locus:2172843 [details] [associations]
symbol:CPSF100 "cleavage and polyadenylation specificity
factor 100" species:3702 "Arabidopsis thaliana" [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009793 "embryo development ending
in seed dormancy" evidence=NAS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IPI] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS;NAS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0035194 "posttranscriptional gene
silencing by RNA" evidence=IMP] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0006306 "DNA methylation" evidence=RCA] [GO:0006342 "chromatin
silencing" evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
[GO:0006397 "mRNA processing" evidence=RCA] [GO:0007267 "cell-cell
signaling" evidence=RCA] [GO:0009220 "pyrimidine ribonucleotide
biosynthetic process" evidence=RCA] [GO:0009616 "virus induced gene
silencing" evidence=RCA] [GO:0009640 "photomorphogenesis"
evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016569 "covalent chromatin modification"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] InterPro:IPR001279 InterPro:IPR027075
Pfam:PF00753 SMART:SM00849 GO:GO:0009506 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006378 EMBL:AB005244 GO:GO:0003723
GO:GO:0016787 GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027 EMBL:AF283277 EMBL:AY034982
EMBL:BT004374 IPI:IPI00521104 RefSeq:NP_197776.1 UniGene:At.25191
ProteinModelPortal:Q9LKF9 SMR:Q9LKF9 IntAct:Q9LKF9 STRING:Q9LKF9
PaxDb:Q9LKF9 PRIDE:Q9LKF9 EnsemblPlants:AT5G23880.1 GeneID:832453
KEGG:ath:AT5G23880 TAIR:At5g23880 HOGENOM:HOG000264343
InParanoid:Q9LKF9 OMA:NNPFQFK PhylomeDB:Q9LKF9
ProtClustDB:CLSN2686300 Genevestigator:Q9LKF9 GermOnline:AT5G23880
GO:GO:0035194 Uniprot:Q9LKF9
Length = 739
Score = 267 (99.0 bits), Expect = 4.2e-22, P = 4.2e-22
Identities = 53/102 (51%), Positives = 70/102 (68%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIY-QQARRRTR 107
G IW+I K+GE+ ++Y VD+N +KERHLNG VL F+RP V+ITD A+Y Q R+ R
Sbjct: 157 GSIWRITKDGED-VIYAVDYNHRKERHLNGTVLQSFVRPAVLITDAYHALYTNQTARQQR 215
Query: 108 DERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNK 149
D+ + I + L GNVL+ VDTAGRVLEL +LEQ W +
Sbjct: 216 DKEFLDTISKHLEVGGNVLLPVDTAGRVLELLLILEQHWSQR 257
>DICTYBASE|DDB_G0270392 [details] [associations]
symbol:cpsf2 "cleavage and polyadenylation
specificity factor 100 kDa subunit" species:44689 "Dictyostelium
discoideum" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA;ISS] [GO:0006378 "mRNA
polyadenylation" evidence=IEA;ISS] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA;ISS]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753 SMART:SM00849
dictyBase:DDB_G0270392 Pfam:PF07521 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0006378 GO:GO:0003723 GO:GO:0016787
GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 InterPro:IPR011108
PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299 SMART:SM01027
OMA:NNPFQFK RefSeq:XP_646760.1 ProteinModelPortal:Q55BS1
STRING:Q55BS1 EnsemblProtists:DDB0233700 GeneID:8617733
KEGG:ddi:DDB_G0270392 ProtClustDB:CLSZ2431463 Uniprot:Q55BS1
Length = 784
Score = 197 (74.4 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 46/109 (42%), Positives = 65/109 (59%)
Query: 51 IWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR-FIRPTVVITDTMSAIYQQARRRT--R 107
+WKI K G IVY +D+N + E HL+ L ++P+++ITD+ A ++T R
Sbjct: 161 VWKITK-GTYSIVYAIDYNHRNEGHLDSLQLTSDILKPSLLITDSKGVDKTLAFKKTITR 219
Query: 108 DERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW-RNKDSGLVS 155
D+ L I + LR+ GNVL+ VDTAGRVLEL +E W +NK L S
Sbjct: 220 DQSLFEQINRNLRDGGNVLIPVDTAGRVLELLLCIENYWSKNKSLALYS 268
>POMBASE|SPBC1709.15c [details] [associations]
symbol:cft2 "cleavage factor two Cft2/polyadenylation
factor CPSF-73 (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=IDA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=ISO]
[GO:0006378 "mRNA polyadenylation" evidence=ISO] [GO:0006379 "mRNA
cleavage" evidence=ISO] InterPro:IPR027075 PomBase:SPBC1709.15c
Pfam:PF07521 EMBL:CU329671 GO:GO:0006378 GenomeReviews:CU329671_GR
GO:GO:0005847 GO:GO:0006379 PIR:T39643 RefSeq:NP_595448.1
ProteinModelPortal:O74740 STRING:O74740 EnsemblFungi:SPBC1709.15c.1
GeneID:2539954 KEGG:spo:SPBC1709.15c eggNOG:COG1236 KO:K14402
OMA:ISSIATP OrthoDB:EOG4WWVSN NextBio:20801097 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027 Uniprot:O74740
Length = 797
Score = 186 (70.5 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 38/105 (36%), Positives = 61/105 (58%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC-------VLDRFIRPTVVITDTMSAIYQQ 101
G +W ++KE E ++Y VD+N K++HLNG +L+ RP +ITD +++
Sbjct: 143 GTLWSLIKESES-VLYAVDWNHSKDKHLNGAALYSNGHILEALNRPNTLITDANNSLVSI 201
Query: 102 ARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
R+ RDE + +++ +L G VL+ VD A RVLEL +L+ W
Sbjct: 202 PSRKKRDEAFIESVMSSLLKGGTVLLPVDAASRVLELCCILDNHW 246
>DICTYBASE|DDB_G0278189 [details] [associations]
symbol:ints11 "integrator complex subunit 11"
species:44689 "Dictyostelium discoideum" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
dictyBase:DDB_G0278189 Pfam:PF07521 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0016787
