BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13345
(276 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9V3D6|CPSF2_DROME Probable cleavage and polyadenylation specificity factor subunit 2
OS=Drosophila melanogaster GN=Cpsf100 PE=1 SV=1
Length = 756
Score = 162 bits (409), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 77/130 (59%), Positives = 101/130 (77%), Gaps = 4/130 (3%)
Query: 24 LCHSLAELAK--IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPS-PKVVLVST 80
+ +++ E AK IEWMSDKL K+FEGARNNPF FKH++LCHSLA++ K+P+ PKVVL ST
Sbjct: 272 VSYNVIEFAKSQIEWMSDKLTKAFEGARNNPFQFKHIQLCHSLADVYKLPAGPKVVLAST 331
Query: 81 PDMECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLIE-LGGNRTLTLQVKKRIRLEG 139
PD+E GF+RDLF QW S+ NSII+T RTSPGTLA +L+E + + L V++R+ LEG
Sbjct: 332 PDLESGFTRDLFVQWASNANNSIILTTRTSPGTLAMELVENCAPGKQIELDVRRRVDLEG 391
Query: 140 EELEEYQKKK 149
ELEEY + +
Sbjct: 392 AELEEYLRTQ 401
Score = 87.8 bits (216), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 64/117 (54%), Gaps = 39/117 (33%)
Query: 160 EKIPPHDTSFINELQLSDFKQTLQRNGIDCEFMDGVLICCRGTVAVRRVVLVSTPDMECG 219
++IP H++ INEL+LSDFKQTL RN I+ EF GVL C GT+A+RRV
Sbjct: 679 DEIPIHNSVLINELKLSDFKQTLMRNNINSEFSGGVLWCSNGTLALRRV----------- 727
Query: 220 FSRDLFFQWCSSPENSIIITNRNRADDSDSNVIVLEGCLSDEYYRVQQLLYDQYAIL 276
D+ + +EGCLS+EYY++++LLY+QYAI+
Sbjct: 728 ----------------------------DAGKVAMEGCLSEEYYKIRELLYEQYAIV 756
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 207 RVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNR 241
+VVL STPD+E GF+RDLF QW S+ NSII+T R
Sbjct: 325 KVVLASTPDLESGFTRDLFVQWASNANNSIILTTR 359
>sp|O35218|CPSF2_MOUSE Cleavage and polyadenylation specificity factor subunit 2 OS=Mus
musculus GN=Cpsf2 PE=1 SV=1
Length = 782
Score = 161 bits (408), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 69/111 (62%), Positives = 91/111 (81%)
Query: 32 AKIEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECGFSRDL 91
+++EWMSDKLM+ FE RNNPF F+H+ LCH L++LA+VPSPKVVL S PD+ECGFSRDL
Sbjct: 282 SQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDL 341
Query: 92 FFQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLEGEEL 142
F QWC P+NSII+T RT+PGTLAR LI+ + ++++KR++LEG+EL
Sbjct: 342 FIQWCQDPKNSIILTYRTTPGTLARFLIDNPTEKVTEIELRKRVKLEGKEL 392
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 57/116 (49%), Gaps = 40/116 (34%)
Query: 161 KIPPHDTSFINELQLSDFKQTLQRNGIDCEFMDGVLICCRGTVAVRRVVLVSTPDMECGF 220
++P H + F+NE +LSDFKQ L R GI EF+ GVL+ C VAVRR
Sbjct: 707 EVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLV-CNNQVAVRR------------- 752
Query: 221 SRDLFFQWCSSPENSIIITNRNRADDSDSNVIVLEGCLSDEYYRVQQLLYDQYAIL 276
+++ I LEGCL ++YR++ LLY+QYAI+
Sbjct: 753 --------------------------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 29/36 (80%)
Query: 207 RVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNRN 242
+VVL S PD+ECGFSRDLF QWC P+NSII+T R
Sbjct: 324 KVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
>sp|Q9W799|CPSF2_XENLA Cleavage and polyadenylation specificity factor subunit 2
OS=Xenopus laevis GN=cpsf2 PE=1 SV=1
Length = 783
Score = 160 bits (405), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 91/111 (81%)
Query: 32 AKIEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECGFSRDL 91
+++EWMSDKLM+ FE RNNPF F+H+ LCH ++LA+VPSPKVVL S PD+ECGFSR+L
Sbjct: 282 SQVEWMSDKLMRCFEDKRNNPFQFRHLTLCHGYSDLARVPSPKVVLASQPDLECGFSREL 341
Query: 92 FFQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLEGEEL 142
F QWC P+NS+I+T RT+PGTLAR LI+ R + ++++KR++LEG+EL
Sbjct: 342 FIQWCQDPKNSVILTYRTTPGTLARFLIDHPSERIIDIELRKRVKLEGKEL 392
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 40/116 (34%)
Query: 161 KIPPHDTSFINELQLSDFKQTLQRNGIDCEFMDGVLICCRGTVAVRRVVLVSTPDMECGF 220
++P H + F+NE +LSDFKQ L R GI EF+ GVL+ C VAVRR
Sbjct: 708 EVPGHQSVFMNEPRLSDFKQVLLREGIHAEFVGGVLV-CNNMVAVRR------------- 753
Query: 221 SRDLFFQWCSSPENSIIITNRNRADDSDSNVIVLEGCLSDEYYRVQQLLYDQYAIL 276
