Query psy13345
Match_columns 276
No_of_seqs 289 out of 1248
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 17:04:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13345.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13345hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iek_A Ribonuclease TTHA0252; 100.0 5.1E-39 1.7E-43 309.4 19.9 187 3-204 230-428 (431)
2 2i7t_A Cleavage and polyadenyl 100.0 6.1E-33 2.1E-37 267.9 12.3 195 4-206 252-455 (459)
3 2xr1_A Cleavage and polyadenyl 100.0 1.4E-29 4.9E-34 254.7 12.0 193 3-204 426-636 (640)
4 3af5_A Putative uncharacterize 100.0 7.5E-29 2.6E-33 249.8 17.1 193 3-205 438-648 (651)
5 2ycb_A Beta-CAsp RNAse, cleava 100.0 2.6E-28 8.9E-33 245.2 15.5 194 3-205 423-633 (636)
6 2i7x_A Protein CFT2; polyadeny 99.8 1.9E-19 6.6E-24 183.2 11.2 138 6-148 262-428 (717)
7 3bk2_A RNAse J, metal dependen 99.3 4.6E-12 1.6E-16 125.5 8.2 118 63-188 296-424 (562)
8 3zq4_A Ribonuclease J 1, RNAse 99.1 1.7E-10 5.8E-15 114.2 7.8 126 53-188 272-409 (555)
9 3iek_A Ribonuclease TTHA0252; 98.8 1.4E-09 4.9E-14 104.1 2.8 50 203-252 303-352 (431)
10 2i7t_A Cleavage and polyadenyl 98.4 8.4E-08 2.9E-12 92.1 2.5 50 203-252 319-368 (459)
11 2az4_A Hypothetical protein EF 98.1 1.3E-06 4.5E-11 82.7 4.5 89 61-172 315-406 (429)
12 2xr1_A Cleavage and polyadenyl 97.8 7.2E-06 2.5E-10 82.3 3.1 48 204-251 502-549 (640)
13 3af5_A Putative uncharacterize 97.8 7.9E-06 2.7E-10 82.1 3.2 48 204-251 513-560 (651)
14 2ycb_A Beta-CAsp RNAse, cleava 97.7 1.3E-05 4.5E-10 80.3 2.9 47 204-250 498-544 (636)
15 2i7x_A Protein CFT2; polyadeny 97.5 1.8E-05 6.3E-10 80.4 1.2 47 204-253 335-382 (717)
16 3bk2_A RNAse J, metal dependen 87.9 1 3.5E-05 44.1 7.3 41 206-249 307-355 (562)
17 3zdk_A 5' exonuclease apollo; 85.4 0.23 8E-06 45.6 1.1 32 142-173 271-303 (336)
18 4b87_A DNA cross-LINK repair 1 81.2 0.81 2.8E-05 42.5 2.9 43 144-186 317-366 (367)
19 3zq4_A Ribonuclease J 1, RNAse 80.3 4.2 0.00014 39.7 7.8 98 145-248 231-339 (555)
20 3keo_A Redox-sensing transcrip 57.1 14 0.00049 31.5 5.2 110 97-211 81-198 (212)
21 1g2y_A Hepatocyte nuclear fact 34.3 9.7 0.00033 22.9 0.3 15 216-230 17-31 (32)
22 3kl7_A Putative metal-dependen 27.3 23 0.00078 30.0 1.6 44 146-189 185-229 (235)
23 2kv5_A FST, putative uncharact 25.1 44 0.0015 20.2 2.1 17 86-102 15-31 (33)
No 1
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Probab=100.00 E-value=5.1e-39 Score=309.36 Aligned_cols=187 Identities=14% Similarity=0.206 Sum_probs=157.9
Q ss_pred hHHHHHHHhcCCCCCccchhh----hhhhhHHhhc--ccccCHHHHHHHHhccCCCCCCCCceecCCHHH---HhcCCCC
Q psy13345 3 DKLMKSFEGARNNPFHFKHVK----LCHSLAELAK--IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAE---LAKVPSP 73 (276)
Q Consensus 3 ~~L~~l~~~~k~~~i~~~Pi~----~s~~t~~~ak--~ewms~~i~~~~~~~~~nPF~f~~l~~v~s~ee---l~~~~~P 73 (276)
|+|..+.+.++. ++++||| ++..++.+++ +|||++++++.+. .+.|||.|++++++++.++ +++.++|
T Consensus 230 ell~~l~~~~~~--~~~~pi~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~pf~~~~~~~~~~~~~~~~~~~~~~p 306 (431)
T 3iek_A 230 EILYVLYTHGHR--LPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFL-QGKNPFRPAGLEVVEHTEASKALNRAPGP 306 (431)
T ss_dssp HHHHHHHHHGGG--SCCCCEEEECHHHHHHHHHGGGGGGGSCHHHHHHHH-TTSCTTCCTTEEECCSHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHh--ccCCCEEEeChHHHHHHHHHHHhHHHHHHHHHHHHh-cCCCCCCCCCeEEeCCHHHHHHHhcCCCC
Confidence 444444444433 4456655 4456777777 9999999999886 6789999999999999876 6777899
Q ss_pred eEEEEeCCCCCcchHHHHHHHhCCCCCCeEEEecCCCCCChhHHHHhccCCceEEEeeceEEeeeh--hhhhhhhhhcCc
Q psy13345 74 KVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLEG--EELEEYQKKKDK 151 (276)
Q Consensus 74 ~VIiassgml~~G~s~~~l~~~~~d~~N~Iiltgy~~~gTlgr~L~~~~~~~~i~i~~~~~~~l~~--~el~~fsaHad~ 151 (276)
||||||||||++|+|++||++|++||+|+|||||||++||+||+|+++ .++|+| .++.+++++ +.+.+||||||+
T Consensus 307 ~viia~~gm~~~G~~~~~l~~~~~~~~n~ii~~gyq~~gt~g~~l~~~--~~~v~~-~g~~~~v~a~v~~~~~~saHad~ 383 (431)
T 3iek_A 307 MVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIAR--PPAVRI-LGEEVPLRASVHTLGGFSGHAGQ 383 (431)
T ss_dssp EEEEESCTTSSSSHHHHHHHHHTTCTTCEEEECSCCCTTSHHHHHHTC--CSEEEE-TTEEEECCSEEEECGGGCSSCCH
T ss_pred eEEEecCCCCCCChHHHHHHHhcCCCCCeEEEECCCCCCChHHHhhcC--CcEEEE-CCEEEEEEEEEEEECCccccCCH
Confidence 999999999999999999999999999999999999999999999987 567999 689999999 566789999999
Q ss_pred hhhHHHHhhcCCCcceEEeCh-hhHHHHHHHHHHcCCCcccccceeeecCceec
Q psy13345 152 EAKDKQEKEKIPPHDTSFINE-LQLSDFKQTLQRNGIDCEFMDGVLICCRGTVA 204 (276)
Q Consensus 152 ~~l~~~i~~~~p~~v~lvHGE-~~~~~Lk~~L~~~G~~aef~gg~l~~p~~~~~ 204 (276)
+||++|++..+ +++||||| .++..|++.|.+++. .+++|.+.++
T Consensus 384 ~~l~~~~~~~~--~v~lvHge~~~~~~l~~~l~~~~~-------~~~~p~~~~~ 428 (431)
T 3iek_A 384 DELLDWLQGEP--RVVLVHGEEEKLLALGKLLALRGQ-------EVSLARFGEG 428 (431)
T ss_dssp HHHHHHHTTCS--EEEEESSCHHHHHHHHHHHHHTTC-------EEEECCTTCC
T ss_pred HHHHHHHHhCC--eEEEECCCHHHHHHHHHHHHHhCC-------cEEECCCCCE