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 RefSeq:XP_642189.1
ProteinModelPortal:Q54YL3 PRIDE:Q54YL3 EnsemblProtists:DDB0234100
GeneID:8621396 KEGG:ddi:DDB_G0278189 OMA:RTIANET
ProtClustDB:CLSZ2729107 Uniprot:Q54YL3
Length = 744
Score = 164 (62.8 bits), Expect = 4.8e-11, P = 4.8e-11
Identities = 42/137 (30%), Positives = 70/137 (51%)
Query: 16 KKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERH 75
KK P+ H+T IK DE + ++ G + G K G+E +VY D+N+ +RH
Sbjct: 130 KKVIPV-NLHQT-IKVDEELSIKAYYAGHVL--GAAMFYAKVGDESVVYTGDYNMTPDRH 185
Query: 76 LNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRV 135
L +D+ ++P V+IT+T A + +R R+ + I + + G VL+ V GRV
Sbjct: 186 LGSAWIDQ-VKPDVLITETTYATTIRDSKRGRERDFLKRIHECVEKGGKVLIPVFALGRV 244
Query: 136 LELTHMLEQLWRNKDSG 152
EL +++ W + G
Sbjct: 245 QELCILIDSYWEQMNLG 261
>UNIPROTKB|E1B7Q9 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9913
"Bos taurus" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 OMA:MAVEYMS GeneTree:ENSGT00700000104485
EMBL:DAAA02043243 IPI:IPI00971575 Ensembl:ENSBTAT00000010020
Uniprot:E1B7Q9
Length = 598
Score = 160 (61.4 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 39/142 (27%), Positives = 71/142 (50%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDF 68
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D+
Sbjct: 122 SQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGDY 178
Query: 69 NLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVA 128
N+ +RHL +D+ RP+++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 179 NMTPDRHLGAAWIDK-CRPSLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIP 237
Query: 129 VDTAGRVLELTHMLEQLWRNKD 150
V GR EL +LE W D
Sbjct: 238 VFALGRAQELCILLETFWERMD 259
>UNIPROTKB|Q2YDM2 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9913
"Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0005634 GO:GO:0005737 GO:GO:0016787
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000231294 EMBL:BC110155 IPI:IPI00725178
UniGene:Bt.4894 ProteinModelPortal:Q2YDM2 STRING:Q2YDM2
PRIDE:Q2YDM2 HOVERGEN:HBG080215 InParanoid:Q2YDM2 OrthoDB:EOG4GXFMB
Uniprot:Q2YDM2
Length = 599
Score = 160 (61.4 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 39/142 (27%), Positives = 71/142 (50%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDF 68
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D+
Sbjct: 123 SQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGDY 179
Query: 69 NLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVA 128
N+ +RHL +D+ RP+++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 180 NMTPDRHLGAAWIDK-CRPSLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIP 238
Query: 129 VDTAGRVLELTHMLEQLWRNKD 150
V GR EL +LE W D
Sbjct: 239 VFALGRAQELCILLETFWERMD 260
>UNIPROTKB|F1RJE8 [details] [associations]
symbol:CPSF3L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 OMA:MAVEYMS GeneTree:ENSGT00700000104485
EMBL:FP102596 RefSeq:XP_003127541.3 Ensembl:ENSSSCT00000003708
GeneID:100523908 KEGG:ssc:100523908 Uniprot:F1RJE8
Length = 599
Score = 158 (60.7 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 39/142 (27%), Positives = 70/142 (49%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDF 68
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D+
Sbjct: 123 SQMIKDCMKKAVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGDY 179
Query: 69 NLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVA 128
N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 180 NMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIP 238
Query: 129 VDTAGRVLELTHMLEQLWRNKD 150
V GR EL +LE W D
Sbjct: 239 VFALGRAQELCILLETFWERMD 260
>UNIPROTKB|Q5TA45 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0005634 GO:GO:0005737 GO:GO:0016787
EMBL:AL139287 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 KO:K13148 HOVERGEN:HBG080215
OrthoDB:EOG4GXFMB CTD:54973 EMBL:AL136813 EMBL:AK000549
EMBL:AK021939 EMBL:AK023356 EMBL:AK297350 EMBL:CR533557
EMBL:BC000675 EMBL:BC007978 EMBL:BC013904 EMBL:BK005728
EMBL:BK005673 IPI:IPI00063404 IPI:IPI00306882 IPI:IPI00514973
RefSeq:NP_001243392.1 RefSeq:NP_060341.2 UniGene:Hs.6449
ProteinModelPortal:Q5TA45 SMR:Q5TA45 IntAct:Q5TA45
MINT:MINT-1482228 STRING:Q5TA45 PhosphoSite:Q5TA45 DMDM:118572557
PaxDb:Q5TA45 PRIDE:Q5TA45 DNASU:54973 Ensembl:ENST00000419704
Ensembl:ENST00000435064 Ensembl:ENST00000450926
Ensembl:ENST00000545578 GeneID:54973 KEGG:hsa:54973 UCSC:uc001aee.1
UCSC:uc001aeh.1 UCSC:uc009vjz.1 GeneCards:GC01M001236
HGNC:HGNC:26052 HPA:HPA028379 HPA:HPA029025 MIM:611354
neXtProt:NX_Q5TA45 PharmGKB:PA142672080 InParanoid:Q5TA45
PhylomeDB:Q5TA45 ChiTaRS:CPSF3L GenomeRNAi:54973 NextBio:58222
ArrayExpress:Q5TA45 Bgee:Q5TA45 Genevestigator:Q5TA45
GermOnline:ENSG00000127054 Uniprot:Q5TA45
Length = 600
Score = 154 (59.3 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 38/138 (27%), Positives = 69/138 (50%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDF 68
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D+
Sbjct: 123 SQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGDY 179
