Your job contains 1 sequence.
>psy13345
MSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKIEWMSDKLMKSFEGARNNPFHFKHVKL
CHSLAELAKVPSPKVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLIE
LGGNRTLTLQVKKRIRLEGEELEEYQKKKDKEAKDKQEKEKIPPHDTSFINELQLSDFKQ
TLQRNGIDCEFMDGVLICCRGTVAVRRVVLVSTPDMECGFSRDLFFQWCSSPENSIIITN
RNRADDSDSNVIVLEGCLSDEYYRVQQLLYDQYAIL
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy13345
(276 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-040718-79 - symbol:cpsf2 "cleavage and poly... 392 2.1e-54 3
FB|FBgn0027873 - symbol:Cpsf100 "Cleavage and polyadenyla... 382 1.3e-47 2
UNIPROTKB|Q10568 - symbol:CPSF2 "Cleavage and polyadenyla... 402 2.1e-47 2
RGD|1309687 - symbol:Cpsf2 "cleavage and polyadenylation ... 402 2.1e-47 2
UNIPROTKB|E2R496 - symbol:CPSF2 "Uncharacterized protein"... 401 2.6e-47 2
UNIPROTKB|Q9P2I0 - symbol:CPSF2 "Cleavage and polyadenyla... 401 2.6e-47 2
MGI|MGI:1861601 - symbol:Cpsf2 "cleavage and polyadenylat... 400 3.4e-47 2
UNIPROTKB|F1NMN0 - symbol:CPSF2 "Uncharacterized protein"... 398 5.6e-47 2
UNIPROTKB|Q9W799 - symbol:cpsf2 "Cleavage and polyadenyla... 396 1.2e-46 2
UNIPROTKB|F1SD85 - symbol:CPSF2 "Uncharacterized protein"... 362 3.2e-33 1
WB|WBGene00017313 - symbol:cpsf-2 species:6239 "Caenorhab... 288 3.7e-32 2
UNIPROTKB|O17403 - symbol:cpsf-2 "Probable cleavage and p... 288 3.7e-32 2
DICTYBASE|DDB_G0270392 - symbol:cpsf2 "cleavage and polya... 210 5.5e-29 3
TAIR|locus:2172843 - symbol:CPSF100 "cleavage and polyade... 219 8.6e-28 3
POMBASE|SPBC1709.15c - symbol:cft2 "cleavage factor two C... 124 1.3e-08 3
TAIR|locus:2206076 - symbol:CPSF73-I "cleavage and polyad... 146 2.2e-07 1
SGD|S000004267 - symbol:YSH1 "Putative endoribonuclease" ... 145 3.3e-07 1
UNIPROTKB|G5E9W3 - symbol:CPSF3 "Cleavage and polyadenyla... 143 4.4e-07 1
UNIPROTKB|P79101 - symbol:CPSF3 "Cleavage and polyadenyla... 143 4.8e-07 1
UNIPROTKB|Q9UKF6 - symbol:CPSF3 "Cleavage and polyadenyla... 143 4.8e-07 1
UNIPROTKB|F1NKW5 - symbol:CPSF3 "Uncharacterized protein"... 143 4.8e-07 1
UNIPROTKB|I3LKR1 - symbol:CPSF3 "Uncharacterized protein"... 143 4.8e-07 1
UNIPROTKB|E2R7R2 - symbol:CPSF3 "Uncharacterized protein"... 143 5.1e-07 1
ZFIN|ZDB-GENE-030131-3275 - symbol:cpsf3 "cleavage and po... 144 7.9e-07 2
FB|FBgn0261065 - symbol:Cpsf73 "Cleavage and polyadenylat... 140 1.1e-06 1
MGI|MGI:1859328 - symbol:Cpsf3 "cleavage and polyadenylat... 137 2.4e-06 1
RGD|1305767 - symbol:Cpsf3 "cleavage and polyadenylation ... 137 2.4e-06 1
UNIPROTKB|G3V6W7 - symbol:Cpsf3 "Protein Cpsf3" species:1... 137 2.4e-06 1
CGD|CAL0005344 - symbol:orf19.5486 species:5476 "Candida ... 138 2.5e-06 1
UNIPROTKB|Q59P50 - symbol:YSH1 "Endoribonuclease YSH1" sp... 138 2.5e-06 1
WB|WBGene00013460 - symbol:cpsf-3 species:6239 "Caenorhab... 137 2.5e-06 1
UNIPROTKB|H0YJF4 - symbol:CPSF2 "Cleavage and polyadenyla... 127 6.2e-06 1
UNIPROTKB|F1SD84 - symbol:LOC100625560 "Uncharacterized p... 127 8.5e-06 1
DICTYBASE|DDB_G0274799 - symbol:cpsf3 "cleavage and polya... 131 1.4e-05 1
POMBASE|SPAC17G6.16c - symbol:ysh1 "mRNA cleavage and pol... 127 3.8e-05 1
WB|WBGene00008642 - symbol:F10B5.8 species:6239 "Caenorha... 123 8.1e-05 1
CGD|CAL0004705 - symbol:orf19.325 species:5476 "Candida a... 108 0.00021 3
UNIPROTKB|Q5AEE3 - symbol:CFT2 "Putative uncharacterized ... 108 0.00021 3
UNIPROTKB|G4N6C6 - symbol:MGG_06570 "Uncharacterized prot... 86 0.00026 3
UNIPROTKB|F1RJE8 - symbol:CPSF3L "Uncharacterized protein... 118 0.00030 1
MGI|MGI:1919207 - symbol:Cpsf3l "cleavage and polyadenyla... 117 0.00038 1
RGD|1306841 - symbol:Cpsf3l "cleavage and polyadenylation... 117 0.00038 1
UNIPROTKB|E1B7Q9 - symbol:CPSF3L "Integrator complex subu... 116 0.00049 1
UNIPROTKB|Q2YDM2 - symbol:CPSF3L "Integrator complex subu... 116 0.00049 1
UNIPROTKB|F1NV30 - symbol:CPSF3L "Integrator complex subu... 115 0.00065 1
UNIPROTKB|Q5ZIH0 - symbol:CPSF3L "Integrator complex subu... 115 0.00065 1
UNIPROTKB|E2QY53 - symbol:CPSF3L "Uncharacterized protein... 115 0.00065 1
UNIPROTKB|Q5TA45 - symbol:CPSF3L "Integrator complex subu... 115 0.00065 1
UNIPROTKB|G3V1S5 - symbol:CPSF3L "Integrator complex subu... 115 0.00065 1
>ZFIN|ZDB-GENE-040718-79 [details] [associations]
symbol:cpsf2 "cleavage and polyadenylation specific
factor 2" species:7955 "Danio rerio" [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 ZFIN:ZDB-GENE-040718-79 GO:GO:0016787
eggNOG:COG1236 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 HOGENOM:HOG000264343 CTD:53981 HOVERGEN:HBG051106
OrthoDB:EOG4MCWZQ EMBL:BC076029 IPI:IPI00512505
RefSeq:NP_001002384.1 UniGene:Dr.121547 ProteinModelPortal:Q6DHE5
STRING:Q6DHE5 PRIDE:Q6DHE5 GeneID:436657 KEGG:dre:436657
InParanoid:Q6DHE5 NextBio:20831102 ArrayExpress:Q6DHE5 Bgee:Q6DHE5
Uniprot:Q6DHE5
Length = 790
Score = 392 (143.0 bits), Expect = 2.1e-54, Sum P(3) = 2.1e-54
Identities = 71/119 (59%), Positives = 94/119 (78%)
Query: 26 HSLAELAK--IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDM 83
+++ E +K +EWMSDKLM+ FE RNNPF F+H+ LCHSL++LA+VPSPKVVL S PD+
Sbjct: 274 YNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHSLSDLARVPSPKVVLCSQPDL 333
Query: 84 ECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLEGEEL 142
E GFSR+LF QWC +NS+I+T RT+PGTLAR LI+ G + + L+++KR RLEG EL
Sbjct: 334 ESGFSRELFIQWCQDAKNSVILTYRTTPGTLARYLIDNPGEKRIELEIRKRCRLEGREL 392
Score = 131 (51.2 bits), Expect = 1.3e-20, Sum P(3) = 1.3e-20
Identities = 22/34 (64%), Positives = 29/34 (85%)
Query: 1 MSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKI 34
MSDKLM+ FE RNNPF F+H+ LCHSL++LA++
Sbjct: 287 MSDKLMRCFEDKRNNPFQFRHLSLCHSLSDLARV 320
Score = 130 (50.8 bits), Expect = 2.1e-54, Sum P(3) = 2.1e-54
Identities = 27/46 (58%), Positives = 32/46 (69%)
Query: 162 IPPHDTSFINELQLSDFKQTLQRNGIDCEFMDGVLICCRGTVAVRR 207
+P H + FINE +LSDFKQ L R GI EF+ GVL+C VAVRR
Sbjct: 716 VPGHQSVFINEPRLSDFKQVLLREGIQAEFVGGVLVC-NNLVAVRR 760
Score = 120 (47.3 bits), Expect = 1.4e-19, Sum P(3) = 1.4e-19
Identities = 21/35 (60%), Positives = 27/35 (77%)
Query: 207 RVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNR 241
+VVL S PD+E GFSR+LF QWC +NS+I+T R
Sbjct: 324 KVVLCSQPDLESGFSRELFIQWCQDAKNSVILTYR 358
Score = 94 (38.1 bits), Expect = 2.1e-54, Sum P(3) = 2.1e-54
Identities = 15/30 (50%), Positives = 25/30 (83%)
Query: 247 SDSNVIVLEGCLSDEYYRVQQLLYDQYAIL 276
+++ I LEGC D+YYR+++LLY+QYA++
Sbjct: 761 TEAGRICLEGCHCDDYYRIRELLYEQYAVV 790
>FB|FBgn0027873 [details] [associations]
symbol:Cpsf100 "Cleavage and polyadenylation specificity
factor 100" species:7227 "Drosophila melanogaster" [GO:0006379
"mRNA cleavage" evidence=ISS;NAS] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS;IMP;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=NAS] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006398 "histone mRNA 3'-end
processing" evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 EMBL:AE014297 GO:GO:0022008 GO:GO:0006378
GO:GO:0003723 GO:GO:0016787 GO:GO:0005847 GO:GO:0006379
eggNOG:COG1236 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 GeneTree:ENSGT00700000104551 OMA:NNPFQFK
GO:GO:0006398 EMBL:AF160933 RefSeq:NP_651658.1 RefSeq:NP_733264.1
UniGene:Dm.1362 ProteinModelPortal:Q9V3D6 SMR:Q9V3D6 IntAct:Q9V3D6
STRING:Q9V3D6 PaxDb:Q9V3D6 PRIDE:Q9V3D6 EnsemblMetazoa:FBtr0085357
GeneID:43426 KEGG:dme:Dmel_CG1957 UCSC:CG1957-RA CTD:43426
FlyBase:FBgn0027873 InParanoid:Q8IML7 OrthoDB:EOG4XD261
PhylomeDB:Q9V3D6 GenomeRNAi:43426 NextBio:833860 Bgee:Q9V3D6
GermOnline:CG1957 Uniprot:Q9V3D6
Length = 756
Score = 382 (139.5 bits), Expect = 1.3e-47, Sum P(2) = 1.3e-47
Identities = 74/121 (61%), Positives = 95/121 (78%)
Query: 26 HSLAELAK--IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPS-PKVVLVSTPD 82
+++ E AK IEWMSDKL K+FEGARNNPF FKH++LCHSLA++ K+P+ PKVVL STPD
Sbjct: 274 YNVIEFAKSQIEWMSDKLTKAFEGARNNPFQFKHIQLCHSLADVYKLPAGPKVVLASTPD 333
Query: 83 MECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLIE-LGGNRTLTLQVKKRIRLEGEE 141
+E GF+RDLF QW S+ NSII+T RTSPGTLA +L+E + + L V++R+ LEG E
Sbjct: 334 LESGFTRDLFVQWASNANNSIILTTRTSPGTLAMELVENCAPGKQIELDVRRRVDLEGAE 393
Query: 142 L 142
L
Sbjct: 394 L 394
Score = 149 (57.5 bits), Expect = 1.3e-47, Sum P(2) = 1.3e-47
Identities = 30/47 (63%), Positives = 36/47 (76%)
Query: 162 IPPHDTSFINELQLSDFKQTLQRNGIDCEFMDGVLICCRGTVAVRRV 208
IP H++ INEL+LSDFKQTL RN I+ EF GVL C GT+A+RRV
Sbjct: 681 IPIHNSVLINELKLSDFKQTLMRNNINSEFSGGVLWCSNGTLALRRV 727
Score = 144 (55.7 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 25/34 (73%), Positives = 31/34 (91%)
Query: 1 MSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKI 34
MSDKL K+FEGARNNPF FKH++LCHSLA++ K+
Sbjct: 287 MSDKLTKAFEGARNNPFQFKHIQLCHSLADVYKL 320
Score = 125 (49.1 bits), Expect = 6.3e-16, Sum P(2) = 6.3e-16
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 207 RVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNR 241
+VVL STPD+E GF+RDLF QW S+ NSII+T R
Sbjct: 325 KVVLASTPDLESGFTRDLFVQWASNANNSIILTTR 359
Score = 107 (42.7 bits), Expect = 3.3e-43, Sum P(2) = 3.3e-43
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 228 WCSSPENSIIITNRNRADDSDSNVIVLEGCLSDEYYRVQQLLYDQYAIL 276
WCS N + R D+ + +EGCLS+EYY++++LLY+QYAI+
Sbjct: 716 WCS---NGTLALRR-----VDAGKVAMEGCLSEEYYKIRELLYEQYAIV 756
>UNIPROTKB|Q10568 [details] [associations]
symbol:CPSF2 "Cleavage and polyadenylation specificity
factor subunit 2" species:9913 "Bos taurus" [GO:0006398 "histone
mRNA 3'-end processing" evidence=ISS] [GO:0005847 "mRNA cleavage
and polyadenylation specificity factor complex" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IEA] InterPro:IPR001279
InterPro:IPR027075 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0003723 GO:GO:0016787 GO:GO:0005847 eggNOG:COG1236 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 InterPro:IPR011108
PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 HOGENOM:HOG000264343 OMA:NNPFQFK
EMBL:X75931 IPI:IPI00688446 PIR:A56351 RefSeq:NP_787002.1
UniGene:Bt.4077 ProteinModelPortal:Q10568 STRING:Q10568
PRIDE:Q10568 Ensembl:ENSBTAT00000013500 GeneID:327689
KEGG:bta:327689 CTD:53981 HOVERGEN:HBG051106 InParanoid:Q10568
OrthoDB:EOG4MCWZQ NextBio:20810154 GO:GO:0006398 Uniprot:Q10568
