RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13344
         (155 letters)



>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein
           2, CFT2 {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 514

 Score = 64.5 bits (156), Expect = 2e-13
 Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 9/139 (6%)

Query: 17  KQFPMFPFHETKIKYDEYGNHSSWAYGEEIFTGPIWKIVKEGEEEIVYGVDFNLKKERHL 76
                  + +       Y   +  AY   +  G     +    E++VY   +N  ++  L
Sbjct: 129 DHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNIL 188

Query: 77  NGC--------VLDRFIRPTVVITDTMSAIYQQARRRTRDERLMTNILQTLRNNGNVLVA 128
           N           L   +RP+ +IT        Q   + R +     + + L ++G+V++ 
Sbjct: 189 NAASILDATGKPLSTLMRPSAIITTLDRFGSSQ-PFKKRSKIFKDTLKKGLSSDGSVIIP 247

Query: 129 VDTAGRVLELTHMLEQLWR 147
           VD +G+ L+L   + +L  
Sbjct: 248 VDMSGKFLDLFTQVHELLF 266



 Score = 24.8 bits (53), Expect = 6.2
 Identities = 4/26 (15%), Positives = 9/26 (34%)

Query: 10  RFFKSNKKQFPMFPFHETKIKYDEYG 35
              + +++ +  FP        D Y 
Sbjct: 382 EIVEQDERNWKTFPEDGKSFLCDNYI 407


>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
           niger [TaxId: 5061]}
          Length = 385

 Score = 25.2 bits (54), Expect = 4.8
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 9/42 (21%)

Query: 63  VYGVDFNLKKERHLNGCVLDRFIRPTVVITDTMSAIYQQARR 104
           VYGV   L+        V+D  I PT + +  M+  Y  A +
Sbjct: 340 VYGVQ-GLR--------VIDGSIPPTQMSSHVMTVFYAMALK 372


>g1apy.1 d.153.1.5 (A:,B:) Glycosylasparaginase
           (aspartylglucosaminidase, AGA) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 302

 Score = 24.6 bits (53), Expect = 5.8
 Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 4/38 (10%)

Query: 117 QTLRNNGNVLVAVDTAGRVLELTHMLEQLWRNKDSGLV 154
           + L + G+ L AV++   + E     EQ   +   G  
Sbjct: 21  RALASGGSALDAVESGCAMCE----REQCDGSVGFGGS 54


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0545    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 601,286
Number of extensions: 27409
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 7
Length of query: 155
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,336,656
Effective search space: 102922512
Effective search space used: 102922512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.1 bits)