Query: 69 NLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVA 128
N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 180 NMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIP 238
Query: 129 VDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 239 VFALGRAQELCILLETFW 256
>MGI|MGI:1919207 [details] [associations]
symbol:Cpsf3l "cleavage and polyadenylation specific factor
3-like" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 MGI:MGI:1919207 GO:GO:0005737 GO:GO:0016787
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000231294 KO:K13148 OMA:MAVEYMS
GeneTree:ENSGT00700000104485 GO:GO:0032039 GO:GO:0016180
HOVERGEN:HBG080215 OrthoDB:EOG4GXFMB CTD:54973 EMBL:AK010425
EMBL:AK090206 EMBL:AK150436 EMBL:AK152740 EMBL:AK167607
EMBL:AK172533 EMBL:BC008240 EMBL:BC011155 IPI:IPI00467084
RefSeq:NP_082296.1 UniGene:Mm.259270 UniGene:Mm.475640
ProteinModelPortal:Q9CWS4 SMR:Q9CWS4 STRING:Q9CWS4
PhosphoSite:Q9CWS4 PaxDb:Q9CWS4 PRIDE:Q9CWS4
Ensembl:ENSMUST00000030901 GeneID:71957 KEGG:mmu:71957
InParanoid:Q9CWS4 NextBio:335052 Bgee:Q9CWS4 Genevestigator:Q9CWS4
GermOnline:ENSMUSG00000029034 Uniprot:Q9CWS4
Length = 600
Score = 154 (59.3 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 38/138 (27%), Positives = 69/138 (50%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDF 68
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D+
Sbjct: 123 SQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGDY 179
Query: 69 NLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVA 128
N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 180 NMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIP 238
Query: 129 VDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 239 VFALGRAQELCILLETFW 256
>RGD|1306841 [details] [associations]
symbol:Cpsf3l "cleavage and polyadenylation specific factor
3-like" species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 RGD:1306841 GO:GO:0005634 GO:GO:0005737
GO:GO:0016787 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 HOGENOM:HOG000231294 KO:K13148
OMA:MAVEYMS GeneTree:ENSGT00700000104485 HOVERGEN:HBG080215
OrthoDB:EOG4GXFMB CTD:54973 EMBL:BC105303 IPI:IPI00365477
RefSeq:NP_001029064.1 UniGene:Rn.98615 ProteinModelPortal:Q3MHC2
STRING:Q3MHC2 Ensembl:ENSRNOT00000026725 GeneID:298688
KEGG:rno:298688 InParanoid:Q3MHC2 NextBio:644186
Genevestigator:Q3MHC2 GermOnline:ENSRNOG00000019712 Uniprot:Q3MHC2
Length = 600
Score = 154 (59.3 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 38/138 (27%), Positives = 69/138 (50%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDF 68
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D+
Sbjct: 123 SQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGDY 179
Query: 69 NLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVA 128
N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 180 NMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIP 238
Query: 129 VDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 239 VFALGRAQELCILLETFW 256
>UNIPROTKB|G3V1S5 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 EMBL:AL139287 EMBL:CH471183 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 KO:K13148 OMA:MAVEYMS
CTD:54973 UniGene:Hs.6449 GeneID:54973 KEGG:hsa:54973
HGNC:HGNC:26052 ChiTaRS:CPSF3L GenomeRNAi:54973
RefSeq:NP_001243385.1 ProteinModelPortal:G3V1S5 SMR:G3V1S5
Ensembl:ENST00000540437 ArrayExpress:G3V1S5 Bgee:G3V1S5
Uniprot:G3V1S5
Length = 606
Score = 154 (59.3 bits), Expect = 4.2e-10, P = 4.2e-10
Identities = 38/138 (27%), Positives = 69/138 (50%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDF 68
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D+
Sbjct: 129 SQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGDY 185
Query: 69 NLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVA 128
N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 186 NMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIP 244
Query: 129 VDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 245 VFALGRAQELCILLETFW 262
>UNIPROTKB|F1NV30 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9031
"Gallus gallus" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 OMA:MAVEYMS GeneTree:ENSGT00700000104485
IPI:IPI00571913 EMBL:AADN02040858 Ensembl:ENSGALT00000002586
Uniprot:F1NV30
Length = 600
Score = 152 (58.6 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 39/138 (28%), Positives = 69/138 (50%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDF 68
S+ K K+ H+T ++ DE ++ Y + +++I K G E +VY D+
Sbjct: 123 SQMIKDCMKKVVAVHLHQT-VQVDEELEIKAY-YAGHVLGAAMFQI-KVGCESVVYTGDY 179
Query: 69 NLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVA 128
N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 180 NMTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIP 238
Query: 129 VDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 239 VFALGRAQELCILLETFW 256
>UNIPROTKB|Q5ZIH0 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9031
"Gallus gallus" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0016787 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000231294 KO:K13148 GO:GO:0032039 GO:GO:0016180
HOVERGEN:HBG080215 OrthoDB:EOG4GXFMB EMBL:AJ720814 IPI:IPI00571913