Confidence 99999999764 89999999 899999999998852 5566666444
No 2
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A
Probab=99.98 E-value=6.1e-33 Score=267.94 Aligned_cols=195 Identities=25% Similarity=0.366 Sum_probs=134.9
Q ss_pred HHHHHHHhcCCCCCccchhh----hhhhhHHhhc--ccccCHHHHHHHHhccCCCCCCCCceecCCHHHHhcCCCCeEEE
Q psy13345 4 KLMKSFEGARNNPFHFKHVK----LCHSLAELAK--IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVL 77 (276)
Q Consensus 4 ~L~~l~~~~k~~~i~~~Pi~----~s~~t~~~ak--~ewms~~i~~~~~~~~~nPF~f~~l~~v~s~eel~~~~~P~VIi 77 (276)
.|+.+|+++. .++++||| ++..++.+++ .+||++++++.+. ..|||.|++++.+.+.+++. ..+|||||
T Consensus 252 ~l~~~~~~~~--~~~~~pi~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~-~~~~~vii 326 (459)
T 2i7t_A 252 ILDEYWQNHP--ELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQIN--INNPFVFKHISNLKSMDHFD-DIGPSVVM 326 (459)
T ss_dssp HHHHHHHHCG--GGTTSCEEEC-----------------------------------CCSEEECCCTTSSC-CCSSEEEE
T ss_pred HHHHHHHhcC--CCCCccEEEECHHHHHHHHHHHHHHHHHhHHHHHHhc--ccCCcCCCcceeeCCHHHhc-CCCCeEEE
Confidence 4556666542 23345544 4445666666 9999999998885 57999999999998877764 47899999
Q ss_pred EeCCCCCcchHHHHHHHhCCCCCCeEEEecCCCCCChhHHHHhccCCceEEEeeceEEeeeh-hhhhhhhhhcCchhhHH
Q psy13345 78 VSTPDMECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLEG-EELEEYQKKKDKEAKDK 156 (276)
Q Consensus 78 assgml~~G~s~~~l~~~~~d~~N~Iiltgy~~~gTlgr~L~~~~~~~~i~i~~~~~~~l~~-~el~~fsaHad~~~l~~ 156 (276)
|+||||++|++++||++|++|++|+|+|||||++||+||+|++++ +.+....++.+++++ .+...||+|||+++|++
T Consensus 327 a~~gm~~~g~~~~~l~~~~~~~~~~ii~~gy~~~gt~g~~l~~~~--~~~~~~~g~~~~~~~~v~~~~~S~Had~~~l~~ 404 (459)
T 2i7t_A 327 ASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEP--EEITTMSGQKLPLKMSVDYISFSAHTDYQQTSE 404 (459)
T ss_dssp ESCTTCSSHHHHHHHHHHTTCTTCEEEECSCCCTTSHHHHHTTCC--SEEECTTSCEEECCSEEEECCCSCCCCHHHHHH
T ss_pred EcCcccCCCHHHHHHHHHcCCCCCeEEEEecCCCCChHHHHhhCC--ceeeeeCCcEEEEEEEEEEeeecccCCHHHHHH
Confidence 999999999999999999999999999999999999999999873 455543678888888 45558999999999999
Q ss_pred HHhhcCCCcceEEeCh-hhHHHHHHHHHHc-CCCcccccceeeecCceeccc
Q psy13345 157 QEKEKIPPHDTSFINE-LQLSDFKQTLQRN-GIDCEFMDGVLICCRGTVAVR 206 (276)
Q Consensus 157 ~i~~~~p~~v~lvHGE-~~~~~Lk~~L~~~-G~~aef~gg~l~~p~~~~~i~ 206 (276)
|++...|+++++|||| .++..|++.|.++ +.+.+ .+-.+++|.+.+++.
T Consensus 405 ~i~~~~p~~v~~vHGe~~~~~~~~~~l~~~~~~~~~-~~~~~~~p~~~~~~~ 455 (459)
T 2i7t_A 405 FIRALKPPHVILVHGEQNEMARLKAALIREYEDNDE-VHIEVHNPRNTEAVT 455 (459)
T ss_dssp HHHHHCCSEEEEESSCHHHHHHHHHHHHHHHSSCTT-CCCEEECCCTTCCEE
T ss_pred HHHhcCCCeEEEeCCCHHHHHHHHHHHHHHhccccc-cCceEEeCCCCCEEE
Confidence 9999999999999999 8889999999875 43322 245678888766553
No 3
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=99.96 E-value=1.4e-29 Score=254.65 Aligned_cols=193 Identities=17% Similarity=0.202 Sum_probs=146.4
Q ss_pred hHHHHHHHhcCCCCCccchhhhhhhh----HHhhc-ccccCHHHHHHHHhccCCCCCCCCceecCCHHHHhcC---CCCe
Q psy13345 3 DKLMKSFEGARNNPFHFKHVKLCHSL----AELAK-IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKV---PSPK 74 (276)
Q Consensus 3 ~~L~~l~~~~k~~~i~~~Pi~~s~~t----~~~ak-~ewms~~i~~~~~~~~~nPF~f~~l~~v~s~eel~~~---~~P~ 74 (276)
|+|..+.+.++.+.++++|||+++++ ..|.+ ++||++.+++.+..++.+||.+++++.+++.++..++ ++|+
T Consensus 426 ell~~l~~~~~~~~~~~~~V~~dg~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 505 (640)
T 2xr1_A 426 EVMIVLEESIRKGLIPEVPVYLDGMIWEATAIHATHPEYLNNDLRKLIFQKGQNPFLSECFKPVDSHEARQKIIQNPQPC 505 (640)
T ss_dssp HHHHHHHHHHHHTSSCCCCEEEESSHHHHHHHHHHCGGGSCHHHHHHC------CTTCTTEEEEC-CHHHHHC----CCC
T ss_pred HHHHHHHHHHHhCCCCCCcEEEEhHHHHHHHHHHHhHhhhcHHHHHHHHhcccCcccCCceEEeCCHHHHHHHhcCCCCe
Confidence 56666666666667778898887753 34555 9999999998876567899999999999876554332 6899
Q ss_pred EEEEeCCCCCcchHHHHHHHhCCCCCCeEEEecCCCCCChhHHHHhccCCceEEEe--ece--EEeeeh--hhhhhhhhh
Q psy13345 75 VVLVSTPDMECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQ--VKK--RIRLEG--EELEEYQKK 148 (276)
Q Consensus 75 VIiassgml~~G~s~~~l~~~~~d~~N~Iiltgy~~~gTlgr~L~~~~~~~~i~i~--~~~--~~~l~~--~el~~fsaH 148 (276)
|||||+|||+||+++++|++|++|++|+|||||||++||+||+|.++. ..|.+- .|. .+++++ ..+.+||+|
T Consensus 506 vIiat~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~gt~gr~l~~g~--~~i~~~~~~G~~~~v~v~~~v~~i~g~SgH 583 (640)
T 2xr1_A 506 VILATSGMMNGGPVMEYFKAFAEDPRNTLVFVGYQADGTIGRRIQKGW--KEIPMTGKNGSTEMLKMNMEVQVVDGFSGH 583 (640)
T ss_dssp EEEESCTTSSSSHHHHHHHHHSSCTTCEEEECSCCCTTCHHHHHHTTC--CC-----------CCCCCSEEEECCCCSCS
T ss_pred EEEeCCCccCCChHHHHHHHhhCCCCCEEEEecCCCCCCHHHHHhhcc--ceeeeeccCCCceEEeeeEEEEEEcccccc
Confidence 999999999999999999999999999999999999999999998873 335541 255 566666 344459999
Q ss_pred cCchhhHHHHhhcC--CCcceEEeCh-hhHHHHHHHHHHc-CCCcccccceeeecCceec
Q psy13345 149 KDKEAKDKQEKEKI--PPHDTSFINE-LQLSDFKQTLQRN-GIDCEFMDGVLICCRGTVA 204 (276)
Q Consensus 149 ad~~~l~~~i~~~~--p~~v~lvHGE-~~~~~Lk~~L~~~-G~~aef~gg~l~~p~~~~~ 204 (276)
||+++|++|++.++ |+++++|||| ..+..|++.+.++ |+ .+++|.|.+.