Length = 782
Score = 402 (146.6 bits), Expect = 2.1e-47, Sum P(2) = 2.1e-47
Identities = 71/119 (59%), Positives = 95/119 (79%)
Query: 26 HSLAELAK--IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDM 83
+++ E +K +EWMSDKLM+ FE RNNPF F+H+ LCH L++LA+VPSPKVVL S PD+
Sbjct: 274 YNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDL 333
Query: 84 ECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLEGEEL 142
ECGFSRDLF QWC P+NSII+T RT+PGTLAR LI+ + ++++KR++LEG+EL
Sbjct: 334 ECGFSRDLFIQWCQDPKNSIILTYRTTPGTLARFLIDNPSEKVTEIELRKRVKLEGKEL 392
Score = 144 (55.7 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
Identities = 25/35 (71%), Positives = 29/35 (82%)
Query: 207 RVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNR 241
+VVL S PD+ECGFSRDLF QWC P+NSII+T R
Sbjct: 324 KVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYR 358
Score = 127 (49.8 bits), Expect = 2.1e-47, Sum P(2) = 2.1e-47
Identities = 26/46 (56%), Positives = 32/46 (69%)
Query: 162 IPPHDTSFINELQLSDFKQTLQRNGIDCEFMDGVLICCRGTVAVRR 207
+P H + F+NE +LSDFKQ L R GI EF+ GVL+C VAVRR
Sbjct: 708 VPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVC-NNQVAVRR 752
Score = 127 (49.8 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
Identities = 21/34 (61%), Positives = 28/34 (82%)
Query: 1 MSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKI 34
MSDKLM+ FE RNNPF F+H+ LCH L++LA++
Sbjct: 287 MSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARV 320
Score = 91 (37.1 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 236 IIITNRNRADDSDSNVIVLEGCLSDEYYRVQQLLYDQYAIL 276
++ N+ +++ I LEGCL ++YR++ LLY+QYAI+
Sbjct: 742 LVCNNQVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>RGD|1309687 [details] [associations]
symbol:Cpsf2 "cleavage and polyadenylation specific factor 2,
100kDa" species:10116 "Rattus norvegicus" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IEA;ISO] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006398 "histone mRNA
3'-end processing" evidence=IEA;ISO] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001279 InterPro:IPR027075
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 RGD:1309687 GO:GO:0016787
EMBL:CH473982 GO:GO:0005847 KO:K14402 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 OMA:NNPFQFK CTD:53981
OrthoDB:EOG4MCWZQ GO:GO:0006398 IPI:IPI00189534
RefSeq:NP_001100223.1 UniGene:Rn.8038 Ensembl:ENSRNOT00000008612
GeneID:299256 KEGG:rno:299256 UCSC:RGD:1309687 NextBio:645098
Uniprot:D3Z9E6
Length = 782
Score = 402 (146.6 bits), Expect = 2.1e-47, Sum P(2) = 2.1e-47
Identities = 71/119 (59%), Positives = 95/119 (79%)
Query: 26 HSLAELAK--IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDM 83
+++ E +K +EWMSDKLM+ FE RNNPF F+H+ LCH L++LA+VPSPKVVL S PD+
Sbjct: 274 YNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDL 333
Query: 84 ECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLEGEEL 142
ECGFSRDLF QWC P+NSII+T RT+PGTLAR LI+ + ++++KR++LEG+EL
Sbjct: 334 ECGFSRDLFIQWCQDPKNSIILTYRTTPGTLARFLIDNPSEKVTEIELRKRVKLEGKEL 392
Score = 144 (55.7 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
Identities = 25/35 (71%), Positives = 29/35 (82%)
Query: 207 RVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNR 241
+VVL S PD+ECGFSRDLF QWC P+NSII+T R
Sbjct: 324 KVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYR 358
Score = 127 (49.8 bits), Expect = 2.1e-47, Sum P(2) = 2.1e-47
Identities = 26/46 (56%), Positives = 32/46 (69%)
Query: 162 IPPHDTSFINELQLSDFKQTLQRNGIDCEFMDGVLICCRGTVAVRR 207
+P H + F+NE +LSDFKQ L R GI EF+ GVL+C VAVRR
Sbjct: 708 VPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVC-NNQVAVRR 752
Score = 127 (49.8 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
Identities = 21/34 (61%), Positives = 28/34 (82%)
Query: 1 MSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKI 34
MSDKLM+ FE RNNPF F+H+ LCH L++LA++
Sbjct: 287 MSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARV 320
Score = 91 (37.1 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 236 IIITNRNRADDSDSNVIVLEGCLSDEYYRVQQLLYDQYAIL 276
++ N+ +++ I LEGCL ++YR++ LLY+QYAI+
Sbjct: 742 LVCNNQVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>UNIPROTKB|E2R496 [details] [associations]
symbol:CPSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006398 "histone mRNA 3'-end processing"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IEA] InterPro:IPR001279
InterPro:IPR027075 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 GO:GO:0005847 KO:K14402 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 OMA:NNPFQFK CTD:53981 GO:GO:0006398
EMBL:AAEX03005582 RefSeq:XP_537353.2 ProteinModelPortal:E2R496
Ensembl:ENSCAFT00000017381 GeneID:480230 KEGG:cfa:480230
NextBio:20855279 Uniprot:E2R496
Length = 782
Score = 401 (146.2 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 71/119 (59%), Positives = 95/119 (79%)
Query: 26 HSLAELAK--IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDM 83
+++ E +K +EWMSDKLM+ FE RNNPF F+H+ LCH L++LA+VPSPKVVL S PD+
Sbjct: 274 YNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDL 333
Query: 84 ECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLEGEEL 142
ECGFSRDLF QWC P+NSII+T RT+PGTLAR LI+ + ++++KR++LEG+EL
Sbjct: 334 ECGFSRDLFIQWCQDPKNSIILTYRTTPGTLARFLIDNPSEKITEIELRKRVKLEGKEL 392
Score = 144 (55.7 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
Identities = 25/35 (71%), Positives = 29/35 (82%)
Query: 207 RVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNR 241
+VVL S PD+ECGFSRDLF QWC P+NSII+T R
Sbjct: 324 KVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYR 358
Score = 127 (49.8 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 26/46 (56%), Positives = 32/46 (69%)
Query: 162 IPPHDTSFINELQLSDFKQTLQRNGIDCEFMDGVLICCRGTVAVRR 207
+P H + F+NE +LSDFKQ L R GI EF+ GVL+C VAVRR
Sbjct: 708 VPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVC-NNQVAVRR 752
Score = 127 (49.8 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
Identities = 21/34 (61%), Positives = 28/34 (82%)
Query: 1 MSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKI 34
MSDKLM+ FE RNNPF F+H+ LCH L++LA++
Sbjct: 287 MSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARV 320
Score = 91 (37.1 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 236 IIITNRNRADDSDSNVIVLEGCLSDEYYRVQQLLYDQYAIL 276
++ N+ +++ I LEGCL ++YR++ LLY+QYAI+
Sbjct: 742 LVCNNQVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>UNIPROTKB|Q9P2I0 [details] [associations]
symbol:CPSF2 "Cleavage and polyadenylation specificity
factor subunit 2" species:9606 "Homo sapiens" [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006398 "histone mRNA 3'-end processing"
evidence=IDA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] Reactome:REACT_71 InterPro:IPR001279
InterPro:IPR027075 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
EMBL:CH471061 Reactome:REACT_1675 GO:GO:0003723 GO:GO:0016787
GO:GO:0006406 GO:GO:0000398 Reactome:REACT_1788 GO:GO:0005847
GO:GO:0006369 eggNOG:COG1236 KO:K14402 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027 Reactome:REACT_78
HOGENOM:HOG000264343 OMA:NNPFQFK CTD:53981 HOVERGEN:HBG051106
OrthoDB:EOG4MCWZQ GO:GO:0006398 EMBL:AK001627 EMBL:BC070095
EMBL:AB037788 EMBL:AL442079 IPI:IPI00419531 RefSeq:NP_059133.1
UniGene:Hs.657632 UniGene:Hs.736541 ProteinModelPortal:Q9P2I0
SMR:Q9P2I0 DIP:DIP-42500N IntAct:Q9P2I0 MINT:MINT-1697677
STRING:Q9P2I0 PhosphoSite:Q9P2I0 DMDM:51338827 PaxDb:Q9P2I0
PeptideAtlas:Q9P2I0 PRIDE:Q9P2I0 Ensembl:ENST00000298875
GeneID:53981 KEGG:hsa:53981 UCSC:uc001yah.2 GeneCards:GC14P092588
HGNC:HGNC:2325 HPA:HPA024238 MIM:606028 neXtProt:NX_Q9P2I0
PharmGKB:PA26842 InParanoid:Q9P2I0 PhylomeDB:Q9P2I0 ChiTaRS:CPSF2
GenomeRNAi:53981 NextBio:56268 ArrayExpress:Q9P2I0 Bgee:Q9P2I0
CleanEx:HS_CPSF2 Genevestigator:Q9P2I0 GermOnline:ENSG00000165934
Uniprot:Q9P2I0
Length = 782
Score = 401 (146.2 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 71/119 (59%), Positives = 95/119 (79%)
Query: 26 HSLAELAK--IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDM 83
+++ E +K +EWMSDKLM+ FE RNNPF F+H+ LCH L++LA+VPSPKVVL S PD+
Sbjct: 274 YNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDL 333
Query: 84 ECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLEGEEL 142
ECGFSRDLF QWC P+NSII+T RT+PGTLAR LI+ + ++++KR++LEG+EL
Sbjct: 334 ECGFSRDLFIQWCQDPKNSIILTYRTTPGTLARFLIDNPSEKITEIELRKRVKLEGKEL 392
Score = 144 (55.7 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
Identities = 25/35 (71%), Positives = 29/35 (82%)
Query: 207 RVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNR 241
+VVL S PD+ECGFSRDLF QWC P+NSII+T R
Sbjct: 324 KVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYR 358
Score = 127 (49.8 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 26/46 (56%), Positives = 32/46 (69%)
Query: 162 IPPHDTSFINELQLSDFKQTLQRNGIDCEFMDGVLICCRGTVAVRR 207
+P H + F+NE +LSDFKQ L R GI EF+ GVL+C VAVRR
Sbjct: 708 VPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVC-NNQVAVRR 752
Score = 127 (49.8 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
Identities = 21/34 (61%), Positives = 28/34 (82%)
Query: 1 MSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKI 34
MSDKLM+ FE RNNPF F+H+ LCH L++LA++
Sbjct: 287 MSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARV 320
Score = 91 (37.1 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 236 IIITNRNRADDSDSNVIVLEGCLSDEYYRVQQLLYDQYAIL 276
++ N+ +++ I LEGCL ++YR++ LLY+QYAI+
Sbjct: 742 LVCNNQVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>MGI|MGI:1861601 [details] [associations]
symbol:Cpsf2 "cleavage and polyadenylation specific factor
2" species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006398 "histone
mRNA 3'-end processing" evidence=ISO] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001279 InterPro:IPR027075
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 MGI:MGI:1861601
GO:GO:0003723 GO:GO:0016787 GO:GO:0005847 eggNOG:COG1236 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 InterPro:IPR011108
PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 HOGENOM:HOG000264343 OMA:NNPFQFK
CTD:53981 HOVERGEN:HBG051106 OrthoDB:EOG4MCWZQ GO:GO:0006398