RefSeq:NP_001012854.1 UniGene:Gga.13403 ProteinModelPortal:Q5ZIH0
STRING:Q5ZIH0 GeneID:419418 KEGG:gga:419418 CTD:54973
InParanoid:Q5ZIH0 NextBio:20822477 Uniprot:Q5ZIH0
Length = 600
Score = 152 (58.6 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 39/138 (28%), Positives = 69/138 (50%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDF 68
S+ K K+ H+T ++ DE ++ Y + +++I K G E +VY D+
Sbjct: 123 SQMIKDCMKKVVAVHLHQT-VQVDEELEIKAY-YAGHVLGAAMFQI-KVGCESVVYTGDY 179
Query: 69 NLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVA 128
N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G VL+
Sbjct: 180 NMTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIP 238
Query: 129 VDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 239 VFALGRAQELCILLETFW 256
>UNIPROTKB|E2QY53 [details] [associations]
symbol:CPSF3L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 OMA:MAVEYMS GeneTree:ENSGT00700000104485
EMBL:AAEX03003844 RefSeq:XP_003639102.1 Ensembl:ENSCAFT00000030626
GeneID:100855777 KEGG:cfa:100855777 Uniprot:E2QY53
Length = 600
Score = 149 (57.5 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 37/138 (26%), Positives = 68/138 (49%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDF 68
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D+
Sbjct: 123 SQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGDY 179
Query: 69 NLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVA 128
N+ +RHL +D+ RP ++IT++ A + +R R+ + + + + G VL+
Sbjct: 180 NMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHEAVERGGKVLIP 238
Query: 129 VDTAGRVLELTHMLEQLW 146
V GR EL +LE W
Sbjct: 239 VFALGRAQELCILLETFW 256
>UNIPROTKB|G4N6C6 [details] [associations]
symbol:MGG_06570 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=ISS] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0005849 "mRNA cleavage factor complex"
evidence=ISS] [GO:0006378 "mRNA polyadenylation" evidence=ISS]
[GO:0006379 "mRNA cleavage" evidence=ISS] InterPro:IPR027075
Pfam:PF07521 GO:GO:0006378 EMBL:CM001234 GO:GO:0005847
GO:GO:0006379 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 RefSeq:XP_003716967.1 EnsemblFungi:MGG_06570T0
GeneID:2684725 KEGG:mgr:MGG_06570 Uniprot:G4N6C6
Length = 962
Score = 149 (57.5 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 38/116 (32%), Positives = 61/116 (52%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC-------------VLDRFIRPTVVITDTM 95
G IW I + G E IVY VD+NL ++ G V+++ +PT ++ T
Sbjct: 188 GTIWHI-QHGMESIVYAVDWNLARDNVYAGAAWMGGGHGGGGAEVIEQLRKPTALVCSTR 246
Query: 96 SAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDS 151
+A R RD++L+ + + G VL+ VD++ RVLEL ++LE WR++ S
Sbjct: 247 TA-EGGLTRAARDKQLLDTMRMAISRGGTVLIPVDSSARVLELAYLLEHAWRSEAS 301
>ASPGD|ASPL0000040420 [details] [associations]
symbol:AN3082 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR027075 EMBL:BN001306 EMBL:AACD01000051 eggNOG:COG1236
KO:K14402 OrthoDB:EOG4WWVSN InterPro:IPR022712 InterPro:IPR025069
PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299 SMART:SM01027
OMA:YSQPHQP RefSeq:XP_660686.1 EnsemblFungi:CADANIAT00009996
GeneID:2874210 KEGG:ani:AN3082.2 HOGENOM:HOG000196366
Uniprot:Q5B8P8
Length = 1005
Score = 146 (56.5 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 41/114 (35%), Positives = 56/114 (49%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGC------------VLDRFIRPTVVITDTMS 96
G IW I + G E IVY VD+N +E + G V+++ +PT +I T
Sbjct: 202 GTIWHI-QHGMESIVYAVDWNQARESVVAGAAWFGGSGASGTEVIEQLRKPTALICSTRG 260
Query: 97 A--IYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLWRN 148
R+ RDE L+ I TL G VL+ DT+ RVLEL + LE WR+
Sbjct: 261 GDKFALPGGRKKRDEILLDMIRSTLVKGGTVLIPTDTSARVLELAYALEHAWRD 314
>FB|FBgn0039691 [details] [associations]
symbol:IntS11 "Integrator 11" species:7227 "Drosophila
melanogaster" [GO:0006379 "mRNA cleavage" evidence=ISS] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0006378 "mRNA polyadenylation" evidence=ISS]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0034472 "snRNA
3'-end processing" evidence=IDA] [GO:0016180 "snRNA processing"
evidence=ISS] [GO:0032039 "integrator complex" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR001279
SMART:SM00849 Pfam:PF07521 EMBL:AE014297 GO:GO:0022008
GO:GO:0006378 GO:GO:0016787 GO:GO:0005847 GO:GO:0006379
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 OMA:MAVEYMS GeneTree:ENSGT00700000104485
GO:GO:0034472 EMBL:AY061097 RefSeq:NP_651721.1 UniGene:Dm.3722
SMR:Q9VAH9 STRING:Q9VAH9 EnsemblMetazoa:FBtr0085476 GeneID:43506
KEGG:dme:Dmel_CG1972 UCSC:CG1972-RA CTD:43506 FlyBase:FBgn0039691
InParanoid:Q9VAH9 OrthoDB:EOG47D7X3 GenomeRNAi:43506 NextBio:834295
Uniprot:Q9VAH9
Length = 597
Score = 134 (52.2 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 34/131 (25%), Positives = 64/131 (48%)
Query: 16 KKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERH 75
KK P+ H++ + + + +A G + W +K G + +VY D+N+ +RH
Sbjct: 131 KKVIPV-TLHQSMMVDTDLEIKAYYA-GHVLGAAMFW--IKVGSQSVVYTGDYNMTPDRH 186
Query: 76 LNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRV 135
L +D+ RP ++I+++ A + +R R+ + + + + G VL+ V GR