+++ I LEGCL ++++++++LLY+QYAI+
Sbjct: 754 --------------------------TETGRIGLEGCLCEDFFKIRELLYEQYAIV 783
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 33/52 (63%), Gaps = 5/52 (9%)
Query: 196 LICCRGTVAVRRV-----VLVSTPDMECGFSRDLFFQWCSSPENSIIITNRN 242
L C G + RV VL S PD+ECGFSR+LF QWC P+NS+I+T R
Sbjct: 308 LTLCHGYSDLARVPSPKVVLASQPDLECGFSRELFIQWCQDPKNSVILTYRT 359
>sp|Q10568|CPSF2_BOVIN Cleavage and polyadenylation specificity factor subunit 2 OS=Bos
taurus GN=CPSF2 PE=1 SV=1
Length = 782
Score = 159 bits (401), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 67/108 (62%), Positives = 88/108 (81%)
Query: 32 AKIEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECGFSRDL 91
+++EWMSDKLM+ FE RNNPF F+H+ LCH L++LA+VPSPKVVL S PD+ECGFSRDL
Sbjct: 282 SQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDL 341
Query: 92 FFQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLEG 139
F QWC P+NSII+T RT+PGTLAR LI+ + ++++KR++LEG
Sbjct: 342 FIQWCQDPKNSIILTYRTTPGTLARFLIDNPSEKVTEIELRKRVKLEG 389
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 57/116 (49%), Gaps = 40/116 (34%)
Query: 161 KIPPHDTSFINELQLSDFKQTLQRNGIDCEFMDGVLICCRGTVAVRRVVLVSTPDMECGF 220
++P H + F+NE +LSDFKQ L R GI EF+ GVL+ C VAVRR
Sbjct: 707 EVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLV-CNNQVAVRR------------- 752
Query: 221 SRDLFFQWCSSPENSIIITNRNRADDSDSNVIVLEGCLSDEYYRVQQLLYDQYAIL 276
+++ I LEGCL ++YR++ LLY+QYAI+
Sbjct: 753 --------------------------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 29/36 (80%)
Query: 207 RVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNRN 242
+VVL S PD+ECGFSRDLF QWC P+NSII+T R
Sbjct: 324 KVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
>sp|Q9P2I0|CPSF2_HUMAN Cleavage and polyadenylation specificity factor subunit 2 OS=Homo
sapiens GN=CPSF2 PE=1 SV=2
Length = 782
Score = 158 bits (400), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 67/108 (62%), Positives = 88/108 (81%)
Query: 32 AKIEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECGFSRDL 91
+++EWMSDKLM+ FE RNNPF F+H+ LCH L++LA+VPSPKVVL S PD+ECGFSRDL
Sbjct: 282 SQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDL 341
Query: 92 FFQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLEG 139
F QWC P+NSII+T RT+PGTLAR LI+ + ++++KR++LEG
Sbjct: 342 FIQWCQDPKNSIILTYRTTPGTLARFLIDNPSEKITEIELRKRVKLEG 389
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 57/116 (49%), Gaps = 40/116 (34%)
Query: 161 KIPPHDTSFINELQLSDFKQTLQRNGIDCEFMDGVLICCRGTVAVRRVVLVSTPDMECGF 220
++P H + F+NE +LSDFKQ L R GI EF+ GVL+ C VAVRR
Sbjct: 707 EVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLV-CNNQVAVRR------------- 752
Query: 221 SRDLFFQWCSSPENSIIITNRNRADDSDSNVIVLEGCLSDEYYRVQQLLYDQYAIL 276
+++ I LEGCL ++YR++ LLY+QYAI+
Sbjct: 753 --------------------------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 29/36 (80%)
Query: 207 RVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNRN 242
+VVL S PD+ECGFSRDLF QWC P+NSII+T R
Sbjct: 324 KVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
>sp|O17403|CPSF2_CAEEL Probable cleavage and polyadenylation specificity factor subunit 2
OS=Caenorhabditis elegans GN=cpsf-2 PE=3 SV=1
Length = 843
Score = 125 bits (313), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 67/139 (48%), Positives = 88/139 (63%), Gaps = 13/139 (9%)
Query: 24 LCHSLAELAK--IEWMSDKLMK-SFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVST 80
+ S+ + AK +EWM++KL K AR NPF KHV LCHS EL +V SPKVVL S+
Sbjct: 271 VASSVVQFAKSQLEWMNEKLFKYDSSSARYNPFTLKHVTLCHSHQELMRVRSPKVVLCSS 330
Query: 81 PDMECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLIELG----------GNRTLTLQ 130
DME GFSR+LF WCS P N +I+T R + TLA L+ + +R ++L
Sbjct: 331 QDMESGFSRELFLDWCSDPRNGVILTARPASFTLAAKLVNMAERANDGVLKHEDRLISLV 390
Query: 131 VKKRIRLEGEELEEYQKKK 149
VKKR+ LEGEEL EY+++K
Sbjct: 391 VKKRVALEGEELLEYKRRK 409
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 39/122 (31%)