EMBL:AF012822 EMBL:BC013628 EMBL:BC007163 IPI:IPI00314302
RefSeq:NP_058552.1 UniGene:Mm.716 ProteinModelPortal:O35218
SMR:O35218 STRING:O35218 PhosphoSite:O35218 PaxDb:O35218
PRIDE:O35218 Ensembl:ENSMUST00000047357 GeneID:51786 KEGG:mmu:51786
UCSC:uc007otx.2 InParanoid:O35218 NextBio:308008 Bgee:O35218
CleanEx:MM_CPSF2 Genevestigator:O35218
GermOnline:ENSMUSG00000041781 Uniprot:O35218
Length = 782
Score = 400 (145.9 bits), Expect = 3.4e-47, Sum P(2) = 3.4e-47
Identities = 71/119 (59%), Positives = 95/119 (79%)
Query: 26 HSLAELAK--IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDM 83
+++ E +K +EWMSDKLM+ FE RNNPF F+H+ LCH L++LA+VPSPKVVL S PD+
Sbjct: 274 YNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDL 333
Query: 84 ECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLEGEEL 142
ECGFSRDLF QWC P+NSII+T RT+PGTLAR LI+ + ++++KR++LEG+EL
Sbjct: 334 ECGFSRDLFIQWCQDPKNSIILTYRTTPGTLARFLIDNPTEKVTEIELRKRVKLEGKEL 392
Score = 144 (55.7 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
Identities = 25/35 (71%), Positives = 29/35 (82%)
Query: 207 RVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNR 241
+VVL S PD+ECGFSRDLF QWC P+NSII+T R
Sbjct: 324 KVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYR 358
Score = 127 (49.8 bits), Expect = 3.4e-47, Sum P(2) = 3.4e-47
Identities = 26/46 (56%), Positives = 32/46 (69%)
Query: 162 IPPHDTSFINELQLSDFKQTLQRNGIDCEFMDGVLICCRGTVAVRR 207
+P H + F+NE +LSDFKQ L R GI EF+ GVL+C VAVRR
Sbjct: 708 VPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVC-NNQVAVRR 752
Score = 127 (49.8 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
Identities = 21/34 (61%), Positives = 28/34 (82%)
Query: 1 MSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKI 34
MSDKLM+ FE RNNPF F+H+ LCH L++LA++
Sbjct: 287 MSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARV 320
Score = 91 (37.1 bits), Expect = 2.1e-43, Sum P(2) = 2.1e-43
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 236 IIITNRNRADDSDSNVIVLEGCLSDEYYRVQQLLYDQYAIL 276
++ N+ +++ I LEGCL ++YR++ LLY+QYAI+
Sbjct: 742 LVCNNQVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>UNIPROTKB|F1NMN0 [details] [associations]
symbol:CPSF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0006398 "histone mRNA 3'-end processing" evidence=IEA]
InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0016787 GO:GO:0005847 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 OMA:NNPFQFK GO:GO:0006398
EMBL:AADN02003653 IPI:IPI00651282 Ensembl:ENSGALT00000017538
Uniprot:F1NMN0
Length = 782
Score = 398 (145.2 bits), Expect = 5.6e-47, Sum P(2) = 5.6e-47
Identities = 70/119 (58%), Positives = 96/119 (80%)
Query: 26 HSLAELAK--IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDM 83
+++ E +K +EWMSDKLM+ FE RNNPF F+H+ LCHSL++LA+VPSPKVVL S PD+
Sbjct: 274 YNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHSLSDLARVPSPKVVLASQPDL 333
Query: 84 ECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLEGEEL 142
ECGFSRDLF QWC +NSII+T RT+PGTLAR LI+ + + +++++R++LEG+EL
Sbjct: 334 ECGFSRDLFIQWCQDSKNSIILTYRTTPGTLARFLIDNPSEKVIDIELRRRVKLEGKEL 392
Score = 136 (52.9 bits), Expect = 9.5e-21, Sum P(3) = 9.5e-21
Identities = 24/35 (68%), Positives = 28/35 (80%)
Query: 207 RVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNR 241
+VVL S PD+ECGFSRDLF QWC +NSII+T R
Sbjct: 324 KVVLASQPDLECGFSRDLFIQWCQDSKNSIILTYR 358
Score = 131 (51.2 bits), Expect = 9.5e-21, Sum P(3) = 9.5e-21
Identities = 22/34 (64%), Positives = 29/34 (85%)
Query: 1 MSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKI 34
MSDKLM+ FE RNNPF F+H+ LCHSL++LA++
Sbjct: 287 MSDKLMRCFEDKRNNPFQFRHLSLCHSLSDLARV 320
Score = 127 (49.8 bits), Expect = 5.6e-47, Sum P(2) = 5.6e-47
Identities = 26/46 (56%), Positives = 32/46 (69%)
Query: 162 IPPHDTSFINELQLSDFKQTLQRNGIDCEFMDGVLICCRGTVAVRR 207
+P H + F+NE +LSDFKQ L R GI EF+ GVL+C VAVRR
Sbjct: 708 VPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVC-NNMVAVRR 752
Score = 88 (36.0 bits), Expect = 7.1e-43, Sum P(2) = 7.1e-43
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 236 IIITNRNRADDSDSNVIVLEGCLSDEYYRVQQLLYDQYAIL 276
++ N +++ I LEGCL ++YR+++LLY QYAI+
Sbjct: 742 LVCNNMVAVRRTETGRIGLEGCLCQDFYRIRELLYKQYAIV 782
>UNIPROTKB|Q9W799 [details] [associations]
symbol:cpsf2 "Cleavage and polyadenylation specificity
factor subunit 2" species:8355 "Xenopus laevis" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0005737 GO:GO:0006397
GO:GO:0003723 GO:GO:0016787 GO:GO:0005847 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 InterPro:IPR011108
PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299 SMART:SM01027
CTD:53981 HOVERGEN:HBG051106 EMBL:AF139986 RefSeq:NP_001081123.1
UniGene:Xl.3876 ProteinModelPortal:Q9W799 GeneID:394394
KEGG:xla:394394 Xenbase:XB-GENE-950598 Uniprot:Q9W799
Length = 783
Score = 396 (144.5 bits), Expect = 1.2e-46, Sum P(2) = 1.2e-46
Identities = 69/119 (57%), Positives = 95/119 (79%)
Query: 26 HSLAELAK--IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDM 83
+++ E +K +EWMSDKLM+ FE RNNPF F+H+ LCH ++LA+VPSPKVVL S PD+
Sbjct: 274 YNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLTLCHGYSDLARVPSPKVVLASQPDL 333
Query: 84 ECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLEGEEL 142
ECGFSR+LF QWC P+NS+I+T RT+PGTLAR LI+ R + ++++KR++LEG+EL
Sbjct: 334 ECGFSRELFIQWCQDPKNSVILTYRTTPGTLARFLIDHPSERIIDIELRKRVKLEGKEL 392
Score = 139 (54.0 bits), Expect = 6.6e-20, Sum P(3) = 6.6e-20
Identities = 23/35 (65%), Positives = 29/35 (82%)
Query: 207 RVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNR 241
+VVL S PD+ECGFSR+LF QWC P+NS+I+T R
Sbjct: 324 KVVLASQPDLECGFSRELFIQWCQDPKNSVILTYR 358
Score = 126 (49.4 bits), Expect = 1.2e-46, Sum P(2) = 1.2e-46
Identities = 26/46 (56%), Positives = 32/46 (69%)
Query: 162 IPPHDTSFINELQLSDFKQTLQRNGIDCEFMDGVLICCRGTVAVRR 207
+P H + F+NE +LSDFKQ L R GI EF+ GVL+C VAVRR
Sbjct: 709 VPGHQSVFMNEPRLSDFKQVLLREGIHAEFVGGVLVC-NNMVAVRR 753
Score = 121 (47.7 bits), Expect = 6.6e-20, Sum P(3) = 6.6e-20
Identities = 20/34 (58%), Positives = 27/34 (79%)
Query: 1 MSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKI 34
MSDKLM+ FE RNNPF F+H+ LCH ++LA++
Sbjct: 287 MSDKLMRCFEDKRNNPFQFRHLTLCHGYSDLARV 320
Score = 86 (35.3 bits), Expect = 1.9e-42, Sum P(2) = 1.9e-42
Identities = 14/41 (34%), Positives = 29/41 (70%)
Query: 236 IIITNRNRADDSDSNVIVLEGCLSDEYYRVQQLLYDQYAIL 276
++ N +++ I LEGCL ++++++++LLY+QYAI+
Sbjct: 743 LVCNNMVAVRRTETGRIGLEGCLCEDFFKIRELLYEQYAIV 783
>UNIPROTKB|F1SD85 [details] [associations]
symbol:CPSF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006379
"mRNA cleavage" evidence=IEA] [GO:0006378 "mRNA polyadenylation"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IEA] InterPro:IPR001279
InterPro:IPR027075 Pfam:PF00753 SMART:SM00849 GO:GO:0016787
InterPro:IPR022712 PANTHER:PTHR11203:SF5 Pfam:PF10996 SMART:SM01027
GeneTree:ENSGT00700000104551 EMBL:CU468363
Ensembl:ENSSSCT00000002717 OMA:GANDESP Uniprot:F1SD85
Length = 385
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 65/108 (60%), Positives = 84/108 (77%)
Query: 26 HSLAELAK--IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDM 83
+++ E +K +EWMSDKLM+ FE RNNPF F+H+ LCH L++LA+VPSPKVVL S PD+
Sbjct: 274 YNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDL 333
Query: 84 ECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQV 131
ECGFSRDLF QWC P+NSII+T RT+PGTLAR LI+ + ++V
Sbjct: 334 ECGFSRDLFIQWCQDPKNSIILTYRTTPGTLARFLIDNPSEKITEIEV 381
Score = 144 (55.7 bits), Expect = 4.7e-17, Sum P(2) = 4.7e-17
Identities = 25/35 (71%), Positives = 29/35 (82%)
Query: 207 RVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNR 241
+VVL S PD+ECGFSRDLF QWC P+NSII+T R
Sbjct: 324 KVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYR 358
Score = 127 (49.8 bits), Expect = 4.7e-17, Sum P(2) = 4.7e-17
Identities = 21/34 (61%), Positives = 28/34 (82%)
Query: 1 MSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKI 34
MSDKLM+ FE RNNPF F+H+ LCH L++LA++
Sbjct: 287 MSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARV 320
>WB|WBGene00017313 [details] [associations]
symbol:cpsf-2 species:6239 "Caenorhabditis elegans"
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0051301 "cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0016246
"RNA interference" evidence=IMP] [GO:0040027 "negative regulation
of vulval development" evidence=IMP] InterPro:IPR001279
InterPro:IPR027075 SMART:SM00849 Pfam:PF07521 GO:GO:0005634
GO:GO:0009792 GO:GO:0016246 GO:GO:0006397 GO:GO:0003723
GO:GO:0016787 GO:GO:0000910 GO:GO:0040035 GO:GO:0040027
eggNOG:COG1236 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 GeneTree:ENSGT00700000104551 HOGENOM:HOG000264343
OMA:NNPFQFK EMBL:FO080529 PIR:T32487 RefSeq:NP_504822.1
ProteinModelPortal:O17403 SMR:O17403 STRING:O17403 PaxDb:O17403
EnsemblMetazoa:F09G2.4 GeneID:179103 KEGG:cel:CELE_F09G2.4
CTD:179103 WormBase:F09G2.4 InParanoid:O17403 NextBio:903938
Uniprot:O17403
Length = 843
Score = 288 (106.4 bits), Expect = 3.7e-32, Sum P(2) = 3.7e-32
Identities = 65/129 (50%), Positives = 82/129 (63%)
Query: 27 SLAELAK--IEWMSDKLMK-SFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDM 83
S+ + AK +EWM++KL K AR NPF KHV LCHS EL +V SPKVVL S+ DM
Sbjct: 274 SVVQFAKSQLEWMNEKLFKYDSSSARYNPFTLKHVTLCHSHQELMRVRSPKVVLCSSQDM 333
Query: 84 ECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLIELG-----G-----NRTLTLQVKK 133
E GFSR+LF WCS P N +I+T R + TLA L+ + G +R ++L VKK
Sbjct: 334 ESGFSRELFLDWCSDPRNGVILTARPASFTLAAKLVNMAERANDGVLKHEDRLISLVVKK 393
Query: 134 RIRLEGEEL 142
R+ LEGEEL
Sbjct: 394 RVALEGEEL 402
Score = 119 (46.9 bits), Expect = 5.6e-13, Sum P(3) = 5.6e-13
Identities = 21/35 (60%), Positives = 26/35 (74%)
Query: 207 RVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNR 241
+VVL S+ DME GFSR+LF WCS P N +I+T R
Sbjct: 324 KVVLCSSQDMESGFSRELFLDWCSDPRNGVILTAR 358
Score = 101 (40.6 bits), Expect = 3.7e-32, Sum P(2) = 3.7e-32
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 162 IPPHDTSFINELQLSDFKQTLQRNGIDCEFMDGVLICCRGTVAVRRVVLVSTPDMECGFS 221
IP H F+N+ +LSDFK L G EF+ G L+ G ++RR ME F+
Sbjct: 768 IPIHQAVFVNDPKLSDFKNLLTDKGYKAEFLSGTLLINGGNCSIRRND-TGVFQMEGAFT 826
Query: 222 RDLF 225