T Consensus 584 ad~~eL~~~i~~~~~~P~~vi~vHGe~~~~~~~a~~~~~~~g~-------~~~~p~~g~~ 636 (640)
T 2xr1_A 584 SDRRQLMEYVKRMQPRPERVFTEHGDEKACVDLASSVYKKLKI-------ETRALTNLET 636 (640)
T ss_dssp CCHHHHHHHHHTCBSCCSEEEEESSCHHHHHHHHHHHHHHHCC-------EEEECCTTCE
T ss_pred CCHHHHHHHHHHhccCCCEEEEECCCHHHHHHHHHHHHHHcCC-------eEEeCCCCCE
Confidence 99999999999987 9999999999 7889999999654 54 4556666543
No 4
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=99.96 E-value=7.5e-29 Score=249.78 Aligned_cols=193 Identities=19% Similarity=0.218 Sum_probs=156.0
Q ss_pred hHHHHHHHhcCCCCCccchhhhhhh----hHHhhc-ccccCHHHHHHHHhccCCCCCCCCceecCCHHH---HhcCCCCe
Q psy13345 3 DKLMKSFEGARNNPFHFKHVKLCHS----LAELAK-IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAE---LAKVPSPK 74 (276)
Q Consensus 3 ~~L~~l~~~~k~~~i~~~Pi~~s~~----t~~~ak-~ewms~~i~~~~~~~~~nPF~f~~l~~v~s~ee---l~~~~~P~ 74 (276)
|+|..+.+.++.+.++ +|||++++ +..|.+ ++||++.+++.+..++.+||.+++++.+++.++ ++..++|+
T Consensus 438 ell~~l~~~~~~~~l~-~~I~~dg~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~~ 516 (651)
T 3af5_A 438 EVMMVLEEYARIGGIE-VPIYLDGMIWEATAIHTAYPEYLSRRLREQIFKEGYNPFLSEIFHPVANSRERQDIIDSNEPA 516 (651)
T ss_dssp HHHHHHHHHHTTTCCC-SCEEEESSHHHHHHHHHTCGGGSCHHHHHHTTTSSCCSTTCTTEEECCSHHHHHHHHHSCSCE
T ss_pred HHHHHHHHhhhhcCCC-CcEEEechHHHHHHHHHHhHHhcCHHHHHHHHhccCCCccCCceEEcCCHHHHHHHhcCCCCE
Confidence 5666666666666666 88888765 334556 999999999887667789999999999997655 33337899
Q ss_pred EEEEeCCCCCcchHHHHHHHhCCCCCCeEEEecCCCCCChhHHHHhccCCceEEEe--ece--EEeeeh--hhhhhhhhh
Q psy13345 75 VVLVSTPDMECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQ--VKK--RIRLEG--EELEEYQKK 148 (276)
Q Consensus 75 VIiassgml~~G~s~~~l~~~~~d~~N~Iiltgy~~~gTlgr~L~~~~~~~~i~i~--~~~--~~~l~~--~el~~fsaH 148 (276)
|||||+|||+||+++++|++|++|++|+|||||||++||+||+|.++ ...+.+- .|. .+++++ ..+.+||+|
T Consensus 517 vIia~~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~gt~gr~l~~g--~~~i~~~~~~G~~~~v~v~~~v~~i~g~SgH 594 (651)
T 3af5_A 517 IIIASSGMLVGGPSVEYFKQLAPDPKNSIIFVSYQAEGTLGRQVQSG--IREIPMVGEEGRTEVIKVNMEVHTIDGFSGH 594 (651)
T ss_dssp EEEESCTTSSSSHHHHHHHHHTTCTTCEEEECSCCCTTCHHHHHHHT--CSEEEEECGGGCEEEEECCSEEEECGGGCSS
T ss_pred EEEECCCCCCCCHHHHHHHHHhCCCCCEEEEeCCCCCCcHHHHHHhc--cceeeehhcCCCceEEEeEEEEEEcCcccCc
Confidence 99999999999999999999999999999999999999999999987 3346652 355 777776 345559999
Q ss_pred cCchhhHHHHhhcC--CCcceEEeCh-hhHHHHHHHHHHc-CCCcccccceeeecCceecc
Q psy13345 149 KDKEAKDKQEKEKI--PPHDTSFINE-LQLSDFKQTLQRN-GIDCEFMDGVLICCRGTVAV 205 (276)
Q Consensus 149 ad~~~l~~~i~~~~--p~~v~lvHGE-~~~~~Lk~~L~~~-G~~aef~gg~l~~p~~~~~i 205 (276)
||+++|++|++.++ |+++++|||| ..+..|++.+.++ |+ .+++|.+.+.+
T Consensus 595 ad~~eL~~~i~~~~~~P~~vi~vHGe~~~~~~la~~~~~~~g~-------~~~~p~~g~~~ 648 (651)
T 3af5_A 595 ADRRELMNYVAKVRPRPERIITVHGEPQKCLDLATSIHRKFGI-------STRAPNNLDTI 648 (651)
T ss_dssp CCHHHHHHHHHHCBSCCSEEEEESSCHHHHHHHHHHHHHHHCC-------EEECCCTTCEE
T ss_pred CCHHHHHHHHHHhhcCCCEEEEEcCCHHHHHHHHHHHHHhcCC-------eEEECCCCCEE
Confidence 99999999999988 9999999999 7789999998654 54 35566665443
No 5
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.95 E-value=2.6e-28 Score=245.22 Aligned_cols=194 Identities=17% Similarity=0.199 Sum_probs=155.7
Q ss_pred hHHHHHHHhcCCCCCccchhhhhhhh----HHhhc-ccccCHHHHHHHHhccCCCCCCCCceecCCHHHHhcC--CCCeE
Q psy13345 3 DKLMKSFEGARNNPFHFKHVKLCHSL----AELAK-IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKV--PSPKV 75 (276)
Q Consensus 3 ~~L~~l~~~~k~~~i~~~Pi~~s~~t----~~~ak-~ewms~~i~~~~~~~~~nPF~f~~l~~v~s~eel~~~--~~P~V 75 (276)
|+|..+.+.++.+.++++|||+++++ ..|.+ ++||+..+++.+..++.+||.+++++.+.+.++..++ ++|+|
T Consensus 423 ell~~l~~~~~~~~~~~~~V~~dg~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~v 502 (636)
T 2ycb_A 423 ELMIVLEEYIRTGIIDEVPVYIDGMIWEANAIHTARPEYLSKDLRDQIFHMGHNPFISDIFHKVNGMDERREIVEGEPSI 502 (636)