Query: 155 DKQEKEKIPPHDTSFINELQLSDFKQTLQRNGIDCEFMDGVLICCRGTVAVRRVVLVSTP 214
D K IP H F+N+ +LSDFK L G EF+ G L+ G ++RR
Sbjct: 761 DPLPKRLIPIHQAVFVNDPKLSDFKNLLTDKGYKAEFLSGTLLINGGNCSIRR------- 813
Query: 215 DMECGFSRDLFFQWCSSPENSIIITNRNRADDSDSNVIVLEGCLSDEYYRVQQLLYDQYA 274
+D+ V +EG + +YY++++L YDQ+A
Sbjct: 814 --------------------------------NDTGVFQMEGAFTKDYYKLRRLFYDQFA 841
Query: 275 IL 276
+L
Sbjct: 842 VL 843
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 26/35 (74%)
Query: 207 RVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNR 241
+VVL S+ DME GFSR+LF WCS P N +I+T R
Sbjct: 324 KVVLCSSQDMESGFSRELFLDWCSDPRNGVILTAR 358
>sp|A8XUS3|CPSF2_CAEBR Probable cleavage and polyadenylation specificity factor subunit 2
OS=Caenorhabditis briggsae GN=cpsf-2 PE=3 SV=2
Length = 842
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/139 (45%), Positives = 86/139 (61%), Gaps = 13/139 (9%)
Query: 24 LCHSLAELAK--IEWMSDKLMK-SFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVST 80
+ S+ + AK +EWM +KL + AR NPF K+V L HS EL K+ SPKVVL S+
Sbjct: 271 VASSVVQFAKSQLEWMDEKLFRYDSSSARYNPFTLKNVNLVHSHLELIKIRSPKVVLCSS 330
Query: 81 PDMECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLIELG----------GNRTLTLQ 130
DME GFSR+LF WC+ N +I+T R + TLA L+EL ++ L+L
Sbjct: 331 QDMETGFSRELFLDWCADQRNGVILTARPASFTLAARLVELAERANDGVLRNEDKHLSLL 390
Query: 131 VKKRIRLEGEELEEYQKKK 149
V+KR+ LEGEEL EY+++K
Sbjct: 391 VRKRVPLEGEELLEYKRRK 409
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 207 RVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNR 241
+VVL S+ DME GFSR+LF WC+ N +I+T R
Sbjct: 324 KVVLCSSQDMETGFSRELFLDWCADQRNGVILTAR 358
Score = 37.7 bits (86), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 159 KEKIPPHDTSFINELQLSDFKQTLQRNGIDCEFMDGVLICCRGTVAV 205
K++IP H F+N+ +LS+FK L G EF G L+ G ++
Sbjct: 764 KKQIPVHQAIFVNDPKLSEFKNLLVDKGYKAEFFSGTLLINGGKCSI 810
>sp|Q9LKF9|CPSF2_ARATH Cleavage and polyadenylation specificity factor subunit 2
OS=Arabidopsis thaliana GN=CPSF100 PE=1 SV=2
Length = 739
Score = 94.4 bits (233), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 72/119 (60%), Gaps = 1/119 (0%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVP-SPKVVLVSTPDMECGFSRDLF 92
+EWMSD + KSFE +R+N F +HV L + +L P PKVVL S +E GF+R++F
Sbjct: 281 LEWMSDSISKSFETSRDNAFLLRHVTLLINKTDLDNAPPGPKVVLASMASLEAGFAREIF 340
Query: 93 FQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLEGEELEEYQKKKDK 151
+W + P N ++ T GTLAR L + + + + KR+ L GEEL Y++++++
Sbjct: 341 VEWANDPRNLVLFTETGQFGTLARMLQSAPPPKFVKVTMSKRVPLAGEELIAYEEEQNR 399
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 29/113 (25%)
Query: 164 PHDTSFINELQLSDFKQTLQRNGIDCEFMDGVLICCRGTVAVRRVVLVSTPDMECGFSRD 223
PH + +L+++DFKQ L G+ EF G + C V +R+V P + G
Sbjct: 656 PHKPVLVGDLKIADFKQFLSSKGVQVEFAGGGALRCGEYVTLRKV----GPTGQKG---- 707
Query: 224 LFFQWCSSPENSIIITNRNRADDSDSNVIVLEGCLSDEYYRVQQLLYDQYAIL 276
S P+ I++EG L ++YY+++ LY Q+ +L
Sbjct: 708 ----GASGPQQ-----------------ILIEGPLCEDYYKIRDYLYSQFYLL 739
Score = 38.5 bits (88), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 207 RVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNRNR 243
+VVL S +E GF+R++F +W + P N ++ T +
Sbjct: 322 KVVLASMASLEAGFAREIFVEWANDPRNLVLFTETGQ 358
>sp|Q55BS1|CPSF2_DICDI Cleavage and polyadenylation specificity factor subunit 2
OS=Dictyostelium discoideum GN=cpsf2 PE=3 SV=1
Length = 784
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 80/132 (60%), Gaps = 6/132 (4%)
Query: 32 AKIEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVP-SPKVVLVSTPDMECGFSRD 90
+++E+MS FE NPF FKH+K+ SL EL ++P + KV+L S+ D+E GFSR+
Sbjct: 285 SQLEFMSSTASVKFEQNIENPFSFKHIKILSSLEELQELPDTNKVILTSSQDLETGFSRE 344
Query: 91 LFFQWCSSPENSIIITNRTSPGTLARDLIEL-----GGNRTLTLQVKKRIRLEGEELEEY 145
LF QWCS P+ I+ T + +LA LI+ G + + + R+ L G+EL +Y
Sbjct: 345 LFIQWCSDPKTLILFTQKIPKDSLADKLIKQYSTPNGRGKCIEIVQGSRVPLTGDELLQY 404
Query: 146 QKKKDKEAKDKQ 157
+ ++ K+ ++K+
Sbjct: 405 EMEQAKQREEKR 416