+D +
Sbjct: 827 KDYY 830
Score = 85 (35.0 bits), Expect = 5.6e-13, Sum P(3) = 5.6e-13
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 1 MSDKLMK-SFEGARNNPFHFKHVKLCHSLAELAKI 34
M++KL K AR NPF KHV LCHS EL ++
Sbjct: 286 MNEKLFKYDSSSARYNPFTLKHVTLCHSHQELMRV 320
Score = 80 (33.2 bits), Expect = 5.8e-30, Sum P(2) = 5.8e-30
Identities = 12/30 (40%), Positives = 23/30 (76%)
Query: 247 SDSNVIVLEGCLSDEYYRVQQLLYDQYAIL 276
+D+ V +EG + +YY++++L YDQ+A+L
Sbjct: 814 NDTGVFQMEGAFTKDYYKLRRLFYDQFAVL 843
Score = 37 (18.1 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 38 SDKLMKSFEGARNNPFHF 55
S+K +SF+G+ N+ F
Sbjct: 450 SEKDFRSFDGSENDAHTF 467
>UNIPROTKB|O17403 [details] [associations]
symbol:cpsf-2 "Probable cleavage and polyadenylation
specificity factor subunit 2" species:6239 "Caenorhabditis elegans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR001279
InterPro:IPR027075 SMART:SM00849 Pfam:PF07521 GO:GO:0005634
GO:GO:0009792 GO:GO:0016246 GO:GO:0006397 GO:GO:0003723
GO:GO:0016787 GO:GO:0000910 GO:GO:0040035 GO:GO:0040027
eggNOG:COG1236 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 GeneTree:ENSGT00700000104551 HOGENOM:HOG000264343
OMA:NNPFQFK EMBL:FO080529 PIR:T32487 RefSeq:NP_504822.1
ProteinModelPortal:O17403 SMR:O17403 STRING:O17403 PaxDb:O17403
EnsemblMetazoa:F09G2.4 GeneID:179103 KEGG:cel:CELE_F09G2.4
CTD:179103 WormBase:F09G2.4 InParanoid:O17403 NextBio:903938
Uniprot:O17403
Length = 843
Score = 288 (106.4 bits), Expect = 3.7e-32, Sum P(2) = 3.7e-32
Identities = 65/129 (50%), Positives = 82/129 (63%)
Query: 27 SLAELAK--IEWMSDKLMK-SFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDM 83
S+ + AK +EWM++KL K AR NPF KHV LCHS EL +V SPKVVL S+ DM
Sbjct: 274 SVVQFAKSQLEWMNEKLFKYDSSSARYNPFTLKHVTLCHSHQELMRVRSPKVVLCSSQDM 333
Query: 84 ECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLIELG-----G-----NRTLTLQVKK 133
E GFSR+LF WCS P N +I+T R + TLA L+ + G +R ++L VKK
Sbjct: 334 ESGFSRELFLDWCSDPRNGVILTARPASFTLAAKLVNMAERANDGVLKHEDRLISLVVKK 393
Query: 134 RIRLEGEEL 142
R+ LEGEEL
Sbjct: 394 RVALEGEEL 402
Score = 119 (46.9 bits), Expect = 5.6e-13, Sum P(3) = 5.6e-13
Identities = 21/35 (60%), Positives = 26/35 (74%)
Query: 207 RVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNR 241
+VVL S+ DME GFSR+LF WCS P N +I+T R
Sbjct: 324 KVVLCSSQDMESGFSRELFLDWCSDPRNGVILTAR 358
Score = 101 (40.6 bits), Expect = 3.7e-32, Sum P(2) = 3.7e-32
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 162 IPPHDTSFINELQLSDFKQTLQRNGIDCEFMDGVLICCRGTVAVRRVVLVSTPDMECGFS 221
IP H F+N+ +LSDFK L G EF+ G L+ G ++RR ME F+
Sbjct: 768 IPIHQAVFVNDPKLSDFKNLLTDKGYKAEFLSGTLLINGGNCSIRRND-TGVFQMEGAFT 826
Query: 222 RDLF 225
+D +
Sbjct: 827 KDYY 830
Score = 85 (35.0 bits), Expect = 5.6e-13, Sum P(3) = 5.6e-13
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 1 MSDKLMK-SFEGARNNPFHFKHVKLCHSLAELAKI 34
M++KL K AR NPF KHV LCHS EL ++
Sbjct: 286 MNEKLFKYDSSSARYNPFTLKHVTLCHSHQELMRV 320
Score = 80 (33.2 bits), Expect = 5.8e-30, Sum P(2) = 5.8e-30
Identities = 12/30 (40%), Positives = 23/30 (76%)
Query: 247 SDSNVIVLEGCLSDEYYRVQQLLYDQYAIL 276
+D+ V +EG + +YY++++L YDQ+A+L
Sbjct: 814 NDTGVFQMEGAFTKDYYKLRRLFYDQFAVL 843
Score = 37 (18.1 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 38 SDKLMKSFEGARNNPFHF 55
S+K +SF+G+ N+ F
Sbjct: 450 SEKDFRSFDGSENDAHTF 467
>DICTYBASE|DDB_G0270392 [details] [associations]
symbol:cpsf2 "cleavage and polyadenylation
specificity factor 100 kDa subunit" species:44689 "Dictyostelium
discoideum" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA;ISS] [GO:0006378 "mRNA
polyadenylation" evidence=IEA;ISS] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA;ISS]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753 SMART:SM00849
dictyBase:DDB_G0270392 Pfam:PF07521 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0006378 GO:GO:0003723 GO:GO:0016787
GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 InterPro:IPR011108
PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299 SMART:SM01027
OMA:NNPFQFK RefSeq:XP_646760.1 ProteinModelPortal:Q55BS1
STRING:Q55BS1 EnsemblProtists:DDB0233700 GeneID:8617733
KEGG:ddi:DDB_G0270392 ProtClustDB:CLSZ2431463 Uniprot:Q55BS1
Length = 784
Score = 210 (79.0 bits), Expect = 5.5e-29, Sum P(3) = 5.5e-29
Identities = 46/117 (39%), Positives = 68/117 (58%)
Query: 32 AKIEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSP-KVVLVSTPDMECGFSRD 90
+++E+MS FE NPF FKH+K+ SL EL ++P KV+L S+ D+E GFSR+
Sbjct: 285 SQLEFMSSTASVKFEQNIENPFSFKHIKILSSLEELQELPDTNKVILTSSQDLETGFSRE 344
Query: 91 LFFQWCSSPENSIIITNRTSPGTLARDLIEL-----GGNRTLTLQVKKRIRLEGEEL 142
LF QWCS P+ I+ T + +LA LI+ G + + + R+ L G+EL
Sbjct: 345 LFIQWCSDPKTLILFTQKIPKDSLADKLIKQYSTPNGRGKCIEIVQGSRVPLTGDEL 401
Score = 111 (44.1 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 207 RVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNRNRADDSDSNVI 252
+V+L S+ D+E GFSR+LF QWCS P+ I+ T + D +I
Sbjct: 328 KVILTSSQDLETGFSRELFIQWCSDPKTLILFTQKIPKDSLADKLI 373
Score = 90 (36.7 bits), Expect = 5.5e-29, Sum P(3) = 5.5e-29
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 165 HDTSFINELQLSDFKQTLQRNGIDCEFMDGVLICCRGTVAVRR 207
HD SFI +++LSD KQ L GI +F G+L C G V + R
Sbjct: 709 HDESFIGDIKLSDLKQVLVNAGIQVQFDQGILNC-GGLVYIWR 750
Score = 80 (33.2 bits), Expect = 5.5e-29, Sum P(3) = 5.5e-29
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 243 RADDSDSNVIV-LEGCLSDEYYRVQQLLYDQYAIL 276
R +D N I+ ++G +SDEYY +++LLY Q+ I+
Sbjct: 750 RDEDHGGNSIINVDGIISDEYYLIKELLYKQFQIV 784
Score = 71 (30.1 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 1 MSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKI 34
MS FE NPF FKH+K+ SL EL ++
Sbjct: 290 MSSTASVKFEQNIENPFSFKHIKILSSLEELQEL 323
>TAIR|locus:2172843 [details] [associations]
symbol:CPSF100 "cleavage and polyadenylation specificity
factor 100" species:3702 "Arabidopsis thaliana" [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009793 "embryo development ending
in seed dormancy" evidence=NAS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IPI] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS;NAS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0035194 "posttranscriptional gene
silencing by RNA" evidence=IMP] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0006306 "DNA methylation" evidence=RCA] [GO:0006342 "chromatin
silencing" evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
[GO:0006397 "mRNA processing" evidence=RCA] [GO:0007267 "cell-cell
signaling" evidence=RCA] [GO:0009220 "pyrimidine ribonucleotide
biosynthetic process" evidence=RCA] [GO:0009616 "virus induced gene
silencing" evidence=RCA] [GO:0009640 "photomorphogenesis"
evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016569 "covalent chromatin modification"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] InterPro:IPR001279 InterPro:IPR027075
Pfam:PF00753 SMART:SM00849 GO:GO:0009506 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006378 EMBL:AB005244 GO:GO:0003723
GO:GO:0016787 GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027 EMBL:AF283277 EMBL:AY034982
EMBL:BT004374 IPI:IPI00521104 RefSeq:NP_197776.1 UniGene:At.25191
ProteinModelPortal:Q9LKF9 SMR:Q9LKF9 IntAct:Q9LKF9 STRING:Q9LKF9
PaxDb:Q9LKF9 PRIDE:Q9LKF9 EnsemblPlants:AT5G23880.1 GeneID:832453
KEGG:ath:AT5G23880 TAIR:At5g23880 HOGENOM:HOG000264343
InParanoid:Q9LKF9 OMA:NNPFQFK PhylomeDB:Q9LKF9
ProtClustDB:CLSN2686300 Genevestigator:Q9LKF9 GermOnline:AT5G23880
GO:GO:0035194 Uniprot:Q9LKF9
Length = 739
Score = 219 (82.2 bits), Expect = 8.6e-28, Sum P(3) = 8.6e-28
Identities = 45/110 (40%), Positives = 65/110 (59%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVP-SPKVVLVSTPDMECGFSRDLF 92
+EWMSD + KSFE +R+N F +HV L + +L P PKVVL S +E GF+R++F
Sbjct: 281 LEWMSDSISKSFETSRDNAFLLRHVTLLINKTDLDNAPPGPKVVLASMASLEAGFAREIF 340
Query: 93 FQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLEGEEL 142
+W + P N ++ T GTLAR L + + + + KR+ L GEEL
Sbjct: 341 VEWANDPRNLVLFTETGQFGTLARMLQSAPPPKFVKVTMSKRVPLAGEEL 390
Score = 85 (35.0 bits), Expect = 9.2e-06, Sum P(3) = 9.2e-06
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 207 RVVLVSTPDMECGFSRDLFFQWCSSPENSIIIT 239
+VVL S +E GF+R++F +W + P N ++ T
Sbjct: 322 KVVLASMASLEAGFAREIFVEWANDPRNLVLFT 354
Score = 84 (34.6 bits), Expect = 8.6e-28, Sum P(3) = 8.6e-28
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 164 PHDTSFINELQLSDFKQTLQRNGIDCEFMDGVLICCRGTVAVRRV 208
PH + +L+++DFKQ L G+ EF G + C V +R+V
Sbjct: 656 PHKPVLVGDLKIADFKQFLSSKGVQVEFAGGGALRCGEYVTLRKV 700
Score = 67 (28.6 bits), Expect = 9.2e-06, Sum P(3) = 9.2e-06
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 1 MSDKLMKSFEGARNNPFHFKHVKLCHSLAEL 31
MSD + KSFE +R+N F +HV L + +L
Sbjct: 284 MSDSISKSFETSRDNAFLLRHVTLLINKTDL 314
Score = 64 (27.6 bits), Expect = 8.6e-28, Sum P(3) = 8.6e-28
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 252 IVLEGCLSDEYYRVQQLLYDQYAIL 276
I++EG L ++YY+++ LY Q+ +L
Sbjct: 715 ILIEGPLCEDYYKIRDYLYSQFYLL 739
>POMBASE|SPBC1709.15c [details] [associations]
symbol:cft2 "cleavage factor two Cft2/polyadenylation
factor CPSF-73 (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=IDA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=ISO]
[GO:0006378 "mRNA polyadenylation" evidence=ISO] [GO:0006379 "mRNA
cleavage" evidence=ISO] InterPro:IPR027075 PomBase:SPBC1709.15c
Pfam:PF07521 EMBL:CU329671 GO:GO:0006378 GenomeReviews:CU329671_GR
GO:GO:0005847 GO:GO:0006379 PIR:T39643 RefSeq:NP_595448.1
ProteinModelPortal:O74740 STRING:O74740 EnsemblFungi:SPBC1709.15c.1
GeneID:2539954 KEGG:spo:SPBC1709.15c eggNOG:COG1236 KO:K14402
OMA:ISSIATP OrthoDB:EOG4WWVSN NextBio:20801097 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027 Uniprot:O74740
Length = 797
Score = 124 (48.7 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 28/90 (31%), Positives = 48/90 (53%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKV-PSPKVVLVSTPDMECGFSRDLF 92
IEWM D +++ F G N F+++ ++++ + P PKV+L + +ECGFS+ +
Sbjct: 275 IEWMGDNIVRDF-GINENLLEFRNINTITDFSQISHIGPGPKVILATALTLECGFSQRIL 333
Query: 93 FQWCSSPENSIII-TNRTS-P-GTLARDLI 119
S N +I+ T R+ P +LA I
Sbjct: 334 LDLMSENSNDLILFTQRSRCPQNSLANQFI 363