T ss_dssp HHHHHHHHHHHTTSSCCCCEEEEHHHHHHHHHHHHSGGGSCHHHHHHHHTTCCCGGGCTTEEEECCHHHHHHHHHSSSCE
T ss_pred HHHHHHHHHHHhCCCCCCeEEEehHHHHHHHHHHHhHHhhCHHHHHHHHhccCCcccCCceEEeCCHHHHHHhccCCCEE
Confidence 55555555566667778898887763 33555 9999999998887677899999999999876554332 68999
Q ss_pred EEEeCCCCCcchHHHHHHHhCCCCCCeEEEecCCCCCChhHHHHhccCCceEEEe--ece--EEeeeh--hhhhhhhhhc
Q psy13345 76 VLVSTPDMECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQ--VKK--RIRLEG--EELEEYQKKK 149 (276)
Q Consensus 76 Iiassgml~~G~s~~~l~~~~~d~~N~Iiltgy~~~gTlgr~L~~~~~~~~i~i~--~~~--~~~l~~--~el~~fsaHa 149 (276)
||||+|||+||+++++|++|++|++|+|||||||++||+||+|.++ ...+.+- .|. .+++++ ..+.+||+||
T Consensus 503 Iiat~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~Gt~gr~l~~g--~~~i~~~~~~G~~~~v~v~~~v~~i~~~SgHa 580 (636)
T 2ycb_A 503 ILSTSGMLTGGNSLEYFKWLCEDPDNSLVFVGYQAEGSLGRRIQKG--WKEIPLKDEDDKMRVYNVRMNIKTIEGFSGHS 580 (636)
T ss_dssp EEESCSSSSSHHHHHHHHHHTTCTTSEEEECSCCCSSSHHHHHHTT--CCEEEEECSSSCEEEEECCSEEEECCSCCSSC
T ss_pred EEecCCccCCChHHHHHHHHhCCCCCEEEEecCCCCCCHHHHhhcC--CceeeeeccCCceeEEEeEEEEEEECCcceeC
Confidence 9999999999999999999999999999999999999999999876 3446552 355 777776 3344599999
Q ss_pred CchhhHHHHhhcC--CCcceEEeCh-hhHHHHHHHHHHc-CCCcccccceeeecCceecc
Q psy13345 150 DKEAKDKQEKEKI--PPHDTSFINE-LQLSDFKQTLQRN-GIDCEFMDGVLICCRGTVAV 205 (276)
Q Consensus 150 d~~~l~~~i~~~~--p~~v~lvHGE-~~~~~Lk~~L~~~-G~~aef~gg~l~~p~~~~~i 205 (276)
|+++|++|++.++ |+++++|||| ..+..|++.+.++ |+ .+++|.|.+.+
T Consensus 581 d~~eL~~~i~~~~~~Pk~vi~vHGe~~~~~~~a~~~~~~~g~-------~~~~p~~g~~~ 633 (636)
T 2ycb_A 581 DRRQLMEYVKRISPKPEKILLCHGDNYKTLDLASSIYRTYRI-------ETKTPLNLETV 633 (636)
T ss_dssp CHHHHHHHHHSCSSCCSEEEEESSCHHHHHHHHHHHHHHHCC-------EEECCCTTCEE
T ss_pred CHHHHHHHHHHhccCCCEEEEECCCHHHHHHHHHHHHHHcCC-------cEEeCCCCCEE
Confidence 9999999999988 9999999999 7788999999654 54 35566664443
No 6
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10
Probab=99.79 E-value=1.9e-19 Score=183.15 Aligned_cols=138 Identities=23% Similarity=0.373 Sum_probs=104.5
Q ss_pred HHHH-HhcCCCCCccchhhhhh----hhHHhhc--ccccCHHHHHHHHhccC--CCCC-CCCceecCCHHHHhcCCCCeE
Q psy13345 6 MKSF-EGARNNPFHFKHVKLCH----SLAELAK--IEWMSDKLMKSFEGARN--NPFH-FKHVKLCHSLAELAKVPSPKV 75 (276)
Q Consensus 6 ~~l~-~~~k~~~i~~~Pi~~s~----~t~~~ak--~ewms~~i~~~~~~~~~--nPF~-f~~l~~v~s~eel~~~~~P~V 75 (276)
..+| ++.+.+.+++.|||+.+ +++.+++ ++||++++.+.+.. +. +||. |+++++ .+.++|+++++|||
T Consensus 262 ~~~~~~~~~~~~~~~~pI~l~g~~a~~~~~i~~~~~e~l~~~~~~~~~~-~~~~~pf~~~~~l~~-~~~~~l~~~~~p~V 339 (717)
T 2i7x_A 262 HELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWEN-RNNTSPFEIGSRIKI-IAPNELSKYPGSKI 339 (717)
T ss_dssp HHHHTTC-------CCCEEEECTTTTHHHHHHHTCGGGSCHHHHHHHHS-SSSCCTTCCTTTEEE-CCGGGGGGCCSCEE
T ss_pred HHhhhhhhccccCCCceEEEECHHHHHHHHHHHHHHHHhChHHHHHHhc-ccccCCccccccCcc-CCHHHHhhCCCCEE
Confidence 3444 33345566667766654 4677777 79999999888863 33 5999 899998 77888999888998
Q ss_pred EEEeCCCCCcchHHHHHHHhCCCCCCeEEEecCCC-CCChhHHHHhc------------------cCCceEEEeeceEEe
Q psy13345 76 VLVSTPDMECGFSRDLFFQWCSSPENSIIITNRTS-PGTLARDLIEL------------------GGNRTLTLQVKKRIR 136 (276)
Q Consensus 76 Iiassgml~~G~s~~~l~~~~~d~~N~Iiltgy~~-~gTlgr~L~~~------------------~~~~~i~i~~~~~~~ 136 (276)
|+||. +||+++++|++||+||+|+|||||||+ +||+||+|+++ +.++.++++..+++|
T Consensus 340 I~aSG---~gG~~~~~L~~~a~~~~n~VIf~g~~~p~gTlgr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (717)
T 2i7x_A 340 CFVSE---VGALINEVIIKVGNSEKTTLILTKPSFECASSLDKILEIVEQDERNWKTFPEDGKSFLCDNYISIDTIKEEP 416 (717)
T ss_dssp EEEES---CHHHHHHHHHHHSSCTTEEEEECSSCCTTCHHHHHHHHHHHTCC--------CCCCEECCEEEEEEEEEEEE
T ss_pred EEECC---CCHHHHHHHHHHcCCCcCEEEEEcCCCCCCChHHHHHhhhhhhcccccccccccccccCCceEEEEEeeecc
Confidence 88765 899999999999999999999999999 69999999985 223689999999999
Q ss_pred eehhhhhhhhhh
Q psy13345 137 LEGEELEEYQKK 148 (276)
Q Consensus 137 l~~~el~~fsaH 148 (276)
|.++||..|.+.