Sbjct: 187 LGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPVFALGRA 245
Query: 136 LELTHMLEQLW 146
EL +LE W
Sbjct: 246 QELCILLETYW 256
>WB|WBGene00008642 [details] [associations]
symbol:F10B5.8 species:6239 "Caenorhabditis elegans"
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0009792 EMBL:Z48334 GO:GO:0016787 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000231294 KO:K13148 OMA:MAVEYMS
GeneTree:ENSGT00700000104485 PIR:T20694 RefSeq:NP_495706.2
ProteinModelPortal:Q9U3K2 SMR:Q9U3K2 STRING:Q9U3K2 PaxDb:Q9U3K2
EnsemblMetazoa:F10B5.8 GeneID:174310 KEGG:cel:CELE_F10B5.8
UCSC:F10B5.8 CTD:174310 WormBase:F10B5.8 InParanoid:Q9U3K2
NextBio:883468 Uniprot:Q9U3K2
Length = 608
Score = 128 (50.1 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 25/92 (27%), Positives = 49/92 (53%)
Query: 55 VKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTN 114
++ G+ ++Y D+N+ +RHL + +RPTV+I+++ A + +R R+ +
Sbjct: 170 IRLGDHSVLYTGDYNMTPDRHLGAARVLPGVRPTVLISESTYATTIRDSKRARERDFLRK 229
Query: 115 ILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + + G V++ V GR EL +LE W
Sbjct: 230 VHECVMKGGKVIIPVFALGRAQELCILLESYW 261
>ZFIN|ZDB-GENE-030131-3275 [details] [associations]
symbol:cpsf3 "cleavage and polyadenylation
specific factor 3" species:7955 "Danio rerio" [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 ZFIN:ZDB-GENE-030131-3275 GO:GO:0016787
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
KO:K14403 InterPro:IPR021718 Pfam:PF11718 SMART:SM01098 CTD:51692
HOVERGEN:HBG051107 EMBL:AY648793 IPI:IPI00509063
RefSeq:NP_001003836.1 UniGene:Dr.77231 ProteinModelPortal:Q6DRG6
SMR:Q6DRG6 STRING:Q6DRG6 GeneID:324554 KEGG:dre:324554
NextBio:20808833 ArrayExpress:Q6DRG6 Uniprot:Q6DRG6
Length = 690
Score = 127 (49.8 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 30/125 (24%), Positives = 57/125 (45%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 147 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPS 202
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
++P ++IT++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 203 -VKPDILITESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILD 261
Query: 144 QLWRN 148
+ W+N
Sbjct: 262 EYWQN 266
>TAIR|locus:2206076 [details] [associations]
symbol:CPSF73-I "cleavage and polyadenylation specificity
factor 73-I" species:3702 "Arabidopsis thaliana" [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
[GO:0006397 "mRNA processing" evidence=RCA] [GO:0009855
"determination of bilateral symmetry" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010073 "meristem
maintenance" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0031507 "heterochromatin assembly" evidence=RCA]
[GO:0045787 "positive regulation of cell cycle" evidence=RCA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006397
GO:GO:0090305 EMBL:AC018908 GO:GO:0004518 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
EMBL:AY140900 EMBL:AY150478 EMBL:AY074280 EMBL:AK316692
EMBL:AK316794 IPI:IPI00533462 PIR:G96635 RefSeq:NP_001031215.1
RefSeq:NP_176297.1 RefSeq:NP_849835.1 UniGene:At.23510
ProteinModelPortal:Q9C952 SMR:Q9C952 IntAct:Q9C952 STRING:Q9C952
PaxDb:Q9C952 PRIDE:Q9C952 EnsemblPlants:AT1G61010.1
EnsemblPlants:AT1G61010.2 EnsemblPlants:AT1G61010.3 GeneID:842393
KEGG:ath:AT1G61010 TAIR:At1g61010 HOGENOM:HOG000203394
InParanoid:Q9C952 KO:K14403 OMA:YVSFSAH PhylomeDB:Q9C952
ProtClustDB:CLSN2681829 Genevestigator:Q9C952 InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 Uniprot:Q9C952
Length = 693
Score = 126 (49.4 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 37/136 (27%), Positives = 58/136 (42%)
Query: 13 KSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKK 72
KS K + FH+T E W Y G +V I+Y D++ ++
Sbjct: 140 KSMDK-IEVIDFHQTV----EVNGIKFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSREE 194
Query: 73 ERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTA 132
+RHL L +F P + I ++ S + R R++R I T+ G VL+
Sbjct: 195 DRHLRAAELPQF-SPDICIIESTSGVQLHQSRHIREKRFTDVIHSTVAQGGRVLIPAFAL 253
Query: 133 GRVLELTHMLEQLWRN 148
GR EL +L++ W N
Sbjct: 254 GRAQELLLILDEYWAN 269
>UNIPROTKB|G5E9W3 [details] [associations]
symbol:CPSF3 "Cleavage and polyadenylation-specificity
factor subunit 3" species:9606 "Homo sapiens" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 EMBL:CH471053 GO:GO:0003723 GO:GO:0004521
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098 GO:GO:0008409
EMBL:AC080162 UniGene:Hs.515972 HGNC:HGNC:2326 ChiTaRS:CPSF3
ProteinModelPortal:G5E9W3 SMR:G5E9W3 PRIDE:G5E9W3
Ensembl:ENST00000460593 ArrayExpress:G5E9W3 Bgee:G5E9W3
Uniprot:G5E9W3
Length = 647
Score = 121 (47.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/125 (24%), Positives = 56/125 (44%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 103 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 158
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 159 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 217
Query: 144 QLWRN 148
+ W+N
Sbjct: 218 EYWQN 222
>UNIPROTKB|P79101 [details] [associations]
symbol:CPSF3 "Cleavage and polyadenylation specificity