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 36/112 (32%)
Query: 165 HDTSFINELQLSDFKQTLQRNGIDCEFMDGVLICCRGTVAVRRVVLVSTPDMECGFSRDL 224
HD SFI +++LSD KQ L GI +F G+L C G V + R
Sbjct: 709 HDESFIGDIKLSDLKQVLVNAGIQVQFDQGIL-NCGGLVYIWR----------------- 750
Query: 225 FFQWCSSPENSIIITNRNRADDSDSNVIVLEGCLSDEYYRVQQLLYDQYAIL 276
D +++I ++G +SDEYY +++LLY Q+ I+
Sbjct: 751 ------------------DEDHGGNSIINVDGIISDEYYLIKELLYKQFQIV 784
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 207 RVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNR 241
+V+L S+ D+E GFSR+LF QWCS P+ I+ T +
Sbjct: 328 KVILTSSQDLETGFSRELFIQWCSDPKTLILFTQK 362
>sp|Q652P4|CPSF2_ORYSJ Cleavage and polyadenylation specificity factor subunit 2 OS=Oryza
sativa subsp. japonica GN=Os09g0569400 PE=2 SV=1
Length = 738
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 75/130 (57%), Gaps = 1/130 (0%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVP-SPKVVLVSTPDMECGFSRDLF 92
+EWM+D + KSFE R+N F K V + EL K+ +PKVVL S +E GFS D+F
Sbjct: 280 LEWMNDSISKSFEHTRDNAFLLKCVTQIINKDELEKLGDAPKVVLASMASLEVGFSHDIF 339
Query: 93 FQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLEGEELEEYQKKKDKE 152
+ +N ++ T + GTLAR L + + + + KRI L G+EL+ Y++++++
Sbjct: 340 VDMANEAKNLVLFTEKGQFGTLARMLQVDPPPKAVKVTMSKRIPLVGDELKAYEEEQERI 399
Query: 153 AKDKQEKEKI 162
K++ K +
Sbjct: 400 KKEEALKASL 409
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 37/121 (30%)
Query: 162 IPP------HDTSFINELQLSDFKQTLQRNGIDCEFMDGVLICCRGTVAVRRVVLVSTPD 215
+PP H + + +L+L+DFKQ L G+ EF G L C + +R+
Sbjct: 649 LPPSSTPAAHKSVLVGDLKLADFKQFLANKGLQVEFAGGALRCGE-YITLRK-------- 699
Query: 216 MECGFSRDLFFQWCSSPENSIIITNRNRADDSDSNVIVLEGCLSDEYYRVQQLLYDQYAI 275
I + + + S IV+EG L ++YY++++LLY Q+ +
Sbjct: 700 ----------------------IGDAGQKGSTGSQQIVIEGPLCEDYYKIRELLYSQFYL 737
Query: 276 L 276
L
Sbjct: 738 L 738
>sp|Q74ZC0|YSH1_ASHGO Endoribonuclease YSH1 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=YSH1 PE=3 SV=2
Length = 771
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECGFSRDLFF 93
+ M+DK+ K F ++ NPF FK++ +L E P V+L S ++ G SRDL
Sbjct: 295 VNMMNDKIRKKFRDSQTNPFIFKNISYLKNLDEFQDF-GPSVMLASPGMLQNGLSRDLLE 353
Query: 94 QWCSSPENSIIITNRTSPGTLARDLI 119
+WC +N ++IT + GT+A+ L+
Sbjct: 354 KWCPDEKNLVLITGYSVEGTMAKFLM 379
>sp|O74740|CFT2_SCHPO Cleavage factor two protein 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cft2 PE=1 SV=1
Length = 797
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 24/145 (16%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKV-PSPKVVLVSTPDMECGFSRDLF 92
IEWM D +++ F G N F+++ ++++ + P PKV+L + +ECGFS+ +
Sbjct: 275 IEWMGDNIVRDF-GINENLLEFRNINTITDFSQISHIGPGPKVILATALTLECGFSQRIL 333
Query: 93 FQWCSSPENSIII---TNRTSPGTLARDLIE---------------LGGNRTLTLQVKKR 134
S N +I+ +R +LA I +G +++K +
Sbjct: 334 LDLMSENSNDLILFTQRSRCPQNSLANQFIRYWERASKKKRDIPHPVGLYAEQAVKIKTK 393
Query: 135 IRLEGEELEEYQK----KKDKEAKD 155
LEGEEL YQ+ K++K+A+D
Sbjct: 394 EPLEGEELRSYQELEFSKRNKDAED 418
>sp|Q6FUA5|YSH1_CANGA Endoribonuclease YSH1 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=YSH1 PE=3
SV=1
Length = 771
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECGFSRDLFF 93
+ M+D + K F ++ NPF FK++ +L E P V+L S ++ G SRDL
Sbjct: 293 VNMMNDNIRKKFRDSQTNPFIFKNIAYIKNLDEFQDF-GPSVMLASPGMLQNGLSRDLLE 351
Query: 94 QWCSSPENSIIITNRTSPGTLARDLI 119
+WC +N ++IT + GT+A+ L+
Sbjct: 352 RWCPDEKNLVLITGYSVEGTMAKYLL 377
>sp|Q9C952|CPSF3_ARATH Cleavage and polyadenylation specificity factor subunit 3-I
OS=Arabidopsis thaliana GN=CPSF73-I PE=1 SV=1
Length = 693
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 37 MSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECGFSRDLFFQWC 96
M+D++ F A +NPF FKH+ +S+ + V P VV+ + ++ G SR LF WC
Sbjct: 299 MNDRIRNQF--ANSNPFVFKHISPLNSIDDFNDV-GPSVVMATPGGLQSGLSRQLFDSWC 355
Query: 97 SSPENSIIITNRTSPGTLARDLI 119
S +N+ II GTLA+ +I
Sbjct: 356 SDKKNACIIPGYMVEGTLAKTII 378