T Consensus 417 L~g~EL~~y~~~ 428 (717)
T 2i7x_A 417 LSKEETEAFKVQ 428 (717)
T ss_dssp SCSCCC------
T ss_pred CCHHHHHHHHHH
Confidence 999999999764
No 7
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Probab=99.28 E-value=4.6e-12 Score=125.47 Aligned_cols=118 Identities=13% Similarity=0.105 Sum_probs=81.0
Q ss_pred CHHHHhcCCCCeEEEEeCCCCCcchHHHHHHHhCC--------CCCCeEEEecCCCCCChhHH--HHhccCCceEEEeec
Q psy13345 63 SLAELAKVPSPKVVLVSTPDMECGFSRDLFFQWCS--------SPENSIIITNRTSPGTLARD--LIELGGNRTLTLQVK 132 (276)
Q Consensus 63 s~eel~~~~~P~VIiassgml~~G~s~~~l~~~~~--------d~~N~Iiltgy~~~gTlgr~--L~~~~~~~~i~i~~~ 132 (276)
+.+++++.+.+++||.++|+. |++ ...+.+++. +++|+|||+|||.+||.++. +.+.-....+++
T Consensus 296 ~~~~~~~~~~~~~vi~~tg~~-ge~-~~~l~ria~~~h~~~~~~~~~~vi~s~~~~~G~~~~~~~~~~~l~~~g~~v--- 370 (562)
T 3bk2_A 296 TLEEVKDLPDHQVLILATGSQ-GQP-MSVLHRLAFEGHAKMAIKPGDTVILSSSPIPGNEEAVNRVINRLYALGAYV--- 370 (562)
T ss_dssp CTGGGTTSCGGGEEEEECCTT-SCS-HHHHHHHHTTCCSSCCCCTTCEEEECSCCCTTCHHHHHHHHHHHHHTTCEE---
T ss_pred CHHHHhcCCCCCEEEEEcCCC-chh-HHHHHhhhhcccccccCCCCCEEEEECCCCCCCeEehhhhcCceeeCCCEE---
Confidence 345777776655444444543 443 335777764 89999999999999997753 222100000111
Q ss_pred eEEeeehhhhhhhhhhcCchhhHHHHhhcCCCcceEEeCh-hhHHHHHHHHHHcCCC
Q psy13345 133 KRIRLEGEELEEYQKKKDKEAKDKQEKEKIPPHDTSFINE-LQLSDFKQTLQRNGID 188 (276)
Q Consensus 133 ~~~~l~~~el~~fsaHad~~~l~~~i~~~~p~~v~lvHGE-~~~~~Lk~~L~~~G~~ 188 (276)
+.. ..+-..||+|||+++|+.|++.++|++++.|||| ..+..+++.+.+.|++
T Consensus 371 --~~~-~~~~i~~SgHa~~~eL~~~i~~~~Pk~vipvHGe~~~~~~~~~~~~~~g~~ 424 (562)
T 3bk2_A 371 --LYP-PTYKVHASGHASQEELKLILNLTTPRFFLPWHGEVRHQMNFKWLAESMSRP 424 (562)
T ss_dssp --ECT-TTSSSCCCSSCCHHHHHHHHHHHCCSEEEEESBCHHHHHHHHHHHHTSSSC
T ss_pred --EEc-cCCceEEeCCCCHHHHHHHHHhcCCCEEEEEcCCHHHHHHHHHHHHHcCCC
Confidence 111 1233579999999999999999999999999999 7788899877777874
No 8
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}
Probab=99.07 E-value=1.7e-10 Score=114.19 Aligned_cols=126 Identities=10% Similarity=0.070 Sum_probs=92.1
Q ss_pred CCCCCceecCCHHHHhcCCC-CeEEEEeCCCCCcchHHHHHHHhCCCCCC--------eEEEecCCCCCChhH--HHHhc
Q psy13345 53 FHFKHVKLCHSLAELAKVPS-PKVVLVSTPDMECGFSRDLFFQWCSSPEN--------SIIITNRTSPGTLAR--DLIEL 121 (276)
Q Consensus 53 F~f~~l~~v~s~eel~~~~~-P~VIiassgml~~G~s~~~l~~~~~d~~N--------~Iiltgy~~~gTlgr--~L~~~ 121 (276)
+.++...+++ .+++++++. +.||++|++ .|..+.+|.+++.++.| +|||+|||.+|+.++ ++.+.