Score = 58 (25.5 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 170 INELQLSDFKQTLQRNGIDCEFM-DGVLICCRGTVAVRRV 208
+ ++L+ ++ L GI E +GVL+C G VAVR++
Sbjct: 730 VGNIRLAYLRKALLDQGISAELKGEGVLLC-GGAVAVRKL 768
Score = 57 (25.1 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 252 IVLEGCLSDEYYRVQQLLYDQYAIL 276
I +EG LS+ ++ +++L+YD A++
Sbjct: 773 ISVEGSLSNRFFEIRKLVYDALAVV 797
>TAIR|locus:2206076 [details] [associations]
symbol:CPSF73-I "cleavage and polyadenylation specificity
factor 73-I" species:3702 "Arabidopsis thaliana" [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
[GO:0006397 "mRNA processing" evidence=RCA] [GO:0009855
"determination of bilateral symmetry" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010073 "meristem
maintenance" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0031507 "heterochromatin assembly" evidence=RCA]
[GO:0045787 "positive regulation of cell cycle" evidence=RCA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006397
GO:GO:0090305 EMBL:AC018908 GO:GO:0004518 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
EMBL:AY140900 EMBL:AY150478 EMBL:AY074280 EMBL:AK316692
EMBL:AK316794 IPI:IPI00533462 PIR:G96635 RefSeq:NP_001031215.1
RefSeq:NP_176297.1 RefSeq:NP_849835.1 UniGene:At.23510
ProteinModelPortal:Q9C952 SMR:Q9C952 IntAct:Q9C952 STRING:Q9C952
PaxDb:Q9C952 PRIDE:Q9C952 EnsemblPlants:AT1G61010.1
EnsemblPlants:AT1G61010.2 EnsemblPlants:AT1G61010.3 GeneID:842393
KEGG:ath:AT1G61010 TAIR:At1g61010 HOGENOM:HOG000203394
InParanoid:Q9C952 KO:K14403 OMA:YVSFSAH PhylomeDB:Q9C952
ProtClustDB:CLSN2681829 Genevestigator:Q9C952 InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 Uniprot:Q9C952
Length = 693
Score = 146 (56.5 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 36/119 (30%), Positives = 60/119 (50%)
Query: 3 DKLMKSFEGARNNPFHFKH--VKLCHSLAELAKIEWMSDKLMKSFEGARNNPFHFKHVKL 60
D+ + N P ++ K C ++ + + M+D++ F A +NPF FKH+
Sbjct: 264 DEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILS-MNDRIRNQF--ANSNPFVFKHISP 320
Query: 61 CHSLAELAKVPSPKVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLI 119
+S+ + V P VV+ + ++ G SR LF WCS +N+ II GTLA+ +I
Sbjct: 321 LNSIDDFNDV-GPSVVMATPGGLQSGLSRQLFDSWCSDKKNACIIPGYMVEGTLAKTII 378
>SGD|S000004267 [details] [associations]
symbol:YSH1 "Putative endoribonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IMP] [GO:0006379 "mRNA
cleavage" evidence=IMP] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=IMP] [GO:0031126 "snoRNA 3'-end
processing" evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP]
[GO:0034247 "snoRNA splicing" evidence=IMP] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IDA;IPI] [GO:0005849 "mRNA cleavage factor complex"
evidence=IPI] [GO:0004521 "endoribonuclease activity"
evidence=ISS;IMP] [GO:0003723 "RNA binding" evidence=IC]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 SGD:S000004267
Pfam:PF07521 GO:GO:0046872 GO:GO:0006378 EMBL:BK006945
GO:GO:0004521 GO:GO:0005847 GO:GO:0006379 GO:GO:0006369
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 EMBL:U17245 HOGENOM:HOG000203394 KO:K14403
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 GO:GO:0031126 GO:GO:0034247
OMA:EISFAAH OrthoDB:EOG41ZJK7 PIR:S51413 RefSeq:NP_013379.1
ProteinModelPortal:Q06224 SMR:Q06224 DIP:DIP-2470N IntAct:Q06224
MINT:MINT-375457 STRING:Q06224 PaxDb:Q06224 PeptideAtlas:Q06224
EnsemblFungi:YLR277C GeneID:850983 KEGG:sce:YLR277C CYGD:YLR277c
NextBio:967501 Genevestigator:Q06224 GermOnline:YLR277C
Uniprot:Q06224
Length = 779
Score = 145 (56.1 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 30/94 (31%), Positives = 51/94 (54%)
Query: 23 KLCHSLAELAKIEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPD 82
K C S+ + + M+D + K F ++ NPF FK++ +L + P V+L S
Sbjct: 284 KKCMSVFQ-TYVNMMNDDIRKKFRDSQTNPFIFKNISYLRNLEDFQDF-GPSVMLASPGM 341
Query: 83 MECGFSRDLFFQWCSSPENSIIITNRTSPGTLAR 116
++ G SRDL +WC +N ++IT + GT+A+
Sbjct: 342 LQSGLSRDLLERWCPEDKNLVLITGYSIEGTMAK 375
>UNIPROTKB|G5E9W3 [details] [associations]
symbol:CPSF3 "Cleavage and polyadenylation-specificity
factor subunit 3" species:9606 "Homo sapiens" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 EMBL:CH471053 GO:GO:0003723 GO:GO:0004521
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098 GO:GO:0008409
EMBL:AC080162 UniGene:Hs.515972 HGNC:HGNC:2326 ChiTaRS:CPSF3
ProteinModelPortal:G5E9W3 SMR:G5E9W3 PRIDE:G5E9W3
Ensembl:ENST00000460593 ArrayExpress:G5E9W3 Bgee:G5E9W3
Uniprot:G5E9W3
Length = 647
Score = 143 (55.4 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 33/97 (34%), Positives = 50/97 (51%)
Query: 23 KLCHSLAELAKIEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPD 82
K C ++ + + M+DK+ K NNPF FKH+ S+ + P VV+ S
Sbjct: 239 KKCMAVYQ-TYVNAMNDKIRKQIN--INNPFVFKHISNLKSMDHFDDI-GPSVVMASPGM 294
Query: 83 MECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLI 119
M+ G SR+LF WC+ N +II GTLA+ ++
Sbjct: 295 MQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIM 331
>UNIPROTKB|P79101 [details] [associations]
symbol:CPSF3 "Cleavage and polyadenylation specificity
factor subunit 3" species:9913 "Bos taurus" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0006398 "histone mRNA 3'-end processing"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0004521
"endoribonuclease activity" evidence=ISS] [GO:0008409 "5'-3'
exonuclease activity" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0046872 GO:GO:0003723 GO:GO:0030529 GO:GO:0004521
GO:GO:0005847 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 GO:GO:0006398 HOGENOM:HOG000203394
KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
EMBL:X95906 EMBL:BC104553 IPI:IPI00708839 RefSeq:NP_776709.1
UniGene:Bt.5045 ProteinModelPortal:P79101 SMR:P79101 STRING:P79101
PRIDE:P79101 Ensembl:ENSBTAT00000026303 GeneID:281712
KEGG:bta:281712 CTD:51692 GeneTree:ENSGT00700000104485
HOVERGEN:HBG051107 InParanoid:P79101 OrthoDB:EOG4FN4H6
NextBio:20805634 ArrayExpress:P79101 GO:GO:0008409 Uniprot:P79101
Length = 684
Score = 143 (55.4 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 33/97 (34%), Positives = 50/97 (51%)
Query: 23 KLCHSLAELAKIEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPD 82
K C ++ + + M+DK+ K NNPF FKH+ S+ + P VV+ S
Sbjct: 276 KKCMAVYQ-TYVNAMNDKIRKQIN--INNPFVFKHISNLKSMDHFDDI-GPSVVMASPGM 331
Query: 83 MECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLI 119
M+ G SR+LF WC+ N +II GTLA+ ++
Sbjct: 332 MQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIM 368
>UNIPROTKB|Q9UKF6 [details] [associations]
symbol:CPSF3 "Cleavage and polyadenylation specificity
factor subunit 3" species:9606 "Homo sapiens" [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008409 "5'-3' exonuclease activity" evidence=ISS] [GO:0004521
"endoribonuclease activity" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006398 "histone mRNA 3'-end processing"
evidence=IDA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
EMBL:AF017269 Pfam:PF07521 EMBL:AF171877 EMBL:CH471053
GO:GO:0046872 Reactome:REACT_1675 GO:GO:0006378 GO:GO:0003723
GO:GO:0030529 GO:GO:0006406 GO:GO:0004521 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0005847 GO:GO:0006379 GO:GO:0006369
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 Reactome:REACT_78 GO:GO:0006398 HOGENOM:HOG000203394
KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
CTD:51692 HOVERGEN:HBG051107 OrthoDB:EOG4FN4H6 GO:GO:0008409
EMBL:AC080162 EMBL:BC011654 EMBL:BC020211 IPI:IPI00007818
RefSeq:NP_057291.1 UniGene:Hs.515972 PDB:2I7T PDB:2I7V PDBsum:2I7T
PDBsum:2I7V ProteinModelPortal:Q9UKF6 SMR:Q9UKF6 DIP:DIP-42501N
MINT:MINT-1742891 STRING:Q9UKF6 PhosphoSite:Q9UKF6 DMDM:18203503
PaxDb:Q9UKF6 PeptideAtlas:Q9UKF6 PRIDE:Q9UKF6 DNASU:51692
Ensembl:ENST00000238112 GeneID:51692 KEGG:hsa:51692 UCSC:uc002qzo.1
GeneCards:GC02P009514 HGNC:HGNC:2326 HPA:HPA034657 MIM:606029
neXtProt:NX_Q9UKF6 PharmGKB:PA26843 InParanoid:Q9UKF6
PhylomeDB:Q9UKF6 ChiTaRS:CPSF3 EvolutionaryTrace:Q9UKF6
GenomeRNAi:51692 NextBio:55702 ArrayExpress:Q9UKF6 Bgee:Q9UKF6
CleanEx:HS_CPSF3 Genevestigator:Q9UKF6 GermOnline:ENSG00000119203
Uniprot:Q9UKF6
Length = 684
Score = 143 (55.4 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 33/97 (34%), Positives = 50/97 (51%)
Query: 23 KLCHSLAELAKIEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPD 82
K C ++ + + M+DK+ K NNPF FKH+ S+ + P VV+ S
Sbjct: 276 KKCMAVYQ-TYVNAMNDKIRKQIN--INNPFVFKHISNLKSMDHFDDI-GPSVVMASPGM 331
Query: 83 MECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLI 119
M+ G SR+LF WC+ N +II GTLA+ ++
Sbjct: 332 MQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIM 368
>UNIPROTKB|F1NKW5 [details] [associations]
symbol:CPSF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0006398 "histone mRNA 3'-end processing"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0003723 GO:GO:0004521 GO:GO:0005847
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 GO:GO:0008409 EMBL:AADN02018718
IPI:IPI00600642 Ensembl:ENSGALT00000026493 Uniprot:F1NKW5
Length = 685
Score = 143 (55.4 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 33/97 (34%), Positives = 50/97 (51%)
Query: 23 KLCHSLAELAKIEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPD 82
K C ++ + + M+DK+ K NNPF FKH+ S+ + P VV+ S
Sbjct: 276 KKCMAVYQ-TYVNAMNDKIRKQIN--INNPFVFKHISNLKSMDHFDDI-GPSVVMASPGM 331
Query: 83 MECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLI 119
M+ G SR+LF WC+ N +II GTLA+ ++
Sbjct: 332 MQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIM 368
>UNIPROTKB|I3LKR1 [details] [associations]
symbol:CPSF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008409 "5'-3' exonuclease activity" evidence=IEA]
[GO:0006398 "histone mRNA 3'-end processing" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0003723 GO:GO:0004521 GO:GO:0005847 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 OMA:YVSFSAH
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 GO:GO:0008409 EMBL:FP312696
Ensembl:ENSSSCT00000027309 Uniprot:I3LKR1
Length = 687
Score = 143 (55.4 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 33/97 (34%), Positives = 50/97 (51%)
Query: 23 KLCHSLAELAKIEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPD 82