>sp|P79101|CPSF3_BOVIN Cleavage and polyadenylation specificity factor subunit 3 OS=Bos
taurus GN=CPSF3 PE=2 SV=1
Length = 684
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECGFSRDLFF 93
+ M+DK+ K NNPF FKH+ S+ + P VV+ S M+ G SR+LF
Sbjct: 286 VNAMNDKIRKQIN--INNPFVFKHISNLKSMDHFDDI-GPSVVMASPGMMQSGLSRELFE 342
Query: 94 QWCSSPENSIIITNRTSPGTLARDLI 119
WC+ N +II GTLA+ ++
Sbjct: 343 SWCTDKRNGVIIAGYCVEGTLAKHIM 368
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 208 VVLVSTPDMECGFSRDLFFQWCSSPENSIIITN 240
VV+ S M+ G SR+LF WC+ N +II
Sbjct: 324 VVMASPGMMQSGLSRELFESWCTDKRNGVIIAG 356
>sp|Q9UKF6|CPSF3_HUMAN Cleavage and polyadenylation specificity factor subunit 3 OS=Homo
sapiens GN=CPSF3 PE=1 SV=1
Length = 684
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECGFSRDLFF 93
+ M+DK+ K NNPF FKH+ S+ + P VV+ S M+ G SR+LF
Sbjct: 286 VNAMNDKIRKQIN--INNPFVFKHISNLKSMDHFDDI-GPSVVMASPGMMQSGLSRELFE 342
Query: 94 QWCSSPENSIIITNRTSPGTLARDLI 119
WC+ N +II GTLA+ ++
Sbjct: 343 SWCTDKRNGVIIAGYCVEGTLAKHIM 368
Score = 35.0 bits (79), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 208 VVLVSTPDMECGFSRDLFFQWCSSPENSIIITN 240
VV+ S M+ G SR+LF WC+ N +II
Sbjct: 324 VVMASPGMMQSGLSRELFESWCTDKRNGVIIAG 356
>sp|Q6C2Z7|YSH1_YARLI Endoribonuclease YSH1 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=YSH1 PE=3 SV=2
Length = 827
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECGFSRDLFF 93
I M+D + + F + NPF FK++K +L + P V++ S ++ G SR L
Sbjct: 312 INMMNDNIRRRFRDQKTNPFRFKYIKNIKNLDRFDDM-GPCVMVASPGMLQSGVSRSLLE 370
Query: 94 QWCSSPENSIIITNRTSPGTLARDLI----ELGGNRTLTLQVKKRIRLE 138
+W P+N++I+T + GT+A+ +I E+ + L+V +R+ +E
Sbjct: 371 RWAPDPKNTLILTGYSVEGTMAKQIINEPNEIPSAQNPDLKVPRRLAVE 419
>sp|Q6CUI5|YSH1_KLULA Endoribonuclease YSH1 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=YSH1 PE=3 SV=1
Length = 764
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECGFSRDLFF 93
+ M+D + K F+ ++ NPF FK++ +L E P V+L S ++ G SRD+
Sbjct: 298 VNMMNDDIRKKFKDSQTNPFIFKNISYLKNLDEFEDF-GPSVMLASPGMLQNGLSRDILE 356
Query: 94 QWCSSPENSIIITNRTSPGTLARDLI 119
+WC +N +++T + GT+A+ L+
Sbjct: 357 KWCPEEKNLVLVTGYSVEGTMAKYLL 382
>sp|Q06224|YSH1_YEAST Endoribonuclease YSH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YSH1 PE=1 SV=1
Length = 779
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECGFSRDLFF 93
+ M+D + K F ++ NPF FK++ +L + P V+L S ++ G SRDL
Sbjct: 294 VNMMNDDIRKKFRDSQTNPFIFKNISYLRNLEDFQDF-GPSVMLASPGMLQSGLSRDLLE 352
Query: 94 QWCSSPENSIIITNRTSPGTLAR 116
+WC +N ++IT + GT+A+
Sbjct: 353 RWCPEDKNLVLITGYSIEGTMAK 375
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 209 VLVSTPDM-ECGFSRDLFFQWCSSPENSIIIT 239
V++++P M + G SRDL +WC +N ++IT
Sbjct: 334 VMLASPGMLQSGLSRDLLERWCPEDKNLVLIT 365
>sp|Q9QXK7|CPSF3_MOUSE Cleavage and polyadenylation specificity factor subunit 3 OS=Mus
musculus GN=Cpsf3 PE=1 SV=2
Length = 684
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECGFSRDLFF 93
+ M+DK+ K NNPF FKH+ S+ + P VV+ S ++ G SR+LF
Sbjct: 286 VNAMNDKIRKQIN--INNPFVFKHISNLKSMDHFDDI-GPSVVMASPGMIQNGLSRELFE 342
Query: 94 QWCSSPENSIIITNRTSPGTLARDLI 119
WC+ N +II GTLA+ ++
Sbjct: 343 SWCTDKRNGVIIAGYCVEGTLAKHIM 368
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 208 VVLVSTPDMECGFSRDLFFQWCSSPENSIIITN 240
VV+ S ++ G SR+LF WC+ N +II
Sbjct: 324 VVMASPGMIQNGLSRELFESWCTDKRNGVIIAG 356
>sp|Q86A79|CPSF3_DICDI Cleavage and polyadenylation specificity factor subunit 3
OS=Dictyostelium discoideum GN=cpsf3 PE=3 SV=1
Length = 774
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECGFSRDLFF 93
I M+D++ F+ + NPF FKH+K + P V + S ++ G SR LF
Sbjct: 313 INMMNDRVRAQFDVS--NPFEFKHIKNIKGIESFDD-RGPCVFMASPGMLQSGLSRQLFE 369
Query: 94 QWCSSPENSIIITNRTSPGTLARDLI 119
+WCS N I+I + GTLA+ ++
Sbjct: 370 RWCSDKRNGIVIPGYSVEGTLAKHIM 395
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 209 VLVSTPDM-ECGFSRDLFFQWCSSPENSIII 238
V +++P M + G SR LF +WCS N I+I
Sbjct: 351 VFMASPGMLQSGLSRQLFERWCSDKRNGIVI 381