T Consensus 272 l~~p~~~~v~-~~~~~~~~~~~~vii~tgs---qGe~~~~L~r~a~~~~~~~~~~~~d~vi~s~~~ipGne~~~~~~~~~ 347 (555)
T 3zq4_A 272 INCPKNTFIE-HNEINRMPANKVTILCTGS---QGEPMAALSRIANGTHRQISINPGDTVVFSSSPIPGNTISVSRTINQ 347 (555)
T ss_dssp CCCCGGGEEC-GGGTTTSCGGGEEEEECCT---TCCTTSHHHHHHSSCCSSCCCCTTCEEEECSCCCTTCHHHHHHHHHH
T ss_pred ccCCcccEeC-HHHHhhCCCCCEEEEeCCC---CchHHHHHHHHhcCCCCccccCCCCEEEEECCCCCCcHHHHHHHHHH
Confidence 3444444554 667877654 566677766 67779999999999888 999999999999743 23322
Q ss_pred cCCceEEEeeceEEeeehhhhhhhhhhcCchhhHHHHhhcCCCcceEEeCh-hhHHHHHHHHHHcCCC
Q psy13345 122 GGNRTLTLQVKKRIRLEGEELEEYQKKKDKEAKDKQEKEKIPPHDTSFINE-LQLSDFKQTLQRNGID 188 (276)
Q Consensus 122 ~~~~~i~i~~~~~~~l~~~el~~fsaHad~~~l~~~i~~~~p~~v~lvHGE-~~~~~Lk~~L~~~G~~ 188 (276)
- .+.+-++.-...+...||+||++++|+.|++.++|+.++.|||| ..+..+++...+.|++
T Consensus 348 l------~~~g~~v~~~~~~~~h~SgHa~~~eL~~~~~~~~Pk~~ipvHGe~~~~~~~~~~a~~~G~~ 409 (555)
T 3zq4_A 348 L------YRAGAEVIHGPLNDIHTSGHGGQEEQKLMLRLIKPKFFMPIHGEYRMQKMHVKLATDCGIP 409 (555)
T ss_dssp H------HHTTCEEECSSSSCCCCCSSCCHHHHHHHHHHSCEEEEEEESBCHHHHHHHHHHHHHTTCC
T ss_pred H------HHCCCEEEecCCcceEEeCCCCHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCC
Confidence 0 00122222122456789999999999999999999999999999 7788888877777885
No 9
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Probab=98.79 E-value=1.4e-09 Score=104.14 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=47.2
Q ss_pred eccceeEEeeCCcccccchhhhhhhhcCCCCCeEEEeccCCCCCccccee
Q psy13345 203 VAVRRVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNRNRADDSDSNVI 252 (276)
Q Consensus 203 ~~i~~v~~~~~~~~~~g~sr~lf~~~~~~~~n~~~~~~~~~~~~~~~~~~ 252 (276)
..-||||+|+++|+++|.++..|.+||.||||.||||||.++||+||+++
T Consensus 303 ~~~p~viia~~gm~~~G~~~~~l~~~~~~~~n~ii~~gyq~~gt~g~~l~ 352 (431)
T 3iek_A 303 APGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEII 352 (431)
T ss_dssp SCSSEEEEESCTTSSSSHHHHHHHHHTTCTTCEEEECSCCCTTSHHHHHH
T ss_pred CCCCeEEEecCCCCCCChHHHHHHHhcCCCCCeEEEECCCCCCChHHHhh
Confidence 35699999999999999999999999999999999999999999998765
No 10
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A
Probab=98.39 E-value=8.4e-08 Score=92.07 Aligned_cols=50 Identities=28% Similarity=0.492 Sum_probs=46.7
Q ss_pred eccceeEEeeCCcccccchhhhhhhhcCCCCCeEEEeccCCCCCccccee
Q psy13345 203 VAVRRVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNRNRADDSDSNVI 252 (276)
Q Consensus 203 ~~i~~v~~~~~~~~~~g~sr~lf~~~~~~~~n~~~~~~~~~~~~~~~~~~ 252 (276)
..-||||+|+++|+++|.+|.+|.+||.||+|.|+||||..+||++|+++
T Consensus 319 ~~~~~viia~~gm~~~g~~~~~l~~~~~~~~~~ii~~gy~~~gt~g~~l~ 368 (459)
T 2i7t_A 319 DIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIM 368 (459)
T ss_dssp CCSSEEEEESCTTCSSHHHHHHHHHHTTCTTCEEEECSCCCTTSHHHHHT
T ss_pred CCCCeEEEEcCcccCCCHHHHHHHHHcCCCCCeEEEEecCCCCChHHHHh
Confidence 45799999999999999999999999999999999999999999997654
No 11
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10
Probab=98.14 E-value=1.3e-06 Score=82.66 Aligned_cols=89 Identities=13% Similarity=0.015 Sum_probs=63.8
Q ss_pred cCCHHHHhcCCCCeEEEEeCCCCCcchHHHHHHHhCCCCCCeEEEecCCCCCCh---hHHHHhccCCceEEEeeceEEee
Q psy13345 61 CHSLAELAKVPSPKVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNRTSPGTL---ARDLIELGGNRTLTLQVKKRIRL 137 (276)
Q Consensus 61 v~s~eel~~~~~P~VIiassgml~~G~s~~~l~~~~~d~~N~Iiltgy~~~gTl---gr~L~~~~~~~~i~i~~~~~~~l 137 (276)
+.+.+++++.++++||+ | +|. ++ ++ .+.++|||++++.+|+. ++++.+.-.....++ .
T Consensus 315 ~~~~~~~~~~~~~~ii~----~--~~~--~~--~l--~~~~~vi~s~~~~~g~~~~~~~~~~~~~~~~~~~v-----~-- 375 (429)
T 2az4_A 315 EIPYDTLLKDKTDYLWQ----V--VNQ--FD--NL--QEGSLYIHSDAQPLGDFDPQYRVFLDLLAKKDITF-----V-- 375 (429)
T ss_dssp BCCHHHHHHCSSSEEEE----C--CSC--GG--GS--CTTCEEEEESCSSCSTTSHHHHHHHHHHHHTTCEE-----E--
T ss_pred eecHHHHhhCCCcEEEE----e--cCc--HH--hh--CCCCEEEEeCCCCCcccchHHHHHHHHHHhCCCEE-----E--
Confidence 44567888888887766 3 444 22 33 34599999999999984 666665310001122 1
Q ss_pred ehhhhhhhhhhcCchhhHHHHhhcCCCcceEEeCh
Q psy13345 138 EGEELEEYQKKKDKEAKDKQEKEKIPPHDTSFINE 172 (276)
Q Consensus 138 ~~~el~~fsaHad~~~l~~~i~~~~p~~v~lvHGE 172 (276)
.+ .||+|||+++|+.|++.++|++++.||||
T Consensus 376 ---~i-~~SgHa~~~eL~~~~~~~~Pk~~ipvHGe 406 (429)
T 2az4_A 376 ---RL-ACSGHAIPEDLDKIIALIEPQVLVPIHTL 406 (429)
T ss_dssp ---EC-CCCSSCCHHHHHHHHHHHCCSEEEEESCS
T ss_pred ---EE-eecCCCCHHHHHHHHHhhCCCEEEECCCC
Confidence 22 49999999999999999999999999999
No 12
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=97.81 E-value=7.2e-06 Score=82.29 Aligned_cols=48 Identities=15% Similarity=0.274 Sum_probs=44.8
Q ss_pred ccceeEEeeCCcccccchhhhhhhhcCCCCCeEEEeccCCCCCcccce
Q psy13345 204 AVRRVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNRNRADDSDSNV 251 (276)
Q Consensus 204 ~i~~v~~~~~~~~~~g~sr~lf~~~~~~~~n~~~~~~~~~~~~~~~~~ 251 (276)
.-|+||+|+++|+++|.++..|.+||.||+|.|+||||..+||++|++
T Consensus 502 ~~~~vIiat~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~gt~gr~l 549 (640)
T 2xr1_A 502 PQPCVILATSGMMNGGPVMEYFKAFAEDPRNTLVFVGYQADGTIGRRI 549 (640)
T ss_dssp -CCCEEEESCTTSSSSHHHHHHHHHSSCTTCEEEECSCCCTTCHHHHH
T ss_pred CCCeEEEeCCCccCCChHHHHHHHhhCCCCCEEEEecCCCCCCHHHHH
Confidence 568999999999999999999999999999999999999999999863
No 13
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=97.80 E-value=7.9e-06 Score=82.09 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=45.1
Q ss_pred ccceeEEeeCCcccccchhhhhhhhcCCCCCeEEEeccCCCCCcccce
Q psy13345 204 AVRRVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNRNRADDSDSNV 251 (276)
Q Consensus 204 ~i~~v~~~~~~~~~~g~sr~lf~~~~~~~~n~~~~~~~~~~~~~~~~~ 251 (276)
.-|+||+|+++|+++|.++..|.+||.||+|.|+||||..+||+++++
T Consensus 513 ~~~~vIia~~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~gt~gr~l 560 (651)
T 3af5_A 513 NEPAIIIASSGMLVGGPSVEYFKQLAPDPKNSIIFVSYQAEGTLGRQV 560 (651)
T ss_dssp CSCEEEEESCTTSSSSHHHHHHHHHTTCTTCEEEECSCCCTTCHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHhCCCCCEEEEeCCCCCCcHHHHH
Confidence 458999999999999999999999999999999999999999988763
No 14
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.69 E-value=1.3e-05 Score=80.26 Aligned_cols=47 Identities=17% Similarity=0.321 Sum_probs=44.5
Q ss_pred ccceeEEeeCCcccccchhhhhhhhcCCCCCeEEEeccCCCCCcccc
Q psy13345 204 AVRRVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNRNRADDSDSN 250 (276)
Q Consensus 204 ~i~~v~~~~~~~~~~g~sr~lf~~~~~~~~n~~~~~~~~~~~~~~~~ 250 (276)
.-|+||+++++|+++|.++..|.+||.||+|.|+||||..+||++++
T Consensus 498 ~~~~vIiat~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~Gt~gr~ 544 (636)
T 2ycb_A 498 GEPSIILSTSGMLTGGNSLEYFKWLCEDPDNSLVFVGYQAEGSLGRR 544 (636)
T ss_dssp SSSCEEEESCSSSSSHHHHHHHHHHTTCTTSEEEECSCCCSSSHHHH
T ss_pred CCCEEEEecCCccCCChHHHHHHHHhCCCCCEEEEecCCCCCCHHHH
Confidence 45899999999999999999999999999999999999999998875
No 15
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10
Probab=97.53 E-value=1.8e-05 Score=80.45 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=42.0
Q ss_pred ccceeEEeeCCcccccchhhhhhhhcCCCCCeEEEeccCC-CCCcccceee
Q psy13345 204 AVRRVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNRNR-ADDSDSNVIV 253 (276)
Q Consensus 204 ~i~~v~~~~~~~~~~g~sr~lf~~~~~~~~n~~~~~~~~~-~~~~~~~~~~ 253 (276)
+-|+||+||+ ++|.++.+|.+||.||+|.||||||.. +||++|+++.