K C ++ + + M+DK+ K NNPF FKH+ S+ + P VV+ S
Sbjct: 279 KKCMAVYQ-TYVNAMNDKIRKQIN--INNPFVFKHISNLKSMDHFDDI-GPSVVMASPGM 334
Query: 83 MECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLI 119
M+ G SR+LF WC+ N +II GTLA+ ++
Sbjct: 335 MQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIM 371
>UNIPROTKB|E2R7R2 [details] [associations]
symbol:CPSF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718
SMART:SM01098 GeneTree:ENSGT00700000104485 EMBL:AAEX03010701
RefSeq:XP_003639652.1 Ensembl:ENSCAFT00000005417 GeneID:100856414
KEGG:cfa:100856414 Uniprot:E2R7R2
Length = 717
Score = 143 (55.4 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 33/97 (34%), Positives = 50/97 (51%)
Query: 23 KLCHSLAELAKIEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPD 82
K C ++ + + M+DK+ K NNPF FKH+ S+ + P VV+ S
Sbjct: 309 KKCMAVYQ-TYVNAMNDKIRKQIN--INNPFVFKHISNLKSMDHFDDI-GPSVVMASPGM 364
Query: 83 MECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLI 119
M+ G SR+LF WC+ N +II GTLA+ ++
Sbjct: 365 MQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIM 401
>ZFIN|ZDB-GENE-030131-3275 [details] [associations]
symbol:cpsf3 "cleavage and polyadenylation
specific factor 3" species:7955 "Danio rerio" [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 ZFIN:ZDB-GENE-030131-3275 GO:GO:0016787
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
KO:K14403 InterPro:IPR021718 Pfam:PF11718 SMART:SM01098 CTD:51692
HOVERGEN:HBG051107 EMBL:AY648793 IPI:IPI00509063
RefSeq:NP_001003836.1 UniGene:Dr.77231 ProteinModelPortal:Q6DRG6
SMR:Q6DRG6 STRING:Q6DRG6 GeneID:324554 KEGG:dre:324554
NextBio:20808833 ArrayExpress:Q6DRG6 Uniprot:Q6DRG6
Length = 690
Score = 144 (55.7 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 33/97 (34%), Positives = 51/97 (52%)
Query: 23 KLCHSLAELAKIEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPD 82
K C ++ + + M+DK+ K+ NNPF FKH+ S+ + P VV+ S
Sbjct: 283 KKCMAVYQ-TYVNAMNDKIRKAIN--INNPFVFKHISNLKSMDHFDDI-GPSVVMASPGM 338
Query: 83 MECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLI 119
M+ G SR+LF WC+ N +II GTLA+ ++
Sbjct: 339 MQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIM 375
Score = 36 (17.7 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 162 IPPHDTSFINELQLSDFKQT 181
+ P D S +L +S KQT
Sbjct: 502 LSPSDLSNYTDLAMSTVKQT 521
>FB|FBgn0261065 [details] [associations]
symbol:Cpsf73 "Cleavage and polyadenylation specificity
factor 73" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS;NAS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS;IMP] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006398 "histone mRNA 3'-end
processing" evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR001279
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 EMBL:AE014297 GO:GO:0022008
GO:GO:0003677 GO:GO:0006378 GO:GO:0016787 GO:GO:0005847
GO:GO:0006379 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 GO:GO:0006398 KO:K14403 OMA:YVSFSAH
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 EMBL:AY119128 RefSeq:NP_650738.1
UniGene:Dm.13714 SMR:Q9VE51 IntAct:Q9VE51 MINT:MINT-804945
STRING:Q9VE51 EnsemblMetazoa:FBtr0083690 GeneID:42240
KEGG:dme:Dmel_CG7698 UCSC:CG7698-RA CTD:42240 FlyBase:FBgn0261065
InParanoid:Q9VE51 OrthoDB:EOG4P5HR4 GenomeRNAi:42240 NextBio:827838
Uniprot:Q9VE51
Length = 684
Score = 140 (54.3 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 31/97 (31%), Positives = 52/97 (53%)
Query: 23 KLCHSLAELAKIEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPD 82
K C ++ + I M+D++ + A NNPF F+H+ + + P V++ S
Sbjct: 282 KKCMAVYQ-TYINAMNDRIRRQI--AVNNPFVFRHISNLKGIDHFEDI-GPCVIMASPGM 337
Query: 83 MECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLI 119
M+ G SR+LF WC+ P+N +II GTLA+ ++
Sbjct: 338 MQSGLSRELFESWCTDPKNGVIIAGYCVEGTLAKAVL 374
>MGI|MGI:1859328 [details] [associations]
symbol:Cpsf3 "cleavage and polyadenylation specificity
factor 3" species:10090 "Mus musculus" [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISO;IDA] [GO:0006378 "mRNA polyadenylation" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006398 "histone
mRNA 3'-end processing" evidence=ISO;IDA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IDA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
MGI:MGI:1859328 GO:GO:0046872 GO:GO:0003723 GO:GO:0030529
GO:GO:0004521 GO:GO:0005847 eggNOG:COG1236 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 GO:GO:0006398
HOGENOM:HOG000203394 KO:K14403 OMA:YVSFSAH InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 CTD:51692 GeneTree:ENSGT00700000104485
HOVERGEN:HBG051107 OrthoDB:EOG4FN4H6 GO:GO:0008409 ChiTaRS:CPSF3
EMBL:AF203969 EMBL:BC023297 IPI:IPI00135099 RefSeq:NP_061283.2
UniGene:Mm.356778 ProteinModelPortal:Q9QXK7 SMR:Q9QXK7
STRING:Q9QXK7 PhosphoSite:Q9QXK7 PaxDb:Q9QXK7 PRIDE:Q9QXK7
Ensembl:ENSMUST00000067284 GeneID:54451 KEGG:mmu:54451
InParanoid:Q8CIM0 NextBio:311332 Bgee:Q9QXK7 CleanEx:MM_CPSF3
Genevestigator:Q9QXK7 GermOnline:ENSMUSG00000054309 Uniprot:Q9QXK7
Length = 684
Score = 137 (53.3 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 32/97 (32%), Positives = 50/97 (51%)
Query: 23 KLCHSLAELAKIEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPD 82
K C ++ + + M+DK+ K NNPF FKH+ S+ + P VV+ S
Sbjct: 276 KKCMAVYQ-TYVNAMNDKIRKQIN--INNPFVFKHISNLKSMDHFDDI-GPSVVMASPGM 331
Query: 83 MECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLI 119
++ G SR+LF WC+ N +II GTLA+ ++
Sbjct: 332 IQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIM 368
>RGD|1305767 [details] [associations]
symbol:Cpsf3 "cleavage and polyadenylation specific factor 3,
73kDa" species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0004521 "endoribonuclease activity" evidence=ISO]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISO] [GO:0006398 "histone mRNA 3'-end processing"
evidence=ISO] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISO] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 RGD:1305767 GO:GO:0016787 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000203394 KO:K14403 InterPro:IPR021718 Pfam:PF11718
SMART:SM01098 CTD:51692 HOVERGEN:HBG051107 OrthoDB:EOG4FN4H6
UniGene:Rn.100522 EMBL:BC099817 IPI:IPI00365532
RefSeq:NP_001025201.1 ProteinModelPortal:Q499P4 SMR:Q499P4
STRING:Q499P4 GeneID:298916 KEGG:rno:298916 InParanoid:Q499P4
NextBio:644507 Genevestigator:Q499P4 Uniprot:Q499P4
Length = 685
Score = 137 (53.3 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 32/97 (32%), Positives = 50/97 (51%)
Query: 23 KLCHSLAELAKIEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPD 82
K C ++ + + M+DK+ K NNPF FKH+ S+ + P VV+ S
Sbjct: 276 KKCMAVYQ-TYVNAMNDKIRKQIN--INNPFVFKHISNLKSMDHFDDI-GPSVVMASPGM 331
Query: 83 MECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLI 119
++ G SR+LF WC+ N +II GTLA+ ++
Sbjct: 332 IQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIM 368
>UNIPROTKB|G3V6W7 [details] [associations]
symbol:Cpsf3 "Protein Cpsf3" species:10116 "Rattus
norvegicus" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
RGD:1305767 GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 EMBL:CH473947 OMA:YVSFSAH
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 UniGene:Rn.100522
Ensembl:ENSRNOT00000009652 Uniprot:G3V6W7
Length = 685
Score = 137 (53.3 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 32/97 (32%), Positives = 50/97 (51%)
Query: 23 KLCHSLAELAKIEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPD 82
K C ++ + + M+DK+ K NNPF FKH+ S+ + P VV+ S
Sbjct: 276 KKCMAVYQ-TYVNAMNDKIRKQIN--INNPFVFKHISNLKSMDHFDDI-GPSVVMASPGM 331
Query: 83 MECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLI 119
++ G SR+LF WC+ N +II GTLA+ ++
Sbjct: 332 IQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIM 368
>CGD|CAL0005344 [details] [associations]
symbol:orf19.5486 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0004521 "endoribonuclease
activity" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0034247 "snoRNA splicing"
evidence=IEA] [GO:0031126 "snoRNA 3'-end processing" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006369 "termination
of RNA polymerase II transcription" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 CGD:CAL0005344 Pfam:PF07521 GO:GO:0005634
GO:GO:0042493 GO:GO:0046872 GO:GO:0006397 GO:GO:0090305
GO:GO:0004519 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 KO:K14403 InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 EMBL:AACQ01000196 EMBL:AACQ01000195
RefSeq:XP_711478.1 RefSeq:XP_711502.1 ProteinModelPortal:Q59P50
STRING:Q59P50 GeneID:3646887 GeneID:3646911 KEGG:cal:CaO19.12941
KEGG:cal:CaO19.5486 Uniprot:Q59P50
Length = 870
Score = 138 (53.6 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 38/122 (31%), Positives = 67/122 (54%)
Query: 3 DKLMKSFEGARN-NPFHFKHV-KLCHSLAELAKIEWMSDKL-MKSFEGARNNPFHFKHVK 59
D+ E +N N F+ ++ K C ++ E M+DK+ + S ++NPF FK++K
Sbjct: 352 DEYWSQNEDLQNVNVFYASNLAKKCMAVYE-TYTGIMNDKIRLSSASSEKSNPFDFKYIK 410
Query: 60 LCHSLAELAKVPSPKVVLVSTPDM-ECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDL 118
L++ + P VV V+TP M + G SR L +W +N +I+T + GT+A++L
Sbjct: 411 SIKDLSKFQDM-GPSVV-VATPGMLQAGVSRQLLEKWAPDGKNLVILTGYSVEGTMAKEL 468
Query: 119 IE 120
++
Sbjct: 469 LK 470
>UNIPROTKB|Q59P50 [details] [associations]
symbol:YSH1 "Endoribonuclease YSH1" species:237561 "Candida
albicans SC5314" [GO:0042493 "response to drug" evidence=IMP]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 CGD:CAL0005344
Pfam:PF07521 GO:GO:0005634 GO:GO:0042493 GO:GO:0046872
GO:GO:0006397 GO:GO:0090305 GO:GO:0004519 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
KO:K14403 InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
EMBL:AACQ01000196 EMBL:AACQ01000195 RefSeq:XP_711478.1
RefSeq:XP_711502.1 ProteinModelPortal:Q59P50 STRING:Q59P50
GeneID:3646887 GeneID:3646911 KEGG:cal:CaO19.12941
KEGG:cal:CaO19.5486 Uniprot:Q59P50
Length = 870
Score = 138 (53.6 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 38/122 (31%), Positives = 67/122 (54%)
Query: 3 DKLMKSFEGARN-NPFHFKHV-KLCHSLAELAKIEWMSDKL-MKSFEGARNNPFHFKHVK 59
D+ E +N N F+ ++ K C ++ E M+DK+ + S ++NPF FK++K
Sbjct: 352 DEYWSQNEDLQNVNVFYASNLAKKCMAVYE-TYTGIMNDKIRLSSASSEKSNPFDFKYIK 410