>sp|P0CM88|YSH1_CRYNJ Endoribonuclease YSH1 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=YSH1 PE=3
SV=1
Length = 773
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 49 RNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNR 108
R+NPF F+ VK +L + P V++ S M G SRDL +W +N +I+T
Sbjct: 323 RDNPFDFRFVKWLKDPQKLRENKGPCVIMSSPQFMSFGLSRDLLEEWAPDSKNGVIVTGY 382
Query: 109 TSPGTLARDLIE--------LGGNRTLTLQVKK 133
+ GT+AR L+ GGN L VK+
Sbjct: 383 SIEGTMARTLLSEPDHIESLKGGNVPRRLTVKE 415
>sp|P0CM89|YSH1_CRYNB Endoribonuclease YSH1 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=YSH1 PE=3 SV=1
Length = 773
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 49 RNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNR 108
R+NPF F+ VK +L + P V++ S M G SRDL +W +N +I+T
Sbjct: 323 RDNPFDFRFVKWLKDPQKLRENKGPCVIMSSPQFMSFGLSRDLLEEWAPDSKNGVIVTGY 382
Query: 109 TSPGTLARDLIE--------LGGNRTLTLQVKK 133
+ GT+AR L+ GGN L VK+
Sbjct: 383 SIEGTMARTLLSEPDHIESLKGGNVPRRLTVKE 415
>sp|Q59P50|YSH1_CANAL Endoribonuclease YSH1 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=YSH1 PE=3 SV=1
Length = 870
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query: 37 MSDKL-MKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDM-ECGFSRDLFFQ 94
M+DK+ + S ++NPF FK++K L++ + P VV V+TP M + G SR L +
Sbjct: 387 MNDKIRLSSASSEKSNPFDFKYIKSIKDLSKFQDM-GPSVV-VATPGMLQAGVSRQLLEK 444
Query: 95 WCSSPENSIIITNRTSPGTLARDLIE 120
W +N +I+T + GT+A++L++
Sbjct: 445 WAPDGKNLVILTGYSVEGTMAKELLK 470
>sp|Q6BMW3|YSH1_DEBHA Endoribonuclease YSH1 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=YSH1 PE=3
SV=2
Length = 815
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 49 RNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNR 108
+ NPF FK +K +L + P VV+ S ++ G SR+L +W P+N++I+T
Sbjct: 323 KQNPFQFKFIKSIKNLDKFQDF-GPCVVVASPGMLQNGVSRELLERWAPDPKNAVIMTGY 381
Query: 109 TSPGTLARDLI 119
+ GT+A+DL+
Sbjct: 382 SVEGTMAKDLL 392
>sp|O13794|YSH1_SCHPO Endoribonuclease ysh1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ysh1 PE=3 SV=2
Length = 757
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECGFSRDLFF 93
+ M+D + K F A NPF F+ VK +L + + P V+L S ++ G SR L
Sbjct: 293 VNMMNDNIRKIF--AERNPFIFRFVKSLRNLEKFDDI-GPSVILASPGMLQNGVSRTLLE 349
Query: 94 QWCSSPENSIIITNRTSPGTLARDL 118
+W P N++++T + GT+A+ +
Sbjct: 350 RWAPDPRNTLLLTGYSVEGTMAKQI 374
>sp|Q4PEJ3|YSH1_USTMA Endoribonuclease YSH1 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=YSH1 PE=3 SV=1
Length = 880
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECGFSRDLFF 93
I M+D + F R+NPF FKH+ SL + P V++ S M+ G SR+L
Sbjct: 302 IHTMNDHIRTRF-NRRDNPFVFKHISNLRSLEKFEDR-GPCVMMASPGFMQSGVSRELLE 359
Query: 94 QWCSSPENSIIITNRTSPGTLARDLI 119
+W N +I++ + GT+AR+++
Sbjct: 360 RWAPDKRNGLIVSGYSVEGTMARNIL 385
>sp|Q2YDM2|INT11_BOVIN Integrator complex subunit 11 OS=Bos taurus GN=CPSF3L PE=2 SV=2
Length = 599
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECGFSRDLFF 93
I W + K+ K+F + N F FKH+K A P P VV + + G S +F
Sbjct: 283 IPWTNQKIRKTF--VQRNMFEFKHIKAFDR--AFADSPGPMVVFATPGMLHAGQSLQIFR 338
Query: 94 QWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLE 138
+W + +N +I+ GT+ + L G R L ++ ++ + ++
Sbjct: 339 KWAGNEKNMVIMPGYCVQGTVGHKI--LSGQRKLEMEGRQVLEVK 381
>sp|Q3MHC2|INT11_RAT Integrator complex subunit 11 OS=Rattus norvegicus GN=Cpsf3l PE=2
SV=1
Length = 600
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECGFSRDLFF 93
I W + K+ K+F + N F FKH+K A P P VV + + G S +F
Sbjct: 283 ITWTNQKIRKTF--VQRNMFEFKHIKAFDR--TFADNPGPMVVFATPGMLHAGQSLQIFR 338
Query: 94 QWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLE 138
+W + +N +I+ GT+ + L G R L ++ ++ + ++
Sbjct: 339 KWAGNEKNMVIMPGYCVQGTVGHKI--LSGQRKLEMEGRQMLEVK 381
>sp|Q9CWS4|INT11_MOUSE Integrator complex subunit 11 OS=Mus musculus GN=Cpsf3l PE=2 SV=1
Length = 600
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECGFSRDLFF 93
I W + K+ K+F + N F FKH+K A P P VV + + G S +F
Sbjct: 283 ITWTNQKIRKTF--VQRNMFEFKHIKAFDR--TFADNPGPMVVFATPGMLHAGQSLQIFR 338