factor subunit 3" species:9913 "Bos taurus" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0006398 "histone mRNA 3'-end processing"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0004521
"endoribonuclease activity" evidence=ISS] [GO:0008409 "5'-3'
exonuclease activity" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0046872 GO:GO:0003723 GO:GO:0030529 GO:GO:0004521
GO:GO:0005847 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 GO:GO:0006398 HOGENOM:HOG000203394
KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
EMBL:X95906 EMBL:BC104553 IPI:IPI00708839 RefSeq:NP_776709.1
UniGene:Bt.5045 ProteinModelPortal:P79101 SMR:P79101 STRING:P79101
PRIDE:P79101 Ensembl:ENSBTAT00000026303 GeneID:281712
KEGG:bta:281712 CTD:51692 GeneTree:ENSGT00700000104485
HOVERGEN:HBG051107 InParanoid:P79101 OrthoDB:EOG4FN4H6
NextBio:20805634 ArrayExpress:P79101 GO:GO:0008409 Uniprot:P79101
Length = 684
Score = 121 (47.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 30/125 (24%), Positives = 56/125 (44%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>UNIPROTKB|Q9UKF6 [details] [associations]
symbol:CPSF3 "Cleavage and polyadenylation specificity
factor subunit 3" species:9606 "Homo sapiens" [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008409 "5'-3' exonuclease activity" evidence=ISS] [GO:0004521
"endoribonuclease activity" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006398 "histone mRNA 3'-end processing"
evidence=IDA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
EMBL:AF017269 Pfam:PF07521 EMBL:AF171877 EMBL:CH471053
GO:GO:0046872 Reactome:REACT_1675 GO:GO:0006378 GO:GO:0003723
GO:GO:0030529 GO:GO:0006406 GO:GO:0004521 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0005847 GO:GO:0006379 GO:GO:0006369
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 Reactome:REACT_78 GO:GO:0006398 HOGENOM:HOG000203394
KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
CTD:51692 HOVERGEN:HBG051107 OrthoDB:EOG4FN4H6 GO:GO:0008409
EMBL:AC080162 EMBL:BC011654 EMBL:BC020211 IPI:IPI00007818
RefSeq:NP_057291.1 UniGene:Hs.515972 PDB:2I7T PDB:2I7V PDBsum:2I7T
PDBsum:2I7V ProteinModelPortal:Q9UKF6 SMR:Q9UKF6 DIP:DIP-42501N
MINT:MINT-1742891 STRING:Q9UKF6 PhosphoSite:Q9UKF6 DMDM:18203503
PaxDb:Q9UKF6 PeptideAtlas:Q9UKF6 PRIDE:Q9UKF6 DNASU:51692
Ensembl:ENST00000238112 GeneID:51692 KEGG:hsa:51692 UCSC:uc002qzo.1
GeneCards:GC02P009514 HGNC:HGNC:2326 HPA:HPA034657 MIM:606029
neXtProt:NX_Q9UKF6 PharmGKB:PA26843 InParanoid:Q9UKF6
PhylomeDB:Q9UKF6 ChiTaRS:CPSF3 EvolutionaryTrace:Q9UKF6
GenomeRNAi:51692 NextBio:55702 ArrayExpress:Q9UKF6 Bgee:Q9UKF6
CleanEx:HS_CPSF3 Genevestigator:Q9UKF6 GermOnline:ENSG00000119203
Uniprot:Q9UKF6
Length = 684
Score = 121 (47.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 30/125 (24%), Positives = 56/125 (44%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>MGI|MGI:1859328 [details] [associations]
symbol:Cpsf3 "cleavage and polyadenylation specificity
factor 3" species:10090 "Mus musculus" [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISO;IDA] [GO:0006378 "mRNA polyadenylation" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006398 "histone
mRNA 3'-end processing" evidence=ISO;IDA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IDA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
MGI:MGI:1859328 GO:GO:0046872 GO:GO:0003723 GO:GO:0030529
GO:GO:0004521 GO:GO:0005847 eggNOG:COG1236 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 GO:GO:0006398
HOGENOM:HOG000203394 KO:K14403 OMA:YVSFSAH InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 CTD:51692 GeneTree:ENSGT00700000104485
HOVERGEN:HBG051107 OrthoDB:EOG4FN4H6 GO:GO:0008409 ChiTaRS:CPSF3
EMBL:AF203969 EMBL:BC023297 IPI:IPI00135099 RefSeq:NP_061283.2
UniGene:Mm.356778 ProteinModelPortal:Q9QXK7 SMR:Q9QXK7
STRING:Q9QXK7 PhosphoSite:Q9QXK7 PaxDb:Q9QXK7 PRIDE:Q9QXK7
Ensembl:ENSMUST00000067284 GeneID:54451 KEGG:mmu:54451
InParanoid:Q8CIM0 NextBio:311332 Bgee:Q9QXK7 CleanEx:MM_CPSF3
Genevestigator:Q9QXK7 GermOnline:ENSMUSG00000054309 Uniprot:Q9QXK7
Length = 684
Score = 121 (47.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 30/125 (24%), Positives = 56/125 (44%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>UNIPROTKB|F1NKW5 [details] [associations]
symbol:CPSF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0006398 "histone mRNA 3'-end processing"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0003723 GO:GO:0004521 GO:GO:0005847
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 GO:GO:0008409 EMBL:AADN02018718
IPI:IPI00600642 Ensembl:ENSGALT00000026493 Uniprot:F1NKW5
Length = 685
Score = 121 (47.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 30/125 (24%), Positives = 56/125 (44%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>RGD|1305767 [details] [associations]
symbol:Cpsf3 "cleavage and polyadenylation specific factor 3,
73kDa" species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0004521 "endoribonuclease activity" evidence=ISO]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISO] [GO:0006398 "histone mRNA 3'-end processing"