T Consensus 335 ~~p~VI~aSG---~gG~~~~~L~~~a~~~~n~VIf~g~~~p~gTlgr~l~~ 382 (717)
T 2i7x_A 335 PGSKICFVSE---VGALINEVIIKVGNSEKTTLILTKPSFECASSLDKILE 382 (717)
T ss_dssp CSCEEEEEES---CHHHHHHHHHHHSSCTTEEEEECSSCCTTCHHHHHHHH
T ss_pred CCCEEEEECC---CCHHHHHHHHHHcCCCcCEEEEEcCCCCCCChHHHHHh
Confidence 4578888876 889999999999999999999999999 7999987753
No 16
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Probab=87.94 E-value=1 Score=44.06 Aligned_cols=41 Identities=10% Similarity=0.321 Sum_probs=28.2
Q ss_pred ceeEEeeCCcccccchhhhhhhhcC--------CCCCeEEEeccCCCCCccc
Q psy13345 206 RRVVLVSTPDMECGFSRDLFFQWCS--------SPENSIIITNRNRADDSDS 249 (276)
Q Consensus 206 ~~v~~~~~~~~~~g~sr~lf~~~~~--------~~~n~~~~~~~~~~~~~~~ 249 (276)
+.|+++| ++. |-....|-+||. +|+|.|+|+|+..+||.++
T Consensus 307 ~~vi~~t-g~~--ge~~~~l~ria~~~h~~~~~~~~~~vi~s~~~~~G~~~~ 355 (562)
T 3bk2_A 307 QVLILAT-GSQ--GQPMSVLHRLAFEGHAKMAIKPGDTVILSSSPIPGNEEA 355 (562)
T ss_dssp GEEEEEC-CTT--SCSHHHHHHHHTTCCSSCCCCTTCEEEECSCCCTTCHHH
T ss_pred CEEEEEc-CCC--chhHHHHHhhhhcccccccCCCCCEEEEECCCCCCCeEe
Confidence 3455555 442 444445666654 8999999999999999653
No 17
>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens}
Probab=85.38 E-value=0.23 Score=45.63 Aligned_cols=32 Identities=6% Similarity=0.005 Sum_probs=29.4
Q ss_pred hhhhhhhcCchhhHHHHhhcCCCcceEEe-Chh
Q psy13345 142 LEEYQKKKDKEAKDKQEKEKIPPHDTSFI-NEL 173 (276)
Q Consensus 142 l~~fsaHad~~~l~~~i~~~~p~~v~lvH-GE~ 173 (276)
..-||+|+++.||+.|++-++|+.++-+| ||.
T Consensus 271 ~vh~S~Ha~~~EL~~~~~~~~P~~~iPvh~ge~ 303 (336)
T 3zdk_A 271 VIPYSDHSSYSELRAFVAALKPCQVVPIVSRRP 303 (336)
T ss_dssp EECCCSSCBHHHHHHHHHHHCCSCEEESCTTSC
T ss_pred eeEecCCCCHHHHHHHHHHhCCCEEEEEECCcC
Confidence 35589999999999999999999999999 993
No 18
>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens}
Probab=81.21 E-value=0.81 Score=42.46 Aligned_cols=43 Identities=12% Similarity=0.102 Sum_probs=32.7
Q ss_pred hhhhhcCchhhHHHHhhcCCCcceEEeC--h-h---hH-HHHHHHHHHcC
Q psy13345 144 EYQKKKDKEAKDKQEKEKIPPHDTSFIN--E-L---QL-SDFKQTLQRNG 186 (276)
Q Consensus 144 ~fsaHad~~~l~~~i~~~~p~~v~lvHG--E-~---~~-~~Lk~~L~~~G 186 (276)
-||+|+...||.+|++.++|++++-.|+ . . +| ..|+.+..+.|
T Consensus 317 pySeHss~~EL~~fv~~l~p~~iiptv~~~~~~~~~~m~~~~~~w~~~~~ 366 (367)
T 4b87_A 317 PYSEHSSYLEMKRFVQWLKPQKIIPTVNVGTWKSRSTMEKYFREWKLEAG 366 (367)
T ss_dssp CCCSSCCHHHHHHHHHHHCCSEEEECSSCSSHHHHHHHHHHHHHHHHHHC
T ss_pred eccCCCCHHHHHHHHHhcCCCeEECeecCCCHHHHHHHHHHHHHHHhhcC
Confidence 4899999999999999999999998884 2 2 23 34555555543
No 19
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}
Probab=80.30 E-value=4.2 Score=39.70 Aligned_cols=98 Identities=6% Similarity=0.073 Sum_probs=54.6
Q ss_pred hhhhcCchh-hHHHHhhcCCCcceEEeChhhHHHHHHHHHHcCCCcccccceeeecCce--eccceeEEeeCCcccccch
Q psy13345 145 YQKKKDKEA-KDKQEKEKIPPHDTSFINELQLSDFKQTLQRNGIDCEFMDGVLICCRGT--VAVRRVVLVSTPDMECGFS 221 (276)
Q Consensus 145 fsaHad~~~-l~~~i~~~~p~~v~lvHGE~~~~~Lk~~L~~~G~~aef~gg~l~~p~~~--~~i~~v~~~~~~~~~~g~s 221 (276)
|+.|-++-| ++..+++. ...+.++|. .+...-+...+.|+= .++...++.++.. .+-.++|+.++++ .|-.