Query: 60 LCHSLAELAKVPSPKVVLVSTPDM-ECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDL 118
L++ + P VV V+TP M + G SR L +W +N +I+T + GT+A++L
Sbjct: 411 SIKDLSKFQDM-GPSVV-VATPGMLQAGVSRQLLEKWAPDGKNLVILTGYSVEGTMAKEL 468
Query: 119 IE 120
++
Sbjct: 469 LK 470
>WB|WBGene00013460 [details] [associations]
symbol:cpsf-3 species:6239 "Caenorhabditis elegans"
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0016787 eggNOG:COG1236 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 HOGENOM:HOG000203394
KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 EMBL:AL132951 RefSeq:NP_502553.2
ProteinModelPortal:Q95PY8 SMR:Q95PY8 STRING:Q95PY8 PaxDb:Q95PY8
EnsemblMetazoa:Y67H2A.1.1 EnsemblMetazoa:Y67H2A.1.2 GeneID:178285
KEGG:cel:CELE_Y67H2A.1 UCSC:Y67H2A.1 CTD:178285 WormBase:Y67H2A.1
InParanoid:Q95PY8 NextBio:900506 Uniprot:Q95PY8
Length = 707
Score = 137 (53.3 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 38/120 (31%), Positives = 59/120 (49%)
Query: 3 DKLMKSFEGARNNPFHFKH--VKLCHSLAELAKIEWMSDKLMKSFEGARNNPFHFKHVKL 60
D+ +S + + P ++ K C S+ + + M+ ++ K A NPF FKHV
Sbjct: 255 DEYWESHQELHDIPVYYASSLAKKCMSVYQTF-VNGMNSRIQKQI--AVKNPFIFKHVST 311
Query: 61 CHSLAELAKVPSPKVVLVSTPDM-ECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDLI 119
+ + P VVL +TP M + GFSR+LF WC +N II GTLA+ ++
Sbjct: 312 LRGMDQFEDA-GPCVVL-ATPGMLQSGFSRELFESWCPDTKNGCIIAGYCVEGTLAKHIL 369
>UNIPROTKB|H0YJF4 [details] [associations]
symbol:CPSF2 "Cleavage and polyadenylation-specificity
factor subunit 2" species:9606 "Homo sapiens" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] InterPro:IPR027075
Pfam:PF07521 InterPro:IPR025069 InterPro:IPR011108
PANTHER:PTHR11203:SF5 Pfam:PF13299 HGNC:HGNC:2325 ChiTaRS:CPSF2
EMBL:AL121773 Ensembl:ENST00000555244 Uniprot:H0YJF4
Length = 269
Score = 127 (49.8 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 26/46 (56%), Positives = 32/46 (69%)
Query: 162 IPPHDTSFINELQLSDFKQTLQRNGIDCEFMDGVLICCRGTVAVRR 207
+P H + F+NE +LSDFKQ L R GI EF+ GVL+C VAVRR
Sbjct: 225 VPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVC-NNQVAVRR 269
>UNIPROTKB|F1SD84 [details] [associations]
symbol:LOC100625560 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
InterPro:IPR027075 Pfam:PF07521 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF13299
GeneTree:ENSGT00700000104551 EMBL:CU468363
Ensembl:ENSSSCT00000002718 OMA:VEGCASE Uniprot:F1SD84
Length = 304
Score = 127 (49.8 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 26/46 (56%), Positives = 32/46 (69%)
Query: 162 IPPHDTSFINELQLSDFKQTLQRNGIDCEFMDGVLICCRGTVAVRR 207
+P H + F+NE +LSDFKQ L R GI EF+ GVL+C VAVRR
Sbjct: 230 VPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVC-NNQVAVRR 274
>DICTYBASE|DDB_G0274799 [details] [associations]
symbol:cpsf3 "cleavage and polyadenylation
specificity factor 73 kDa subunit" species:44689 "Dictyostelium
discoideum" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;IC] [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
dictyBase:DDB_G0274799 Pfam:PF07521 GO:GO:0046872 GO:GO:0006378
GenomeReviews:CM000151_GR EMBL:AAFI02000012 GO:GO:0003730
GO:GO:0004519 GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
RefSeq:XP_643926.1 ProteinModelPortal:Q86A79 SMR:Q86A79
STRING:Q86A79 EnsemblProtists:DDB0233696 GeneID:8619353
KEGG:ddi:DDB_G0274799 ProtClustDB:CLSZ2431003 Uniprot:Q86A79
Length = 774
Score = 131 (51.2 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 30/86 (34%), Positives = 46/86 (53%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECGFSRDLFF 93
I M+D++ F+ + NPF FKH+K + E P V + S ++ G SR LF
Sbjct: 313 INMMNDRVRAQFDVS--NPFEFKHIKNIKGI-ESFDDRGPCVFMASPGMLQSGLSRQLFE 369
Query: 94 QWCSSPENSIIITNRTSPGTLARDLI 119
+WCS N I+I + GTLA+ ++
Sbjct: 370 RWCSDKRNGIVIPGYSVEGTLAKHIM 395
>POMBASE|SPAC17G6.16c [details] [associations]
symbol:ysh1 "mRNA cleavage and polyadenylation
specificity factor complex endoribonuclease subunit Ysh1"
species:4896 "Schizosaccharomyces pombe" [GO:0004521
"endoribonuclease activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IC]
[GO:0006379 "mRNA cleavage" evidence=IC] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 PomBase:SPAC17G6.16c Pfam:PF07521 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0006378
GO:GO:0004521 GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000203394 InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
OrthoDB:EOG41ZJK7 PIR:T37848 RefSeq:NP_594263.2 STRING:O13794
EnsemblFungi:SPAC17G6.16c.1 GeneID:2542258 NextBio:20803322
Uniprot:O13794
Length = 757
Score = 127 (49.8 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 30/108 (27%), Positives = 56/108 (51%)
Query: 13 RNNPFHFKH--VKLCHSLAELAKIEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKV 70
R+ P ++ + C ++ + + M+D + K F A NPF F+ VK +L + +
Sbjct: 271 RSVPIYYASSLARKCMAIFQ-TYVNMMNDNIRKIF--AERNPFIFRFVKSLRNLEKFDDI 327
Query: 71 PSPKVVLVSTPDMECGFSRDLFFQWCSSPENSIIITNRTSPGTLARDL 118
P V+L S ++ G SR L +W P N++++T + GT+A+ +
Sbjct: 328 -GPSVILASPGMLQNGVSRTLLERWAPDPRNTLLLTGYSVEGTMAKQI 374
>WB|WBGene00008642 [details] [associations]
symbol:F10B5.8 species:6239 "Caenorhabditis elegans"
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0009792 EMBL:Z48334 GO:GO:0016787 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000231294 KO:K13148 OMA:MAVEYMS
GeneTree:ENSGT00700000104485 PIR:T20694 RefSeq:NP_495706.2
ProteinModelPortal:Q9U3K2 SMR:Q9U3K2 STRING:Q9U3K2 PaxDb:Q9U3K2
EnsemblMetazoa:F10B5.8 GeneID:174310 KEGG:cel:CELE_F10B5.8
UCSC:F10B5.8 CTD:174310 WormBase:F10B5.8 InParanoid:Q9U3K2
NextBio:883468 Uniprot:Q9U3K2
Length = 608
Score = 123 (48.4 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 37/106 (34%), Positives = 51/106 (48%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDM-ECGFSRDLF 92
I W ++ + K+F N F FKH+K E P P+V L STP M G S +F
Sbjct: 288 ISWTNENIKKTF--VERNMFEFKHIKPMEKGCE--DQPGPQV-LFSTPGMLHGGQSLKVF 342
Query: 93 FQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKR-IRL 137
+WCS P N II+ GT+ +I G + + + K IRL
Sbjct: 343 KKWCSDPLNMIIMPGYCVAGTVGARVIN--GEKKIEIDQKMHEIRL 386
>CGD|CAL0004705 [details] [associations]
symbol:orf19.325 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
InterPro:IPR027075 CGD:CAL0004705 GO:GO:0042493 EMBL:AACQ01000027
EMBL:AACQ01000026 eggNOG:COG1236 KO:K14402 InterPro:IPR022712
InterPro:IPR025069 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 RefSeq:XP_720020.1 RefSeq:XP_720152.1
ProteinModelPortal:Q5AEE3 STRING:Q5AEE3 GeneID:3638181
GeneID:3638320 KEGG:cal:CaO19.325 KEGG:cal:CaO19.7957
Uniprot:Q5AEE3
Length = 931
Score = 108 (43.1 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 25/78 (32%), Positives = 40/78 (51%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECG-FSRDLF 92
++WMS K +E + PF+ V L +EL K+ PK+V S D+ G S + F
Sbjct: 286 LDWMSKSFTKEWEELSSVPFNPSKVDLLLDPSELLKLSGPKIVFCSGIDLRSGDISAEAF 345
Query: 93 FQWCSSPENSIIITNRTS 110
C+ +II+T +T+
Sbjct: 346 QYLCNDEHTTIILTEKTT 363
Score = 50 (22.7 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 170 INELQLSDFKQTLQRNGIDCEFM-DGVLICCRGTVAVRRV 208
I ++L D K+ LQ + EF +G L+ +AVR++
Sbjct: 856 IGNIRLPDLKKKLQNLNMTAEFKSEGTLVV-NDILAVRKI 894
Score = 44 (20.5 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 245 DDSDSNVIVLEGCLSDEYYRVQQLLYDQYA 274
+ +S IV++G + YY+V++ + + A
Sbjct: 900 ESDESGDIVIDGNVGPLYYKVKECIREMLA 929
>UNIPROTKB|Q5AEE3 [details] [associations]
symbol:CFT2 "Putative uncharacterized protein CFT2"
species:237561 "Candida albicans SC5314" [GO:0042493 "response to
drug" evidence=IMP] InterPro:IPR027075 CGD:CAL0004705 GO:GO:0042493
EMBL:AACQ01000027 EMBL:AACQ01000026 eggNOG:COG1236 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027 RefSeq:XP_720020.1
RefSeq:XP_720152.1 ProteinModelPortal:Q5AEE3 STRING:Q5AEE3
GeneID:3638181 GeneID:3638320 KEGG:cal:CaO19.325
KEGG:cal:CaO19.7957 Uniprot:Q5AEE3
Length = 931
Score = 108 (43.1 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 25/78 (32%), Positives = 40/78 (51%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECG-FSRDLF 92
++WMS K +E + PF+ V L +EL K+ PK+V S D+ G S + F
Sbjct: 286 LDWMSKSFTKEWEELSSVPFNPSKVDLLLDPSELLKLSGPKIVFCSGIDLRSGDISAEAF 345
Query: 93 FQWCSSPENSIIITNRTS 110
C+ +II+T +T+
Sbjct: 346 QYLCNDEHTTIILTEKTT 363
Score = 50 (22.7 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 170 INELQLSDFKQTLQRNGIDCEFM-DGVLICCRGTVAVRRV 208
I ++L D K+ LQ + EF +G L+ +AVR++
Sbjct: 856 IGNIRLPDLKKKLQNLNMTAEFKSEGTLVV-NDILAVRKI 894
Score = 44 (20.5 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 245 DDSDSNVIVLEGCLSDEYYRVQQLLYDQYA 274
+ +S IV++G + YY+V++ + + A
Sbjct: 900 ESDESGDIVIDGNVGPLYYKVKECIREMLA 929
>UNIPROTKB|G4N6C6 [details] [associations]
symbol:MGG_06570 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=ISS] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0005849 "mRNA cleavage factor complex"
evidence=ISS] [GO:0006378 "mRNA polyadenylation" evidence=ISS]
[GO:0006379 "mRNA cleavage" evidence=ISS] InterPro:IPR027075
Pfam:PF07521 GO:GO:0006378 EMBL:CM001234 GO:GO:0005847
GO:GO:0006379 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 RefSeq:XP_003716967.1 EnsemblFungi:MGG_06570T0
GeneID:2684725 KEGG:mgr:MGG_06570 Uniprot:G4N6C6
Length = 962
Score = 86 (35.3 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 46 EGARNNPFHFKHVKLCHSLAELAKVPSP-------KVVLVSTPDMECGFSRDLFFQWCSS 98
+G PF FK+++L A++ K+ P KV+L + +E GFS+D+ +
Sbjct: 362 KGKDGGPFDFKYLRLLDRKAQVLKLLEPSTDELRGKVILATDTSLEWGFSKDIISAIAND 421
Query: 99 PENSIIITNRTSPGTLARD 117
N +I+ + P +RD
Sbjct: 422 SRNMVILPEK--PAESSRD 438
Score = 65 (27.9 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 170 INELQLSDFKQTLQRNGIDCEFM-DGVLICCRGTVAVRR 207
+ EL+L+D ++T+Q G +F +G L+ GTV VR+
Sbjct: 880 VGELRLADLRRTMQNLGHSADFRGEGTLLI-DGTVVVRK 917
Score = 54 (24.1 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 26 HSLAELAK--IEWMSDKLMKSFEGARNNPF 53
HS +LAK EWM + +++ FE + F
Sbjct: 320 HSTIKLAKSMFEWMDNSIVQEFEAGADQGF 349
>UNIPROTKB|F1RJE8 [details] [associations]
symbol:CPSF3L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 OMA:MAVEYMS GeneTree:ENSGT00700000104485
EMBL:FP102596 RefSeq:XP_003127541.3 Ensembl:ENSSSCT00000003708