evidence=ISO] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISO] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 RGD:1305767 GO:GO:0016787 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000203394 KO:K14403 InterPro:IPR021718 Pfam:PF11718
SMART:SM01098 CTD:51692 HOVERGEN:HBG051107 OrthoDB:EOG4FN4H6
UniGene:Rn.100522 EMBL:BC099817 IPI:IPI00365532
RefSeq:NP_001025201.1 ProteinModelPortal:Q499P4 SMR:Q499P4
STRING:Q499P4 GeneID:298916 KEGG:rno:298916 InParanoid:Q499P4
NextBio:644507 Genevestigator:Q499P4 Uniprot:Q499P4
Length = 685
Score = 121 (47.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 30/125 (24%), Positives = 56/125 (44%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGMKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>UNIPROTKB|G3V6W7 [details] [associations]
symbol:Cpsf3 "Protein Cpsf3" species:10116 "Rattus
norvegicus" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
RGD:1305767 GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 EMBL:CH473947 OMA:YVSFSAH
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 UniGene:Rn.100522
Ensembl:ENSRNOT00000009652 Uniprot:G3V6W7
Length = 685
Score = 121 (47.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 30/125 (24%), Positives = 56/125 (44%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 140 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 195
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 196 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 254
Query: 144 QLWRN 148
+ W+N
Sbjct: 255 EYWQN 259
>UNIPROTKB|I3LKR1 [details] [associations]
symbol:CPSF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008409 "5'-3' exonuclease activity" evidence=IEA]
[GO:0006398 "histone mRNA 3'-end processing" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0003723 GO:GO:0004521 GO:GO:0005847 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 OMA:YVSFSAH
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 GO:GO:0008409 EMBL:FP312696
Ensembl:ENSSSCT00000027309 Uniprot:I3LKR1
Length = 687
Score = 121 (47.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 30/125 (24%), Positives = 56/125 (44%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 143 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 198
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 199 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 257
Query: 144 QLWRN 148
+ W+N
Sbjct: 258 EYWQN 262
>UNIPROTKB|E2R7R2 [details] [associations]
symbol:CPSF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718
SMART:SM01098 GeneTree:ENSGT00700000104485 EMBL:AAEX03010701
RefSeq:XP_003639652.1 Ensembl:ENSCAFT00000005417 GeneID:100856414
KEGG:cfa:100856414 Uniprot:E2R7R2
Length = 717
Score = 121 (47.7 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 30/125 (24%), Positives = 56/125 (44%)
Query: 24 FHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDR 83
FHE K E W Y G +++ +++Y DF+ +++RHL +
Sbjct: 173 FHEVK----EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN 228
Query: 84 FIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLE 143
I+P ++I ++ + +R R+ R + + G L+ V GR EL +L+
Sbjct: 229 -IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILD 287
Query: 144 QLWRN 148
+ W+N
Sbjct: 288 EYWQN 292
>POMBASE|SPAC17G6.16c [details] [associations]
symbol:ysh1 "mRNA cleavage and polyadenylation
specificity factor complex endoribonuclease subunit Ysh1"
species:4896 "Schizosaccharomyces pombe" [GO:0004521
"endoribonuclease activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IC]
[GO:0006379 "mRNA cleavage" evidence=IC] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 PomBase:SPAC17G6.16c Pfam:PF07521 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0006378
GO:GO:0004521 GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000203394 InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
OrthoDB:EOG41ZJK7 PIR:T37848 RefSeq:NP_594263.2 STRING:O13794
EnsemblFungi:SPAC17G6.16c.1 GeneID:2542258 NextBio:20803322
Uniprot:O13794
Length = 757
Score = 118 (46.6 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 28/87 (32%), Positives = 48/87 (55%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL+ + RP V+IT++ R ++ RL+ I T+RN
Sbjct: 181 ILFTGDYSREEDRHLHVAEVPPK-RPDVLITESTYGTASHQPRLEKEARLLNIIHSTIRN 239
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLWRN 148
G VL+ V GR EL +L++ W N
Sbjct: 240 GGRVLMPVFALGRAQELLLILDEYWNN 266
>ASPGD|ASPL0000060573 [details] [associations]
symbol:AN0990 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0005634 EMBL:BN001308
GO:GO:0046872 GO:GO:0006397 GO:GO:0090305 GO:GO:0004519
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000203394 KO:K14403 InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 EMBL:AACD01000015 RefSeq:XP_658594.1
ProteinModelPortal:Q5BEP0 STRING:Q5BEP0
EnsemblFungi:CADANIAT00001661 GeneID:2876766 KEGG:ani:AN0990.2
OMA:EISFAAH OrthoDB:EOG41ZJK7 Uniprot:Q5BEP0
Length = 884
Score = 114 (45.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 62 IVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRN 121
I++ D++ +++RHL + R ++ V+IT++ I R R+ LM +I L
Sbjct: 190 ILFTGDYSREEDRHLIPATVPRGVKIDVLITESTFGISSNPPRLEREAALMKSITGVLNR 249