T Consensus 231 fasnv~R~q~il~~a~~~--gr~v~v~gr-s~~~~~~~~~~~g~l-~~p~~~~v~~~~~~~~~~~~~vii~tgs--qGe~ 304 (555)
T 3zq4_A 231 FASNIHRLQQVIEAAVQN--GRKVAVFGR-SMESAIEIGQTLGYI-NCPKNTFIEHNEINRMPANKVTILCTGS--QGEP 304 (555)
T ss_dssp CTTCHHHHHHHHHHHHTT--TCEEEEESH-HHHHHHHHHHGGGSC-CCCGGGEECGGGTTTSCGGGEEEEECCT--TCCT
T ss_pred ChhHHHHHHHHHHHHHHH--CCEEEEeCH-HHHHHHHHHHHcCCc-cCCcccEeCHHHHhhCCCCCEEEEeCCC--CchH
Confidence 665555543 44444332 234667885 233333333444421 1222333333322 2223455455555 5667
Q ss_pred hhhhhhhcCCCCC--------eEEEeccCCCCCcc
Q psy13345 222 RDLFFQWCSSPEN--------SIIITNRNRADDSD 248 (276)
Q Consensus 222 r~lf~~~~~~~~n--------~~~~~~~~~~~~~~ 248 (276)
+.-|-+||.+++| +|+|+++..+|+..
T Consensus 305 ~~~L~r~a~~~~~~~~~~~~d~vi~s~~~ipGne~ 339 (555)
T 3zq4_A 305 MAALSRIANGTHRQISINPGDTVVFSSSPIPGNTI 339 (555)
T ss_dssp TSHHHHHHSSCCSSCCCCTTCEEEECSCCCTTCHH
T ss_pred HHHHHHHhcCCCCccccCCCCEEEEECCCCCCcHH
Confidence 8889999999887 99999999999764
No 20
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=57.13 E-value=14 Score=31.55 Aligned_cols=110 Identities=12% Similarity=0.170 Sum_probs=64.1
Q ss_pred CCCCCeEEEecCCCCCChhHHHHhcc--CCceEEEeeceEEe---eehh-hhhhhhhhcCchhhHHHHhhcCCCcceEEe
Q psy13345 97 SSPENSIIITNRTSPGTLARDLIELG--GNRTLTLQVKKRIR---LEGE-ELEEYQKKKDKEAKDKQEKEKIPPHDTSFI 170 (276)
Q Consensus 97 ~d~~N~Iiltgy~~~gTlgr~L~~~~--~~~~i~i~~~~~~~---l~~~-el~~fsaHad~~~l~~~i~~~~p~~v~lvH 170 (276)
.|...-|++.| .|.+|+.|.+.. ....+.+-.--... ..+. .+.+..-+ +.+++.+++++.....+++..
T Consensus 81 ~~~~~~V~IvG---aG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~-~~~dL~~~v~~~~Id~vIIAv 156 (212)
T 3keo_A 81 DHSTTNVMLVG---CGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVY-GISTINDHLIDSDIETAILTV 156 (212)
T ss_dssp TTSCEEEEEEC---CSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTCCBEE-EGGGHHHHC-CCSCCEEEECS
T ss_pred CCCCCEEEEEC---cCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECCeEEe-CHHHHHHHHHHcCCCEEEEec
Confidence 45556677777 466777776541 11223331000000 1111 22233333 256788888877777777766
Q ss_pred ChhhHHHHHHHHHHcCCCc--ccccceeeecCceeccceeEEe
Q psy13345 171 NELQLSDFKQTLQRNGIDC--EFMDGVLICCRGTVAVRRVVLV 211 (276)
Q Consensus 171 GE~~~~~Lk~~L~~~G~~a--ef~gg~l~~p~~~~~i~~v~~~ 211 (276)
-....++..+.+.+.|+++ .|+...+..|++ +.++.|-|+
T Consensus 157 Ps~~aq~v~d~lv~~GIk~I~nFap~~l~vp~~-v~v~~vdl~ 198 (212)
T 3keo_A 157 PSTEAQEVADILVKAGIKGILSFSPVHLTLPKD-IIVQYVDLT 198 (212)
T ss_dssp CGGGHHHHHHHHHHHTCCEEEECSSSCCCCCTT-SEEEECCHH
T ss_pred CchhHHHHHHHHHHcCCCEEEEcCCcccCCCCC-cEEEEeCcH
Confidence 5555678888999999986 577777777777 777777553
No 21
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=34.35 E-value=9.7 Score=22.86 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=12.1
Q ss_pred ccccchhhhhhhhcC
Q psy13345 216 MECGFSRDLFFQWCS 230 (276)
Q Consensus 216 ~~~g~sr~lf~~~~~ 230 (276)
+++|.+|+.+++|-.
T Consensus 17 L~SGlsKe~LiqaL~ 31 (32)
T 1g2y_A 17 LESGLSKEALIQALG 31 (32)
T ss_dssp HHTTCCHHHHHHHHC
T ss_pred HHcCCcHHHHHHHhc
Confidence 678999999888754
No 22
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503}
Probab=27.29 E-value=23 Score=29.98 Aligned_cols=44 Identities=16% Similarity=0.205 Sum_probs=35.9
Q ss_pred hhhcCchhhHHHHhhcCCCcceEEeCh-hhHHHHHHHHHHcCCCc
Q psy13345 146 QKKKDKEAKDKQEKEKIPPHDTSFINE-LQLSDFKQTLQRNGIDC 189 (276)
Q Consensus 146 saHad~~~l~~~i~~~~p~~v~lvHGE-~~~~~Lk~~L~~~G~~a 189 (276)
..|.+.++..++++.+.|++++.+|=. ...+.|++.+++.|+++
T Consensus 185 ~~h~~~~ea~~~~~~l~~k~vip~H~~~~~~~~~~~~l~~~gi~v 229 (235)
T 3kl7_A 185 PYTMTVSQAAKAARMFSPKILYPYHYGDTKIGELKDALKDSGIDV 229 (235)
T ss_dssp TTSCCHHHHHHHHHHHCCSEEEEESCTTCCTTHHHHHTTTSCCEE
T ss_pred CcccCHHHHHHHHHHcCCCEEEEEcCCCCCHHHHHHHHhhCCCEE
Confidence 358899999999999999999999966 55677888887766544
No 23
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=25.14 E-value=44 Score=20.22 Aligned_cols=17 Identities=12% Similarity=0.272 Sum_probs=14.6
Q ss_pred chHHHHHHHhCCCCCCe
Q psy13345 86 GFSRDLFFQWCSSPENS 102 (276)
Q Consensus 86 G~s~~~l~~~~~d~~N~ 102 (276)
|.+..++.+|+.+.+|.
T Consensus 15 Gvvl~L~d~WLn~r~~~ 31 (33)
T 2kv5_A 15 GLVLEMISRVLDEEDDS 31 (33)
T ss_dssp HHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHcccccc
Confidence 77889999999998763
Done!