GeneID:100523908 KEGG:ssc:100523908 Uniprot:F1RJE8
Length = 599
Score = 118 (46.6 bits), Expect = 0.00030, P = 0.00030
Identities = 32/106 (30%), Positives = 52/106 (49%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDM-ECGFSRDLF 92
I W + K+ K+F + N F FKH+K A P P VV +TP M G S +F
Sbjct: 283 IPWTNQKIRKTF--VQRNMFEFKHIKAFDRA--FADSPGPMVVF-ATPGMLHAGQSLQIF 337
Query: 93 FQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLE 138
+W + +N +I+ GT+ + L G R L L+ ++ + ++
Sbjct: 338 RKWAGNEKNMVIMPGYCVQGTVGHKI--LSGQRKLELEGRQVLEVK 381
>MGI|MGI:1919207 [details] [associations]
symbol:Cpsf3l "cleavage and polyadenylation specific factor
3-like" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 MGI:MGI:1919207 GO:GO:0005737 GO:GO:0016787
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000231294 KO:K13148 OMA:MAVEYMS
GeneTree:ENSGT00700000104485 GO:GO:0032039 GO:GO:0016180
HOVERGEN:HBG080215 OrthoDB:EOG4GXFMB CTD:54973 EMBL:AK010425
EMBL:AK090206 EMBL:AK150436 EMBL:AK152740 EMBL:AK167607
EMBL:AK172533 EMBL:BC008240 EMBL:BC011155 IPI:IPI00467084
RefSeq:NP_082296.1 UniGene:Mm.259270 UniGene:Mm.475640
ProteinModelPortal:Q9CWS4 SMR:Q9CWS4 STRING:Q9CWS4
PhosphoSite:Q9CWS4 PaxDb:Q9CWS4 PRIDE:Q9CWS4
Ensembl:ENSMUST00000030901 GeneID:71957 KEGG:mmu:71957
InParanoid:Q9CWS4 NextBio:335052 Bgee:Q9CWS4 Genevestigator:Q9CWS4
GermOnline:ENSMUSG00000029034 Uniprot:Q9CWS4
Length = 600
Score = 117 (46.2 bits), Expect = 0.00038, P = 0.00038
Identities = 31/106 (29%), Positives = 52/106 (49%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDM-ECGFSRDLF 92
I W + K+ K+F + N F FKH+K A P P VV +TP M G S +F
Sbjct: 283 ITWTNQKIRKTF--VQRNMFEFKHIKAFDRT--FADNPGPMVVF-ATPGMLHAGQSLQIF 337
Query: 93 FQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLE 138
+W + +N +I+ GT+ + L G R L ++ ++ + ++
Sbjct: 338 RKWAGNEKNMVIMPGYCVQGTVGHKI--LSGQRKLEMEGRQMLEVK 381
>RGD|1306841 [details] [associations]
symbol:Cpsf3l "cleavage and polyadenylation specific factor
3-like" species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 RGD:1306841 GO:GO:0005634 GO:GO:0005737
GO:GO:0016787 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 HOGENOM:HOG000231294 KO:K13148
OMA:MAVEYMS GeneTree:ENSGT00700000104485 HOVERGEN:HBG080215
OrthoDB:EOG4GXFMB CTD:54973 EMBL:BC105303 IPI:IPI00365477
RefSeq:NP_001029064.1 UniGene:Rn.98615 ProteinModelPortal:Q3MHC2
STRING:Q3MHC2 Ensembl:ENSRNOT00000026725 GeneID:298688
KEGG:rno:298688 InParanoid:Q3MHC2 NextBio:644186
Genevestigator:Q3MHC2 GermOnline:ENSRNOG00000019712 Uniprot:Q3MHC2
Length = 600
Score = 117 (46.2 bits), Expect = 0.00038, P = 0.00038
Identities = 31/106 (29%), Positives = 52/106 (49%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDM-ECGFSRDLF 92
I W + K+ K+F + N F FKH+K A P P VV +TP M G S +F
Sbjct: 283 ITWTNQKIRKTF--VQRNMFEFKHIKAFDRT--FADNPGPMVVF-ATPGMLHAGQSLQIF 337
Query: 93 FQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLE 138
+W + +N +I+ GT+ + L G R L ++ ++ + ++
Sbjct: 338 RKWAGNEKNMVIMPGYCVQGTVGHKI--LSGQRKLEMEGRQMLEVK 381
>UNIPROTKB|E1B7Q9 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9913
"Bos taurus" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 OMA:MAVEYMS GeneTree:ENSGT00700000104485
EMBL:DAAA02043243 IPI:IPI00971575 Ensembl:ENSBTAT00000010020
Uniprot:E1B7Q9
Length = 598
Score = 116 (45.9 bits), Expect = 0.00049, P = 0.00049
Identities = 31/106 (29%), Positives = 52/106 (49%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDM-ECGFSRDLF 92
I W + K+ K+F + N F FKH+K A P P VV +TP M G S +F
Sbjct: 282 IPWTNQKIRKTF--VQRNMFEFKHIKAFDRA--FADSPGPMVVF-ATPGMLHAGQSLQIF 336
Query: 93 FQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLE 138
+W + +N +I+ GT+ + L G R L ++ ++ + ++
Sbjct: 337 RKWAGNEKNMVIMPGYCVQGTVGHKI--LSGQRKLEMEGRQVLEVK 380
>UNIPROTKB|Q2YDM2 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9913
"Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0005634 GO:GO:0005737 GO:GO:0016787
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000231294 EMBL:BC110155 IPI:IPI00725178
UniGene:Bt.4894 ProteinModelPortal:Q2YDM2 STRING:Q2YDM2
PRIDE:Q2YDM2 HOVERGEN:HBG080215 InParanoid:Q2YDM2 OrthoDB:EOG4GXFMB
Uniprot:Q2YDM2
Length = 599
Score = 116 (45.9 bits), Expect = 0.00049, P = 0.00049
Identities = 31/106 (29%), Positives = 52/106 (49%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDM-ECGFSRDLF 92
I W + K+ K+F + N F FKH+K A P P VV +TP M G S +F
Sbjct: 283 IPWTNQKIRKTF--VQRNMFEFKHIKAFDRA--FADSPGPMVVF-ATPGMLHAGQSLQIF 337
Query: 93 FQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLE 138
+W + +N +I+ GT+ + L G R L ++ ++ + ++
Sbjct: 338 RKWAGNEKNMVIMPGYCVQGTVGHKI--LSGQRKLEMEGRQVLEVK 381
>UNIPROTKB|F1NV30 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9031
"Gallus gallus" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 OMA:MAVEYMS GeneTree:ENSGT00700000104485
IPI:IPI00571913 EMBL:AADN02040858 Ensembl:ENSGALT00000002586
Uniprot:F1NV30
Length = 600
Score = 115 (45.5 bits), Expect = 0.00065, P = 0.00065
Identities = 31/106 (29%), Positives = 52/106 (49%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDM-ECGFSRDLF 92
I W + K+ K+F + N F FKH+K A P P VV +TP M G S +F
Sbjct: 283 ITWTNQKIRKTF--VQRNMFEFKHIKAFDRA--FADNPGPMVVF-ATPGMLHAGQSLQIF 337
Query: 93 FQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLE 138
+W + +N +I+ GT+ + L G R L ++ ++ + ++
Sbjct: 338 RKWAGNEKNMVIMPGYCVQGTVGHKI--LSGQRKLEMEGRQILEVK 381
>UNIPROTKB|Q5ZIH0 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9031
"Gallus gallus" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0016787 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000231294 KO:K13148 GO:GO:0032039 GO:GO:0016180
HOVERGEN:HBG080215 OrthoDB:EOG4GXFMB EMBL:AJ720814 IPI:IPI00571913
RefSeq:NP_001012854.1 UniGene:Gga.13403 ProteinModelPortal:Q5ZIH0
STRING:Q5ZIH0 GeneID:419418 KEGG:gga:419418 CTD:54973
InParanoid:Q5ZIH0 NextBio:20822477 Uniprot:Q5ZIH0
Length = 600
Score = 115 (45.5 bits), Expect = 0.00065, P = 0.00065
Identities = 31/106 (29%), Positives = 52/106 (49%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDM-ECGFSRDLF 92
I W + K+ K+F + N F FKH+K A P P VV +TP M G S +F
Sbjct: 283 ITWTNQKIRKTF--VQRNMFEFKHIKAFDRA--FADNPGPMVVF-ATPGMLHAGQSLQIF 337
Query: 93 FQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLE 138
+W + +N +I+ GT+ + L G R L ++ ++ + ++
Sbjct: 338 RKWAGNEKNMVIMPGYCVQGTVGHKI--LSGQRKLEMEGRQILEVK 381
>UNIPROTKB|E2QY53 [details] [associations]
symbol:CPSF3L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 OMA:MAVEYMS GeneTree:ENSGT00700000104485
EMBL:AAEX03003844 RefSeq:XP_003639102.1 Ensembl:ENSCAFT00000030626
GeneID:100855777 KEGG:cfa:100855777 Uniprot:E2QY53
Length = 600
Score = 115 (45.5 bits), Expect = 0.00065, P = 0.00065
Identities = 31/106 (29%), Positives = 52/106 (49%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDM-ECGFSRDLF 92
I W + K+ K+F + N F FKH+K A P P VV +TP M G S +F
Sbjct: 283 ITWTNQKIRKTF--VQRNMFEFKHIKAFDRA--FADNPGPMVVF-ATPGMLHAGQSLQIF 337
Query: 93 FQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLE 138
+W + +N +I+ GT+ + L G R L ++ ++ + ++
Sbjct: 338 RKWAGNEKNMVIMPGYCVQGTVGHKI--LSGQRKLEMEGRQVLEVK 381
>UNIPROTKB|Q5TA45 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0005634 GO:GO:0005737 GO:GO:0016787
EMBL:AL139287 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 KO:K13148 HOVERGEN:HBG080215
OrthoDB:EOG4GXFMB CTD:54973 EMBL:AL136813 EMBL:AK000549
EMBL:AK021939 EMBL:AK023356 EMBL:AK297350 EMBL:CR533557
EMBL:BC000675 EMBL:BC007978 EMBL:BC013904 EMBL:BK005728
EMBL:BK005673 IPI:IPI00063404 IPI:IPI00306882 IPI:IPI00514973
RefSeq:NP_001243392.1 RefSeq:NP_060341.2 UniGene:Hs.6449
ProteinModelPortal:Q5TA45 SMR:Q5TA45 IntAct:Q5TA45
MINT:MINT-1482228 STRING:Q5TA45 PhosphoSite:Q5TA45 DMDM:118572557
PaxDb:Q5TA45 PRIDE:Q5TA45 DNASU:54973 Ensembl:ENST00000419704
Ensembl:ENST00000435064 Ensembl:ENST00000450926
Ensembl:ENST00000545578 GeneID:54973 KEGG:hsa:54973 UCSC:uc001aee.1
UCSC:uc001aeh.1 UCSC:uc009vjz.1 GeneCards:GC01M001236
HGNC:HGNC:26052 HPA:HPA028379 HPA:HPA029025 MIM:611354
neXtProt:NX_Q5TA45 PharmGKB:PA142672080 InParanoid:Q5TA45
PhylomeDB:Q5TA45 ChiTaRS:CPSF3L GenomeRNAi:54973 NextBio:58222
ArrayExpress:Q5TA45 Bgee:Q5TA45 Genevestigator:Q5TA45
GermOnline:ENSG00000127054 Uniprot:Q5TA45
Length = 600
Score = 115 (45.5 bits), Expect = 0.00065, P = 0.00065
Identities = 31/106 (29%), Positives = 52/106 (49%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDM-ECGFSRDLF 92
I W + K+ K+F + N F FKH+K A P P VV +TP M G S +F
Sbjct: 283 IPWTNQKIRKTF--VQRNMFEFKHIKAFDRA--FADNPGPMVVF-ATPGMLHAGQSLQIF 337
Query: 93 FQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLE 138
+W + +N +I+ GT+ + L G R L ++ ++ + ++
Sbjct: 338 RKWAGNEKNMVIMPGYCVQGTVGHKI--LSGQRKLEMEGRQVLEVK 381
>UNIPROTKB|G3V1S5 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 EMBL:AL139287 EMBL:CH471183 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 KO:K13148 OMA:MAVEYMS
CTD:54973 UniGene:Hs.6449 GeneID:54973 KEGG:hsa:54973
HGNC:HGNC:26052 ChiTaRS:CPSF3L GenomeRNAi:54973
RefSeq:NP_001243385.1 ProteinModelPortal:G3V1S5 SMR:G3V1S5
Ensembl:ENST00000540437 ArrayExpress:G3V1S5 Bgee:G3V1S5
Uniprot:G3V1S5
Length = 606
Score = 115 (45.5 bits), Expect = 0.00065, P = 0.00065
Identities = 31/106 (29%), Positives = 52/106 (49%)
Query: 34 IEWMSDKLMKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDM-ECGFSRDLF 92
I W + K+ K+F + N F FKH+K A P P VV +TP M G S +F
Sbjct: 289 IPWTNQKIRKTF--VQRNMFEFKHIKAFDRA--FADNPGPMVVF-ATPGMLHAGQSLQIF 343
Query: 93 FQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLE 138
+W + +N +I+ GT+ + L G R L ++ ++ + ++
Sbjct: 344 RKWAGNEKNMVIMPGYCVQGTVGHKI--LSGQRKLEMEGRQVLEVK 387
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.137 0.420 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 276 257 0.00086 114 3 11 22 0.41 33
32 0.48 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 49
No. of states in DFA: 601 (64 KB)
Total size of DFA: 198 KB (2110 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.81u 0.07s 19.88t Elapsed: 00:00:17
Total cpu time: 19.81u 0.07s 19.88t Elapsed: 00:00:17
Start: Thu Aug 15 12:46:15 2013 End: Thu Aug 15 12:46:32 2013