Query: 122 NGNVLVAVDTAGRVLELTHMLEQLW 146
G VL+ V GR EL +LE+ W
Sbjct: 250 GGRVLMPVFALGRAQELLLILEEYW 274
>UNIPROTKB|E9PNS4 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 GO:GO:0016787
EMBL:AL139287 HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI00984775
ProteinModelPortal:E9PNS4 SMR:E9PNS4 Ensembl:ENST00000528879
ArrayExpress:E9PNS4 Bgee:E9PNS4 Uniprot:E9PNS4
Length = 278
Score = 109 (43.4 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 28/115 (24%), Positives = 57/115 (49%)
Query: 9 SRFFKSNKKQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDF 68
S+ K K+ H+T ++ D+ ++ Y + +++I K G E +VY D+
Sbjct: 123 SQMIKDCMKKVVAVHLHQT-VQVDDELEIKAY-YAGHVLGAAMFQI-KVGSESVVYTGDY 179
Query: 69 NLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNG 123
N+ +RHL +D+ RP ++IT++ A + +R R+ + + +T+ G
Sbjct: 180 NMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGG 233
>FB|FBgn0261065 [details] [associations]
symbol:Cpsf73 "Cleavage and polyadenylation specificity
factor 73" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS;NAS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS;IMP] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006398 "histone mRNA 3'-end
processing" evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR001279
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 EMBL:AE014297 GO:GO:0022008
GO:GO:0003677 GO:GO:0006378 GO:GO:0016787 GO:GO:0005847
GO:GO:0006379 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 GO:GO:0006398 KO:K14403 OMA:YVSFSAH
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 EMBL:AY119128 RefSeq:NP_650738.1
UniGene:Dm.13714 SMR:Q9VE51 IntAct:Q9VE51 MINT:MINT-804945
STRING:Q9VE51 EnsemblMetazoa:FBtr0083690 GeneID:42240
KEGG:dme:Dmel_CG7698 UCSC:CG7698-RA CTD:42240 FlyBase:FBgn0261065
InParanoid:Q9VE51 OrthoDB:EOG4P5HR4 GenomeRNAi:42240 NextBio:827838
Uniprot:Q9VE51
Length = 684
Score = 111 (44.1 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 25/91 (27%), Positives = 50/91 (54%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I+Y DF+ +++RHL + ++P V+IT++ + +R R+ R + + + ++
Sbjct: 179 KILYTGDFSRQEDRHLMAAEVPP-MKPDVLITESTYGTHIHEKREDRENRFTSLVQKIVQ 237
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW-RNKD 150
G L+ V GR EL +L++ W +N D
Sbjct: 238 QGGRCLIPVFALGRAQELLLILDEFWSQNPD 268
>DICTYBASE|DDB_G0274799 [details] [associations]
symbol:cpsf3 "cleavage and polyadenylation
specificity factor 73 kDa subunit" species:44689 "Dictyostelium
discoideum" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;IC] [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
dictyBase:DDB_G0274799 Pfam:PF07521 GO:GO:0046872 GO:GO:0006378
GenomeReviews:CM000151_GR EMBL:AAFI02000012 GO:GO:0003730
GO:GO:0004519 GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
RefSeq:XP_643926.1 ProteinModelPortal:Q86A79 SMR:Q86A79
STRING:Q86A79 EnsemblProtists:DDB0233696 GeneID:8619353
KEGG:ddi:DDB_G0274799 ProtClustDB:CLSZ2431003 Uniprot:Q86A79
Length = 774
Score = 108 (43.1 bits), Expect = 0.00040, P = 0.00040
Identities = 24/86 (27%), Positives = 46/86 (53%)
Query: 61 EIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLR 120
+I+Y DF+ +++RHL G ++ V+I ++ + R R++R +++ Q +
Sbjct: 200 KILYTGDFSRQEDRHLMGAETPP-VKVDVLIIESTYGVQVHEPRLEREKRFTSSVHQVVE 258
Query: 121 NNGNVLVAVDTAGRVLELTHMLEQLW 146
NG L+ V GR EL +L++ W
Sbjct: 259 RNGKCLIPVFALGRAQELLLILDEYW 284
>TAIR|locus:2065368 [details] [associations]
symbol:CPSF73-II "AT2G01730" species:3702 "Arabidopsis
thaliana" [GO:0003824 "catalytic activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0010197 "polar nucleus
fusion" evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006397 GO:GO:0090305 EMBL:AC006069
GO:GO:0004518 GO:GO:0010197 eggNOG:COG1236 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 EMBL:AY168923
EMBL:AK221561 IPI:IPI00536069 PIR:D84428 RefSeq:NP_178282.2
UniGene:At.42473 ProteinModelPortal:Q8GUU3 SMR:Q8GUU3 IntAct:Q8GUU3
STRING:Q8GUU3 PaxDb:Q8GUU3 PRIDE:Q8GUU3 EnsemblPlants:AT2G01730.1
GeneID:814702 KEGG:ath:AT2G01730 TAIR:At2g01730
HOGENOM:HOG000231294 InParanoid:Q56XW2 KO:K13148 OMA:MAVEYMS
Genevestigator:Q8GUU3 Uniprot:Q8GUU3
Length = 613
Score = 107 (42.7 bits), Expect = 0.00043, P = 0.00043
Identities = 24/98 (24%), Positives = 47/98 (47%)
Query: 49 GPIWKIVKEGEEEIVYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARRRTRD 108
G + K G+ IVY D+N+ +RHL +DR ++ ++I+++ A + + R+
Sbjct: 159 GAVMVYAKMGDAAIVYTGDYNMTTDRHLGAAKIDR-LQLDLLISESTYATTIRGSKYPRE 217
Query: 109 ERLMTNILQTLRNNGNVLVAVDTAGRVLELTHMLEQLW 146
+ + + + G L+ GR EL +L+ W
Sbjct: 218 REFLQAVHKCVAGGGKALIPSFALGRAQELCMLLDDYW 255
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.137 0.413 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 155 155 0.00096 105 3 11 22 0.47 31
30 0.41 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 47
No. of states in DFA: 610 (65 KB)
Total size of DFA: 161 KB (2095 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:03
No. of threads or processors used: 24
Search cpu time: 16.09u 0.09s 16.18t Elapsed: 00:00:23
Total cpu time: 16.09u 0.09s 16.18t Elapsed: 00:00:26
Start: Thu Aug 15 12:44:41 2013 End: Thu Aug 15 12:45:07 2013