Query: 94 QWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLE 138
+W + +N +I+ GT+ + L G R L ++ ++ + ++
Sbjct: 339 KWAGNEKNMVIMPGYCVQGTVGHKI--LSGQRKLEMEGRQMLEVK 381
>sp|Q5ZIH0|INT11_CHICK Integrator complex subunit 11 OS=Gallus gallus GN=CPSF3L PE=2 SV=1
Length = 600
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECGFSRDLFF 93
I W + K+ K+F + N F FKH+K A P P VV + + G S +F
Sbjct: 283 ITWTNQKIRKTF--VQRNMFEFKHIKAFDR--AFADNPGPMVVFATPGMLHAGQSLQIFR 338
Query: 94 QWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKK 133
+W + +N +I+ GT+ + L G R L ++ ++
Sbjct: 339 KWAGNEKNMVIMPGYCVQGTVGHKI--LSGQRKLEMEGRQ 376
>sp|Q5TA45|INT11_HUMAN Integrator complex subunit 11 OS=Homo sapiens GN=CPSF3L PE=1 SV=2
Length = 600
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECGFSRDLFF 93
I W + K+ K+F + N F FKH+K A P P VV + + G S +F
Sbjct: 283 IPWTNQKIRKTF--VQRNMFEFKHIKAFDR--AFADNPGPMVVFATPGMLHAGQSLQIFR 338
Query: 94 QWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLE 138
+W + +N +I+ GT+ + L G R L ++ ++ + ++
Sbjct: 339 KWAGNEKNMVIMPGYCVQGTVGHKI--LSGQRKLEMEGRQVLEVK 381
>sp|Q5NVE6|INT11_PONAB Integrator complex subunit 11 OS=Pongo abelii GN=CPSF3L PE=2 SV=2
Length = 600
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECGFSRDLFF 93
I W + K+ K+F + N F FKH+K A P P VV + + G S +F
Sbjct: 283 IPWTNQKIRKTF--VQRNMFEFKHIKAFDR--AFADNPGPMVVFATPGMLHAGQSLQIFR 338
Query: 94 QWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLE 138
+W + +N +I+ GT+ + L G R L ++ ++ + ++
Sbjct: 339 KWAGNEKNMVIMPGYCVQGTVGHKI--LSGQRKLEMEGRQVLEVK 381
>sp|Q8GUU3|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II
OS=Arabidopsis thaliana GN=CPSF73-II PE=1 SV=2
Length = 613
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMEC-GFSRDLF 92
I W S + + +NPF FK+VK L P P VL +TP M C GFS ++F
Sbjct: 282 ISWTSQNVKEKHN--THNPFDFKNVKDFDR--SLIHAPGP-CVLFATPGMLCAGFSLEVF 336
Query: 93 FQWCSSPENSIIITNRTSPGTLARDLI 119
W SP N + + + GT+ L+
Sbjct: 337 KHWAPSPLNLVALPGYSVAGTVGHKLM 363
>sp|Q503E1|INT11_DANRE Integrator complex subunit 11 OS=Danio rerio GN=cpsf3l PE=2 SV=1
Length = 598
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECGFSRDLFF 93
I W + K+ K+F + N F FKH+K A P P VV + + G S +F
Sbjct: 283 ITWTNQKIRKTF--VQRNMFEFKHIKAFDR--SYADNPGPMVVFATPGMLHAGQSLQIFK 338
Query: 94 QWCSSPENSIIITNRTSPGTLARDL------IELGGNRTLTLQVK 132
+W + +N +I+ GT+ + +E+ G TL ++++
Sbjct: 339 KWAGNEKNMVIMPGYCVQGTVGHKILNGQKKLEMEGRATLDVKLQ 383
>sp|Q4IPN9|YSH1_GIBZE Endoribonuclease YSH1 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=YSH1 PE=3 SV=2
Length = 833
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 44 SFEGA-RNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDM-ECGFSRDLFFQWCSSPEN 101
S +GA + P+ FK+++ +L V V++++P M + G SR+L +W S +N
Sbjct: 324 SGDGAGKGGPWDFKYIRSLKNLDRFDDVGG--CVMLASPGMLQNGVSRELLERWAPSEKN 381
Query: 102 SIIITNRTSPGTLARDLIE 120
+IIT + GT+A+ +++
Sbjct: 382 GVIITGYSVEGTMAKQIMQ 400
>sp|Q8WZS6|YSH1_NEUCR Endoribonuclease ysh-1 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ysh-1
PE=3 SV=1
Length = 850
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 44 SFEGA-RNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDM-ECGFSRDLFFQWCSSPEN 101
S +GA + P+ F+ ++ SL V V++++P M + G SR+L +W S +N
Sbjct: 323 SGDGAGKGGPWDFRFIRSLKSLDRFEDVGG--CVMLASPGMLQNGVSRELLERWAPSEKN 380
Query: 102 SIIITNRTSPGTLARDLIE 120
+IIT + GT+A+ L++
Sbjct: 381 GVIITGYSVEGTMAKQLLQ 399
>sp|Q54YL3|INT11_DICDI Integrator complex subunit 11 homolog OS=Dictyostelium discoideum
GN=ints11 PE=3 SV=1
Length = 744
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDM-ECGFSRDLF 92
I W + K+ ++F + N F FKH+K S L P +VL +TP M G S ++F
Sbjct: 283 INWTNQKIKQTF--VKRNMFDFKHIKPFQS--HLVDAPGA-MVLFATPGMLHAGASLEVF 337
Query: 93 FQWCSSPENSIIITNRTSPGTLARDLIELG 122
+W + N II GT+ L+ G
Sbjct: 338 KKWAPNELNMTIIPGYCVVGTVGNKLLTTG 367
>sp|Q5BEP0|YSH1_EMENI Endoribonuclease ysh1 OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=ysh1 PE=3 SV=1
Length = 884
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 31 LAKIEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDM-ECGFSR 89
+A+ E DK + + P+ FK+V+ SL V V++++P M + G SR
Sbjct: 318 MAEAEASGDKSVSA------GPWDFKYVRSLRSLERFDDVGG--CVMLASPGMLQTGTSR 369
Query: 90 DLFFQWCSSPENSIIITNRTSPGTLARDLI 119
+L +W + N +++T + GT+A+ L+
Sbjct: 370 ELLERWAPNERNGVVMTGYSVEGTMAKQLL 399
>sp|Q4WRC2|YSH1_ASPFU Endoribonuclease ysh1 OS=Neosartorya fumigata (strain ATCC MYA-4609
/ Af293 / CBS 101355 / FGSC A1100) GN=ysh1 PE=3 SV=1
Length = 872
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 31 LAKIEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDM-ECGFSR 89
+A+ E DK A P+ FK V+ SL V V++++P M + G SR
Sbjct: 319 MAEAEASGDK------SASAGPWDFKFVRSLRSLERFDDVGG--CVMLASPGMLQTGTSR 370
Query: 90 DLFFQWCSSPENSIIITNRTSPGTLARDLI 119
+L +W + N +++T + GT+A+ L+
Sbjct: 371 ELLERWAPNERNGVVMTGYSVEGTMAKQLL 400
>sp|Q57626|Y162_METJA Uncharacterized protein MJ0162 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0162 PE=3 SV=1
Length = 421
Score = 35.4 bits (80), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 24 LCHSLA-ELAKIEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPD 82
L H+ A ++ I W++ K+ E R NPF +K K P ++VST
Sbjct: 249 LIHATAVYMSYINWLNPKIKNMVEN-RINPF--GEIKKADESLVFNKEPC---IIVSTSG 302
Query: 83 MECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLIE 120
M G + + P+N +I+T + GTL R+L E
Sbjct: 303 MVQGGPVLKYLKLLKDPKNKLILTGYQAEGTLGRELEE 340
>sp|O67798|HTPX_AQUAE Protease HtpX homolog OS=Aquifex aeolicus (strain VF5) GN=htpX PE=3
SV=1
Length = 302
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 36 WMSDKLMKSFEGARNNPFH---FKHVKLCHSLAELAKVPSPKVVLV 78
W SDK++ S GAR P+ + H ++ LA A +P PK+ LV
Sbjct: 57 WFSDKIVLSMYGAREIPYEEAPWLH-QIVEELARRANMPKPKIYLV 101
>sp|Q0BWV3|HTPX_HYPNA Protease HtpX homolog OS=Hyphomonas neptunium (strain ATCC 15444)
GN=htpX PE=3 SV=1
Length = 297
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 22/115 (19%)
Query: 36 WMSDKLMKSFEGAR------NNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECGFSR 89
W SDK++ +GA+ NP + LAE A +P+P++ ++ TP
Sbjct: 46 WNSDKMVLRMQGAQEVLPDTKNPMLRAFGEDVARLAENAGLPAPRIYIIDTPQPNA---- 101
Query: 90 DLFFQWCSSPENSII--------ITNRTS-PGTLARDLIELGGNRTLTLQVKKRI 135
F +P+N+ + + NR G +A +L + TLT+ V +
Sbjct: 102 ---FATGRNPQNAAVAATTGLLNMLNREEVAGVMAHELAHVQNRDTLTMTVTATL 153
>sp|Q9H3P7|GCP60_HUMAN Golgi resident protein GCP60 OS=Homo sapiens GN=ACBD3 PE=1 SV=4
Length = 528
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 18/75 (24%)
Query: 174 QLSDFKQTLQRNGIDCEFMDGVLICCRGTVAVRRVVL----------VSTPDMECGFSRD 223
Q+ DFK+ +Q++ D V+ RG V RV +T + + GF
Sbjct: 379 QIKDFKEKIQQDA------DSVITVGRGEVVTVRVPTHEEGSYLFWEFATDNYDIGFG-- 430
Query: 224 LFFQWCSSPENSIII 238
++F+W SP ++ +
Sbjct: 431 VYFEWTDSPNTAVSV 445
>sp|A7IBA0|HTPX_XANP2 Protease HtpX homolog OS=Xanthobacter autotrophicus (strain ATCC
BAA-1158 / Py2) GN=htpX PE=3 SV=1
Length = 317
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 18/111 (16%)
Query: 36 WMSDKLMKSFEGAR--NNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECGFSRDLFF 93
W SDK++ GAR + V++ H LA A +P P+V ++ P F
Sbjct: 46 WNSDKMVLRMYGAREVDETTAPDFVRMVHELARRADLPPPRVFIMDNPQPNA-------F 98
Query: 94 QWCSSPENSII-----ITNRTSP----GTLARDLIELGGNRTLTLQVKKRI 135
+P+N+ + + SP G +A +L + TLT+ + I
Sbjct: 99 ATGRNPQNAAVAATTGLLQSLSPEEVAGVMAHELAHIKHYDTLTMTMTATI 149
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,370,263
Number of Sequences: 539616
Number of extensions: 4306895
Number of successful extensions: 20674
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 20226
Number of HSP's gapped (non-prelim): 444
length of query: 276
length of database: 191,569,459
effective HSP length: 116
effective length of query: 160
effective length of database: 128,974,003
effective search space: 20635840480
effective search space used: 20635840480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)